BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035645
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94JX6|PP391_ARATH Pentatricopeptide repeat-containing protein At5g18390,
mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2
SV=2
Length = 459
Score = 360 bits (923), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 168/217 (77%), Positives = 187/217 (86%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +GFNPP RGRDLL++GLLNAGYLESAK+MV+KM K G PD++TFN LIE I KSGE
Sbjct: 243 MSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGE 302
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VEFC+EMYY+ CKLG C D+ TYK LIPAVSK G IDEAFRLL+N VEDGH PFPSLYAP
Sbjct: 303 VEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAP 362
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
IIKG R G FDDAF FFS++K+K HPPNRPVYT LITMCGRGG+FV+AANYL+EMTEMG
Sbjct: 363 IIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMG 422
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRSV 217
L PISRCFD+VTDGLKN GKHDLA +IEQLEV LR V
Sbjct: 423 LVPISRCFDMVTDGLKNGGKHDLAMRIEQLEVQLRGV 459
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 1/200 (0%)
Query: 2 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV 61
S+ + P + L + L + ES +++ +M D ET +IE K+G V
Sbjct: 103 SNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHV 162
Query: 62 EFCVEMYYSVCK-LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ VE++ V K LG V Y L+ A+ M A+ L+ ++ G P YA
Sbjct: 163 DQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAI 222
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G G+ +A F E+ +G P LI G A + +MT+ G
Sbjct: 223 LVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGG 282
Query: 181 LTPISRCFDLVTDGLKNCGK 200
P + F+++ + + G+
Sbjct: 283 FVPDIQTFNILIEAISKSGE 302
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 2/184 (1%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
+ L+ GL + +E A Q++++MI +G PD T+NSL+ C+ G+++ ++ ++
Sbjct: 509 NTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS 568
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G D+ TY LI + KAG ++ A +LL ++ G N P Y P+I+G FR+ + +
Sbjct: 569 NGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTE 628
Query: 134 AFCFFSEIKIKGH-PPNRPVYTTLIT-MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLV 191
A F E+ + PP+ Y + +C GG EA ++L+E+ E G P ++
Sbjct: 629 AINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYML 688
Query: 192 TDGL 195
+GL
Sbjct: 689 AEGL 692
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 2/214 (0%)
Query: 1 MSDK-GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG 59
MS++ GF P + LV GL AG+++ A ++++ M+++G DPD+ T+NS+I +CK G
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLG 344
Query: 60 EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
EV+ VE+ + + TY LI + K ++EA L L G P +
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 404
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I+G A F E++ KG P+ Y LI G+ EA N L +M
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEKI-EQLEV 212
G ++ + DG K AE+I +++EV
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEV 498
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 97/207 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
++ KG P V + L+QGL A ++ +M +G +PD T+N LI+++C G+
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + M + G V TY LI KA EA + + G + Y
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + +DA ++ ++G P++ Y +L+T RGG +AA+ + MT G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
P + + GL G+ ++A K+
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKL 597
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 1/211 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G++P V + ++ GL G ++ A +++++MI + P+ T+N+LI T+CK +
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VE E+ + G DV T+ LI + A L + G P Y
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I +G+ D+A ++++ G + Y TLI + + EA EM G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500
Query: 181 LTPISRCFDLVTDGL-KNCGKHDLAEKIEQL 210
++ S ++ + DGL K+ D A+ ++Q+
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 6/204 (2%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQ-GSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
+++V G G +E A + +M Q G PD TFN+L+ +CK+G V+ +E+ +
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
+ G DV TY +I + K G + EA +L ++ +P Y +I + Q +
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLIT-MC-GRGGRFVEAANYLMEMTEMGLTPISRCFDL 190
+A + KG P+ + +LI +C R R A EM G P +++
Sbjct: 383 EATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV--AMELFEEMRSKGCEPDEFTYNM 440
Query: 191 VTDGLKNCGKHDLA-EKIEQLEVS 213
+ D L + GK D A ++Q+E+S
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELS 464
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 2/196 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P ++L+ L + G L+ A M+ +M G + T+N+LI+ CK+ +
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E++ + G + TY LI + K+ +++A +L+ ++ +G P Y
Sbjct: 486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM- 179
++ R G A + G P+ Y TLI+ + GR VE A+ L+ +M
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR-VEVASKLLRSIQMK 604
Query: 180 GLTPISRCFDLVTDGL 195
G+ ++ V GL
Sbjct: 605 GINLTPHAYNPVIQGL 620
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P + ++QG + G L+ A ++ +M++ G + N ++ CK G
Sbjct: 215 MPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGR 274
Query: 61 VEFCVEMYYSVCKL-GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
VE + + G D T+ L+ + KAG + A ++ ++++G++P Y
Sbjct: 275 VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYN 334
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I G + G+ +A ++ + PN Y TLI+ + + EA +T
Sbjct: 335 SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLA 204
G+ P F+ + GL H +A
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVA 419
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 3/208 (1%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G P + ++ L++ L+ + KM G PD+ TFN LI+ +C++ ++
Sbjct: 149 GLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPA 208
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+ M + G D T+ ++ + G +D A R+ +VE G + I+ G
Sbjct: 209 ILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268
Query: 125 AFRRGQFDDAFCFFSEIKIK-GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ G+ +DA F E+ + G P++ + TL+ + G A + M + G P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 184 ISRCFDLVTDGLKNCGKHDLAEKIEQLE 211
++ V GL C ++ E +E L+
Sbjct: 329 DVYTYNSVISGL--CKLGEVKEAVEVLD 354
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 97.1 bits (240), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 1/214 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MSD+ F+P L+ GL +G L AKQ+ M+ G P+ +N LI K+GE
Sbjct: 882 MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++ + K G D+ TY +L+ + G +DE L E G NP Y
Sbjct: 942 ADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNL 1001
Query: 121 IIKGAFRRGQFDDAFCFFSEIKI-KGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
II G + + ++A F+E+K +G P+ Y +LI G G EA E+
Sbjct: 1002 IINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRA 1061
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
GL P F+ + G GK + A + Q V+
Sbjct: 1062 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVT 1095
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 1/201 (0%)
Query: 3 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVE 62
D G P + +LL+ GLL A +E A+ + ++ G PD+ T+N L++ KSG+++
Sbjct: 778 DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKID 837
Query: 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHNPFPSLYAPI 121
E+Y + A+ T+ I+I + KAG +D+A L ++L+ D +P Y P+
Sbjct: 838 ELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPL 897
Query: 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181
I G + G+ +A F + G PN +Y LI G+ G A M + G+
Sbjct: 898 IDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGV 957
Query: 182 TPISRCFDLVTDGLKNCGKHD 202
P + + ++ D L G+ D
Sbjct: 958 RPDLKTYSVLVDCLCMVGRVD 978
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+G P V +L+ L A L+ AK++ KM PD T+ +L++ + +
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD 343
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + + K G DV T+ IL+ A+ KAG EAF L + + G P Y
Sbjct: 344 LDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G R + DDA F ++ G P Y I G+ G V A +M G
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463
Query: 181 LTP 183
+ P
Sbjct: 464 IAP 466
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 93/207 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P + + +G SA + KM +G P++ N+ + ++ K+G
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGR 483
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+++Y + +G D TY +++ SK G IDEA +LL ++E+G P +
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNS 543
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I ++ + D+A+ F +K P Y TL+ G+ G+ EA M + G
Sbjct: 544 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
P + F+ + D L + LA K+
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKM 630
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 2/212 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + GF + L+ LL + + A ++ +MI +G P L+T++SL+ + K +
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRD 238
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + + LG +V T+ I I + +AG I+EA+ +L + ++G P Y
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTV 298
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + D A F ++K H P+R Y TL+ + EM + G
Sbjct: 299 LIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212
P F ++ D L C + E + L+V
Sbjct: 359 HVPDVVTFTILVDAL--CKAGNFGEAFDTLDV 388
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P + + + L AG AKQ+ + G PD T+N +++ K GE
Sbjct: 459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +++ + + G DV LI + KA +DEA+++ + E P Y
Sbjct: 519 IDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNT 578
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G + G+ +A F + KG PPN + TL + A L +M +MG
Sbjct: 579 LLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMG 638
Query: 181 LTPISRCFDLVTDGLKNCGK 200
P ++ + GL G+
Sbjct: 639 CVPDVFTYNTIIFGLVKNGQ 658
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 2/211 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+G P + + L+ GLL L+ A ++ M G P T+ I+ KSG+
Sbjct: 389 MRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGD 448
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + + G ++ + +++KAG EA ++ + L + G P Y
Sbjct: 449 SVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNM 508
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++K + G+ D+A SE+ G P+ V +LI + R EA M M EM
Sbjct: 509 MMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 568
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211
L P ++ + GL GK + E IE E
Sbjct: 569 LKPTVVTYNTLLAGLGKNGK--IQEAIELFE 597
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 89/201 (44%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
+GF P ++ L+ GL ++S ++ +M G P++ TF I + ++G++
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 276
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
E+ + G DV TY +LI A+ A +D A + + H P Y ++
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
D F+SE++ GH P+ +T L+ + G F EA + L M + G+ P
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396
Query: 184 ISRCFDLVTDGLKNCGKHDLA 204
++ + GL + D A
Sbjct: 397 NLHTYNTLICGLLRVHRLDDA 417
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P V + ++ L AG + A +++ +M +G PD+ T+ LI+ +C + +
Sbjct: 249 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARK 308
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ E++ + D TY L+ S +D + + +DGH P +
Sbjct: 309 LDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTI 368
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ + G F +AF ++ +G PN Y TLI R R +A M +G
Sbjct: 369 LVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428
Query: 181 LTPISRCFDLVTD 193
+ P + + + D
Sbjct: 429 VKPTAYTYIVFID 441
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 19/201 (9%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P V + L+ L A ++ A +M +M + P + T+N+L+ + K+G+
Sbjct: 529 MMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGK 588
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +E++ + + G + T+ L + K + A ++L +++ G P Y
Sbjct: 589 IQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 648
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + GQ +A CFF ++K + VY +T+C V+A
Sbjct: 649 IIFGLVKNGQVKEAMCFFHQMK-------KLVYPDFVTLCTLLPGVVKA----------- 690
Query: 181 LTPISRCFDLVTDGLKNCGKH 201
+ I + ++T+ L NC
Sbjct: 691 -SLIEDAYKIITNFLYNCADQ 710
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 36/192 (18%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D G P ++L+ G AG ++A + +M+K+G PDL+T++ L++ +C G
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSK---------------------------- 92
V+ + + + + G DV Y ++I + K
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 93 --------AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144
AGM++EA ++ + + G P + +I+G G+ + A+ + +
Sbjct: 1037 SLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTG 1096
Query: 145 GHPPNRPVYTTL 156
G PN Y L
Sbjct: 1097 GFSPNTGTYEQL 1108
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 83/194 (42%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
+ +++ L G LE + + M K+ D T+ ++ +++ G ++ + +
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G + +Y LI + K+ EA + ++ +G P Y+ ++ G +R D
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTD 193
E++ G PN +T I + GR G+ EA L M + G P + ++ D
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301
Query: 194 GLKNCGKHDLAEKI 207
L K D A+++
Sbjct: 302 ALCTARKLDCAKEV 315
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 1/194 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+ P V + L+ GL N G + A M +KM+ G P+L T+N+LI CK+
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDM 381
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ ++M+ SV G+ Y +LI A K G ID+ F L + +G P Y
