BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035643
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA G+L++V L+ ++ A+D +G+ PLH+AA G++ V+K L++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFY 138
+ G T LH LE ++LL+E D VN+KD NG T LHLA +EV
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 139 M 139
+
Sbjct: 119 L 119
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 50 DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRN 109
+G+ PLH+AA G++ V+K L++ + G T LH LE ++LL+E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 110 DHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
D VN+KD NG T LHLA +EV +
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEVVKL 86
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D +PLHLAA G+L++V L+ ++ A+D +G+ PLH+AA G++ V+K L++
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA 123
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 11/121 (9%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVN-PEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRP 75
+PLH+AA +G+++ VL L+ + C + G PLH+AA G V V + L++ P
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 76 QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
AA + G+T LH V++N L+ ++LL+ +S NG T LH+A + QVE
Sbjct: 173 NAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWNGYTPLHIAAKQNQVE 226
Query: 136 V 136
V
Sbjct: 227 V 227
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA +G+ ++V L+S G PLH+ A G+V V L+K
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIK---HGV 302
Query: 79 LI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
++ G T LH +Y ++ ++ L++ + D VN+K G + LH A + ++
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDI 359
Query: 137 FYMDFDRNNMDNNI 150
+ N +
Sbjct: 360 VTLLLKNGASPNEV 373
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 36/166 (21%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQ 76
+PLH+AA G+ ++ L+ N A+ D + PLH AA G+ N++K L++ P
Sbjct: 49 TPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 77 AA--------------------LILME----------RGVTILHACVNYNQLESLRLLVE 106
A L L+E +G T LH Y ++ LL+E
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 107 IRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFY 152
R+ H N+ NG T LH+AV +++ + R ++ +
Sbjct: 168 -RDAHP--NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLH+A LDIV KL+ + +G PLHIAA + V V + L++ A
Sbjct: 181 TPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
++ GVT LH E + LL+ + + N +G T LHL E V V
Sbjct: 240 AESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGN---KSGLTPLHLVAQEGHVPV 293
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 19 SPLHLAAAKGYLDIVLKLV--SVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV----K 72
+PLH+A+ G+L IV L+ +P + ++ + PLH+AA G+ V K L+ K
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 73 VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
V +A + T LH ++LL+E ++ N G T LH+A E
Sbjct: 73 VNAKA-----KDDQTPLHCAARIGHTNMVKLLLE---NNANPNLATTAGHTPLHIAAREG 124
Query: 133 QVEV 136
VE
Sbjct: 125 HVET 128
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
SPLH AA +G+ DIV L+ N DG PL IA G ++V L V + +
Sbjct: 346 SPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404
Query: 79 LILME 83
+L+
Sbjct: 405 FVLVS 409
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 53 NPLHIAAIRGNVNVLKELVK--VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
PLH+A+ G++ ++K L++ P + + +E T LH E + L++ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE---TPLHMAARAGHTEVAKYLLQNKAK 72
Query: 111 HEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCG 155
VN+K + T LH A + + + NN + N+ G
Sbjct: 73 ---VNAKAKDDQTPLHCAARIGHTNMVKLLLE-NNANPNLATTAG 113
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA G++ +++ L+K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T LH LE + +L++ D VN++D G T LA+ E ++
Sbjct: 96 AKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAIREGHEDI 149
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A+D DG PLH+AA G++ +++ L+K
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T LH LE + +L++ D VN+KD +G T LHLA E +E+
Sbjct: 67 D-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEI 116
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAR 110
Query: 61 RGNVNVLKELVKV 73
G++ +++ L+K
Sbjct: 111 EGHLEIVEVLLKA 123
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A+D GK P +A
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIR 143
Query: 61 RGNVNVLKELVKV 73
G+ ++ + L K
Sbjct: 144 EGHEDIAEVLQKA 156
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
DS +PLHLAA G+ ++V L+S + A+D DGK PLH+AA G+ V+K L+
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 73 -VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
P A G T LH E ++LL+ D N+ D +G T L LA
Sbjct: 93 GADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQGAD---PNTSDSDGRTPLDLAREH 146
Query: 132 KQVEVFYM 139
EV +
Sbjct: 147 GNEEVVKL 154
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALIL 81
AA G D V L+ N A D DGK PLH+AA G+ V+K L+ P A
Sbjct: 11 AAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK--- 66
Query: 82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
G T LH E ++LL+ D N+KD +G T LHLA EV +
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGAD---PNAKDSDGKTPLHLAAENGHKEVVKL 121
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
DS +PLHLAA G+ ++V L+S + + D DG+ PL +A GN V+K L K
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS-DSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
DS +PLH AA +G+ +IV L+S ++ A+D DG+ PLH AA G+ ++K L+
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
+ G T LH E ++LL+ D VN+ D +G T L LA
Sbjct: 93 GADVNAKDSD-GRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDSDGRTPLDLA 143
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME 83
AA G D V L+ N A D DG+ PLH AA G+ ++K L+ +
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
G T LH E ++LL+ D VN+KD +G T LH A E E+ +
Sbjct: 70 -GRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEIVKL 121
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
DS +PLH AA +G+ +IV L+S ++ + D DG+ PL +A GN ++K L K
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEIVKLLEK 157
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
D + ++PLHLAA G+ +IV L+ ++ ARD DG PLH+AA G++ +++ L+K
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 73 ---VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
V Q A G+T LH + LE + +L++ D VN++D G T +++
Sbjct: 103 GADVNAQDAY-----GLTPLHLAADRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ +PLHLAA G+L+IV L+ ++ A+D G PLH+AA
Sbjct: 64 EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAAD 122
Query: 61 RGNVNVLKELVK 72
RG++ +++ L+K
Sbjct: 123 RGHLEIVEVLLK 134
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G PLH+AA G+ +++ L+K
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDT 78
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T LH + LE + +L++ D VN++D G T LHLA +E+
Sbjct: 79 D-GWTPLHLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLEI 128
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ +PLHLAA +G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 156 NGNEDLAEILQKL 168
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA G++ +++ L+K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
+ G T LH LE + +L++ D VN++D G T LA+
Sbjct: 96 AKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A+D DG PLH+AA G++ +++ L+K
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T LH LE + +L++ D VN+KD +G T LHLA E +E+
Sbjct: 67 D-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEI 116
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAR 110
Query: 61 RGNVNVLKELVKV 73
G++ +++ L+K
Sbjct: 111 EGHLEIVEVLLKA 123
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A+D GK P +A
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAID 143
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K
