Query 035641
Match_columns 314
No_of_seqs 257 out of 1118
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 07:42:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035641.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035641hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1enwa_ a.5.4.1 (A:) Elongatio 99.9 1.4E-24 1E-28 174.3 5.7 105 129-244 4-112 (114)
2 d1tfia_ g.41.3.1 (A:) Transcri 99.8 5.4E-22 3.9E-26 135.2 4.9 46 269-314 4-49 (50)
3 d1qypa_ g.41.3.1 (A:) RBP9 sub 99.8 1E-20 7.4E-25 132.7 4.8 45 269-313 10-54 (57)
4 d1twfi2 g.41.3.1 (I:50-121) RB 99.8 5E-20 3.6E-24 135.0 5.3 49 265-313 14-62 (72)
5 d1eo0a_ a.48.3.1 (A:) Transcri 99.6 6E-17 4.4E-21 120.2 4.3 72 7-86 5-77 (77)
6 d1wjta_ a.48.3.1 (A:) Transcri 99.6 4.2E-16 3.1E-20 122.2 5.1 74 7-86 13-87 (103)
7 d2b4jc1 a.48.4.1 (C:346-426) P 97.7 2.8E-05 2.1E-09 56.8 6.3 76 1-82 3-80 (81)
8 d2akla2 g.41.3.5 (A:3-40) Hypo 95.6 0.0021 1.5E-07 39.6 1.6 29 274-313 3-31 (38)
9 d2fiya1 e.59.1.1 (A:19-308) Fd 87.5 0.22 1.6E-05 43.8 4.3 39 274-314 164-202 (290)
10 d1qxfa_ g.41.8.4 (A:) Ribosoma 87.2 0.16 1.2E-05 33.8 2.4 29 274-311 7-35 (58)
11 d1dl6a_ g.41.3.1 (A:) Transcri 87.2 0.15 1.1E-05 34.1 2.2 31 271-310 8-38 (58)
12 d1twfl_ g.41.9.2 (L:) RBP12 su 80.7 0.33 2.4E-05 30.7 1.6 29 272-311 2-30 (46)
13 d1wiia_ g.41.3.4 (A:) Hypothet 80.3 0.79 5.8E-05 32.7 3.8 38 272-313 21-58 (85)
14 d1k81a_ g.59.1.1 (A:) Zinc-bin 79.6 0.46 3.4E-05 28.4 2.0 29 276-311 2-30 (36)
15 d1vd4a_ g.41.3.1 (A:) Transcri 78.9 0.22 1.6E-05 33.7 0.3 37 271-310 11-47 (62)
16 d1pfta_ g.41.3.1 (A:) Transcri 77.4 0.68 5E-05 29.6 2.5 28 274-310 5-32 (50)
17 d1neea2 g.59.1.1 (A:99-135) Zi 69.8 0.46 3.4E-05 28.6 0.1 29 276-311 3-31 (37)
18 d1vqoz1 g.41.8.1 (Z:10-82) Rib 68.1 1.9 0.00014 29.6 3.1 30 273-312 26-55 (73)
19 d1jj2y_ g.41.8.1 (Y:) Ribosoma 63.9 4.6 0.00033 27.6 4.4 30 273-312 26-55 (73)
20 d1y0ja1 g.39.1.1 (A:200-238) E 63.1 0.67 4.9E-05 28.2 -0.1 32 275-313 3-34 (39)
21 d1wjva1 g.37.1.2 (A:1-35) Cell 60.7 2.2 0.00016 24.8 1.8 14 299-312 7-20 (35)
22 d2vuti1 g.39.1.1 (I:671-712) E 59.1 0.3 2.2E-05 30.3 -2.3 31 276-313 2-32 (42)
23 d2fiya1 e.59.1.1 (A:19-308) Fd 55.6 3.1 0.00022 36.0 2.9 39 275-313 205-246 (290)
24 d1x6ea2 g.37.1.1 (A:41-66) Zin 55.4 2.2 0.00016 23.4 1.2 11 303-313 3-13 (26)
25 d1x6ha1 g.37.1.1 (A:44-80) Tra 54.8 2.3 0.00017 24.7 1.2 11 303-313 5-15 (37)
26 d2ct7a1 g.44.1.4 (A:8-80) Ring 52.8 4.3 0.00031 27.3 2.7 31 272-312 16-46 (73)
27 d2dlqa2 g.37.1.1 (A:35-62) GLI 51.4 2.3 0.00017 23.1 0.8 8 275-282 2-9 (28)
28 d1yuza2 g.41.5.1 (A:167-202) N 45.0 3.9 0.00029 24.1 1.2 12 301-312 4-15 (36)
29 d1k3xa3 g.39.1.8 (A:223-262) E 45.0 8.5 0.00062 23.0 2.9 30 273-310 11-40 (40)
30 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 43.3 3 0.00022 27.3 0.6 25 271-310 26-50 (58)
31 d2j0151 g.41.8.5 (5:2-60) Ribo 43.2 3.2 0.00023 27.3 0.7 24 272-310 27-50 (59)
32 d2jnya1 b.171.1.1 (A:1-59) Unc 41.4 5.4 0.00039 26.1 1.6 30 274-313 10-39 (59)
33 d3gata_ g.39.1.1 (A:) Erythroi 40.7 0.99 7.2E-05 30.6 -2.3 32 275-313 5-36 (66)
34 d1x3za1 d.3.1.4 (A:8-327) Pept 39.5 6.1 0.00044 34.5 2.2 43 272-314 117-167 (320)
35 d1nnqa2 g.41.5.1 (A:135-171) R 38.5 5.9 0.00043 23.4 1.3 13 300-312 3-15 (37)
36 d2ctda2 g.37.1.1 (A:61-90) Zin 38.0 5 0.00036 22.1 0.8 9 274-282 2-10 (30)
37 d1x6ea1 g.37.1.1 (A:8-40) Zinc 36.9 6.3 0.00046 22.6 1.2 11 303-313 8-18 (33)
38 d1a1ia2 g.37.1.1 (A:132-159) Z 35.7 6.8 0.0005 21.6 1.2 11 303-313 4-14 (28)
39 d1twfi1 g.41.3.1 (I:1-49) RBP9 35.1 12 0.00089 23.4 2.5 30 276-311 6-35 (49)
40 d1pfva3 g.41.1.1 (A:141-175) M 35.0 7.8 0.00057 22.6 1.4 23 275-312 3-25 (35)
41 d2cota2 g.37.1.1 (A:7-44) Zinc 33.8 5 0.00036 23.6 0.4 11 303-313 13-23 (38)
42 d2hf1a1 b.171.1.1 (A:2-60) Hyp 33.5 7.4 0.00054 25.4 1.3 30 274-313 7-36 (59)
43 d1ibia1 g.39.1.3 (A:117-144) C 33.3 6.4 0.00047 21.6 0.8 7 276-282 3-9 (28)
44 d1ltla_ b.40.4.11 (A:) DNA rep 30.1 7.3 0.00053 32.1 1.0 34 271-310 123-156 (239)
45 d2adra1 g.37.1.1 (A:102-130) A 28.9 7.1 0.00052 21.6 0.5 11 303-313 3-13 (29)
46 d1dx8a_ g.41.5.1 (A:) Rubredox 28.7 12 0.00091 25.1 1.8 21 272-292 38-58 (70)
47 d2pk7a1 b.171.1.1 (A:3-61) Unc 28.6 16 0.0012 23.6 2.4 29 274-312 6-34 (59)
48 d2f4ma1 d.3.1.4 (A:164-450) Pe 27.8 9.4 0.00069 32.7 1.4 40 272-312 79-124 (287)
49 d1srka_ g.37.1.1 (A:) Zinc fin 27.7 11 0.0008 21.8 1.2 11 303-313 8-18 (35)
50 d1sp1a_ g.37.1.1 (A:) Transcri 27.6 6.3 0.00046 21.9 0.1 10 303-312 3-12 (29)
51 d2qam01 g.41.8.5 (0:1-56) Ribo 27.0 7.5 0.00055 25.1 0.4 14 271-284 24-37 (56)
52 d1x6ha2 g.37.1.1 (A:8-43) Tran 27.0 11 0.00081 21.7 1.2 11 303-313 9-19 (36)
53 d6rxna_ g.41.5.1 (A:) Rubredox 26.9 10 0.00074 23.3 1.0 16 272-287 27-42 (45)
54 d1tdza3 g.39.1.8 (A:225-271) D 26.8 24 0.0018 21.5 2.9 31 273-311 17-47 (47)
55 d1s24a_ g.41.5.1 (A:) Two-iron 24.9 15 0.0011 23.6 1.6 19 272-290 35-53 (56)
56 d2csha2 g.37.1.1 (A:61-104) Zi 24.9 13 0.00092 22.3 1.1 10 303-312 6-15 (44)