Sbjct: 382 LKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G R G + A F ++ KG P + + C R G +AA L EM++MG
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYC-RKGESRKAAMLLKEMSKMG 500
Query: 181 LTPISRCFDLVTDG 194
L P +++V G
Sbjct: 501 LKPRHLTYNIVMKG 514
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 1/194 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P + ++L+ G L + ++ +M+ Q P++ ++NSLI +C G+
Sbjct: 287 MVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGK 346
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + M + G ++ TY LI K M+ EA + ++ G P +Y
Sbjct: 347 ISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNM 406
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + G+ DD F E++ +G P+ Y LI R G A ++T G
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG 466
Query: 181 LTPISRCFDLVTDG 194
L P F ++ +G
Sbjct: 467 L-PDLVTFHILMEG 479
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P V + L+ GL G +E+AK++ +++ +G PDL TF+ L+E C+ GE
Sbjct: 427 MEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGE 485
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP-SLYA 119
+ + K+G TY I++ K G + A + + ++ + Y
Sbjct: 486 SRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYN 545
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVY 153
+++G ++G+ +DA +E+ KG PNR Y
Sbjct: 546 VLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 3/206 (1%)
Query: 5 GFNPPVRGRDLLVQG---LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV 61
G +P V + L+ G L G + A ++ +M++ P+L TFN LI+ K +
Sbjct: 253 GCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNL 312
Query: 62 EFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI 121
++++ + +V +Y LI + G I EA + +V G P Y +
Sbjct: 313 PGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNAL 372
Query: 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181
I G + +A F +K +G P +Y LI + G+ + EM G+
Sbjct: 373 INGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGI 432
Query: 182 TPISRCFDLVTDGLKNCGKHDLAEKI 207
P ++ + GL G + A+K+
Sbjct: 433 VPDVGTYNCLIAGLCRNGNIEAAKKL 458
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 5/196 (2%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ LL + + +MI++ P++ TFN +I +CK+G++ ++ + G
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFR---LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
+V +Y LI K G + ++ +L +VE+ +P + + +I G ++
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP 313
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
+ F E+ + PN Y +LI GG+ EA + +M G+ P ++ +
Sbjct: 314 GSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Query: 193 DGLKNCGKHDLAEKIE 208
+G C L E ++
Sbjct: 374 NGF--CKNDMLKEALD 387
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 7/216 (3%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK--- 57
M + P V ++++ L G + A+ ++ M G P++ ++N+LI+ CK
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG 273
Query: 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL 117
+G++ + + + +++T+ ILI K + + ++ +++ P
Sbjct: 274 NGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333
Query: 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177
Y +I G G+ +A ++ G PN Y LI + EA + +
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393
Query: 178 EMGLTPISRCFDLVTDGLKNCGKHD----LAEKIEQ 209
G P +R ++++ D GK D L E++E+
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
+ L+ L G ++ A+++VN+M+ QGS D T+NSLI+ +C++GEV+ ++ + +
Sbjct: 533 NTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G + ILI + ++GM++EA +V G P + +I G R G+ +D
Sbjct: 593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIED 652
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTD 193
F +++ +G PP+ + TL++ +GG +A L E E G P R + ++
Sbjct: 653 GLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQ 712
Query: 194 GL 195
+
Sbjct: 713 SI 714
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS G P G + L+ + A ++ +M ++G PD+ TFNSLI +C+ E
Sbjct: 450 MSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE 509
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + + G A+ TY LI A + G I EA +L++ +V G Y
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG R G+ D A F ++ GH P+ LI R G EA + EM G
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Query: 181 LTPISRCFDLVTDGLKNCGK 200
TP F+ + +GL G+
Sbjct: 630 STPDIVTFNSLINGLCRAGR 649
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 3/216 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P V +LV G G ++ A ++N+M G P+ FN LI CK
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ VE++ + + G DV T+ LI + + I A LL +++ +G Y
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I RRG+ +A +E+ +G P + Y +LI R G +A + +M G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIE-QLEVSLR 215
P + +++ +GL C + E +E Q E+ LR
Sbjct: 595 HAPSNISCNILINGL--CRSGMVEEAVEFQKEMVLR 628
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P V + L+ GL ++ A ++ MI +G + T+N+LI + GE
Sbjct: 485 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 544
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ ++ + GS D TY LI + +AG +D+A L ++ DGH P
Sbjct: 545 IKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNI 604
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G R G ++A F E+ ++G P+ + +LI R GR + ++ G
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 181 LTPISRCFDLVTDGL 195
+ P + F+ + L
Sbjct: 665 IPPDTVTFNTLMSWL 679
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 1/201 (0%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GSDPDLETFNSLIETICKSGEVEFCVE 66
P + + L+ G + G L+ AK +++ M+ G PD+ T+NSLI K G V +E
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALE 410
Query: 67 MYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126
+ + + G +V +Y IL+ K G IDEA+ +L+ + DG P + +I
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470
Query: 127 RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186
+ + +A F E+ KG P+ + +LI+ A L +M G+ +
Sbjct: 471 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530
Query: 187 CFDLVTDGLKNCGKHDLAEKI 207
++ + + G+ A K+
Sbjct: 531 TYNTLINAFLRRGEIKEARKL 551
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 93/240 (38%), Gaps = 34/240 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ G P L+ L + A Q++ +M G PD ETFN +I +CK
Sbjct: 243 MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 302
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEA----FR-----------LLHN 105
+ +M + G D TY L+ + K G +D A +R L+H
Sbjct: 303 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHG 362
Query: 106 LVEDGH-----------------NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148
V G P Y +I G ++ G A +++ KG P
Sbjct: 363 FVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP 422
Query: 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208
N YT L+ + G+ EA N L EM+ GL P + F+ + C +H + E +E
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF--CKEHRIPEAVE 480
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 70/166 (42%)
Query: 42 DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101
+P +++N ++E + + ++Y + + T+ +++ A ID A
Sbjct: 179 EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALS 238
Query: 102 LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG 161
LL ++ + G P +Y +I + + ++A E+ + G P+ + +I
Sbjct: 239 LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298
Query: 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ R EAA + M G P + + +GL G+ D A+ +
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P + + L+ GL AG +E M K+ +G PD TFN+L+ +CK G
Sbjct: 625 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGF 684
Query: 61 VEFCVEMYYSVCKL-------GSCADVSTYKILIPAVSKAGMIDE 98
V Y C L G + T+ IL+ ++ +D
Sbjct: 685 V-------YDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 4/198 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G + L+QGL AG + A+++ KM+ G PD+ T++ L++ +CK G+
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + ++ + K D+ TY I+I + KAG +++ + L +L G P +Y
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 540
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G R+G ++A F E+K G PN Y TLI R G +A + EM G
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600
Query: 181 L----TPISRCFDLVTDG 194
+ IS +++ DG
Sbjct: 601 FVGDASTISMVINMLHDG 618
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 1/205 (0%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P V + L++G A +E ++ +M ++G + T+N+LI+ + ++G+ + ++
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ + G D+ TY IL+ + K G +++A + L + P Y +I+G +
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
G+ +D + F + +KG PN +YTT+I+ R G EA EM E G P S
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572
Query: 188 FD-LVTDGLKNCGKHDLAEKIEQLE 211
++ L+ L++ K AE I+++
Sbjct: 573 YNTLIRARLRDGDKAASAELIKEMR 597
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ NP V L+ + G L A+++ ++MIK+ DPD+ T++SLI C
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ M+ + +V TY LI KA ++E L + + G Y
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+G F+ G D A F ++ G PP+ Y+ L+ + G+ +A + +
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 495
Query: 181 LTPISRCFDLVTDGLKNCGK 200
+ P ++++ +G+ GK
Sbjct: 496 MEPDIYTYNIMIEGMCKAGK 515
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P V + L++ L N G A ++++ MI++ +P++ TF++LI+ K G+
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++Y + K D+ TY LI +DEA + ++ P Y
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + + ++ F E+ +G N Y TLI + G A +M G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P + ++ DGL GK + A
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKA 484
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 94/208 (45%)
Query: 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCV 65
+ P + L+ GL A ++++M+ +G PDL T+ +++ +CK G+++ +
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 66 EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125
+ + K ADV Y +I A+ +++A L + G P Y +I+
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 126 FRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS 185
G++ DA S++ + PN ++ LI + G+ VEA EM + + P
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 186 RCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
+ + +G + D A+ + +L +S
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMIS 388
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 86/207 (41%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G+ P + L+ G + + A +V++M P+ TFN+LI + +
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 200
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + + G D+ TY ++ + K G ID A LL + + +Y
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 260
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II +DA F+E+ KG PN Y +LI GR+ +A+ L +M E
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P F + D GK AEK+
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKL 347
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
++ L N + A + +M +G P++ T+NSLI +C G + + +
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
+V T+ LI A K G + EA +L +++ +P Y+ +I G + D+A
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
F + K PN Y TLI + R E EM++ GL + ++ + GL
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Query: 196 KNCGKHDLAEKIEQLEVS 213
G D+A+KI + VS
Sbjct: 441 FQAGDCDMAQKIFKKMVS 458
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%)
Query: 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
R+ L + +L L+ A + +M++ P + FN L+ I K + + + + +
Sbjct: 48 REKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQ 107
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
L D+ +Y ILI + + A +L +++ G+ P + ++ G +
Sbjct: 108 NLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRIS 167
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
+A ++ + + PN + TLI + EA + M G P + V
Sbjct: 168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227
Query: 193 DGLKNCGKHDLA 204
+GL G DLA
Sbjct: 228 NGLCKRGDIDLA 239
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G ++L+QGL AG + A+++ +M+ G P++ T+N+L++ +CK+G+
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + ++ + + + TY I+I + KAG +++ + L NL G P Y
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 541
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G R+G ++A F E+K G PN Y TLI R G +A + EM G
Sbjct: 542 MISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 601
Query: 181 LTPISRCFDLVTDGLKN 197
+ LVT+ L +
Sbjct: 602 FAGDASTIGLVTNMLHD 618
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 95/207 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G+ P + L+ G ++ + A +V++M G P+ TFN+LI + +
Sbjct: 142 MMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 201
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + G D+ TY +++ + K G D AF LL+ + + P +Y
Sbjct: 202 ASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNT 261
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + DDA F E++ KG PN Y++LI+ GR+ +A+ L +M E
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P F + D GK AEK+
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKL 348
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 107/247 (43%), Gaps = 36/247 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P + L+ G L+ AKQM M+ + PD+ T+N+LI+ CK
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF------ 114
VE +E++ + + G + TY ILI + +AG D A + +V DG P
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 115 ---------------------------PSLYA--PIIKGAFRRGQFDDAFCFFSEIKIKG 145
P++Y +I+G + G+ +D + F + +KG
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD-LVTDGLKNCGKHDLA 204
P+ Y T+I+ R G EA EM E G P S C++ L+ L++ + A
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 205 EKIEQLE 211
E I+++
Sbjct: 592 ELIKEMR 598
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ NP V L+ + G L A+++ ++M+K+ DP + T++SLI C
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +M+ + DV TY LI K ++E + + + G Y
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+G F+ G D A F E+ G PPN Y TL+ + G+ +A +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 181 LTPISRCFDLVTDGLKNCGK 200
+ P ++++ +G+ GK
Sbjct: 497 MEPTIYTYNIMIEGMCKAGK 516
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M P V + ++ GL +++ A + +M +G P++ T++SLI +C G