Sbjct: 144 NGNEDIAEVLQKA 156
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+D+ +PLHLAA G+L+IV L+ ++ A D+ G PLH+AA+ G++ +++ L+K
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 73 VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
M G T LH + LE + +L++ D VN++D G T +++
Sbjct: 102 YGADVNAFDM-TGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALI 80
L AA+ D ++++ N A D G PLH+AA+ G++ +++ L+K AA +
Sbjct: 19 LEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV 78
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G T LH LE + +L++ D VN+ D GST LHLA E +E+
Sbjct: 79 Y---GFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGHLEI 128
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA G+L+IV L+ ++ A D+ G PLH+AA
Sbjct: 64 EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAAD 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 EGHLEIVEVLLK 134
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D ++PLHLAA +G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 61 RGNVNVLK 68
GN ++ K
Sbjct: 156 NGNEDLAK 163
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
DS +PLH AA G+ ++V L+S ++ A+D DG+ PLH AA G+ V+K L+
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLI-- 90
Query: 74 RPQAALILME--RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
+ A + + G T LH E ++LL+ D VN+ D +G T L LA
Sbjct: 91 -SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREH 146
Query: 132 KQVEVFYM 139
EV +
Sbjct: 147 GNEEVVKL 154
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME 83
AA G D V L+ N A D DG+ PLH AA G+ V+K L+ + A + +
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLI---SKGADVNAK 66
Query: 84 --RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
G T LH E ++LL+ D VN+KD +G T LH A EV +
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKL 121
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
DS +PLH AA G+ ++V L+S ++ + D DG+ PL +A GN V+K L K
Sbjct: 100 DSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA G++ +++ L+K
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
+ G T LH LE + +L++ D VN++D G T +++
Sbjct: 108 AKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTAFDISI 154
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A+D DG PLH+AA G++ +++ L+K
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 78
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T LH LE + +L++ D VN+KD +G T LHLA E +E+
Sbjct: 79 D-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEI 128
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A+D DG PLH+AA
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAR 122
Query: 61 RGNVNVLKELVKV 73
G++ +++ L+K
Sbjct: 123 EGHLEIVEVLLKA 135
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISID 155
Query: 61 RGN 63
GN
Sbjct: 156 NGN 158
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D+ +PLHLAA G+L+IV L+ ++ A D+ G PLH+AA G++ +++ L+K
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEIVEVLLK- 101
Query: 74 RPQAALILMER-GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
A + M+ G+T LH + LE + +L++ D VN++D G T +++
Sbjct: 102 -NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALI 80
L AA+ D ++++ N A D G PLH+AA G++ +++ L+K A+ +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDV 78
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G T LH + LE + +L++ D VN+ D +G T LHLA +E+
Sbjct: 79 F---GYTPLHLAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLAAKWGYLEI 128
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA G+L+IV L+ N A D DG PLH+AA
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAK 122
Query: 61 RGNVNVLKELVK 72
G + +++ L+K
Sbjct: 123 WGYLEIVEVLLK 134
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + +DS +PLHLAA GYL+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 156 NGNEDLAEILQKL 168
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D+ +PLHLAA+ G+L+IV L+ N A D+ G PLH+AA G++ +++ L+K
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH Y LE + +L++ D VN++D G T +++
Sbjct: 103 GADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D DG PLH+AA G++ +++ L+K +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL 78
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G+T LH LE + +L++ D VN+ D++G T LHLA +E+
Sbjct: 79 -TGITPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEI 128
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAAA G+L+IV L+ ++ A D DG PLH+AA
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAK 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 YGHLEIVEVLLK 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK----VRPQAA 78
L AA+ D ++++ N A D+ G PLH+AA G++ +++ L+K V
Sbjct: 19 LEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
L G T LH ++ LE + +L++ D VN+KDDNG T LHLA +E+
Sbjct: 79 L-----GSTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEI 128
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA G+L+IV L+ N A D G PLH+AA G++ +++ L+K
Sbjct: 49 TPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
+ G+T LH N LE + +L++ D VN++D G T +++
Sbjct: 108 -AKDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ ++PLHLAA G+L+IV L+ N A+D +G PLH+AA
Sbjct: 64 EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVNAKDDNGITPLHLAAN 122
Query: 61 RGNVNVLKELVK 72
RG++ +++ L+K
Sbjct: 123 RGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIN 155
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 156 NGNEDLAEILQKL 168
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
D+ +PLHLAA G+L+IV L+ N A D G PLH+AA RG++ +++ L+K
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 73 ---VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
V + G T LH + LE + +L++ D VN++D G T +++
Sbjct: 103 GADVNADDTI-----GSTPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + LD ++PLHLAA +G+L+IV L+ ++ A D G PLH+AA
Sbjct: 64 EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAAD 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 TGHLEIVEVLLK 134
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G PLH+AA G++ +++ L+K +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF 78
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G T LH LE + +L++ D VN+ D GST LHLA +E+
Sbjct: 79 -SGSTPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEI 128
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ ++PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 61 RGN 63
GN
Sbjct: 156 NGN 158
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
IL A D +PLH+AAA G+L+IV L+ N A D +G PLH+AA
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTNGTTPLHLAASL 78
Query: 62 GNVNVLKELVK----VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSK 117
G++ +++ L+K V + A G+T L+ + LE + +L++ D VN++
Sbjct: 79 GHLEIVEVLLKYGADVNAKDA-----TGITPLYLAAYWGHLEIVEVLLKHGAD---VNAQ 130
Query: 118 DDNGSTILHLAV 129
D G T +++
Sbjct: 131 DKFGKTAFDISI 142
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L R +D+ +PLHLAA+ G+L+IV L+ ++ A+D G PL++AA
Sbjct: 52 EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAY 110
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 111 WGHLEIVEVLLK 122
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G+ PLH+AA G++ +++ L++ +
Sbjct: 7 LEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV-D 65
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G T LH + LE + +L++ D VN+KD G T L+LA +E+
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGAD---VNAKDATGITPLYLAAYWGHLEI 116
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D +PLHLAA KG+L+IV L+ ++ A D G PLH+AA+ G++ +++ L+K
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH + LE + +L++ D VN++D G T +++
Sbjct: 103 GADVNAT-DTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALI 80
L AA+ D ++++ N A D GK PLH+AAI+G++ +++ L+K AA
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA-- 76
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T LH Y LE + +L++ D VN+ D G T LHLA +E+