57 d1bboa2 g.37.1.1 (A:29-57) Enh 24.9 14 0.001 20.2 1.2 11 303-313 2-12 (29)
58 d2ct1a2 g.37.1.1 (A:8-43) Tran 24.7 13 0.00096 21.4 1.2 11 303-313 9-19 (36)
59 d1rqga3 g.41.1.1 (A:139-173) M 24.4 12 0.00084 21.8 0.9 23 275-312 3-25 (35)
60 d1u5ka2 g.45.1.2 (A:81-237) Re 23.7 18 0.0013 27.3 2.3 32 272-311 68-99 (157)
61 d1p7aa_ g.37.1.1 (A:) Kruppel- 23.5 10 0.00074 22.0 0.5 11 303-313 12-22 (37)
62 d1iroa_ g.41.5.1 (A:) Rubredox 23.3 15 0.0011 23.3 1.3 18 272-289 34-51 (53)
63 d2j9ub1 g.41.11.1 (B:115-161) 23.3 17 0.0013 22.3 1.6 32 274-310 3-34 (47)
64 d1a1ia3 g.37.1.1 (A:160-187) Z 23.1 15 0.0011 20.1 1.1 10 303-312 4-13 (28)
65 d2epsa1 g.37.1.1 (A:408-446) P 23.0 15 0.0011 21.7 1.2 11 303-313 6-16 (39)
66 d1ubdc2 g.37.1.1 (C:323-350) Y 22.7 14 0.00099 20.0 0.9 9 304-312 4-12 (28)
67 d1r2za3 g.39.1.8 (A:229-274) D 22.4 33 0.0024 20.7 2.9 29 273-309 17-45 (46)
68 d1k82a3 g.39.1.8 (A:225-268) D 22.2 34 0.0025 20.5 2.9 29 273-309 15-43 (44)
69 d1brfa_ g.41.5.1 (A:) Rubredox 21.7 16 0.0012 23.1 1.3 18 272-289 33-50 (53)
70 d2dsxa1 g.41.5.1 (A:1-52) Rubr 21.7 17 0.0012 23.0 1.3 17 272-288 34-50 (52)
71 d1lkoa2 g.41.5.1 (A:148-191) R 21.4 16 0.0012 22.3 1.2 13 276-288 26-38 (44)
72 d2epqa1 g.37.1.1 (A:380-411) P 20.3 11 0.00077 21.0 0.1 11 303-313 4-14 (32)
No 1
>d1enwa_ a.5.4.1 (A:) Elongation factor TFIIS domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.89 E-value=1.4e-24 Score=174.26 Aligned_cols=105 Identities=26% Similarity=0.315 Sum_probs=91.2
Q ss_pred CCCCCCCCCC--CCCCcHHHHHHHHHHHHHHHhhhccccchhHHHhhhhcCChHHHHHHHHHHHHHhhcCCC--hhhHhH
Q 035641 129 TASIRKPSHA--DQAKDSMRDKIRKDLEKALSRVASEAADDEEITDRVKARDPKQVAASVERVMFEKLRPMG--VAEKRK 204 (314)
Q Consensus 129 ~~~~~~~~~~--~~~~d~~R~k~~~~L~~aL~~~~~~~~~~~~~~~~~~~~d~~~lA~~IE~alf~~~~~~~--~~yk~k 204 (314)
.|++.+.+++ ..++|++|++|+++|+++|..+..+.++ +...+|.+||.+||..|+... ..|++|
T Consensus 4 ~pr~~k~d~v~~~~~~d~~R~~~~~~L~~aL~~~~~~~~~-----------~~~~la~~IE~~lf~~~~~~~~~~~Y~~k 72 (114)
T d1enwa_ 4 MPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQ-----------SILHTAKAIESEMNKVNNCDTNEAAYKAR 72 (114)
T ss_dssp CSCSTTTTCCCCCSSTTTTHHHHHHHHHHHHHHHCSSSCS-----------CHHHHHHHHTTTTTSSCTTTTTHHHHHHH
T ss_pred CCCCccCCCCCCccCCcHHHHHHHHHHHHHHhCcCccchh-----------HHHHHHHHHHHHHHHHhcccCCcHHHHHH
Confidence 4566667776 6789999999999999999877654333 345789999999999997532 579999
Q ss_pred HHhHHhhcCCCCChhhhhhhhcCCCChhhhhcCChhhcCc
Q 035641 205 HRSIMFNMSDEKNPDLRRRVLIGEVTPERLATMTPEELAS 244 (314)
Q Consensus 205 ~Rsl~~NLkd~~Np~Lr~~vl~G~i~p~~lv~Ms~eEmas 244 (314)
+|||+|||||++||+|+.+|+.|+|+|++||.|+++|||+
T Consensus 73 ~rsi~~NLkd~~N~~L~~~v~~g~i~p~~l~~M~~~ElaP 112 (114)
T d1enwa_ 73 YRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAP 112 (114)
T ss_dssp HHHHHHHHTTSCCCCTTTHHHHCSSCCSSHHHHTTTTTCS
T ss_pred HHHHHHHcCccchHHHHHHHHcCCCCHHHHhCCCHHHcCC
Confidence 9999999999999999999999999999999999999997
No 2
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=5.4e-22 Score=135.23 Aligned_cols=46 Identities=61% Similarity=1.162 Sum_probs=43.8
Q ss_pred CCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcccC
Q 035641 269 KGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWKC 314 (314)
Q Consensus 269 ~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 314 (314)
.++|+.|+||+||++++.|+|+|+||||||||+||.|.+|||+|||
T Consensus 4 g~~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~Wr~ 49 (50)
T d1tfia_ 4 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CEECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEEC
T ss_pred CcccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCeeec
Confidence 4468899999999999999999999999999999999999999997
No 3
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=99.80 E-value=1e-20 Score=132.68 Aligned_cols=45 Identities=33% Similarity=0.844 Sum_probs=42.2
Q ss_pred CCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 269 KGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 269 ~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..+++.+.||+||+++++|+|+|+||||||||+||+|.+|||+||
T Consensus 10 ~~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wr 54 (57)
T d1qypa_ 10 TLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp SSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred cCCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcce
Confidence 345677999999999999999999999999999999999999997
No 4
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.78 E-value=5e-20 Score=135.00 Aligned_cols=49 Identities=18% Similarity=0.433 Sum_probs=44.7
Q ss_pred ccccCCCccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 265 PEKKKGTTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 265 ~~~~~~~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
+.++..+.+.+.||+||+++++|||.|+||||||||+||+|++|||+|+
T Consensus 14 ~~DPtlp~t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr 62 (72)
T d1twfi2 14 GSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 62 (72)