Sbjct: 247 MEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + DV T+ LI A K G + EA +L +V+ +P Y+
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSS 366
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + D+A F + K P+ Y TLI + R E EM++ G
Sbjct: 367 LINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG 426
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
L + ++++ GL G D+A++I + VS
Sbjct: 427 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 89/204 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P V L+ L N G A ++++ MI++ +PD+ TF++LI+ K G+
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++Y + K + TY LI +DEA ++ +V P Y
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 401
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + + ++ F E+ +G N Y LI + G A EM G
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P ++ + DGL GK + A
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKA 485
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 4/201 (1%)
Query: 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
R+ L + L+ L+ A + +M+K P + F+ L+ I K + + + + +
Sbjct: 49 REKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
LG + TY ILI + + A +L +++ G+ P + ++ G +
Sbjct: 109 NLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRIS 168
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
+A ++ + G+ PN + TLI + EA + M G P + +V
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVV 228
Query: 193 DGLKNCGKHDLA----EKIEQ 209
+GL G DLA K+EQ
Sbjct: 229 NGLCKRGDTDLAFNLLNKMEQ 249
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Query: 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNL 106
T++ LI C+ ++ + + + KLG ++ T L+ + I EA L+ +
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 107 VEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT-MCGRGGR 165
G+ P + +I G F + +A + KG P+ Y ++ +C RG
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 166 FVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
+ A N L +M + L P ++ + DGL
Sbjct: 238 DL-AFNLLNKMEQGKLEPGVLIYNTIIDGL 266
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 105/212 (49%), Gaps = 2/212 (0%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G+ P + L++GL G + A +V++M++ G PD+ T+NS++ IC+SG+
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+++ + + ADV TY +I ++ + G ID A L + G Y +++G
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ G+++D ++ + PN + L+ + + G+ EA EM G++P
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Query: 185 SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216
++ + DG C ++ L+E L++ +R+
Sbjct: 333 IITYNTLMDGY--CMQNRLSEANNMLDLMVRN 362
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 93/195 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+S +G +LVQG +G ++ A+++ +M+ G PD+ T+ L++ +C +G+
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E +E++ + K + Y +I + K G +++A+ L +L G P Y
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G ++G +A +++ G+ PN Y TLI R G +A + EM G
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573
Query: 181 LTPISRCFDLVTDGL 195
+ + +V D L
Sbjct: 574 FSADASSIKMVIDML 588
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 35/218 (16%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLI-------- 52
M +G +P + + L+ G L A M++ M++ PD+ TF SLI
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR 383
Query: 53 ---------------------------ETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85
+ C+SG+++ E++ + G DV TY I
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
L+ + G +++A + +L + + +Y II+G + G+ +DA+ F + KG
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
PN YT +I+ + G EA L +M E G P
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAP 541
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 1/214 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG V + LV+GL AG ++ M+ + P++ TFN L++ K G+
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ E+Y + G ++ TY L+ + EA +L +V + +P +
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + DD F I +G N Y+ L+ + G+ A EM G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI-EQLEVS 213
+ P + ++ DGL + GK + A +I E L+ S
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%)
Query: 29 AKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88
A ++ K++K G +PD TFN+LI+ + G+V V + + + G DV TY ++
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201
Query: 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148
+ ++G A LL + E Y+ II R G D A F E++ KG
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261
Query: 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ Y +L+ + G++ + A L +M + P F+++ D GK A ++
Sbjct: 262 SVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANEL 320
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 5/192 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P V + +V G+ +G A ++ KM ++ D+ T++++I+++C+ G
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + ++ + G + V TY L+ + KAG ++ LL ++V P +
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ + G+ +A + E+ +G PN Y TL+ R EA N L M
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 181 LTPISRCFDLVT 192
+P D+VT
Sbjct: 364 CSP-----DIVT 370
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 68/164 (41%)
Query: 39 QGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE 98
G ++ T N +I C+ + F + V KLG D +T+ LI + G + E
Sbjct: 117 NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSE 176
Query: 99 AFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158
A L+ +VE+G P Y I+ G R G A +++ + + Y+T+I
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIID 236
Query: 159 MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHD 202
R G A + EM G+ ++ + GL GK +
Sbjct: 237 SLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWN 280
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 9/202 (4%)
Query: 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE----VE 62
N V R+ L G+++ + A + +MI+ P L F+ I ++ + ++
Sbjct: 51 NGNVCFRERLRSGIVDIKK-DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLD 109
Query: 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122
FC ++ + G ++ T I+I + A+ +L +++ G+ P + + +I
Sbjct: 110 FCKQLELN----GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLI 165
Query: 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLT 182
KG F G+ +A + G P+ Y +++ R G A + L +M E +
Sbjct: 166 KGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVK 225
Query: 183 PISRCFDLVTDGLKNCGKHDLA 204
+ + D L G D A
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAA 247
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KGF+P V ++L+ L G L A ++ KM + G P+ ++N L+ CK +
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +E + G D+ TY ++ A+ K G +++A +L+ L G +P Y
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G+ A E++ K P+ Y++L+ R G+ EA + E MG
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P + F+ + GL + D A
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRA 538
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+G P V ++LV G+ G L+ A + +N M G P++ T N ++ ++C +G
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + G V T+ ILI + + G++ A +L + + G P Y P
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G + + D A + + +G P+ Y T++T + G+ +A L +++ G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+P+ ++ V DGL GK A K+
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKL 471
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 93/195 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P + L+ G ++ A + + +M+ +G PD+ T+N+++ +CK G+
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VE VE+ + G + TY +I ++KAG +A +LL + P Y+
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSS 489
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G R G+ D+A FF E + G PN + +++ + + A ++L+ M G
Sbjct: 490 LVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRG 549
Query: 181 LTPISRCFDLVTDGL 195
P + ++ +GL
Sbjct: 550 CKPNETSYTILIEGL 564
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 2/205 (0%)
Query: 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVE 66
+P V + +++ L ++G L+ A +++++M+++ PD+ T+ LIE C+ V ++
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260
Query: 67 MYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126
+ + G DV TY +L+ + K G +DEA + L+++ G P + I++
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320
Query: 127 RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186
G++ DA +++ KG P+ + LI R G A + L +M + G P S
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 187 CFDLVTDGLKNCGKHDLAEKIEQLE 211
++ + G C + + IE LE
Sbjct: 381 SYNPLLHGF--CKEKKMDRAIEYLE 403
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P + + ++ L G +E A +++N++ +G P L T+N++I+ + K+G+
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+++ + D TY L+ +S+ G +DEA + H G P +
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNS 524
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
I+ G + Q D A F + +G PN YT LI G EA L E+ G
Sbjct: 525 IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Query: 181 L 181
L
Sbjct: 585 L 585
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 36/229 (15%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVE--------- 66
L++G G A +++ + G+ PD+ T+N +I CK+GE+ +
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSP 202
Query: 67 -------MYYSVCKLGSCA----------------DVSTYKILIPAVSKAGMIDEAFRLL 103
+ S+C G DV TY ILI A + + A +LL
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262
Query: 104 HNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI-TMCGR 162
+ + G P Y ++ G + G+ D+A F +++ G PN + ++ +MC
Sbjct: 263 DEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 163 GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211
GR+++A L +M G +P F+++ + L C K L I+ LE
Sbjct: 323 -GRWMDAEKLLADMLRKGFSPSVVTFNILINFL--CRKGLLGRAIDILE 368
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 3/190 (1%)
Query: 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS 76
++ ++ G LE + + M+ G+ PD+ +LI C+ G+ ++ + G+
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 77 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFC 136
DV TY ++I KAG I+ A +L + +P Y I++ G+ A
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAME 225
Query: 137 FFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLK 196
+ + P+ YT LI R A L EM + G TP ++++ +G+
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285
Query: 197 NCGKHDLAEK 206
G+ D A K
Sbjct: 286 KEGRLDEAIK 295
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
KG P V ++L++ LLN G E ++++ KM + DP++ T++ LI T+C+ G++E
Sbjct: 292 KGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEE 351
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
+ + + + G D +Y LI A + G +D A L ++ DG P Y ++
Sbjct: 352 AMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLA 411
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ G+ D A F ++ G PN Y T+ + G + A + ++EM G+ P
Sbjct: 412 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDP 471
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 2/212 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M K F+P ++++ L + G L+ A +++N+++ P + T+ LIE G
Sbjct: 184 MRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGG 243
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ +++ + G D+ TY +I + K GM+D AF ++ NL G P Y
Sbjct: 244 VDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNI 303
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+++ +G++++ +++ + PN Y+ LIT R G+ EA N L M E G
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212
LTP + +D + G+ D+A IE LE
Sbjct: 364 LTPDAYSYDPLIAAFCREGRLDVA--IEFLET 393
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P V +L++ + G ++ A +++++M+ +G PD+ T+N++I +CK G V+ EM
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEM 285
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
++ G DV +Y IL+ A+ G +E +L+ + + +P Y+ +I R
Sbjct: 286 VRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 345
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
G+ ++A +K KG P+ Y LI R GR A +L M G P
Sbjct: 346 DGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVN 405
Query: 188 FDLVTDGLKNCGKHDLAEKI 207
++ V L GK D A +I
Sbjct: 406 YNTVLATLCKNGKADQALEI 425
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 2/208 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P D L+ G L+ A + + MI G PD+ +N+++ T+CK+G+
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +E++ + ++G + S+Y + A+ +G A ++ ++ +G +P Y
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I R G D+AF +++ P+ Y ++ + R +A N L M G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIE 208
P + ++ +G+ G AE +E
Sbjct: 539 CRPNETTYTVLIEGIGFAGYR--AEAME 564
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 2/205 (0%)
Query: 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVE 66
+P V +L+ L G +E A ++ M ++G PD +++ LI C+ G ++ +E
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 67 MYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126
++ G D+ Y ++ + K G D+A + L E G +P S Y + +
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 127 RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186
G A E+ G P+ Y ++I+ R G EA L++M P
Sbjct: 450 SSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVV 509
Query: 187 CFDLVTDGLKNCGKHDLAEKIEQLE 211
+++V G C H + + I LE
Sbjct: 510 TYNIVLLGF--CKAHRIEDAINVLE 532
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 5/209 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG+NP V L++G + A +++ + K G PD+ +N+LI CK
Sbjct: 115 MVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ-PDVFAYNALINGFCKMNR 173
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + D TY I+I ++ G +D A ++L+ L+ D P Y
Sbjct: 174 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTI 233
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT-MCGRGGRFVEAANYLMEMTEM 179
+I+ G D+A E+ +G P+ Y T+I MC G V+ A ++ E+
Sbjct: 234 LIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG--MVDRAFEMVRNLEL 291
Query: 180 -GLTPISRCFDLVTDGLKNCGKHDLAEKI 207
G P ++++ L N GK + EK+
Sbjct: 292 KGCEPDVISYNILLRALLNQGKWEEGEKL 320
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151
++G E+ LL +V G+NP L +IKG F A EI K P+
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVF 159