Sbjct: 77 -DKMGDTPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEI 128
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA G+L+IV L+ N A D G PLH+AA
Sbjct: 64 EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAAD 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 AGHLEIVEVLLK 134
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ +PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 156 NGNEDLAEILQKL 168
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 38/121 (31%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA G+L++V L+ ++ A+D +G+ PLH+AA G++ V+K
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVK---------- 52
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFY 138
+L+E G VN+KD NG T LHLA +EV
Sbjct: 53 -LLLEAGAD--------------------------VNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 139 M 139
+
Sbjct: 86 L 86
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D +PLHLAA G+L++V L+ ++ A+D +G+ PLH+AA G++ V+K L++
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 85 GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
G T LH LE ++LL+E D VN+KD NG T LHLA +EV +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKL 53
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
DS +PLH AA G+ +IV L+S + A+D DG+ PLH AA G+ ++K L+
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 73 -VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
P A G T LH E ++LL+ D N+ D +G T L LA
Sbjct: 93 GADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGAD---PNTSDSDGRTPLDLAREH 146
Query: 132 KQVEVFYM 139
E+ +
Sbjct: 147 GNEEIVKL 154
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALIL 81
AA G D V L+ N A D DG+ PLH AA G+ ++K L+ P A
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK--- 66
Query: 82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
G T LH E ++LL+ D N+KD +G T LH A E+ +
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGAD---PNAKDSDGRTPLHYAAENGHKEIVKL 121
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
DS +PLH AA G+ +IV L+S + + D DG+ PL +A GN ++K L K
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS-DSDGRTPLDLAREHGNEEIVKLLEK 157
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D+ +PLHLAA G+L+IV L+ ++ A DI G PLH+AA+ G++ +++ L+K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
+ G T LH LE + +L++ D VN++D G T +++
Sbjct: 103 GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + +D ++PLHLAA G+L+IV L+ ++ A D G PLH+AAI
Sbjct: 64 EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAI 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 MGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G PLH+AA G++ +++ L+K I +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G T LH LE + +L++ D VN+ D G T LHLA + +E+
Sbjct: 79 -XGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEI 128
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D+ +PLHLAA G+L+IV L+ ++ A DI G PLH+AA+ G++ +++ L+K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
+ G T LH LE + +L++ D VN++D G T +++
Sbjct: 103 GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + +D ++PLHLAA G+L+IV L+ ++ A D G PLH+AAI
Sbjct: 64 EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAI 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 MGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA-ALIL 81
L AA+ D ++++ N A D G PLH+AA G++ +++ L+K A+ +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
M G T LH LE + +L++ D VN+ D G T LHLA + +E+
Sbjct: 79 M--GSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEI 128
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK----VRPQAA 78
L AA+ D ++++ N ARD G PLH+AA G++ +++ L+K V + +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDS 78
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
L GVT LH LE + +L++ D VN+ D +G T LHLA +E+
Sbjct: 79 L-----GVTPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEI 128
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA G+L+IV L+ N A+D G PLH+AA RG++ +++ L+K
Sbjct: 49 TPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH LE + +L++ D VN++D G T +++
Sbjct: 108 -ASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + DS +PLHLAA +G+L+IV L+ N A D G PLH+AA
Sbjct: 64 EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLAAK 122
Query: 61 RGNVNVLKELVK 72
RG++ +++ L+K
Sbjct: 123 RGHLEIVEVLLK 134
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHL G+L+I+ L+ ++ A D G PLH+AA RG++ +++ L+K
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
+ +G T LH LE + +L++ D VN++D G T +++
Sbjct: 108 -AMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA +G+L+IV L+ ++ A D G PLH+AA
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAE 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 DGHLEIVEVLLK 134
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G PLH+ G++ +++ L+K
Sbjct: 19 LEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN-ASD 77
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T LH LE + +L++ D VN+ D G T LHLA + +E+
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGHLEI 128
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + +D + +PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 156 NGNEDLAEILQKL 168
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D +PLHLAAA G L+IV L+ N A D G PLH+AA G++ +++ L+K
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSAGITPLHLAAYDGHLEIVEVLLK- 93
Query: 74 RPQAALILMER-GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
A + +R G T LH QLE + +L++ D VN++D G T +++ +
Sbjct: 94 -HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDISINQG 149
Query: 133 Q 133
Q
Sbjct: 150 Q 150
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + DS +PLHLAA G+L+IV L+ ++ A D G PLH+AA+
Sbjct: 56 EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAAL 114
Query: 61 RGNVNVLKELVK----VRPQAALILMERGVTILHACVNYNQ 97
G + +++ L+K V Q AL G+T +N Q
Sbjct: 115 SGQLEIVEVLLKHGADVNAQDAL-----GLTAFDISINQGQ 150
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME 83
AAA G D V +++ N A D +G PLH+AA G + +++ L+K
Sbjct: 13 AAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDS 70
Query: 84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR 143
G+T LH LE + +L++ D VN+ D G T LHLA L Q+E+ + +
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQLEIVEV-LLK 126
Query: 144 NNMDNNIFYGCGLSGY 159
+ D N GL+ +
Sbjct: 127 HGADVNAQDALGLTAF 142
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+D +PLHLAA +G+L+IV L+ ++ ARDI G+ PLH+AA G++ +++ L++
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALI 80
L A + D ++++ N A D G PLH+AA RG++ +++ L+K A I
Sbjct: 19 LEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI 78
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH LE + +L+E D VN++D G T +++
Sbjct: 79 W---GRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 64 EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISID 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ GVT LH LE + +L++ D VN++D G T LHLA +E+
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLAATVGHLEI 95
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ A+PLHLAA G+L+IV L+ ++ A+D +G PLH+AA
Sbjct: 64 EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAY 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 DGHLEIVEVLLK 134
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA G+L+IV L+ ++ A D G PLH+AA G++ +++ L+K
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
E G T LH LE + +L++ D VN++D G T +++
Sbjct: 108 AKDYE-GFTPLHLAAYDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G PLH+AA G++ +++ L+K
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AWD 77
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G T LH + LE + +L++ D VN+KD G T LHLA + +E+
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEI 128
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 156 NGNEDLAEILQKL 168
