BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035645
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
 pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
 pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
 pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
          Length = 294

 Score = 27.3 bits (59), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 155 TLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208
           +L T C      +   ++L +   +GL   + C D  +DGL +C +  +AE IE
Sbjct: 22  SLATYCESSDADIFLLSFLNQFPTLGLNFANACSDTFSDGLLHCTQ--IAEDIE 73


>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
 pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
           Transaminase From E. Coli
          Length = 406

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 5   GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 40
           G    VRG  LL+  +LNA Y   AKQ+  +  K G
Sbjct: 327 GLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAG 362


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,639,420
Number of Sequences: 62578
Number of extensions: 272461
Number of successful extensions: 462
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 2
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)