Query: 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
Y LI + R +A L M +P + ++++ L + GK DLA K+
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 37/243 (15%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+G P V + ++ L A ++ A +++N M+K G PD T+NS++ C SG+
Sbjct: 222 MLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 281
Query: 61 --------------------VEFCVEMYYSVCKLGSCA----------------DVSTYK 84
V + + M Y +CK G C +++TY
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYSLLMDY-LCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144
L+ + G + E LL +V +G +P +++ +I ++G+ D A FS+++ +
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 400
Query: 145 GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
G PN Y +I + + GR +A Y +M + GL+P + ++ + GL C K + A
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460
Query: 205 EKI 207
E++
Sbjct: 461 EEL 463
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 1/211 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+G +P + L+ GL E A++++ +M+ +G + FNS+I++ CK G
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V +++ + ++G +V TY LI AG +DEA +LL +V G P Y+
Sbjct: 492 VIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYST 551
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + +DA F E++ G P+ Y ++ + R A + +TE G
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611
Query: 181 LTPISRCFDLVTDGL-KNCGKHDLAEKIEQL 210
++++ GL KN D + + L
Sbjct: 612 TQIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 3/186 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ---GSDPDLETFNSLIETICK 57
M++ G P V ++L++GL + + A ++++ M GS PD+ ++ ++I K
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208
Query: 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL 117
G+ + Y+ + G DV TY +I A+ KA +D+A +L+ +V++G P
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268
Query: 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177
Y I+ G GQ +A F +++ G P+ Y+ L+ + GR +EA MT
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328
Query: 178 EMGLTP 183
+ GL P
Sbjct: 329 KRGLKP 334
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 6/217 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P V LL+ L G A+++ + M K+G P++ T+ +L++ G
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 61 VEFCVEMYYSV---CKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL 117
+ VEM+ + + G D + ILI A +K G +D+A + + + G NP
Sbjct: 352 L---VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408
Query: 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177
Y +I + G+ +DA +F ++ +G P VY +LI ++ A ++EM
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 178 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214
+ G+ + F+ + D G+ +EK+ +L V +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI 505
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G NP ++ L +G +E A +MI +G P +NSLI +C +
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E E+ + G C + + +I + K G + E+ +L +V G P Y
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G+ D+A S + G PN Y+TLI + R +A EM G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 181 LTPISRCFDLVTDGL 195
++P ++++ GL
Sbjct: 577 VSPDIITYNIILQGL 591
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 96/207 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ +G P + L+QG G L +++ M++ G PD F+ LI K G+
Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGK 386
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ + ++ + + G + TY +I + K+G +++A ++++G +P +Y
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G +++ A E+ +G N + ++I + GR +E+ M +G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P ++ + +G GK D A K+
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKL 533
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 84/200 (42%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G P V ++ G G + A ++M+ +G PD+ T+NS+I +CK+ ++
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+E+ ++ K G D TY ++ +G EA L + DG P Y+ ++
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ G+ +A F + +G P Y TL+ G VE L M G+ P
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370
Query: 185 SRCFDLVTDGLKNCGKHDLA 204
F ++ GK D A
Sbjct: 371 HYVFSILICAYAKQGKVDQA 390
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 3/210 (1%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G P V + L+ G AG ++ A ++++ M+ G P+ T+++LI CK +E
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+ ++ + G D+ TY I++ + + A L + E G S Y I+ G
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ DDA F + + + +I + GR EA + + + GL P
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685
Query: 185 SRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214
+ L+ + + G L E+++QL +S+
Sbjct: 686 YWTYRLMAENIIGQG---LLEELDQLFLSM 712
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 81/178 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G +P + ++++QGL +AK++ ++ + G+ +L T+N ++ +CK+
Sbjct: 572 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKL 631
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++M+ ++C + + T+ I+I A+ K G DEA L +G P Y
Sbjct: 632 TDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRL 691
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178
+ + +G ++ F ++ G + + ++ + G A YL + E
Sbjct: 692 MAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 749
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/175 (18%), Positives = 75/175 (42%), Gaps = 1/175 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+++ G + ++++ GL + A QM + + TFN +I+ + K G
Sbjct: 607 ITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGR 666
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +++ + G + TY+++ + G+++E +L ++ ++G +
Sbjct: 667 NDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNF 726
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLME 175
I++ +RG+ A + S I K + I + GG++ E +L E
Sbjct: 727 IVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLS-GGKYQEYYRFLPE 780
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 5/156 (3%)
Query: 27 ESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS---CADVSTY 83
E A+ + ++++++G + N + + + V Y + + G+ D+ TY
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALADVARDSPAA-AVSRYNRMARAGADEVTPDLCTY 90
Query: 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF-CFFSEIK 142
ILI +AG +D F L N+++ G + P++KG + DA +
Sbjct: 91 GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150
Query: 143 IKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178
G PN Y L+ R EA L M +
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD 186
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G L+ G A ++A+ + +M+ G PD+ T+N L++ +C +G
Sbjct: 382 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGN 441
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VE + ++ + K D+ TY +I A+ KAG +++ + L +L G P Y
Sbjct: 442 VETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 501
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G R+G ++A F E+K G PN Y TLI R G +A + EM G
Sbjct: 502 MMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCG 561
Query: 181 LTPISRCFDLVTDGLKN 197
+ F LVT+ L +
Sbjct: 562 FAGDASTFGLVTNMLHD 578
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G+ P + + L+ G + + A +V++M++ G PD TF +L+ + + +
Sbjct: 136 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 195
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + + G D+ TY +I + K G D A LL+ + + +Y
Sbjct: 196 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNT 255
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + DDAF F++++ KG P+ Y LI+ GR+ +A+ L +M E
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P F+ + D GK AEK+
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKL 342
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G+ P LV GL A +V +M+ +G PDL T+ ++I +CK GE
Sbjct: 171 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 230
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + + K ADV Y +I + K +D+AF L + + G P Y P
Sbjct: 231 PDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNP 290
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178
+I G++ DA S++ K P+ + LI + G+ VEA EM +
Sbjct: 291 LISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVK 348
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 37/247 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QGSDPDLETFNSLIETICKSG 59
M +K NP + + L+ + G L A+++ ++M+K + PD+ +N+LI+ CK
Sbjct: 311 MLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYK 370
Query: 60 EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP------ 113
VE +E++ + + G + TY LI +A D A + +V DG +P
Sbjct: 371 RVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYN 430
Query: 114 ------------------FPSL-----------YAPIIKGAFRRGQFDDAFCFFSEIKIK 144
F + Y +I+ + G+ +D + F + +K
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490
Query: 145 GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD-LVTDGLKNCGKHDL 203
G PN YTT+++ R G EA +EM E G P S ++ L+ L++ +
Sbjct: 491 GVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAAS 550
Query: 204 AEKIEQL 210
AE I+++
Sbjct: 551 AELIKEM 557
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 1/214 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P + ++ GL G + A ++NKM K + D+ +N++I+ +CK
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKH 265
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +++ + G DV TY LI + G +A RLL +++E NP +
Sbjct: 266 MDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNA 325
Query: 121 IIKGAFRRGQFDDAFCFFSE-IKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I + G+ +A + E +K K P+ Y TLI + R E EM++
Sbjct: 326 LIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQR 385
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
GL + + + G D A+ + + VS
Sbjct: 386 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 419
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 4/177 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P V + L+ L N G A ++++ M+++ +PDL FN+LI+ K G+
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335
Query: 61 VEFCVEMYYSVCKLGSC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
+ ++Y + K C DV Y LI K ++E + + + G Y
Sbjct: 336 LVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYT 395
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT-MCGRGGRFVEAANYLME 175
+I G F+ D+A F ++ G P+ Y L+ +C G VE A + E
Sbjct: 396 TLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGN--VETALVVFE 450
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 35 KMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94
+M G +L T++ I C+ ++ + + + KLG + T L+
Sbjct: 100 QMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 159
Query: 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154
I EA L+ +VE G+ P + ++ G F+ + +A + +KG P+ Y
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 219
Query: 155 TLIT-MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
+I +C RG + A N L +M + + ++ + DGL
Sbjct: 220 AVINGLCKRGEPDL-ALNLLNKMEKGKIEADVVIYNTIIDGL 260
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%)
Query: 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
R+ L + +L L+ A + M+K P + F+ L+ I K + + + + +
Sbjct: 43 RENLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ 102
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
LG ++ TY I I + + A +L +++ G+ P ++ G +
Sbjct: 103 NLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRIS 162
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
+A ++ G+ P+ +TTL+ + + EA + M G P + V
Sbjct: 163 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVI 222
Query: 193 DGLKNCGKHDLA 204
+GL G+ DLA
Sbjct: 223 NGLCKRGEPDLA 234
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P V +L+ G +G +E A +++++MI +G PD+ T++ ++ +CK+G
Sbjct: 353 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGR 412
Query: 61 VEFCVEMYYSVCKLGSCADVST-YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
VE ++ Y+ C+ A S Y LI + KAG +DEA RL + E G Y
Sbjct: 413 VEEALD-YFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYN 471
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG--RGGRFVEAANYLMEMT 177
+I + + D+A F ++ + ++ VYT I + G + R EA M
Sbjct: 472 ALIDAFTKHRKVDEAIALFKRME-EEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMI 530
Query: 178 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ G+TP + CF ++ GL GK A KI
Sbjct: 531 DKGITPTAACFRALSTGLCLSGKVARACKI 560
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 94/189 (49%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
++Q S + +M ++G F+ +I +CK G++ ++ ++ + G
Sbjct: 298 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 357
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
S +V+ Y +LI +K+G +++A RLLH ++++G P Y+ ++ G + G+ ++A
Sbjct: 358 SKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEAL 417
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
+F + G N Y++LI G+ GR EA EM+E G T S C++ + D
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477
Query: 196 KNCGKHDLA 204
K D A
Sbjct: 478 TKHRKVDEA 486
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 93/200 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P + + L+ GL++A +++SA+++ M PD+ T+N++I+ CK+G+
Sbjct: 213 MKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQ 272
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +E + G AD TY +I A L + E G P ++
Sbjct: 273 TQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSL 332
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G+ ++ + F + KG PN +YT LI + G +A L M + G
Sbjct: 333 VIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392
Query: 181 LTPISRCFDLVTDGLKNCGK 200
P + +V +GL G+
Sbjct: 393 FKPDVVTYSVVVNGLCKNGR 412
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 1/193 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+GF P V ++V GL G +E A + G + ++SLI+ + K+G
Sbjct: 388 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGR 447
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNL-VEDGHNPFPSLYA 119
V+ ++ + + G D Y LI A +K +DEA L + E+G + Y
Sbjct: 448 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYT 507
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
++ G F+ + ++A + + KG P + L T G+ A L E+ M
Sbjct: 508 ILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPM 567