T ss_dssp GGCTTSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred ccCCCCCccCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcc
Confidence 4456666678999999999999999999999999999999999999997
No 5
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.63 E-value=6e-17 Score=120.15 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhcC-CCCCHHhhhcCcceeecccccCCCCHHHHHHHHHHHHHHHHhhh
Q 035641 7 TLFGAAKKAADAAAATNRSEPEVQRCADALKHLQA-FPVTYDLLVSTQVGKSLRHLKKHPCEKVQNAASELLHIWKQKIV 85 (314)
Q Consensus 7 el~~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L~~-~~~t~~~L~~T~iG~~V~~Lrkh~~~~i~~~Ak~Li~~WK~~~v 85 (314)
|+-.+.+.+.+.. .+.+.++++|+.|++ ++||.++|++|+||++||+||||++++|+.+|+.||++||+ .|
T Consensus 5 ev~~~~k~Lek~~-------~~~~~~l~~L~~L~~~~~it~d~L~~T~iG~~Vn~LRkh~~~~v~~lAk~Lv~~WK~-~V 76 (77)
T d1eo0a_ 5 EVLVHVKNLEKNK-------SNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD-AI 76 (77)
T ss_dssp HHHHHHHHHHHHC-------SSSHHHHHHHHHHTTTCSCSTTHHHHHHHHHHHHHCCSSSCTTHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhccc-------CCHHHHHHHHHHHHhcCCCcHHHHHHCCccHHHHHHhcCCcHHHHHHHHHHHHHHHH-hc
Confidence 4555555555543 356899999999996 99999999999999999999999999999999999999999 76
Q ss_pred c
Q 035641 86 L 86 (314)
Q Consensus 86 ~ 86 (314)
.
T Consensus 77 d 77 (77)
T d1eo0a_ 77 N 77 (77)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.58 E-value=4.2e-16 Score=122.17 Aligned_cols=74 Identities=26% Similarity=0.407 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhcCCCCCHHhhhcCcceeecccccCCC-CHHHHHHHHHHHHHHHHhhh
Q 035641 7 TLFGAAKKAADAAAATNRSEPEVQRCADALKHLQAFPVTYDLLVSTQVGKSLRHLKKHP-CEKVQNAASELLHIWKQKIV 85 (314)
Q Consensus 7 el~~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~t~~~L~~T~iG~~V~~Lrkh~-~~~i~~~Ak~Li~~WK~~~v 85 (314)
|+.++.+.+.+++.. .+.+.++++|+.|+.++||+++|+.|+||++||+||||. +++|+.+|+.||++||+ +|
T Consensus 13 ei~~i~k~L~~~~~~-----~~~~~vl~~L~~L~~~~it~e~L~~T~IGk~Vn~LrK~~~~~~v~~lAk~Lv~~WK~-~v 86 (103)
T d1wjta_ 13 ELLRIAKKLEKMVSR-----KKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKR-LL 86 (103)
T ss_dssp HHHHHHHHHHHHHHT-----TCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHcCCCCHHHHHhCCccHhHHHHHccCCCHHHHHHHHHHHHHHHH-HH
Confidence 455566666665522 255679999999999999999999999999999999985 79999999999999999 99
Q ss_pred c
Q 035641 86 L 86 (314)
Q Consensus 86 ~ 86 (314)
.
T Consensus 87 ~ 87 (103)
T d1wjta_ 87 D 87 (103)
T ss_dssp C
T ss_pred H
Confidence 7
No 7
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.73 E-value=2.8e-05 Score=56.77 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhcCCCCCHHhhhcC-cceeecccccCC-CCHHHHHHHHHHHH
Q 035641 1 MEKKLVTLFGAAKKAADAAAATNRSEPEVQRCADALKHLQAFPVTYDLLVST-QVGKSLRHLKKH-PCEKVQNAASELLH 78 (314)
Q Consensus 1 ~~~~~~el~~~a~k~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~t~~~L~~T-~iG~~V~~Lrkh-~~~~i~~~Ak~Li~ 78 (314)
||+.|++|...-+-+ ...+. +++..|+++|.+|.++++|.-+|..- .|--++.++|++ .|.+|+..|..|+.
T Consensus 3 ~E~~l~~L~~~ik~s-----L~~~~-~dv~kcL~~L~~l~~l~vt~~mL~kn~e~V~tikklRry~gn~~Ir~kA~~ly~ 76 (81)
T d2b4jc1 3 MDSRLQRIHAEIKNS-----LKIDN-LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYN 76 (81)
T ss_dssp HHHHHHHHHHHHHHH-----TCTTS-CCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----hccCC-CCHHHHHHHHHHHHcCCCCHHHHHHChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 578888887655322 12222 69999999999999999999777654 488899999998 49999999999999
Q ss_pred HHHH
Q 035641 79 IWKQ 82 (314)
Q Consensus 79 ~WK~ 82 (314)
+||.
T Consensus 77 kfKs 80 (81)
T d2b4jc1 77 KFKN 80 (81)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9997
No 8
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=95.60 E-value=0.0021 Score=39.59 Aligned_cols=29 Identities=21% Similarity=0.584 Sum_probs=21.6
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.-.||+|+..-++- +-..++|..|||.|.
T Consensus 3 lP~CP~C~seytYe-----------dg~l~vCPeC~hEW~ 31 (38)
T d2akla2 3 LPPCPQCNSEYTYE-----------DGALLVCPECAHEWS 31 (38)
T ss_dssp SCCCTTTCCCCCEE-----------CSSSEEETTTTEEEC
T ss_pred CCcCCCCCCcceEc-----------CCCEEECCcccCcCC
Confidence 34799999866642 223589999999995
No 9
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=87.48 E-value=0.22 Score=43.75 Aligned_cols=39 Identities=18% Similarity=0.561 Sum_probs=25.8
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcccC
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWKC 314 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 314 (314)
...||-||+. .+.-.+......++ ..|..|.-|++.|.|
T Consensus 164 ~~~CPvCGs~-P~~s~l~~~~~~~G-~R~l~C~~C~teW~~ 202 (290)
T d2fiya1 164 RTLCPACGSP-PMAGMIRQGGKETG-LRYLSCSLCACEWHY 202 (290)
T ss_dssp CSSCTTTCCC-EEEEEEEC----CC-EEEEEETTTCCEEEC
T ss_pred CCcCCCCCCc-chhheeeccCCCCC-ceEEECCCCCCcccc
Confidence 3569999997 44444433322334 589999999999976
No 10
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=87.21 E-value=0.16 Score=33.85 Aligned_cols=29 Identities=24% Similarity=0.683 Sum_probs=23.5
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
..+||.|++...+|-..|+ -+.|..||..