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
+PLHLAA G+L+IV L+ N A D G PLH+AA RG++ V++ L+K
Sbjct: 49 TPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH N LE + +L++ D VN++D G T +++
Sbjct: 108 -ANDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK----VRPQAA 78
L AA+ D ++++ N A D G PLH+AA G++ +++ L+K V +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDS 78
Query: 79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
L GVT LH + LE + +L++ D VN+ D NG T LHLA +E+
Sbjct: 79 L-----GVTPLHLAADRGHLEVVEVLLKNGAD---VNANDHNGFTPLHLAANIGHLEI 128
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + DS +PLHLAA +G+L++V L+ N A D +G PLH+AA
Sbjct: 64 EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAAN 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 IGHLEIVEVLLK 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D+ +PLHLAA G+L+IV L+ N A D G PL +AA+ G++ +++ L+K
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
ME G T LH + LE + +L++ D VN++D G T +++
Sbjct: 103 GADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G PLH+AA G++ +++ L+K +
Sbjct: 19 LEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-D 77
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G+T L + LE + +L++ D VN+ D G T LHLA + +E+
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEI 128
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + +D +PL LAA G+L+IV L+ N A D++G PLH+AA+
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAM 122
Query: 61 RGNVNVLKELVK 72
G++ +++ L+K
Sbjct: 123 FGHLEIVEVLLK 134
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 23/155 (14%)
Query: 17 KASPLHLAAAKGYLDIVLKLV--SVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK-- 72
K SPLH AA G++DI LV N + C D + PL AA ++ +K L+K
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 73 --VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL 130
V P+ A G T LH E ++ L + N VN +DD G T + A
Sbjct: 68 ALVDPKDA-----EGSTCLHLAAKKGHYEVVQYL--LSNGQMDVNCQDDGGWTPMIWATE 120
Query: 131 EKQVEVFYM------DFD-RNNMDNNIFYGCGLSG 158
K V++ + D + R+N +N + SG
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG 155
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D+ ++ LHLAA KG+ ++V L+S +D G P+ A +V+++K L+
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
+ E + LH ++ +L+ + D VN +G + LH+A E +
Sbjct: 134 GSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAKCDLHAVNI---HGDSPLHIAARENR 189
Query: 134 VEVFYMDFDRNN 145
+ + R++
Sbjct: 190 YDCVVLFLSRDS 201
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 18 ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
+SPLH+AA G D++ L+ AR+ D PLH+A +G+ V+K L+ +
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 78 ALILMERGVTILHACVN-YNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ +++AC +++L +L L +N+ ++ G+T LH AV+EK V V
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLL-----QHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 137 FYM 139
+
Sbjct: 201 VEL 203
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
LD +PLHLAA G+L+IV L+ ++ A D G PLH+AAIRG++ +++ L+K
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D DG PLH+AA G++ +++ L+K A +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY---GADVNA 75
Query: 83 ER--GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
E G+T LH LE + +L++ D VN++D G T +++
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
L E G+T LH LE + +L++ D VN++D+ G T LHLA + +E+
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEI 95
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ +PLHLAA +G+L+IV L+ ++ A+D GK I+
Sbjct: 64 EVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+D +PLHLAA +G+L+IV L+ ++ A DI G+ PLH+AA G++ +++ L++
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALI 80
L A + D ++++ N A D G PLH+AA RG++ +++ L+K A+ I
Sbjct: 19 LEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH LE + +L+E D VN++D G T +++
Sbjct: 79 W---GRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D +PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 64 EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISID 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ GVT LH LE + +L++ D VN+ D G T LHLA +E+
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDIWGRTPLHLAATVGHLEI 95
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCF----ARDIDGKNPLHIAAIRGNVNVLKELVK-- 72
+ LH+AA L+ + L+ PE+ F + +G+ LHIA I NVN+++ L+
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 73 -------------VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD 119
RP + E ++ ACV ++ +RLL+E D + ++D
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFA-ACVGSEEI--VRLLIEHGAD---IRAQDS 152
Query: 120 NGSTILHLAVLE 131
G+T+LH+ +L+
Sbjct: 153 LGNTVLHILILQ 164
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
SPL LAA + + + KL+ R G+ LHIAA+ N+ L++ P+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 79 LILME----RGVTILH-ACVNYN 96
M G T LH A +N N
Sbjct: 65 FEPMTSELYEGQTALHIAVINQN 87
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 17 KASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRG---NVNVLKELV 71
+ +PLHLA +I L+ +PE+ RD G PLH+A +G +V VL +
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 72 KVRPQAALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHL 127
P IL G T LH + L + LLV + D VN+++ NG T LHL
Sbjct: 102 TT-PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHL 157
Query: 128 AV 129
AV
Sbjct: 158 AV 159
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 14 DSRKASPLHLAAAKGYLDI--VLKLVSVNPEM---CFARDIDGKNPLHIAAIRGNVNVLK 68
D R +PLHLA +G L VL P + A + +G LH+A+I G + +++
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 69 ELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
LV + G T LH V+ + + LL++ D
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 81 LMERGVTILH-ACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
L E G + LH A ++ + ++ ++ +++ D F+N +++ T LHLAV+ Q E+
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 17 KASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRG---NVNVLKELV 71
+ +PLHLA +I L+ +PE+ RD G PLH+A +G +V VL +
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 72 KVRPQAALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHL 127
P IL G T LH + L + LLV + D VN+++ NG T LHL
Sbjct: 99 TT-PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHL 154
Query: 128 AV 129
AV
Sbjct: 155 AV 156
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 14 DSRKASPLHLAAAKGYLDI--VLKLVSVNPEM---CFARDIDGKNPLHIAAIRGNVNVLK 68
D R +PLHLA +G L VL P + A + +G LH+A+I G + +++
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 69 ELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
LV + G T LH V+ + + LL++ D
Sbjct: 132 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 81 LMERGVTILH-ACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
L E G + LH A ++ + ++ ++ +++ D F+N +++ T LHLAV+ Q E+
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 57
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+D +PLHLAA +G+L+IV L+ ++ A D G+ PLH+AA G++ +++ L++
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L A + D ++++ N A D G PLH+AA RG++ +++ L+K
Sbjct: 19 LEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASD 77
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH LE + +L+E D VN++D G T +++
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + DS +PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 64 EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISID 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ GVT LH LE + +L++ D VN+ D G T LHLA +E+
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDSWGRTPLHLAATVGHLEI 95
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D SPLH+AA+ G +IV L+ ++ A + +G PLH AA K
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAA-----------SKN 117
Query: 74 RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
R + A++L+E G T +H L+ + +L+ + N +D G+T