Query: 180 GLTPISRCFDLVT 192
G+ + C D++
Sbjct: 568 GVILDAACEDMIN 580
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%)
Query: 49 NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 108
N+LI++ K G VE + ++ + + G + TY L+ + A +D A R+ +
Sbjct: 191 NALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250
Query: 109 DGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168
P Y +IKG + GQ A +++ +GH ++ Y T+I C F
Sbjct: 251 GRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGS 310
Query: 169 AANYLMEMTEMGLTPISRCFDLVTDGLKNCGK 200
EM E G+ F LV GL GK
Sbjct: 311 CVALYQEMDEKGIQVPPHAFSLVIGGLCKEGK 342
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M DKG P L GL +G + A ++++++ G D +I T+CK+G
Sbjct: 529 MIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAAC-EDMINTLCKAGR 587
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL 117
++ ++ + + G ++I A+ K G D A +L+H+ + G+ S+
Sbjct: 588 IKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSV 644
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 99/205 (48%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G+ P L+ GL G + A ++V++M++ G P L T N+L+ +C +G+V
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
V + + + G + TY ++ + K+G A LL + E Y+ II G
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ G D+AF F+E++IKG + +YTTLI GR+ + A L +M + +TP
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316
Query: 185 SRCFDLVTDGLKNCGKHDLAEKIEQ 209
F + D GK AE++ +
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHK 341
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G + L+QG G LE AK++ +M+ + PD+ ++ L++ +C +GE
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E +E++ + K D+ Y I+I + A +D+A+ L +L G P Y
Sbjct: 473 PEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G ++G +A F +++ GH PN Y LI G ++A + E+ G
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592
Query: 181 LTPISRCFDLVTDGLKN 197
+ + +V D L +
Sbjct: 593 FSVDASTVKMVVDMLSD 609
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 99/213 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P + + LV GL G + A ++++M++ G P+ T+ +++ +CKSG+
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E+ + + D Y I+I + K G +D AF L + + G +Y
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+G G++DD ++ + P+ ++ LI + G+ EA EM + G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
++P + + + DG + D A + L VS
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 4/218 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KGF + L++G AG + +++ MIK+ PD+ F++LI+ K G+
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E++ + + G D TY LI K +D+A +L +V G P +
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + DD F ++ ++G + Y TLI G+ A EM
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA----EKIEQLEVSL 214
+ P + ++ DGL + G+ + A EKIE+ ++ L
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P +R ++L+ G A ++ ++ KM +G D T+N+LI+ C+ G+
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E E++ + D+ +YKIL+ + G ++A + + + +Y
Sbjct: 438 LEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI 497
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + DDA+ F + +KG P+ Y +I + G EA +M E G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 181 LTP 183
+P
Sbjct: 558 HSP 560
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 2/205 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G +P L+ G L+ A M++ M+ +G P++ TFN LI CK+
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +E++ + G AD TY LI + G ++ A L +V P Y
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G G+ + A F +I+ + +Y +I + +A + + G
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAE 205
+ P + ++++ GL C K L+E
Sbjct: 523 VKPDVKTYNIMIGGL--CKKGSLSE 545
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + P + +L+ GL + G E A ++ K+ K + D+ +N +I +C + +
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ +++ S+ G DV TY I+I + K G + EA L + EDGH+P Y
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNI 567
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG 163
+I+ G + EIK G + ++ M G
Sbjct: 568 LIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDG 610
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 87/201 (43%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+++ GL G L++A + N+M +G D+ + +LI C +G + ++ + K
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134
DV + LI K G + EA L +++ G +P Y +I G + Q D A
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371
Query: 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194
+ KG PN + LI + + +M+ G+ + ++ + G
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 195 LKNCGKHDLAEKIEQLEVSLR 215
GK ++A+++ Q VS R
Sbjct: 432 FCELGKLEVAKELFQEMVSRR 452
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 89/194 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + GF P +++ + +G A +++ KM ++ D ++ +I+ +CK G
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ ++ + G AD+ Y LI AG D+ +LL ++++ P ++
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + G+ +A E+ +G P+ YT+LI + + +A + L M G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382
Query: 181 LTPISRCFDLVTDG 194
P R F+++ +G
Sbjct: 383 CGPNIRTFNILING 396
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%)
Query: 32 MVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91
+ +M +G +L T + +I C+ ++ + KLG D T+ LI +
Sbjct: 94 LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153
Query: 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151
G + EA L+ +VE GH P ++ G G+ DA + G PN
Sbjct: 154 LEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEV 213
Query: 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
Y ++ + + G+ A L +M E + + + ++ DGL G D A
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNA 266
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P + + L+ G + A+ + M G PDL T++ L+ET K
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E ++ + GS D+++Y +L+ A +K+G I EA + H + G P + Y+
Sbjct: 298 LEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ + G++DD F E+K P+ Y LI + G GG F E +M E
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN 417
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209
+ P ++ + G H+ A KI Q
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQ 446
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 91/204 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+D G P + LV+ LE ++ +M GS PD+ ++N L+E KSG
Sbjct: 273 MNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGS 332
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + +++ + G + +TY +L+ ++G D+ +L + +P + Y
Sbjct: 333 IKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNI 392
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+ G F + F ++ + P+ Y +I CG+GG +A L MT
Sbjct: 393 LIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAND 452
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P S+ + V + ++ A
Sbjct: 453 IVPSSKAYTGVIEAFGQAALYEEA 476
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P +L+ +G + +Q+ +M +DPD T+N LIE + G
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ V +++ + + D+ TY+ +I A K G+ ++A ++L + + P Y
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+ + +++A F+ + G P+ + +L+ RGG E+ L + + G
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEK 206
+ F+ + K GK + A K
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVK 548
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ G P + ++L++ +G ++ A + ++M G P+ T++ L+ +SG
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGR 367
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +++ + + D +TY ILI + G E L H++VE+ P Y
Sbjct: 368 YDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEG 427
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II + G +DA + P+ YT +I G+ + EA M E+G
Sbjct: 428 IIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVG 487
Query: 181 LTPISRCF 188
P F
Sbjct: 488 SNPSIETF 495
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 78/191 (40%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +P ++L++ GY + + + M+++ +PD+ET+ +I K G
Sbjct: 378 MKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGL 437
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E ++ + Y +I A +A + +EA + + E G NP +
Sbjct: 438 HEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHS 497
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ R G ++ S + G P NR + I +GG+F EA ++M +
Sbjct: 498 LLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSR 557
Query: 181 LTPISRCFDLV 191
P R + V
Sbjct: 558 CDPDERTLEAV 568
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142
Y I+I + + G++D+ + + G + Y +I R G+++ + +K
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203
Query: 143 IKGHPPNRPVYTTLITMCGRGGRFVEA-ANYLMEMTEMGLTPISRCFDLVTDG--LKNCG 199
+ P+ Y T+I C RGG E EM G+ P D+VT L C
Sbjct: 204 NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP-----DIVTYNTLLSACA 258
Query: 200 KHDLAEKIEQL 210
L ++ E +
Sbjct: 259 IRGLGDEAEMV 269
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G NP + L+ G ++ ++ ++++++ G + +TFN+ IE + G+
Sbjct: 483 MHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE 98
E V+ Y + K D T + ++ S A ++DE
Sbjct: 543 FEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDE 580
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 7/157 (4%)
Query: 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLL 103
D+E+ + + ++ G + C++++ + L + + ++ + G + RL
Sbjct: 75 DVESLINKLSSLPPRGSIARCLDIFKNKLSL------NDFALVFKEFAGRGDWQRSLRLF 128
Query: 104 HNLVEDGH-NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR 162
+ P +Y +I R G D F E+ +G + YT LI GR
Sbjct: 129 KYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGR 188
Query: 163 GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG 199
GR+ + L M ++P ++ V + G
Sbjct: 189 NGRYETSLELLDRMKNEKISPSILTYNTVINACARGG 225
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 14/182 (7%)
Query: 11 RGRDLL---VQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
R RD ++ G E A + M K DPD T +++ + V+ C E
Sbjct: 525 RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQ 584
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ + + Y +++ K D+ LL ++ + + + +IK
Sbjct: 585 FEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK---- 640
Query: 128 RGQFDDAFCF------FSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181
G +DD + ++ +G Y L+ G+ AA L E T+ GL
Sbjct: 641 -GDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGL 699
Query: 182 TP 183
P
Sbjct: 700 FP 701
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 2/215 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ +G++ + L++G G A M +M++ G P + T+ SLI ++CK+G
Sbjct: 301 MNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGN 360
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +E + G C + TY L+ S+ G ++EA+R+L + ++G +P Y
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G+ +DA ++K KG P+ Y+T+++ R EA EM E G
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215
+ P + + + G C + E + E LR
Sbjct: 481 IKPDTITYSSLIQGF--CEQRRTKEACDLYEEMLR 513
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 97/207 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P R LV G GY+ A +++ +M G P + T+N+LI C +G+
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + + + + G DV +Y ++ ++ +DEA R+ +VE G P Y+
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSS 490
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+G + + +A + E+ G PP+ YT LI G +A EM E G
Sbjct: 491 LIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P + ++ +GL + A+++
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRL 577
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 2/207 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ KG P + ++++ GL G ++ ++ +M ++G D T+N+LI+ CK G
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ M+ + + G V TY LI ++ KAG ++ A L + G P Y
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G ++G ++A+ E+ G P+ Y LI G+ +A L +M E G
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
L+P + V G C +D+ E +
Sbjct: 446 LSPDVVSYSTVLSGF--CRSYDVDEAL 470
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 100/207 (48%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P V ++L++G AG ++ A + +KM +G P++ T+N+LI+ CK +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ ++ S+ G ++ +Y ++I + + G + E +L + G++ Y
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + G F A +E+ G P+ YT+LI + G A +L +M G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
L P R + + DG G + A ++
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRV 402
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 2/211 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P V + L+ G ++ +++ M +G +P+L ++N +I +C+ G
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + + G D TY LI K G +A + ++ G P Y
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + G + A F +++++G PN YTTL+ + G EA L EM + G
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211
+P ++ + +G +C + + I LE
Sbjct: 411 FSPSVVTYNALING--HCVTGKMEDAIAVLE 439
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 2/210 (0%)
Query: 5 GFNPPVRGRDLLVQGLLNAGY-LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
GF P V + ++ + + + A+ + +M++ P++ T+N LI C +G ++
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
+ ++ + G +V TY LI K ID+ F+LL ++ G P Y +I
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
G R G+ + +E+ +G+ + Y TLI + G F +A EM GLTP
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 184 ISRCFDLVTDGLKNCGKHDLA-EKIEQLEV 212
+ + + G + A E ++Q+ V
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+D GF+P V + L+ G G +E A ++ M ++G PD+ ++++++ C+S +
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ + + + + G D TY LI + EA L ++ G P Y
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176
+I G + A +E+ KG P+ Y+ LI + R EA L+++
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 80/161 (49%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG +P V ++ G + ++ A ++ +M+++G PD T++SLI+ C+
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++Y + ++G D TY LI A G +++A +L + +VE G P Y+
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG 161
+I G ++ + +A ++ + P+ Y TLI C