T Consensus 7 ~VkC~~C~n~~ivFsha~t---------~V~C~~Cg~~ 35 (58)
T d1qxfa_ 7 KVKCPDCEHEQVIFDHPST---------IVKCIICGRT 35 (58)
T ss_dssp EEECTTTCCEEEEESSCSS---------CEECSSSCCE
T ss_pred EeECCCCCCeEEEEecCce---------EEEccccCCE
Confidence 4699999999999966543 4899999874
No 11
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.18 E-value=0.15 Score=34.08 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=22.3
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
.....+||.||+...++-.. .--++|..||.
T Consensus 8 ~~~~~~Cp~Cgs~~ii~D~~---------~Ge~vC~~CG~ 38 (58)
T d1dl6a_ 8 ALPRVTCPNHPDAILVEDYR---------AGDMICPECGL 38 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSS---------SCCEECTTTCC
T ss_pred cccccCCCCCCCCCEEEECC---------CCcEecccCCC
Confidence 34568999999988665321 22489999996
No 12
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=80.73 E-value=0.33 Score=30.66 Aligned_cols=29 Identities=28% Similarity=0.754 Sum_probs=18.9
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
+..+.|+.||.... + ...+| +.|.+||||
T Consensus 2 ~v~YiCgeCg~~~~----l---~~~d~----irCreCG~R 30 (46)
T d1twfl_ 2 TLKYICAECSSKLS----L---SRTDA----VRCKDCGHR 30 (46)
T ss_dssp CCCEECSSSCCEEC----C---CTTST----TCCSSSCCC
T ss_pred ceEEEcccCCCceE----e---CCCCc----EEeccCCcE
Confidence 34578888887544 2 23334 678889887
No 13
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=80.32 E-value=0.79 Score=32.66 Aligned_cols=38 Identities=21% Similarity=0.513 Sum_probs=28.0
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.+.|.||-|+|.+++---+--. ..+-.+.|..||..+.
T Consensus 21 ~t~F~CPfCnh~~sV~vk~dkk----~~~g~l~C~vCg~~~~ 58 (85)
T d1wiia_ 21 ETQFTCPFCNHEKSCDVKMDRA----RNTGVISCTVCLEEFQ 58 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETT----TTEEEEEESSSCCEEE
T ss_pred CceEcCCCCCCCCeEEEEEEec----CCEEEEEEecCCCeEE
Confidence 4569999999988877554322 2577889999998763
No 14
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=79.60 E-value=0.46 Score=28.43 Aligned_cols=29 Identities=21% Similarity=0.580 Sum_probs=22.3
Q ss_pred ecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 276 KCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 276 ~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
.|+.||+.++.+.- . .=+.|..|..||-+
T Consensus 2 ~C~~C~spDT~l~k-e------~R~~~l~C~aCGa~ 30 (36)
T d1k81a_ 2 ICRECGKPDTKIIK-E------GRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEE-E------TTEEEEEEETTTEE
T ss_pred CCCCCCCCCCEEEE-c------CCEEEEEeccCCCC
Confidence 69999999876632 2 23789999999964
No 15
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.90 E-value=0.22 Score=33.66 Aligned_cols=37 Identities=24% Similarity=0.659 Sum_probs=25.6
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
....|.||.|+++ |.++-.-+-=.|++..|.|..|+.
T Consensus 11 ~~~~y~Cp~C~~~---ys~Lda~~L~d~~~~~F~C~~C~~ 47 (62)
T d1vd4a_ 11 NRASFKCPVCSST---FTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp SSSEEECSSSCCE---EEHHHHHHHEETTTTEEBCSSSCC
T ss_pred cCCceECCCCCCC---cchhhHHHhcCcCCCeEEecCCCC
Confidence 4567999999985 444422222346778999999985
No 16
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=77.40 E-value=0.68 Score=29.62 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=19.4
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
...||.||....++- . -+--++|.+||.
T Consensus 5 ~~~Cp~Cgs~~iv~D-~--------~~Ge~vC~~CG~ 32 (50)
T d1pfta_ 5 QKVCPACESAELIYD-P--------ERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEE-T--------TTTEEEESSSCC
T ss_pred cccCcCCCCCcEEEE-C--------CCCeEecccCCc
Confidence 457999998775442 1 122689999986
No 17
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=69.83 E-value=0.46 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.602 Sum_probs=21.6
Q ss_pred ecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 276 KCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 276 ~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
.|+.|+..++.+.- |.=+.|..|..||-+
T Consensus 3 ~C~~C~spDT~l~k-------e~R~~~l~C~aCGa~ 31 (37)
T d1neea2 3 ICHECNRPDTRIIR-------EGRISLLKCEACGAK 31 (37)
T ss_dssp HHTCCSSCSSCCEE-------ETTTTEEECSTTSCC
T ss_pred ECCCCCCCCCEEEE-------cCCEEEEEeccCCCC
Confidence 59999999876522 233779999999965
No 18
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=68.11 E-value=1.9 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.649 Sum_probs=21.7
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..+.||.||...+ -.+ -+-+..|..||+.|
T Consensus 26 ~ky~Cp~Cgk~~v-kR~---------a~GIW~C~kC~~~~ 55 (73)
T d1vqoz1 26 EDHACPNCGEDRV-DRQ---------GTGIWQCSYCDYKF 55 (73)
T ss_dssp SCBCCSSSSCSCE-EEE---------ETTEEEETTTCCEE
T ss_pred CCccCCCCCCcee-EEE---------EEEEEECCCCCCEE
Confidence 3689999998644 222 24478999999876
No 19
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=63.94 E-value=4.6 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=21.3
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
..+.||.||...+. .+ -+-+..|..||+.|
T Consensus 26 ~ky~Cp~Cgk~~vk-R~---------a~GIW~C~kC~~~~ 55 (73)
T d1jj2y_ 26 KKHKCPVCGFKKLK-RA---------GTGIWMCGHCGYKI 55 (73)
T ss_dssp SCBCCSSSCCSCEE-EE---------ETTEEEETTTCCEE
T ss_pred CCccCCCCCCCceE-EE---------EEEEEECCCCCCEE
Confidence 46899999976442 22 13388999999875
No 20
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=63.06 E-value=0.67 Score=28.19 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=22.9
Q ss_pred eecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
-.|..||..++-.+ |...++- ..|..||-.|+
T Consensus 3 r~C~~Cgtt~Tp~W----R~gp~G~---~LCNACGl~~r 34 (39)
T d1y0ja1 3 RECVNCGATATPLW----RRDRTGH---YLCNACGLYHK 34 (39)
T ss_dssp CCCSSSCCCCCSCC----EECTTSC---EECSSHHHHHH
T ss_pred CCCCCCCCCCCccc----ccCCCCC---EeeHHhHHHHH
Confidence 36999998887543 4455552 59999998775
No 21
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.70 E-value=2.2 Score=24.75 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=10.7
Q ss_pred CeEEEEcCCCCCcc
Q 035641 299 MTTYVTCAECNKRW 312 (314)
Q Consensus 299 mt~f~~C~~C~~~w 312 (314)
-.+||+|..||..-
T Consensus 7 ~MVfFtCn~CGEs~ 20 (35)
T d1wjva1 7 GMVFFTCNACGESV 20 (35)
T ss_dssp CCCEEEESSSCCEE
T ss_pred eEEEEEcchhHHHH
Confidence 35789999999753
No 22
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}
Probab=59.08 E-value=0.3 Score=30.32 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=22.5
Q ss_pred ecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 276 KCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 276 ~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
.|..||-.++..+ |...++- .+|..||-.|+
T Consensus 2 ~C~nC~tt~Tp~W----Rr~~~G~---~lCNACGl~~k 32 (42)
T d2vuti1 2 TCTNCFTQTTPLW----RRNPEGQ---PLCNACGLFLK 32 (42)
T ss_dssp CCSSSCCCCCSCC----EECTTSC---EECHHHHHHHH
T ss_pred cCCCCCCCCCccc----eeCCCCC---CchhhhhHHHH
Confidence 5899998877544 4455662 47999998875
No 23
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=55.63 E-value=3.1 Score=36.01 Aligned_cols=39 Identities=28% Similarity=0.555 Sum_probs=23.6
Q ss_pred eecCCCCCCceE-E--EeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 275 FKCSGCGKSNCS-Y--HQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 275 ~~C~~C~~~~~~-~--~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..|+.||+.+-. | +....-..+++-....+|..|+.-+|
T Consensus 205 ~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~r~e~C~~C~~Y~K 246 (290)
T d2fiya1 205 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 246 (290)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred ccCCCCCCCCCcceEEEecCCCcccccceEEEEcCCcCCeEE
Confidence 489999977643 2 32222222333457889999987654
No 24
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.39 E-value=2.2 Score=23.39 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=8.4
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 3 y~C~eCgK~F~ 13 (26)
T d1x6ea2 3 YKCLECGKAFS 13 (26)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCcCeec
Confidence 77888887764
No 25
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.85 E-value=2.3 Score=24.68 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=7.4
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|+|..||+.|.