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNT 174
Query: 124 ILHLAVLEKQVE 135
LHLA E++VE
Sbjct: 175 PLHLACDEERVE 186
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D +A+ +H AAAKG L ++ L+ +D +G PLH+A V K LV
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTEGNTPLHLACDEERVEEAKLLVS- 193
Query: 74 RPQAALILME 83
Q A I +E
Sbjct: 194 --QGASIYIE 201
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D SPLH+AA+ G +IV L+ ++ A + +G PLH AA K
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAA-----------SKN 118
Query: 74 RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
R + A++L+E G T +H L+ + +L+ + N +D G+T
Sbjct: 119 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNT 175
Query: 124 ILHLAVLEKQVE 135
LHLA E++VE
Sbjct: 176 PLHLACDEERVE 187
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D +A+ +H AAAKG L ++ L+ +D +G PLH+A V K LV
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTEGNTPLHLACDEERVEEAKLLVS- 194
Query: 74 RPQAALILME 83
Q A I +E
Sbjct: 195 --QGASIYIE 202
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 51 GKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
G LH+AA +G VLK L++ R + + G T LHA ++ + E+ R+LVE D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD-GWTPLHAAAHWGKEEACRILVENLCD 257
Query: 111 HEFVN 115
E VN
Sbjct: 258 MEAVN 262
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 30/142 (21%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLK----- 68
D+ PLH AA+ GYLDI L+S + A + +G PL IA +L+
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Query: 69 ---ELVKVRPQAALILM------------------ERGVTILHACVNYNQLESLRLLVEI 107
++ R + I++ + G T LH E L+LL++
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 108 RNDHEFVNSKDDNGSTILHLAV 129
R D VN KD +G T LH A
Sbjct: 222 RYD---VNIKDYDGWTPLHAAA 240
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 18 ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+ LH+AAAKGY +++ L+ ++ +D DG PLH AA G + LV+
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
A + G + VL+L+ ++ +A ++DG LH A I NV+++K LV+
Sbjct: 47 ACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVE 94
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
D + +PLHLAA +L+IV L+ ++ A D DG PLH+AA+ G++ +++ L+K
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+G T LH +Y+ LE + +L++ D VN+ D++GST LHLA L +E+
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGHLEI 95
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + D+ ++PLHLAA G+L+IV L+ ++ A+D GK I+
Sbjct: 64 EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D SPLH+AA+ G +IV L+ V A + +G PLH AA K
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAA-----------SKN 117
Query: 74 RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
R + A++L+E G T +H L+ + +L+ + N +D G+T
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNT 174
Query: 124 ILHLAVLEKQVE 135
LHLA E++VE
Sbjct: 175 PLHLACDEERVE 186
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D A+ +H AAAKG L +V L+ +D +G PLH+A V K LV
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLV-- 192
Query: 74 RPQAALILME 83
Q A I +E
Sbjct: 193 -TQGASIYIE 201
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D SPLH+AA+ G +IV L+ V A + +G PLH AA K
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAA-----------SKN 117
Query: 74 RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
R + A++L+E G T +H L+ + +L+ + N +D G+T
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNT 174
Query: 124 ILHLAVLEKQVE 135
LHLA E++VE
Sbjct: 175 PLHLACDEERVE 186
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D A+ +H AAAKG L +V L+ +D +G PLH+A V K LV
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLV-- 192
Query: 74 RPQAALILME 83
Q A I +E
Sbjct: 193 -TQGASIYIE 201
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D SPLHLAA G+ L+ +D + PLH+AA G+ N+++ L+K
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKH 89
Query: 74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
M + +T LH +N E + LL++ D
Sbjct: 90 GADVNAKDMLK-MTALHWATEHNHQEVVELLIKYGAD 125
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR-PQAALIL 81
L AA+ D ++++ N F D G +PLH+AA G+ + + L++ + A
Sbjct: 7 LEAARAGQDDEVRILMANG-APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
++R T LH + + +L++ D VN+KD T LH A EV
Sbjct: 66 VDR--TPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEV 115
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+PLH AA G+ + V KL+S ++ AR DG PLH+AA G+ ++K L+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLL 62
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 50 DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRN 109
DG PLH AA G+ +K+L+ + + G T LH E ++LL+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 110 DHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
D VN++ +G+T HLA E+ +
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVKL 93
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIA 58
E+L KP + D PLH + + +I L+S N + D G P HIA
Sbjct: 20 ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79
Query: 59 AIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVE 106
GN+ V+K L RP + + +GVT LH V E + L+E
Sbjct: 80 CSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 20 PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
PLH A + V +L+ P + +D DG+ PLH + + L+ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 80 --ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T H + LE ++ L + R +N + G T LHLAV +K EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 54 PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF 113
PLH A + ++EL+ +P L + G LH V++ E L+ +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 114 VNSKDDNGSTILHLAVLEKQVEVFYMDFDR 143
+ DD+G T H+A +EV +DR
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+ D A+ LHLAAA D +L+ + + +D G+ PLH A V + L+
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILI 110
Query: 72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
+ R M G T L + +L +L ++ N H VN+ DD G + LH
Sbjct: 111 RNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIA 58
E+L KP + D PLH + + +I L+S N + D G P HIA
Sbjct: 20 ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79
Query: 59 AIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVE 106
GN+ V+K L RP + + +GVT LH V E + L+E
Sbjct: 80 CSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 20 PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
PLH A + V +L+ P + +D DG+ PLH + + L+ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 80 --ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T H + LE ++ L + R +N + G T LHLAV +K EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 54 PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF 113
PLH A + ++EL+ +P L + G LH V++ E L+ +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 114 VNSKDDNGSTILHLAVLEKQVEVFYMDFDR 143
+ DD+G T H+A +EV +DR
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIA 58
E+L KP + D PLH + + +I L+S N + D G P HIA
Sbjct: 20 ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79
Query: 59 AIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVE 106
GN+ V+K L RP + + +GVT LH V E + L+E
Sbjct: 80 CSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 20 PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
PLH A + V +L+ P + +D DG+ PLH + + L+ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 80 --ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G T H + LE ++ L + R +N + G T LHLAV +K EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 54 PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF 113
PLH A + ++EL+ +P L + G LH V++ E L+ +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 114 VNSKDDNGSTILHLAVLEKQVEVFYMDFDR 143
+ DD+G T H+A +EV +DR
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
G+L+S +PLH A +G+L +V++L+ + D +G + +H+AA G+ +++
Sbjct: 72 GGDLNS---TPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAY 127