Sbjct: 561 LINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 56/134 (41%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L++G G + A Q+ M+ + PD +N +I C++G++ +Y + K G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
T L+ A+ K G ++E ++ +++ +++ R G D
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVL 730
Query: 136 CFFSEIKIKGHPPN 149
+E+ G PN
Sbjct: 731 DVLAEMAKDGFLPN 744
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 15/198 (7%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIET------ 54
M +KG P V +L+ GL AK+++ K+ + S P T+++LIE
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605
Query: 55 ---------ICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHN 105
C G + +++ S+ D + Y I+I +AG I +A+ L
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665
Query: 106 LVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR 165
+V+ G ++K + G+ ++ + L+ + R G
Sbjct: 666 MVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGN 725
Query: 166 FVEAANYLMEMTEMGLTP 183
+ L EM + G P
Sbjct: 726 MDVVLDVLAEMAKDGFLP 743
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 1/207 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+++KG P ++L+ L+ A + + + ++ +G PD+ F + I CK G+
Sbjct: 230 LANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGK 288
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VE V+++ + + G +V T+ +I + G DEAF +VE G P Y+
Sbjct: 289 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 348
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++KG R + DA+ E+ KG PPN VY LI G +A M G
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 408
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
L+ S ++ + G G+ D AE++
Sbjct: 409 LSLTSSTYNTLIKGYCKNGQADNAERL 435
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G P V +++ G A E ++ ++M+ + P+ +N LI C+SG +
Sbjct: 618 GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMA 677
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+E+ + G + +TY LI +S ++EA L + +G P Y +I G
Sbjct: 678 LELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 737
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ GQ C E+ K PN+ YT +I R G EA+ L EM E G+ P
Sbjct: 738 YGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPD 797
Query: 185 S 185
S
Sbjct: 798 S 798
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++G P + +LV+GL A + A ++ +M K+G P++ +N+LI++ ++G
Sbjct: 334 MVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGS 393
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +E+ + G STY LI K G D A RLL ++ G N +
Sbjct: 394 LNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 453
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I FD A F E+ ++ P + TTLI+ + G+ +A + G
Sbjct: 454 VICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKG 513
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209
+R + + GL GK D A +I++
Sbjct: 514 FVVDTRTSNALLHGLCEAGKLDEAFRIQK 542
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P +L+ GL N +E A Q + + G PD+ T++ +I+ CK+
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E E + + + Y LI A ++G + A L ++ G +P + Y
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 698
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + ++A F E++++G PN YT LI G+ G+ V+ L EM
Sbjct: 699 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 758
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P + ++ G G A ++
Sbjct: 759 VHPNKITYTVMIGGYARDGNVTEASRL 785
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 1/178 (0%)
Query: 36 MIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM 95
+ +G P T N L+ ++ ++ E + C E + VCK G DV + I A K G
Sbjct: 230 LANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGK 288
Query: 96 IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTT 155
++EA +L + E G P + +I G G++D+AF F ++ +G P Y+
Sbjct: 289 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 348
Query: 156 LITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
L+ R R +A L EMT+ G P ++ + D G + A +I+ L VS
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 406
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%)
Query: 3 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVE 62
+KGF R + L+ GL AG L+ A ++ +++ +G D ++N+LI C +++
Sbjct: 511 NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLD 570
Query: 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122
+ K G D TY ILI + ++EA + + +G P Y+ +I
Sbjct: 571 EAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMI 630
Query: 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLT 182
G + + ++ FF E+ K PN VY LI R GR A +M G++
Sbjct: 631 DGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGIS 690
Query: 183 PISRCFDLVTDGL 195
P S + + G+
Sbjct: 691 PNSATYTSLIKGM 703
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 86/194 (44%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ GL G A ++ + + +G D T N+L+ +C++G+++ + + G
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 548
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
D +Y LI +DEAF L +V+ G P Y+ +I G F + ++A
Sbjct: 549 CVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAI 608
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
F+ + K G P+ Y+ +I C + R E + EM + P + ++ +
Sbjct: 609 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAY 668
Query: 196 KNCGKHDLAEKIEQ 209
G+ +A ++ +
Sbjct: 669 CRSGRLSMALELRE 682
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
+ L+ G L+ A +++M+K+G PD T++ LI + +VE ++ + +
Sbjct: 557 NTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR 616
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G DV TY ++I KA +E ++ P +Y +I+ R G+
Sbjct: 617 NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSM 676
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTD 193
A ++K KG PN YT+LI R EA EM GL P + + D
Sbjct: 677 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 736
Query: 194 GLKNCGK 200
G G+
Sbjct: 737 GYGKLGQ 743
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P V + ++ GL G + A KM+++G +P L T++ L++ + ++
Sbjct: 299 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 358
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + K G +V Y LI + +AG +++A + +V G + S Y
Sbjct: 359 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 418
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + GQ D+A E+ G N+ +T++I + F A ++ EM
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
++P + GL GKH A
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKA 502
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 35/235 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ KGF P V + L+ + AG L A ++ + M+ +G T+N+LI+ CK+G+
Sbjct: 369 MTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQ 428
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + +G + ++ +I + M D A R + ++ +P L
Sbjct: 429 ADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTT 488
Query: 121 IIKGAFRR-----------------------------------GQFDDAFCFFSEIKIKG 145
+I G + G+ D+AF EI +G
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 548
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGK 200
+R Y TLI+ C + EA +L EM + GL P + + ++ GL N K
Sbjct: 549 CVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 603
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG +P L++G+ +E AK + +M +G +P++ + +LI+ K G+
Sbjct: 684 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQ 743
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + + TY ++I ++ G + EA RLL+ + E G P Y
Sbjct: 744 MVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKE 803
Query: 121 IIKGAFRRGQFDDAF 135
I G ++G +AF
Sbjct: 804 FIYGYLKQGGVLEAF 818
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P V L+ G G + + ++ +M + P+ T+ +I + G
Sbjct: 719 MRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGN 778
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + + + G D TYK I K G + EAF+ D N YA
Sbjct: 779 VTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK-----GSDEEN-----YAA 828
Query: 121 IIKG 124
II+G
Sbjct: 829 IIEG 832
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 2/211 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG V L+ GL N G + +M+ +MI + PD+ TF++LI+ K G+
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E+Y + G D TY LI K + EA ++ +V G P Y+
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + + DD F EI KG PN Y TL+ + G+ A EM G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211
+ P + ++ DGL C +L + +E E
Sbjct: 451 VPPSVVTYGILLDGL--CDNGELNKALEIFE 479
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 92/197 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+S KG P + LV G +G L +AK++ +M+ +G P + T+ L++ +C +GE
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +E++ + K + Y I+I + A +D+A+ L +L + G P Y
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G ++G +A F ++K G P+ Y LI G + + + EM G
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 590
Query: 181 LTPISRCFDLVTDGLKN 197
+ S +V D L +
Sbjct: 591 FSADSSTIKMVIDMLSD 607
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 92/204 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + P V L+ + G L AK++ N+MI +G PD T+NSLI+ CK
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 365
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +M+ + G D+ TY ILI + KA +D+ RL + G P Y
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G + G+ + A F E+ +G PP+ Y L+ G +A +M +
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+T ++++ G+ N K D A
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDA 509
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 2/185 (1%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ GL G + A ++++M++ G PD T+ ++ +CKSG ++++ + +
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
A V Y I+I ++ K G D+A L + + G Y+ +I G G++DD
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
E+ + P+ ++ LI + + G+ +EA EM G+ P + ++ + DG
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 360
Query: 196 --KNC 198
+NC
Sbjct: 361 CKENC 365
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 1/213 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P + +L+ A ++ ++ ++ +G P+ T+N+L+ C+SG+
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E++ + G V TY IL+ + G +++A + + + +Y
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + DDA+ F + KG P+ Y +I + G EA +M E G
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 181 LTPISRCFD-LVTDGLKNCGKHDLAEKIEQLEV 212
TP ++ L+ L G E IE+++V
Sbjct: 556 CTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 588
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 85/196 (43%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G+ P LV G G + A +V++M++ PDL T ++LI +C G V
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+ + + + G D TY ++ + K+G A L + E Y+ +I
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ G FDDA F+E+++KG + Y++LI G++ + A L EM + P
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 185 SRCFDLVTDGLKNCGK 200
F + D GK
Sbjct: 315 VVTFSALIDVFVKEGK 330
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 91/213 (42%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ V +++ L G + A + N+M +G D+ T++SLI +C G+
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +M + DV T+ LI K G + EA L + ++ G P Y
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + +A F + KG P+ Y+ LI + R + E++ G
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
L P + ++ + G GK + A+++ Q VS
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 448
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + GF P ++ L +G A + KM ++ + ++ +I+++CK G
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL--Y 118
+ + ++ + G ADV TY LI + G D+ ++L ++ G N P + +
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI--GRNIIPDVVTF 318
Query: 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157
+ +I + G+ +A ++E+ +G P+ Y +LI
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 63/166 (37%)
Query: 39 QGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE 98
G + D+ T +I C+ ++ F + KLG D T+ L+ G + E
Sbjct: 99 NGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSE 158
Query: 99 AFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158
A L+ +VE P + +I G +G+ +A + G P+ Y ++
Sbjct: 159 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 218
Query: 159 MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
+ G A + +M E + + +V D L G D A
Sbjct: 219 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 2/217 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG +P V L+ L N+G +E A + +M+K+G P++ T +SL++ G
Sbjct: 272 MVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGT 331
Query: 61 VEFCVEMYYSVCK-LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
++++ + + G +V Y L+ G I +A + ++ E G +P Y
Sbjct: 332 TFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYG 391
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I G +RG D A ++++ G PN VYT ++ R +F EA + + M++
Sbjct: 392 SLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKE 451
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEKI-EQLEVSLR 215
P F+ GL + G+ D AEK+ Q+E R
Sbjct: 452 NCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHR 488
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 6/208 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS+KG P ++ + G ++ +++ + +P + +N+LI +CK +
Sbjct: 207 MSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERF-----EPVVSVYNALINGLCKEHD 261
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E+ + + G +V +Y LI + +G I+ AF L +++ G +P +
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321
Query: 121 IIKGAFRRGQFDDAFCFFSE-IKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
++KG F RG DA +++ I+ G PN Y TL+ G V+A + M E+
Sbjct: 322 LVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI 381
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEKI 207
G +P R + + +G G D A I
Sbjct: 382 GCSPNIRTYGSLINGFAKRGSLDGAVYI 409
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G +P V+ + ++ LL ++ + M + G +P++ T+N L++ +CK+ +V+
Sbjct: 141 GCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGA 200
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
++ + G C D +Y +I ++ + G++ E L + P S+Y +I G
Sbjct: 201 KKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGREL-----AERFEPVVSVYNALING 255
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ + AF E+ KG PN Y+TLI + G+ A ++L +M + G P