T Consensus 5 fvcskcgktft 15 (37)
T d1x6ha1 5 FVCSKCGKTFT 15 (37)
T ss_dssp EECSSSCCEES
T ss_pred eeecccccchh
Confidence 66777777653
No 26
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.75 E-value=4.3 Score=27.34 Aligned_cols=31 Identities=16% Similarity=0.481 Sum_probs=17.5
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
.+...||+|+.. + .+..+.+ .++|..||+.|
T Consensus 16 ~~~k~CP~C~~~--~-----~~~~~~~---~~~C~~C~~~f 46 (73)
T d2ct7a1 16 PKFLWCAQCSFG--F-----IYEREQL---EATCPQCHQTF 46 (73)
T ss_dssp CCEECCSSSCCC--E-----ECCCSCS---CEECTTTCCEE
T ss_pred CCCCCCCCCCCE--e-----EECCCCC---EEEcCCCCCeE
Confidence 345789999874 1 1223333 35666666654
No 27
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.43 E-value=2.3 Score=23.12 Aligned_cols=8 Identities=63% Similarity=1.676 Sum_probs=6.3
Q ss_pred eecCCCCC
Q 035641 275 FKCSGCGK 282 (314)
Q Consensus 275 ~~C~~C~~ 282 (314)
|.|++||.
T Consensus 2 f~c~kcgk 9 (28)
T d2dlqa2 2 FECPKCGK 9 (28)
T ss_dssp CBCTTTCC
T ss_pred Cccccchh
Confidence 67888885
No 28
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=45.03 E-value=3.9 Score=24.12 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=9.5
Q ss_pred EEEEcCCCCCcc
Q 035641 301 TYVTCAECNKRW 312 (314)
Q Consensus 301 ~f~~C~~C~~~w 312 (314)
.+++|..|||..
T Consensus 4 ~~~vC~vCGyi~ 15 (36)
T d1yuza2 4 KFHLCPICGYIH 15 (36)
T ss_dssp CEEECSSSCCEE
T ss_pred CEEECCCCCCEe
Confidence 478999999863
No 29
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=45.02 E-value=8.5 Score=22.98 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=20.4
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
...+|++||..=....+.+ ..-|-|..|.|
T Consensus 11 ~g~pC~~C~~~I~~~~~~g--------R~t~~Cp~CQ~ 40 (40)
T d1k3xa3 11 DGEPCERCGSIIEKTTLSS--------RPFYWCPGCQH 40 (40)
T ss_dssp TTSBCTTTCCBCEEEEETT--------EEEEECTTTCC
T ss_pred CCCccCcCCCEEEEEEECC--------CCCEEChhhCC
Confidence 3578999997655554432 34577999976
No 30
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=43.28 E-value=3 Score=27.31 Aligned_cols=25 Identities=16% Similarity=0.518 Sum_probs=17.6
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
......|+.||...- ...+|..||+
T Consensus 26 ~p~l~~C~~CG~~~l---------------pHrvC~~CG~ 50 (58)
T d2zjrz1 26 APNLTECPQCHGKKL---------------SHHICPNCGY 50 (58)
T ss_dssp CCCCEECTTTCCEEC---------------TTBCCTTTCB
T ss_pred CCceeECCCCCCCcc---------------ceeeCCCCCc
Confidence 345788999997332 2458889985
No 31
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=43.22 E-value=3.2 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=17.1
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
.....|+.||...- ...+|.+||+
T Consensus 27 p~l~~C~~CG~~~~---------------pHrvC~~CG~ 50 (59)
T d2j0151 27 PTLVPCPECKAMKP---------------PHTVCPECGY 50 (59)
T ss_dssp CCCBCCSSSSSCBC---------------TTCBCTTTCC
T ss_pred CceeECCCCCCccc---------------ceeECCCCCe
Confidence 45688999997332 2457999985
No 32
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=41.38 E-value=5.4 Score=26.05 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=20.3
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
...||.|++.=- |.. .....+|..||..|-
T Consensus 10 iL~CP~ck~~L~-~~~---------~~~~Lvc~~~~~~YP 39 (59)
T d2jnya1 10 VLACPKDKGPLR-YLE---------SEQLLVNERLNLAYR 39 (59)
T ss_dssp CCBCTTTCCBCE-EET---------TTTEEEETTTTEEEE
T ss_pred HhcCCCCCCEeE-EeC---------CCCEEEcCccCcccc
Confidence 468999997432 211 223688999998874
No 33
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=40.67 E-value=0.99 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=22.9
Q ss_pred eecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
..|..||-.++..+ |...++- ++|..||..|+
T Consensus 5 ~~C~nCgt~~Tp~W----Rr~~~G~---~lCNACGl~~~ 36 (66)
T d3gata_ 5 TVCSNCQTSTTTLW----RRSPMGD---PVCNACGLYYK 36 (66)
T ss_dssp CCCTTTCCCCCSSE----EECTTSC---EEEHHHHHHHH
T ss_pred CCCCCCCCCCCccc----ccCCCCC---cccchhHHHHH
Confidence 46999998887655 3455552 46999998774
No 34
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.54 E-value=6.1 Score=34.51 Aligned_cols=43 Identities=16% Similarity=0.415 Sum_probs=25.0
Q ss_pred ccceecCCCCCCceEE--Ee-eeccCCCCC-----CeEEEEcCCCCCcccC
Q 035641 272 TDQFKCSGCGKSNCSY--HQ-MQTRSADEP-----MTTYVTCAECNKRWKC 314 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~--~q-~q~rsade~-----mt~f~~C~~C~~~w~~ 314 (314)
.+.-+|+.||+..... ++ .+.=+.+|. -+-.|.|..||..=+|
T Consensus 117 vn~p~C~~Cg~~t~~~~~~~g~~~p~~~e~~~~a~~vE~y~C~~C~~~~RF 167 (320)
T d1x3za1 117 CNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRF 167 (320)
T ss_dssp CSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEE
T ss_pred cCCCCCCcCCCCcccccccccCCCCCchhhcCCCCeEEEEECCCCCCcccc
Confidence 3456899999876422 11 111122331 2578999999975443
No 35
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=38.47 E-value=5.9 Score=23.45 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=9.5
Q ss_pred eEEEEcCCCCCcc
Q 035641 300 TTYVTCAECNKRW 312 (314)
Q Consensus 300 t~f~~C~~C~~~w 312 (314)
...++|..|||..