Query: 70 LVKVRPQAALILMERGVT-ILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHL 127
L+ + Q ++ + G+T ++ A + ++ RLL+ VN D + +T LH
Sbjct: 128 LI-AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDKYHKNTALHW 183
Query: 128 AVLEKQVEVF 137
AVL V
Sbjct: 184 AVLAGNTTVI 193
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D RK++PLHLAA + IV L+ ++ A+D G PLH A G+ V + L+K
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 74 RPQA-ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVN 115
A+ L + T LH + N++E LL+ D VN
Sbjct: 114 GACVNAMDLWQ--FTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L RK E + +PLH+AA + + D++ L +M A D G+ LH AA+
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAAL 289
Query: 61 RGNVNVLKELVKVRPQAALILME 83
G++ + L+ ++I ++
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQ 312
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 44 CFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMER--GVTILHACVNYNQLESL 101
C A D PLH+AA V +++ L++ A + + G+ LH +Y E
Sbjct: 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 102 RLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
LL++ VN+ D T LH A + +VEV
Sbjct: 108 ELLLK---HGACVNAMDLWQFTPLHEAASKNRVEV 139
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+PLHLAA+ G+ DIV KL+ ++ A + G PLH A G V ++LV
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D SPLH A +G +V L+ + D PLH+AA G+ +++++L++
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQY 94
Query: 74 RPQAALILMERGVTILHAC 92
+ + V + +AC
Sbjct: 95 KADINAVNEHGNVPLHYAC 113
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+PLHLAA+ G+ DIV KL+ ++ A + G PLH A G V ++LV
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
D SPLH A +G +V L+ + D PLH+AA G+ +++++L++
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQY 89
Query: 74 RPQAALILMERGVTILHAC 92
+ + V + +AC
Sbjct: 90 KADINAVNEHGNVPLHYAC 108
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D +++++ N A D G PLH+AA+ G++ +++ L+K
Sbjct: 19 LEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT-G 77
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH + LE + +L++ D VN++D G T +++
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+PLHLAA G+L+IV L+ N A G+ PLH+AA ++ +++ L+K
Sbjct: 49 TPLHLAAMLGHLEIVEVLLK-NGADVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + + +PLHLAA +L+IV L+ ++ A+D GK I+
Sbjct: 64 EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGK--NPLHIAAIRGNVNVLKELVKVRPQAALIL 81
AA G ++ V KL +V C RDI+G+ PLH AA V+V++ L ++ A +
Sbjct: 17 AAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSVVEYL--LQHGADVHA 72
Query: 82 MERGVTI-LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM- 139
++G + LH +Y E LLV+ VN D T LH A + + E+ +
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
Query: 140 -----DFDRNNMDNNI 150
D + N D N
Sbjct: 130 LQHGADPTKKNRDGNT 145
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+++ R+++PLH AA + +V L+ ++ A+D G PLH A G+ V + LV
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV 97
Query: 72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
K + + + T LH + E +LL++ D K+ +G+T L L
Sbjct: 98 KHGAVVNVADLWK-FTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDL 149
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
D +PL+LA A G+L+IV L+ N A D G PLH+AA G++ + + L+K
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + +D+ +PLHLAA G+L+I L+ ++ A+D GK I+
Sbjct: 64 EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIG 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A+D G PL++A G++ +++ L+K +
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-D 77
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH LE +L++ D VN++D G T +++
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISI 121
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 8 EQAG-ELD---SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN 63
+Q G ELD + + +PLHLA +V LV+ A D G+ H+A +
Sbjct: 33 QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRS 91
Query: 64 VNVLKELVKVRPQAALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
L+ L+ L L R G+T LH VN E+++LL+E D + V+ K
Sbjct: 92 PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR 151
Query: 121 GSTILH 126
S ++H
Sbjct: 152 -SPLIH 156
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDID-----GKNPLHIAAIRGNV 64
A D +PLH+A +G L V +LV++ + R++D + PLH+A I
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLP 59
Query: 65 NVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF-VNSKDDNGST 123
+V++ LV + + L G T H + LR L++ + +++ +G T
Sbjct: 60 SVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 124 ILHLAVLEKQVEVFYMDFDR 143
LH+AV + E + +R
Sbjct: 119 ALHVAVNTECQETVQLLLER 138
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 43 MCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL---ILMERGVTILHACVNYNQLE 99
M D DG PLHIA ++GN+ + LV + Q I T LH V
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 100 SLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
+RLLV + D +G T HLA
Sbjct: 61 VVRLLVTAGASPMAL---DRHGQTAAHLA 86
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGK--NPLHIAAIRGNVNVLKELVKVRPQAALIL 81
AA G ++ V KL +V C RDI+G+ PLH AA V+V++ L ++ A +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSVVEYL--LQHGADVHA 70
Query: 82 MERGVTI-LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM- 139
++G + LH +Y E LLV+ VN D T LH A + + E+ +
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 140 -----DFDRNNMDNNI 150
D + N D N
Sbjct: 128 LQHGADPTKKNRDGNT 143
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGK--NPLHIAAIRGNVNVLKELVKVRPQAALIL 81
AA G ++ V KL +V C RDI+G+ PLH AA V+V++ L ++ A +
Sbjct: 19 AAKAGDVETVKKLCTVQSVNC--RDIEGRQSTPLHFAAGYNRVSVVEYL--LQHGADVHA 74
Query: 82 MERGVTI-LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM- 139
++G + LH +Y E LLV+ VN D T LH A + + E+ +
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
Query: 140 -----DFDRNNMDNNI 150
D + N D N
Sbjct: 132 LQHGADPTKKNRDGNT 147
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+++ R+++PLH AA + +V L+ ++ A+D G PLH A G+ V + LV
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV 99
Query: 72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
K + + + T LH + E +LL++ D K+ +G+T L L
Sbjct: 100 KHGAVVNVADLWK-FTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDL 151
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+PLHLAA +L+IV L+ N A D G+ PLH+ A+ G++ +++ L+K
Sbjct: 49 TPLHLAAMNDHLEIVEVLLK-NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
L AA+ D ++++ N A D G PLH+AA+ ++ +++ L+K I
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-D 77
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
G T LH Y LE + +L++ D VN++D G T +++
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
E+L + +D+ +PLHL A G+L+IV L+ ++ A+D GK I+
Sbjct: 64 EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 122
Query: 61 RGNVNVLKELVKV 73
GN ++ + L K+
Sbjct: 123 NGNEDLAEILQKL 135
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+ D + LHLAA D +L+ + + +D G+ PLH A V + L+
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILI 111
Query: 72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
+ R M G T L + +L +L ++ N H VN+ DD G + LH
Sbjct: 112 RNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 164
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+ D + LHLAA D +L+ + + ++ G+ PLH A V + L+
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILI 110
Query: 72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
+ R M G T L + +L +L ++ N H VN+ DD G + LH
Sbjct: 111 RNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+ D + LHLAA D +L+ + + ++ G+ PLH A V + L+
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILI 78
Query: 72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
+ R M G T L + +L +L ++ N H VN+ DD G + LH
Sbjct: 79 RNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 7 PEQAGELDSRKASP----------LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLH 56