Sbjct: 256 LCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHP 314
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G P V + LVQG + G + A + + M + G P++ T+ SLI K G ++
Sbjct: 347 GLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGA 406
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
V ++ + G C +V Y ++ A+ + EA L+ + ++ P + IKG
Sbjct: 407 VYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKG 466
Query: 125 AFRRGQFDDAFCFFSEIKIKGH-PPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
G+ D A F +++ + PPN Y L+ + R EA E+ G+
Sbjct: 467 LCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEW 526
Query: 184 ISRCFDLVTDGLKNCG 199
S ++ + G N G
Sbjct: 527 SSSTYNTLLHGSCNAG 542
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G +P +R L+ G G L+ A + NKM+ G P++ + +++E +C+ +
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL--Y 118
+ + + K V T+ I + AG +D A ++ + E H P++ Y
Sbjct: 438 FKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQM-EQQHRCPPNIVTY 496
Query: 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157
++ G + + ++A+ EI ++G + Y TL+
Sbjct: 497 NELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLL 535
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 1/174 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P V +V+ L + A+ ++ M K+ P + TFN+ I+ +C +G
Sbjct: 413 MLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGR 472
Query: 61 VEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
+++ +++ + + C ++ TY L+ ++KA I+EA+ L + G S Y
Sbjct: 473 LDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYN 532
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYL 173
++ G+ G A ++ + G P+ +I + G+ AA L
Sbjct: 533 TLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML 586
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
+ L+ G NAG A Q+V KM+ G PD T N +I CK G+ E +M
Sbjct: 532 NTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML----D 587
Query: 74 LGSCA------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122
L SC DV +Y +I + ++ ++ LL ++ G P + ++ +I
Sbjct: 588 LVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLI 642
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Query: 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNL 106
TF +I + G+V+ + + G + +I + G+ + A + + +
Sbjct: 78 TFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRI 137
Query: 107 VEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166
E G +P +Y ++ + + + ++K G PN Y L+ + +
Sbjct: 138 KEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKV 197
Query: 167 VEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG----KHDLAEKIE 208
A L+EM+ G P + + V + G +LAE+ E
Sbjct: 198 DGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFE 243
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 100/200 (50%), Gaps = 1/200 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P + L+ G +AG + A ++N M K+G +P++ + LI+ +C++ +
Sbjct: 262 MKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEK 321
Query: 61 -VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
++ + ++ + + G AD+ TY LI K GMID+ + +L ++ + G P Y
Sbjct: 322 RMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYM 381
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
I+ ++ QF++ ++K +G P+ +Y +I + + G EA EM
Sbjct: 382 QIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441
Query: 180 GLTPISRCFDLVTDGLKNCG 199
GL+P F ++ +G + G
Sbjct: 442 GLSPGVDTFVIMINGFTSQG 461
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 1/182 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNA-GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG 59
M +GF P V +L+Q L ++ A ++ +M + G + D+ T+ +LI CK G
Sbjct: 297 MRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWG 356
Query: 60 EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
++ + + K G TY ++ A K +E L+ + G +P +Y
Sbjct: 357 MIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYN 416
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I+ A + G+ +A ++E++ G P + +I G +EA N+ EM
Sbjct: 417 VVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSR 476
Query: 180 GL 181
G+
Sbjct: 477 GI 478
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+L++ +A ++ A +++++M K G +PD F L++ +CK+G V+ +++ + +
Sbjct: 172 VLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDM-RE 230
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134
++ + L+ + G + EA +L + E G P ++ ++ G G+ DA
Sbjct: 231 KFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADA 290
Query: 135 FCFFSEIKIKGHPPNRPVYTTLI-TMCGRGGRFVEAANYLMEMTEMG 180
+ ++++ +G PN YT LI +C R EA +EM G
Sbjct: 291 YDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYG 337
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG--SDPDLETFNSLIETICKS 58
M G +P V +++ G + G+L A +M+ +G S P T SL+ + +
Sbjct: 438 MEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRD 497
Query: 59 GEVEFCVEMYYSVC-KLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS 116
++E +++ + K SC +VS + I I A+ G + EA +++E P P+
Sbjct: 498 DKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPN 557
Query: 117 LYAPIIKG 124
YA ++KG
Sbjct: 558 TYAKLMKG 565
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 39 QGSDPDL---ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM 95
+ ++P+L E F L+ + V+ VE+ + K G D + L+ A+ K G
Sbjct: 158 RKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGS 217
Query: 96 IDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV 152
+ EA ++ ED FP + ++ G R G+ +A ++K G P+ V
Sbjct: 218 VKEASKVF----EDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVV 273
Query: 153 YTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
+T L++ G+ +A + + +M + G P C+ ++ L
Sbjct: 274 FTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQAL 316
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 98/199 (49%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M++ GF P + L+ G NAG + A ++ M ++G +P+ + LI+ +CK
Sbjct: 278 MNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDR 337
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E ++++ + + ADV TY L+ K G ID+ + +L ++++ G P Y
Sbjct: 338 MEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMH 397
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
I+ ++ F++ +++ + P+ +Y +I + + G EA EM E G
Sbjct: 398 IMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENG 457
Query: 181 LTPISRCFDLVTDGLKNCG 199
L+P F ++ +GL + G
Sbjct: 458 LSPGVDTFVIMINGLASQG 476
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +GF P +L+Q L +E A ++ +M + + D+ T+ +L+ CK G+
Sbjct: 313 MRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGK 372
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ C + + K G TY ++ A K +E L+ + + ++P +Y
Sbjct: 373 IDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNV 432
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+ A + G+ +A ++E++ G P + +I G +EA+++ EM G
Sbjct: 433 VIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRG 492
Query: 181 LTPISR 186
L +S+
Sbjct: 493 LFSVSQ 498
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+LVQ +A ++ A +++++M K G +PD F L++ +CK G V+ +++ + ++
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDM-RM 246
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134
++ + L+ + G + EA +L + E G P Y ++ G G+ DA
Sbjct: 247 RFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADA 306
Query: 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194
+ +++ +G PN YT LI + R EA +EM + + G
Sbjct: 307 YDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSG 366
Query: 195 LKNCGKHD 202
GK D
Sbjct: 367 FCKWGKID 374
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%)
Query: 32 MVNKMIKQGSDPDL---ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88
++ +M K+ +P L E F L++ + V+ +E+ + K G D + L+
Sbjct: 169 LIEEMRKE--NPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLD 226
Query: 89 AVSKAGMIDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
A+ K G + +A +L ED FP + ++ G R G+ +A ++ G
Sbjct: 227 ALCKHGSVKDAAKLF----EDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAG 282
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
P+ YT L++ G+ +A + L +M G P + C+ ++ L + + A
Sbjct: 283 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 342
Query: 206 KI 207
K+
Sbjct: 343 KV 344
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG--SDPDLETFNSLIETICKS 58
M + G +P V +++ GL + G L A +M+ +G S T L+ T+ K
Sbjct: 453 MEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKD 512
Query: 59 GEVEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL 117
++E +++ + G+C +V ++ I I A+ G EA ++E P P
Sbjct: 513 KKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDT 572
Query: 118 YAPIIKG 124
+A ++KG
Sbjct: 573 FAKLMKG 579
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 3/208 (1%)
Query: 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVE 66
+P + +L+ GL G A++M + M +G P+ T+ LI +C+ G + +
Sbjct: 195 SPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARK 254
Query: 67 MYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126
++Y + G+ D + L+ K G + EAF LL +DG Y+ +I G F
Sbjct: 255 LFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLF 314
Query: 127 RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186
R ++ AF ++ + K P+ +YT LI + G+ +A L M G++P +
Sbjct: 315 RARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTY 374
Query: 187 CFDLVTDGLKNCGKHDLAE-KIEQLEVS 213
C++ V L CG+ L E + QLE+S
Sbjct: 375 CYNAVIKAL--CGRGLLEEGRSLQLEMS 400
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 2/179 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ +G +P +L+ GL G + A+++ +M G+ PD N+L++ CK G
Sbjct: 224 MTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGR 283
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E+ K G + Y LI + +A +AF L N+++ P LY
Sbjct: 284 MVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTI 343
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI-TMCGRGGRFVEAANYLMEMTE 178
+I+G + G+ +DA S + KG P+ Y +I +CGR G E + +EM+E
Sbjct: 344 LIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGR-GLLEEGRSLQLEMSE 401
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 2/205 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P + L+ G G + A +++ K G L ++SLI+ + ++
Sbjct: 259 MQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARR 318
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E+Y ++ K D+ Y ILI +SKAG I++A +LL ++ G +P Y
Sbjct: 319 YTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNA 378
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IK RG ++ E+ P+ +T LI R G EA E+ + G
Sbjct: 379 VIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSG 438
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAE 205
+P F+ + DGL C +L E
Sbjct: 439 CSPSVATFNALIDGL--CKSGELKE 461
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 98/216 (45%), Gaps = 14/216 (6%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M K P + +L+QGL AG +E A ++++ M +G PD +N++I+ +C G
Sbjct: 329 MLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGL 388
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + + + S D T+ ILI ++ + G++ EA + + + G +P + +
Sbjct: 389 LEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNA 448
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIK---------GHPPNRPVYTTLITMCGRGGRFVEAAN 171
+I G + G+ +A ++++ H NR T + G ++A
Sbjct: 449 LIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMV-----ESGSILKAYR 503
Query: 172 YLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
L + G +P ++++ +G G D A K+
Sbjct: 504 DLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKL 539
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS+ P +L+ + G + A+++ ++ K G P + TFN+LI+ +CKSGE
Sbjct: 399 MSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGE 458
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKIL-------IPAVSKAGMIDEAFRLLHNLVEDGHNP 113
++ E + K+ S + L + ++G I +A+R L + + G +P
Sbjct: 459 LK---EARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSP 515
Query: 114 FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169
Y +I G R G D A + +++KG P+ Y TLI R GR EA
Sbjct: 516 DIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEA 571
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
GF +RG L+ GL A A ++ M+K+ PD+ + LI+ + K+G++E
Sbjct: 298 GFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDA 357
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+++ S+ G D Y +I A+ G+++E L + E P + +I
Sbjct: 358 LKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICS 417
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176
R G +A F+EI+ G P+ + LI + G EA L +M
Sbjct: 418 MCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVE--MYYSVC 72
+L+ G E A + +M + PD+ T+N ++ + + EV F + +Y +
Sbjct: 132 VLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMRE-EVFFMLAFAVYNEML 190
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
K ++ T+ IL+ + K G +A ++ ++ G +P Y +I G +RG D
Sbjct: 191 KCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSAD 250
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
DA F E++ G+ P+ + L+ + GR VEA L + G R + +
Sbjct: 251 DARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLI 310
Query: 193 DGLKNCGKHDLA 204
DGL ++ A
Sbjct: 311 DGLFRARRYTQA 322
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 31 QMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90
Q + ++ G D F LI K G E VE + + + DV TY +++
Sbjct: 113 QTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVIL--- 169
Query: 91 SKAGMIDEAFRLLHNLVEDGH---NPFPSLYA--PIIKGAFRRGQFDDAFCFFSEIKIKG 145
+ M +E F +L V + N P+LY ++ G +++G+ DA F ++ +G
Sbjct: 170 -RVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRG 228
Query: 146 HPPNRPVYTTLIT-MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
PNR YT LI+ +C RG +A EM G P S + + DG G+ +
Sbjct: 229 ISPNRVTYTILISGLCQRGSA-DDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGR--MV 285
Query: 205 EKIEQLEV 212
E E L +
Sbjct: 286 EAFELLRL 293
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD 79
++ +G + A + + GS PD+ ++N LI C++G+++ +++ + G D
Sbjct: 492 MVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPD 551
Query: 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFF 138
TY LI + + G +EAF+L + +D P++Y ++ + R+ + AF +