T Consensus 3 ~~~~~C~vCG~i~ 15 (37)
T d1nnqa2 3 KKVYICPICGYTA 15 (37)
T ss_dssp SCEEECTTTCCEE
T ss_pred CcEEECCCCCCEe
Confidence 4578888888853
No 36
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.96 E-value=5 Score=22.13 Aligned_cols=9 Identities=56% Similarity=1.379 Sum_probs=6.9
Q ss_pred ceecCCCCC
Q 035641 274 QFKCSGCGK 282 (314)
Q Consensus 274 ~~~C~~C~~ 282 (314)
+|+|+.||.
T Consensus 2 ~ftc~hcgk 10 (30)
T d2ctda2 2 MFTCHHCGK 10 (30)
T ss_dssp CCCCSSSCC
T ss_pred ceechhHHH
Confidence 578888885
No 37
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.94 E-value=6.3 Score=22.58 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=7.8
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 8 y~C~~Cgk~F~ 18 (33)
T d1x6ea1 8 YGCVECGKAFS 18 (33)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCCEeC
Confidence 67777777664
No 38
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.70 E-value=6.8 Score=21.58 Aligned_cols=11 Identities=18% Similarity=0.736 Sum_probs=7.7
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 4 y~C~~C~k~F~ 14 (28)
T d1a1ia2 4 FQCRICMRNFS 14 (28)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCcCEec
Confidence 67777777664
No 39
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.07 E-value=12 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.488 Sum_probs=19.9
Q ss_pred ecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 276 KCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 276 ~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
-|+.|.+- +..|..-+.-++.|.|.+|+|.
T Consensus 6 FC~eCnNm------LYPKEDk~~~~L~yaCR~C~y~ 35 (49)
T d1twfi1 6 FCRDCNNM------LYPREDKENNRLLFECRTCSYV 35 (49)
T ss_dssp BCSSSCCB------CEEEEETTTTEEEEECSSSSCE
T ss_pred cChhcccc------cccCCccccCEEEEEccCCCce
Confidence 48888652 2234344556889999999874
No 40
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=35.04 E-value=7.8 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.655 Sum_probs=17.1
Q ss_pred eecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
-+||.|+..+++ +| .|-.||+.+
T Consensus 3 G~CP~C~~~~a~--------GD-------qCe~CG~~~ 25 (35)
T d1pfva3 3 GTCPKCKSPDQY--------GD-------NCEVCGATY 25 (35)
T ss_dssp EECTTTCCSSEE--------TT-------BCTTTCCBC
T ss_pred eECCCCCCcccc--------cc-------cHHHcCCcC
Confidence 479999998884 44 377788764
No 41
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.82 E-value=5 Score=23.60 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=6.9
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|+
T Consensus 13 y~C~~CgK~F~ 23 (38)
T d2cota2 13 YKCDECGKSFS 23 (38)
T ss_dssp SBCSSSCCBCS
T ss_pred EecCCCCceee
Confidence 66666666654
No 42
>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}
Probab=33.49 E-value=7.4 Score=25.36 Aligned_cols=30 Identities=10% Similarity=0.284 Sum_probs=20.0
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCccc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRWK 313 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 313 (314)
...||.|++.= .|.. + ....+|..|+..|-
T Consensus 7 iL~CP~ck~~L-~~~~------~---~~~Lvc~~~~l~YP 36 (59)
T d2hf1a1 7 ILVCPLCKGPL-VFDK------S---KDELICKGDRLAFP 36 (59)
T ss_dssp ECBCTTTCCBC-EEET------T---TTEEEETTTTEEEE
T ss_pred hhcCCCCCCee-eEeC------C---CCEEecCCcCcccc
Confidence 36899999844 3321 1 22588999998773
No 43
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=33.27 E-value=6.4 Score=21.61 Aligned_cols=7 Identities=71% Similarity=1.640 Sum_probs=6.0
Q ss_pred ecCCCCC
Q 035641 276 KCSGCGK 282 (314)
Q Consensus 276 ~C~~C~~ 282 (314)
.||+|++
T Consensus 3 ~CpRC~~ 9 (28)
T d1ibia1 3 KCSRCGD 9 (28)
T ss_dssp ECTTTSS
T ss_pred cCcccch
Confidence 6999986
No 44
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.09 E-value=7.3 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.589 Sum_probs=21.0
Q ss_pred CccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 271 TTDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 271 ~t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
....|.|++||+....+ +- +...+.-..|..|+.
T Consensus 123 ~~~~~~C~~C~~~~~~~-~~-----~~~~~~p~~C~~C~~ 156 (239)
T d1ltla_ 123 VKAVFECRGCMRHHAVT-QS-----TNMITEPSLCSECGG 156 (239)
T ss_dssp EEEEEEETTTCCEEEEE-CS-----SSSCCCCSCCTTTCC
T ss_pred EEEEEECCCCCceEEEE-ec-----CCeecCCccCCCCCC
Confidence 34568999999765433 21 122334467999975
No 45
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=28.93 E-value=7.1 Score=21.59 Aligned_cols=11 Identities=18% Similarity=0.818 Sum_probs=6.9
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 3 ~~C~~C~k~F~ 13 (29)
T d2adra1 3 FVCEVCTRAFA 13 (29)
T ss_dssp BCCTTTCCCBS
T ss_pred CCCCCCCCCCC
Confidence 56777776653
No 46
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=28.66 E-value=12 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.708 Sum_probs=17.4
Q ss_pred ccceecCCCCCCceEEEeeec
Q 035641 272 TDQFKCSGCGKSNCSYHQMQT 292 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~ 292 (314)
.+...||.||..+..|..+..