PE A L R A+P +H AA G+LD + L+ ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 57 IAAIRGNVNVLKELVK 72
+AA G++ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 7 PEQAGELDSRKASP----------LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLH 56
PE A L R A+P +H AA G+LD + L+ ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 57 IAAIRGNVNVLKELVK 72
+AA G++ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 7 PEQAGELDSRKASP----------LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLH 56
PE A L R A+P +H AA G+LD + L+ ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 57 IAAIRGNVNVLKELVK 72
+AA G++ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
+ D + LHLAA D +L+ + + ++ G+ PLH A V + L+
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNM-GRTPLHAAVSADAQGVFQILL 75
Query: 72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
+ R M G T L + +L +L ++ N H VN+ DD G + LH
Sbjct: 76 RNRATDLDARMHDGTTPL---ILAARLALEGMLEDLINSHADVNAVDDLGKSALH 127
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+ LH A G+ +IV LV + A D DG PLH AA NV V K LV+
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ G+T LH V E ++ LV+ + VN+ D +G T LH A V+V
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQV 118
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
+ LH A G+ +IV LV + A D DG PLH AA NV V K LV+
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE 124
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 53 NPLHIA-----AIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEI 107
NPL +A ++ G ++++ ++ +L + G+T LH V E ++ LV+
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 108 RNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
+ VN+ D +G T LH A V+V
Sbjct: 93 GVN---VNAADSDGWTPLHCAASCNNVQV 118
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 24 AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME 83
AAA+G L+ + L+ N + G+ L + + GN + + L+ +R +
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKL-GNPEIARRLL-LRGANPDLKDR 68
Query: 84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G ++H QL++L+ L+E + D VN +D+ G+ LHLA E + V
Sbjct: 69 TGFAVIHDAARAGQLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRV 118
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 7 PEQAGELDSRKASP----------LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLH 56
PE A L R A+P +H AA G LD + L+ ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI-EDNEGNLPLH 108
Query: 57 IAAIRGNVNVLKELVK 72
+AA G++ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 7 PEQAGELDSRKASP----------LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLH 56
PE A L R A+P +H AA G+LD + L+ ++ D +G PLH
Sbjct: 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNI-EDNEGNLPLH 108
Query: 57 IAAIRGNVNVLKELVK 72
+AA G++ V++ LVK
Sbjct: 109 LAAKEGHLRVVEFLVK 124
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL---EKQVEVF 137
+ E G T LH V + L L+ HE+++ ++D G T LHLA + VE
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 138 Y 138
Y
Sbjct: 65 Y 65
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 21 LHLAA---AKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
LHLA + +LD +L + + + D+ G+ LH+AAI G + +++L A
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYAA--GA 69
Query: 78 ALILMERGV-TILHACVNYNQLESLRLLVEIRNDH 111
+++ ERG T LH +L++ R H
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL---EKQVEVF 137
+ E G T LH V + L L+ HE+++ ++D G T LHLA + VE
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 138 Y 138
Y
Sbjct: 65 Y 65
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 21 LHLAA---AKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
LHLA + +LD +L + + + D+ G+ LH+AAI G + +++L A
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKLYAA--GA 69
Query: 78 ALILMERGV-TILHACVNYNQLESLRLLVEIRNDH 111
+++ ERG T LH +L++ R H
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
L AA+ D ++++ N A+D DG PLH+AA G++ +++ L+K
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
+PLHLAA +G+L+IV L+ ++ A+D GK I+ GN ++ + L K
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 85 GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G +L A Q + +R+L+ D VN+KD +G T LHLA E +E+
Sbjct: 3 GKKLLEAA-RAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEI 50
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 45 FARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLL 104
FA + D +N + AI+G VNV+K + + +IL A V NQL+ L+
Sbjct: 93 FASE-DPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSA-----AAVTINQLDGTGLV 146
Query: 105 VEIRN--DHEFVNS 116
V+ +N D EF+ S
Sbjct: 147 VDEKNWTDIEFLTS 160
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
L AA+ D ++++ N A+D +G PLH+AA G++ V+K L++
Sbjct: 11 LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN 63
D ++PLHLAA G+L++V L+ ++ A+D GK I+ GN
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKTAFDISIDNGN 84
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 114 VNSKDDNGSTILHLAVLEKQVEVFYM 139
V +KD NGST LHLA +EV +
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKL 57
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
L AA+ D ++++ N A+D +G PLH+AA G++ V+K L++
Sbjct: 29 LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN 63
D ++PLHLAA G+L++V L+ ++ A+D GK I+ GN
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDISIDNGN 102
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 75 PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV 134
P+ + + + G +L A Q + +R+L+ D V +KD NGST LHLA +
Sbjct: 15 PRGSHMGSDLGKKLLEAA-RAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHL 70
Query: 135 EVFYM 139
EV +
Sbjct: 71 EVVKL 75
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
D+ SP+H AA G+LD + LV ++ A D G P+H+A G+ +V+ L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVVSFLA 129
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEM-CFARDIDGKNPLHIAAIRGNVNVL 67
LDS + P+HLA +G+ +V L PE RD G PL +A RG N++
Sbjct: 105 LDSTGSLPIHLAIREGHSSVVSFLA---PESDLHHRDASGLTPLELARQRGAQNLM 157
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 24 AAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI 80
AAA+G + V +L+ V+P+ A + GK L + G+ V EL+K + + +
Sbjct: 17 AAARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVMMF-GSPAVALELLK-QGASPNV 71
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G + +H L++L++LVE D VN+ D GS +HLA+ E V
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGAD---VNALDSTGSLPIHLAIREGHSSV 124
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
D+ SP+H AA G+LD + LV ++ A D G P+H+A G+ +V+ L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVVSFLA 127
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEM-CFARDIDGKNPLHIAAIRGNVNVL 67
LDS + P+HLA +G+ +V L PE RD G PL +A RG N++
Sbjct: 103 LDSTGSLPIHLAIREGHSSVVSFLA---PESDLHHRDASGLTPLELARQRGAQNLM 155
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 24 AAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI 80
AAA+G + V +L+ V+P+ A + GK L + G+ V EL+K + + +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVMMF-GSPAVALELLK-QGASPNV 69
Query: 81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
G + +H L++L++LVE D VN+ D GS +HLA+ E V
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGAD---VNALDSTGSLPIHLAIREGHSSV 122
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
D+ SP+H AA G+LD + LV ++ D G P+H+A G+ V+ L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLA 121
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKEL 70
D+ SP+H AA G+LD + LV ++ D G P+H+A G+ V+ L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFL 126
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 15/154 (9%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLV----SVNPEMCFARDIDGKNPLH 56
+IL + Q + + +PL A G D V L+ SV PE D +P+H
Sbjct: 53 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES------DLASPIH 106
