BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035644
         (285 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
 pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
          Length = 959

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 17  VFYLSFNSSEAQMVPAVFVFGDSLVDVGNNNYLPISIA 54
           V Y SFN + A MVP      ++L   G   Y+P   A
Sbjct: 640 VIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAA 677


>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Poly- Alanine
          Length = 908

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 17  VFYLSFNSSEAQMVPAVFVFGDSLVDVGNNNYLPISIA 54
           V Y SFN + A MVP      ++L   G   Y+P   A
Sbjct: 596 VIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAA 633


>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Cleaved Poly-Alanine
 pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Substance P
          Length = 908

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 17  VFYLSFNSSEAQMVPAVFVFGDSLVDVGNNNYLPISIA 54
           V Y SFN + A MVP      ++L   G   Y+P   A
Sbjct: 596 VIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAA 633


>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
 pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Alanine
 pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Bestatin
          Length = 909

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 17  VFYLSFNSSEAQMVPAVFVFGDSLVDVGNNNYLPISIA 54
           V Y SFN + A MVP      ++L   G   Y+P   A
Sbjct: 597 VIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAA 634


>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer
 pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer
 pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
 pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
           Motor Domain Dimer-Tail Complex
          Length = 365

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 172 MYNEALKSMLQELKSELNGMTYTYFDTYS----VMQSIIQNPTPQGF 214
           +YNEA KS++ ++ +  NG  + Y  T S     M+ +I +   QG 
Sbjct: 68  VYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGI 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,253,949
Number of Sequences: 62578
Number of extensions: 335507
Number of successful extensions: 632
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 10
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)