T Consensus 38 P~dW~CP~Cga~K~~F~~~~~ 58 (70)
T d1dx8a_ 38 SDSFMCPACRSPKNQFKSIKK 58 (70)
T ss_dssp CTTCBCTTTCCBGGGEEECCC
T ss_pred CCCCCCcCCCCcHHHheEccc
Confidence 466899999999999987754
No 47
>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}
Probab=28.58 E-value=16 Score=23.63 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=19.7
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
...||.|++.=. |.. .....+|..|+..|
T Consensus 6 iL~CP~ck~~L~-~~~---------~~~~Lvc~~~~laY 34 (59)
T d2pk7a1 6 ILACPICKGPLK-LSA---------DKTELISKGAGLAY 34 (59)
T ss_dssp TCCCTTTCCCCE-ECT---------TSSEEEETTTTEEE
T ss_pred heECCCCCCcce-EeC---------CCCEEecCCcCccc
Confidence 367999997543 321 12368999999876
No 48
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.85 E-value=9.4 Score=32.70 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=23.8
Q ss_pred ccceecCCCCCCceEEEeee-ccCCCC-----CCeEEEEcCCCCCcc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQ-TRSADE-----PMTTYVTCAECNKRW 312 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q-~rsade-----~mt~f~~C~~C~~~w 312 (314)
++..+|+.||+. +.+.... ....+| .-.-.|.|..||..=
T Consensus 79 v~~ppC~~C~~~-~~~~~~~~~p~~~e~~~ga~rVE~~~C~~C~~~~ 124 (287)
T d2f4ma1 79 VNNIVCSKCGGE-TRSRDEALLPNDDELKWGAKNVENHYCDACQLSN 124 (287)
T ss_dssp CSSCCCTTTCCC-CEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEE
T ss_pred cCCCCCcccCCc-cccccCCCCCChhhhccCCceEEEEEcCCCCCce
Confidence 556799999985 3333211 112222 235688999999753
No 49
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.66 E-value=11 Score=21.76 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=7.8
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|+
T Consensus 8 y~C~~C~k~F~ 18 (35)
T d1srka_ 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccc
Confidence 67777777664
No 50
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.63 E-value=6.3 Score=21.89 Aligned_cols=10 Identities=50% Similarity=1.271 Sum_probs=6.3
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||..|
T Consensus 3 y~C~~C~k~F 12 (29)
T d1sp1a_ 3 FACPECPKRF 12 (29)
T ss_dssp SCCTTTTCCC
T ss_pred EECCcCCCee
Confidence 5566676655
No 51
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=27.01 E-value=7.5 Score=25.05 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=9.9
Q ss_pred CccceecCCCCCCc
Q 035641 271 TTDQFKCSGCGKSN 284 (314)
Q Consensus 271 ~t~~~~C~~C~~~~ 284 (314)
.+....||.||...
T Consensus 24 ~~~~~~c~~CG~~~ 37 (56)
T d2qam01 24 VTSLSVDKTSGEKH 37 (56)
T ss_dssp CSCCEECSSSCCEE
T ss_pred CCceeECCCCCCCc
Confidence 35567799999743
No 52
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.98 E-value=11 Score=21.71 Aligned_cols=11 Identities=27% Similarity=1.075 Sum_probs=7.8
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 9 y~C~~C~k~F~ 19 (36)
T d1x6ha2 9 YACSHCDKTFR 19 (36)
T ss_dssp EECSSSSCEES
T ss_pred EECCCCCCCcC
Confidence 77777777653
No 53
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=26.85 E-value=10 Score=23.31 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=13.3
Q ss_pred ccceecCCCCCCceEE
Q 035641 272 TDQFKCSGCGKSNCSY 287 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~ 287 (314)
.+.+.||.||..+..|
T Consensus 27 P~dw~CP~C~a~K~~F 42 (45)
T d6rxna_ 27 PDDWCCPVCGVSKDQF 42 (45)
T ss_dssp CTTCBCTTTCCBGGGE
T ss_pred CCCCCCcCCCCcHHHc
Confidence 4678999999988766
No 54
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=26.81 E-value=24 Score=21.48 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=19.0
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
...+|++|+..=....+.+ ..-|-|..|..+
T Consensus 17 ~g~~C~~C~~~I~~~~~~g--------R~t~~Cp~CQkr 47 (47)
T d1tdza3 17 TGEKCSRCGAEIQKIKVAG--------RGTHFCPVCQQK 47 (47)
T ss_dssp TTSBCTTTCCBCEEEEETT--------EEEEECTTTSCC
T ss_pred CCCCcCCCCcEEEEEEECC--------cccEECccccCc
Confidence 3468999987544333322 234669998753
No 55
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=24.92 E-value=15 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.702 Sum_probs=15.3
Q ss_pred ccceecCCCCCCceEEEee
Q 035641 272 TDQFKCSGCGKSNCSYHQM 290 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~ 290 (314)
...+.||.||..+..|..+
T Consensus 35 P~dw~CP~C~a~K~~F~~~ 53 (56)
T d1s24a_ 35 PDDWCCPDCGATKEDYVLY 53 (56)
T ss_dssp CTTCCCSSSCCCGGGEEEC
T ss_pred CCCCCCcCCCCcHHHceEc
Confidence 4668999999999887654
No 56
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.88 E-value=13 Score=22.34 Aligned_cols=10 Identities=40% Similarity=0.999 Sum_probs=8.5
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|..||.+|
T Consensus 6 YeC~~C~KrF 15 (44)
T d2csha2 6 YECNICAKRF 15 (44)
T ss_dssp EECSSSCCEE
T ss_pred eeccchhhhh
Confidence 8899999874
No 57
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.85 E-value=14 Score=20.22 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.9
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..|+..|+
T Consensus 2 y~C~~CnF~FK 12 (29)
T d1bboa2 2 YHCTYCNFSFK 12 (29)
T ss_dssp EECSSSSCEES
T ss_pred cccceeeeeEe
Confidence 78999987765
No 58
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.70 E-value=13 Score=21.42 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=7.0
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 9 ~~C~~C~k~F~ 19 (36)
T d2ct1a2 9 YECYICHARFT 19 (36)
T ss_dssp EECTTTCCEES
T ss_pred EeCCCCccccc
Confidence 66777776653
No 59
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=24.39 E-value=12 Score=21.84 Aligned_cols=23 Identities=26% Similarity=0.726 Sum_probs=16.1
Q ss_pred eecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCcc
Q 035641 275 FKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKRW 312 (314)
Q Consensus 275 ~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 312 (314)
-+||.||..+++ +|. |-.||+.+
T Consensus 3 G~CP~C~~~~a~--------GDq-------Ce~CG~~~ 25 (35)
T d1rqga3 3 GTCPYCGAEDQK--------GDQ-------CEVCGRPL 25 (35)
T ss_dssp SBCSSSCCSCCC--------TTT-------CSSSCCCC
T ss_pred EECCCCCCCccc--------Ccc-------hhhcCCcc
Confidence 479999988773 443 67777654
No 60
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=23.72 E-value=18 Score=27.27 Aligned_cols=32 Identities=16% Similarity=0.444 Sum_probs=22.6
Q ss_pred ccceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCCc
Q 035641 272 TDQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNKR 311 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 311 (314)
.....|..||.....||-... + -++|.+|++.
T Consensus 68 P~l~~C~~cg~~~~~~f~~~~-----G---g~~C~~c~~~ 99 (157)
T d1u5ka2 68 PQTARCARCGAPDPEHPDPLG-----G---QLLCSKCAAL 99 (157)
T ss_dssp CCCSBCTTTCCBSCCEECTTT-----S---SEECTTTCSS
T ss_pred CChhhHhcCCCCCCCcccccC-----C---eeECCCCCCc
Confidence 344679999998888875422 2 3689999864
No 61
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.51 E-value=10 Score=22.02 Aligned_cols=11 Identities=18% Similarity=1.044 Sum_probs=6.6
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||.+|.