Query: 57 IAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNS 116
AA RG+V + L+ + G + AC N Q ++ L+E D VN
Sbjct: 107 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQRACVKKLLESGAD---VNQ 162
Query: 117 KDDNGSTILHLA-VLEKQVEVFYMDFDRNNMDNN 149
S + +A +++ MDF + N
Sbjct: 163 GKGQDSPLHAVARTASEELACLLMDFGADTQAKN 196
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDI---DGKNPLHIAAIRGNVNVLKELVKVRP 75
SP+H AA G+ + L+S +A +I D +PLH A + G+++ +K L+K
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQG----WAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 76 QAALILMERGVTILHACVN 94
Q + + + +ACV+
Sbjct: 61 QVNGVTADWHTPLFNACVS 79
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
A D+ +PLH A A + + L+ AR DG PL +AA ++++
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 70 LVKVRPQ--AALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
L+ AA G T LH N E++ +L+ H +++DD T L L
Sbjct: 137 LITADADINAA---DNSGKTALHWAAAVNNTEAVNILLM---HHANRDAQDDKDETPLFL 190
Query: 128 AVLEKQVEV 136
A E E
Sbjct: 191 AAREGSYEA 199
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 51 GKNPLHIAAIRG---------------NVNVLKELVKVRPQAALILMERGVTILHACVNY 95
G PL IAA+RG V+ +L+ + + + G T LH +
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 96 NQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
+ ++ + L++ D NS+D+ G T LH AV + VF +
Sbjct: 62 ARADAAKRLLDAGAD---ANSQDNTGRTPLHAAVAADAMGVFQI 102
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
EIL+ Q E+D+ +PL++A ++I L+ ++ I +P A
Sbjct: 23 EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI-SDSPYLYAGA 81
Query: 61 RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
+G +L ++K G L +++++LL+E + E ++ ++D
Sbjct: 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE--DGREDIDFQNDF 139
Query: 121 GSTILHLAVLEKQVEVFYMDF 141
G T L AV ++ Y D
Sbjct: 140 GYTALIEAVGLREGNQLYQDI 160
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDI---DGKNPLHIAAIRGNVNVLKELVKVRP 75
SP+H AA G+ + L+S +A +I D +PLH A + G+++ +K L+K
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQG----WAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 76 QAALILMERGVTILHACVN 94
Q + + + +ACV+
Sbjct: 117 QVNGVTADWHTPLFNACVS 135
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 13/153 (8%)
Query: 1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLV----SVNPEMCFARDIDGKNPLH 56
+IL + Q + + +PL A G D V L+ SV PE A +P+H
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA------SPIH 162
Query: 57 IAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNS 116
AA RG+V + L+ + G + AC N Q ++ L+E D
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQRACVKKLLESGADVNQGKG 221
Query: 117 KDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNN 149
+D ++ A +++ MDF + N
Sbjct: 222 QDSPLHAVVRTA--SEELACLLMDFGADTQAKN 252
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 51 GKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
G+ LHIA+I+G++ ++ L++ + G T LH N+ L+ + LL++ +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHK-- 66
Query: 111 HEFVNSKDDNGSTILHLAVLEKQVEV 136
VN+ + LH A V++
Sbjct: 67 -ALVNTTGYQNDSPLHDAAKNGHVDI 91
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
D +PLH A G+L +V +L+ + + +PLH AA G+V+++K L+
Sbjct: 40 DHAGWTPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 10 AGELDSRK---ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNV 66
A DS K + LH AA IV LV +D DGK P+ +AA G + V
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEV 328
Query: 67 LKELVK 72
+ L++
Sbjct: 329 VXYLIQ 334
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 3 LRRKPEQAGE-LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPL-H--IA 58
LRRK ++ E L A+ L AA KG+++++ L+ A D G+N L H ++
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192
Query: 59 AIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
+ +V + L+ + ERG T L V L ++ L+E +H +N D
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE--QEHIEINDTD 250
Query: 119 DNGSTILHLAV 129
+G T L LAV
Sbjct: 251 SDGKTALLLAV 261
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 3 LRRKPEQAGE-LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPL-H--IA 58
LRRK ++ E L A+ L AA KG+++++ L+ A D G+N L H ++
Sbjct: 153 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 212
Query: 59 AIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
+ +V + L+ + ERG T L V L ++ L+E +H +N D
Sbjct: 213 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE--QEHIEINDTD 270
Query: 119 DNGSTILHLAV 129
+G T L LAV
Sbjct: 271 SDGKTALLLAV 281
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNV--LKE 69
+ DS PLH A G+ + + ++ ARD +G++PL IA N ++ L
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLR 321
Query: 70 LVKVR 74
L K+R
Sbjct: 322 LAKMR 326
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNV--LKE 69
+ DS PLH A G+ + + ++ ARD +G++PL IA N ++ L
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLR 321
Query: 70 LVKVR 74
L K+R
Sbjct: 322 LAKMR 326
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNV--LKE 69
+ DS PLH A G+ + + ++ ARD +G++PL IA N ++ L
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLR 321
Query: 70 LVKVR 74
L K+R
Sbjct: 322 LAKMR 326
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 46 ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLV 105
A ID NPLH AA RGN++ L+E + R L + G T L+ + + + L
Sbjct: 70 AESID--NPLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEXLF 126
Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
N +N ++ G T LH A + ++ +
Sbjct: 127 TQPNIE--LNQQNKLGDTALHAAAWKGYADIVQL 158
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
M G+T LH Y + E + LVE+ D E +D+ G T L LA
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEV---EDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
M G+T LH Y + E + LVE+ D E +D+ G T L LA
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEV---EDERGLTALELA 151
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN 63
L + S L LA +KGY DIV L+ ++ D +G PL + A+ GN
Sbjct: 81 LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPL-LYAVHGN 129
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN 63
L + S L LA +KGY DIV L+ ++ D +G PL + A+ GN
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPL-LYAVHGN 111
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN 63
L + S L LA +KGY DIV L+ ++ D +G PL + A+ GN
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPL-LYAVHGN 113
>pdb|2WYO|A Chain A, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|B Chain B, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|C Chain C, Trypanosoma Brucei Glutathione Synthetase
pdb|2WYO|D Chain D, Trypanosoma Brucei Glutathione Synthetase
Length = 562
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 30 LDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTIL 89
L + LKL S++PE +DG P+ +A R + V ++ AA + +ER I
Sbjct: 300 LHLSLKLHSISPEQPPLAVVDGHYPIAVAYFR-STYVPEDFPTDATWAARLSLERSSAIK 358
Query: 90 HACVNYNQLESLRL 103
+ Y+ L +L
Sbjct: 359 CPSIPYHLLTFKKL 372
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 17/77 (22%)
Query: 66 VLKELVKVRPQAALILME--------------RGVTILHACVNYNQLESLRLLVEIRNDH 111
VL VKV QA+L L++ G T LH YNQ + L+LL++ R
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR--- 249
Query: 112 EFVNSKDDNGSTILHLA 128
V + ++ G T L +A
Sbjct: 250 ALVGTVNEAGETALDIA 266
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 17/77 (22%)
Query: 66 VLKELVKVRPQAALILME--------------RGVTILHACVNYNQLESLRLLVEIRNDH 111
VL VKV QA+L L++ G T LH YNQ + L+LL++ R
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR--- 230
Query: 112 EFVNSKDDNGSTILHLA 128
V + ++ G T L +A
Sbjct: 231 ALVGTVNEAGETALDIA 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,669,808
Number of Sequences: 62578
Number of extensions: 176495
Number of successful extensions: 867
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 295
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)