T Consensus 12 y~C~~C~k~F~ 22 (37)
T d1p7aa_ 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred eEeCCCCCEec
Confidence 56666666553
No 62
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=23.32 E-value=15 Score=23.31 Aligned_cols=18 Identities=22% Similarity=0.684 Sum_probs=14.4
Q ss_pred ccceecCCCCCCceEEEe
Q 035641 272 TDQFKCSGCGKSNCSYHQ 289 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q 289 (314)
...+.||.||..+..|..
T Consensus 34 P~dw~CP~C~a~K~~F~~ 51 (53)
T d1iroa_ 34 PDDWVCPLCGVGKDQFEE 51 (53)
T ss_dssp CTTCBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCCCcHHHcEE
Confidence 466899999999887753
No 63
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=23.29 E-value=17 Score=22.26 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=18.8
Q ss_pred ceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCCC
Q 035641 274 QFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECNK 310 (314)
Q Consensus 274 ~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~~ 310 (314)
.-.||=|.-..-++-.++.- --| ...|.+||-
T Consensus 3 ~W~CPICm~~Ne~~~e~~~n--~~~---~p~C~nCGV 34 (47)
T d2j9ub1 3 TWVCPICMVSNETQGEFTKD--TLP---TPICINCGV 34 (47)
T ss_dssp EEECTTTCCEEEESSCCCTT--CSS---CCBCTTTCC
T ss_pred ceecceeeeeccceeeeccC--CCC---CCcccccCC
Confidence 35688888776666544321 112 246888873
No 64
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.07 E-value=15 Score=20.08 Aligned_cols=10 Identities=20% Similarity=1.002 Sum_probs=7.1
Q ss_pred EEcCCCCCcc
Q 035641 303 VTCAECNKRW 312 (314)
Q Consensus 303 ~~C~~C~~~w 312 (314)
|.|.-||.+|
T Consensus 4 f~C~~CgrkF 13 (28)
T d1a1ia3 4 FACDICGRKF 13 (28)
T ss_dssp EECTTTCCEE
T ss_pred cccchhhhhh
Confidence 6777787765
No 65
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.00 E-value=15 Score=21.66 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=7.8
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|..||..|.
T Consensus 6 y~C~~Cgk~F~ 16 (39)
T d2epsa1 6 YICQSCGKGFS 16 (39)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCCcC
Confidence 67777777664
No 66
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.68 E-value=14 Score=20.03 Aligned_cols=9 Identities=56% Similarity=1.317 Sum_probs=6.2
Q ss_pred EcCCCCCcc
Q 035641 304 TCAECNKRW 312 (314)
Q Consensus 304 ~C~~C~~~w 312 (314)
+|..||..|
T Consensus 4 vc~ecgkaf 12 (28)
T d1ubdc2 4 VCAECGKAF 12 (28)
T ss_dssp ECTTTCCEE
T ss_pred hHHHHhHHH
Confidence 577777655
No 67
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.37 E-value=33 Score=20.69 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=18.6
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCC
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECN 309 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~ 309 (314)
...+|++|+..=....+.+ ..-|-|..|.
T Consensus 17 ~g~~C~~C~~~I~~~~~~g--------R~t~~Cp~CQ 45 (46)
T d1r2za3 17 QGNPCKRCGTPIEKTVVAG--------RGTHYCPRCQ 45 (46)
T ss_dssp TTSBCTTTCCBCEEEEETT--------EEEEECTTTC
T ss_pred CCCccCCCCCeEEEEEECC--------CcCEEChhhC
Confidence 3468999998654444432 3356688885
No 68
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=22.23 E-value=34 Score=20.47 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=19.5
Q ss_pred cceecCCCCCCceEEEeeeccCCCCCCeEEEEcCCCC
Q 035641 273 DQFKCSGCGKSNCSYHQMQTRSADEPMTTYVTCAECN 309 (314)
Q Consensus 273 ~~~~C~~C~~~~~~~~q~q~rsade~mt~f~~C~~C~ 309 (314)
...+|++|+..=....+.+ ..-|-|..|.
T Consensus 15 ~g~~C~~C~~~I~~~~~~~--------R~t~~Cp~CQ 43 (44)
T d1k82a3 15 KGEPCRVCGTPIVATKHAQ--------RATFYCRQCQ 43 (44)
T ss_dssp TTSBCTTTCCBCEEEEETT--------EEEEECTTTC
T ss_pred CCCCcCCCCCEEEEEEECC--------cccEEChhhc
Confidence 3468999998655554443 3357788885
No 69
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.71 E-value=16 Score=23.12 Aligned_cols=18 Identities=22% Similarity=0.763 Sum_probs=14.7
Q ss_pred ccceecCCCCCCceEEEe
Q 035641 272 TDQFKCSGCGKSNCSYHQ 289 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~q 289 (314)
...+.||.||..+..|..
T Consensus 33 P~dw~CP~C~a~K~~F~~ 50 (53)
T d1brfa_ 33 PDDWVCPICGAPKSEFEK 50 (53)
T ss_dssp CTTCBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCCCcHHHceE
Confidence 467899999999887754
No 70
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=21.65 E-value=17 Score=22.95 Aligned_cols=17 Identities=29% Similarity=0.815 Sum_probs=13.8
Q ss_pred ccceecCCCCCCceEEE
Q 035641 272 TDQFKCSGCGKSNCSYH 288 (314)
Q Consensus 272 t~~~~C~~C~~~~~~~~ 288 (314)
...+.||.||..+..|-
T Consensus 34 P~~w~CP~C~a~K~~F~ 50 (52)
T d2dsxa1 34 PDDWACPVCGASKDAFE 50 (52)
T ss_dssp CTTCBCTTTCCBGGGEE
T ss_pred CCCCCCcCCCCcHHHhc
Confidence 46689999999988763
No 71
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=21.45 E-value=16 Score=22.27 Aligned_cols=13 Identities=15% Similarity=0.767 Sum_probs=11.1
Q ss_pred ecCCCCCCceEEE
Q 035641 276 KCSGCGKSNCSYH 288 (314)
Q Consensus 276 ~C~~C~~~~~~~~ 288 (314)
.||.|++...+|-
T Consensus 26 ~CPvC~~p~~~Fe 38 (44)
T d1lkoa2 26 LCPACAHPKAHFE 38 (44)
T ss_dssp BCTTTCCBGGGEE
T ss_pred cCCCCCCcHHHHe
Confidence 7999999888763
No 72
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.26 E-value=11 Score=21.03 Aligned_cols=11 Identities=36% Similarity=0.957 Sum_probs=5.5
Q ss_pred EEcCCCCCccc
Q 035641 303 VTCAECNKRWK 313 (314)
Q Consensus 303 ~~C~~C~~~w~ 313 (314)
|.|.-|+.||+
T Consensus 4 ~~cpic~qrfk 14 (32)
T d2epqa1 4 YSCPVCGLRFK 14 (32)
T ss_dssp SEETTTTEECS
T ss_pred cccchHHHHhh
Confidence 34555555543
Done!