Sbjct: 552 SVTYNTLINGLHRVGREEEAFKLFY--AKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLW 608
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 9/209 (4%)
Query: 2 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV 61
+D G +P + ++L+ G AG ++ A +++N + +G PD T+N+LI + + G
Sbjct: 509 ADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGRE 568
Query: 62 EFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI 121
E +++Y+ V Y+ L+ + + AF L ++ + A
Sbjct: 569 EEAFKLFYAKDDFRHSPAV--YRSLMTWSCRKRKVLVAFNLWMKYLKK-ISCLDDETANE 625
Query: 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181
I+ F+ G+ + A E+ + YT + + GRF EA + E +
Sbjct: 626 IEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKI 685
Query: 182 --TPISRCFDLVTDGLKNCGKHDLAEKIE 208
TP S C L+ GL C + L IE
Sbjct: 686 LVTPPS-CVKLI-HGL--CKREQLDAAIE 710
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 3/214 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG+ P + ++L+ G +E+A ++++ M+ G DPD+ T+NSL+ +CK+ +
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E +E Y ++ + G ++ T+ IL+ ++ + +DEA LL + NP +
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571
Query: 121 IIKGAFRRGQFDDAFCFFSEI-KIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I G + G D A+ F ++ + + P Y +I A EM +
Sbjct: 572 LIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR 631
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEK--IEQLE 211
L P + L+ DG G +L K +E +E
Sbjct: 632 CLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME 665
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMY------- 68
L++ L G ++ +++++K+IK+G P+L T+N I+ +C+ GE++ V M
Sbjct: 222 LLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQG 281
Query: 69 ------------YSVCK----------LGSCA------DVSTYKILIPAVSKAGMIDEAF 100
Y +CK LG D TY LI K GM+ A
Sbjct: 282 PKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAE 341
Query: 101 RLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160
R++ + V +G P Y +I G G+ + A F+E KG PN +Y TLI
Sbjct: 342 RIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGL 401
Query: 161 GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG 199
G +EAA EM+E GL P + F+++ +GL G
Sbjct: 402 SNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMG 440
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 4/210 (1%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
KG P V + L++GL N G + A Q+ N+M ++G P+++TFN L+ +CK G V
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
+ + G D+ T+ ILI S ++ A +L ++++G +P Y ++
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLN 504
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
G + +F+D + + KG PN + L+ R + EA L EM + P
Sbjct: 505 GLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNP 564
Query: 184 ISRCFDLVTDGL-KNC---GKHDLAEKIEQ 209
+ F + DG KN G + L K+E+
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 92/204 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G V +V G + ++ KM+ G L TFN L+ +CK G+
Sbjct: 172 MSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGD 231
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ C ++ V K G ++ TY + I + + G +D A R++ L+E G P Y
Sbjct: 232 VKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNN 291
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + +F +A + ++ +G P+ Y TLI +GG A + + G
Sbjct: 292 LIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNG 351
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
P + + DGL + G+ + A
Sbjct: 352 FVPDQFTYRSLIDGLCHEGETNRA 375
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 87/202 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++G P + L+ G G ++ A+++V + G PD T+ SLI+ +C GE
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGE 371
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++ G +V Y LI +S GMI EA +L + + E G P +
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G + G DA + KG+ P+ + LI + A L M + G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491
Query: 181 LTPISRCFDLVTDGLKNCGKHD 202
+ P ++ + +GL K +
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFE 513
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 35/235 (14%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE------- 60
P V + ++ L+++GY + A ++ +M +G PD+ +F +++ CK+
Sbjct: 109 PTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRL 168
Query: 61 -------------VEFCV---------------EMYYSVCKLGSCADVSTYKILIPAVSK 92
V +C E++ + G +ST+ L+ + K
Sbjct: 169 LNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCK 228
Query: 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV 152
G + E +LL +++ G P Y I+G +RG+ D A + +G P+
Sbjct: 229 KGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVIT 288
Query: 153 YTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
Y LI + +F EA YL +M GL P S ++ + G G LAE+I
Sbjct: 289 YNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERI 343
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 7/187 (3%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P + ++L++ L L+ A ++ +M + +PD TF +LI+ CK+G+
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGD 581
Query: 61 VEFCVEMYYSVCKLGSCADVS----TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS 116
++ ++ K+ VS TY I+I A ++ + A +L +V+ P
Sbjct: 582 LDGAYTLFR---KMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638
Query: 117 LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176
Y ++ G + G + + F E+ G P+ +I R EAA + M
Sbjct: 639 TYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698
Query: 177 TEMGLTP 183
+ GL P
Sbjct: 699 VQKGLVP 705
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 2/207 (0%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
GF P L+ GL + G A + N+ + +G P++ +N+LI+ + G +
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
++ + + G +V T+ IL+ + K G + +A L+ ++ G+ P + +I G
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ + ++A + G P+ Y +L+ + +F + M E G P
Sbjct: 471 YSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPN 530
Query: 185 SRCFDLVTDGLKNCGKHDLAEKIEQLE 211
F+++ + L C L E + LE
Sbjct: 531 LFTFNILLESL--CRYRKLDEALGLLE 555
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 4/188 (2%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+L++G AG +E + ++ ++ + G P++ + +LI+ CK GE+E ++++ + KL
Sbjct: 168 ILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKL 227
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP--IIKGAFRRGQFD 132
G A+ TY +LI + K G+ + F + + EDG FP+LY ++ + G+
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG--VFPNLYTYNCVMNQLCKDGRTK 285
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
DAF F E++ +G N Y TLI R + EA + +M G+ P ++ +
Sbjct: 286 DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLI 345
Query: 193 DGLKNCGK 200
DG GK
Sbjct: 346 DGFCGVGK 353
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+ +G +P + ++LV G G A +MV +M ++G P T+ LI+T +S
Sbjct: 364 LKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDN 423
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E +++ S+ +LG DV TY +LI G ++EA RL ++VE P +Y
Sbjct: 424 MEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNT 483
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G A E++ K PN Y +I + + + EA + +M + G
Sbjct: 484 MILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSG 543
Query: 181 LTPISRCFDLVT 192
+ P + L++
Sbjct: 544 IDPSTSILSLIS 555
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 3/217 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G R +L+ GL G + +M KM + G P+L T+N ++ +CK G
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +++ + + G ++ TY LI + + ++EA +++ + DG NP Y
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G+ A ++K +G P+ Y L++ R G AA + EM E G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRSV 217
+ P + ++ D + D EK QL +S+ +
Sbjct: 404 IKPSKVTYTILIDTF---ARSDNMEKAIQLRLSMEEL 437
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G NP + + L+ G G L A + + +G P L T+N L+ C+ G+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGD 388
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+M + + G TY ILI +++ +++A +L ++ E G P Y+
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSV 448
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G +GQ ++A F + K PN +Y T+I + G A L EM E
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508
Query: 181 LTP 183
L P
Sbjct: 509 LAP 511
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 93/207 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P + + ++ L G + A Q+ ++M ++G ++ T+N+LI +C+ +
Sbjct: 259 MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMK 318
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++ + G ++ TY LI G + +A L +L G +P Y
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G R+G A E++ +G P++ YT LI R +A + M E+G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
L P + ++ G G+ + A ++
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRL 465
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 96/205 (46%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G+ P L+ GL G + A ++V++M++ G PDL T N+L+ +C SG+
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+ + + + G + TY ++ + K+G A LL + E Y+ II G
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ G D+AF F+E+++KG N Y LI GR+ + A L +M + + P
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332
Query: 185 SRCFDLVTDGLKNCGKHDLAEKIEQ 209
F ++ D GK AE++ +
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHK 357
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG + ++L+ G NAG + +++ MIK+ +P++ TF+ LI++ K G+
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E++ + G D TY LI K +D+A +++ +V G +P +
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + DD F ++ ++G + Y TLI G+ A EM
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA----EKIEQLEVSL 214
+ P + ++ DGL + G+ + A EKIE+ ++ L
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 94/213 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P + + LV GL +G A +++KM++ G P+ T+ ++ +CKSG+
Sbjct: 184 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E+ + + D Y I+I + K G +D AF L + + G Y
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G++DD ++ + PN ++ LI + G+ EA EM G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
+ P + + + DG D A ++ L VS
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 4/198 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G + L+QG G L AK++ +M+ + P++ T+ L++ +C +GE
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E +E++ + K D+ Y I+I + A +D+A+ L +L G P Y
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G ++G +A F +++ GH P+ Y LI G ++ + E+ G
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608
Query: 181 L----TPISRCFDLVTDG 194
+ I D+++DG
Sbjct: 609 FSVDASTIKMVIDMLSDG 626
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 2/205 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P L+ G +L+ A QMV+ M+ +G DP++ TFN LI CK+
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +E++ + G AD TY LI + G ++ A L +V P Y
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G G+ + A F +I+ + +Y +I + +A + + G
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAE 205
+ P + ++++ GL C K L+E
Sbjct: 539 VKPGVKTYNIMIGGL--CKKGPLSE 561
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 2/211 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG +P +R ++L+ G A ++ ++ KM +G D T+N+LI+ C+ G+
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E++ + ++ TYKIL+ + G ++A + + + +Y
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + DDA+ F + +KG P Y +I + G EA +M E G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211
P ++++ + G D + ++ +E
Sbjct: 574 HAPDGWTYNILIRA--HLGDGDATKSVKLIE 602
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 88/199 (44%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+++ GL G L++A + N+M +G ++ T+N LI C +G + ++ + K
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134
+V T+ +LI + K G + EA L ++ G P Y +I G + D A
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKA 387
Query: 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194
+ KG PN + LI + R + +M+ G+ + ++ + G
Sbjct: 388 NQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQG 447
Query: 195 LKNCGKHDLAEKIEQLEVS 213
GK ++A+++ Q VS
Sbjct: 448 FCELGKLNVAKELFQEMVS 466
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 92/196 (46%), Gaps = 3/196 (1%)
Query: 23 AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST 82
+G A +++ KM ++ D ++ +I+ +CK G ++ ++ + G ++ T
Sbjct: 241 SGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 300
Query: 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142
Y ILI AG D+ +LL ++++ NP ++ +I + G+ +A E+
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 360
Query: 143 IKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHD 202
+G P+ YT+LI + +A + M G P R F+++ +G C +
Sbjct: 361 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY--CKANR 418
Query: 203 LAEKIEQL-EVSLRSV 217
+ + +E ++SLR V
Sbjct: 419 IDDGLELFRKMSLRGV 434
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%)
Query: 32 MVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91
+ +M +G +L T + +I C+ ++ + KLG + T+ LI +
Sbjct: 110 LCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLC 169
Query: 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151
G + EA L+ +VE GH P ++ G G+ +A ++ G PN
Sbjct: 170 LEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAV 229
Query: 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
Y ++ + + G+ A L +M E + + + ++ DGL G D A
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 282
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 5/209 (2%)
Query: 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
R+ L GL++ + A + MI P + F+ L I K+ + + + + +
Sbjct: 57 RERLRSGLVDIKA-DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQME 115
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
G ++ T I+I + + AF + +++ G+ P ++ +I G G+
Sbjct: 116 LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVS 175
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
+A + GH P+ TL+ G+ EA + +M E G P + + V
Sbjct: 176 EALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVL 235
Query: 193 DGLKNCGKHDLA----EKIEQLEVSLRSV 217
+ + G+ LA K+E+ + L +V
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNIKLDAV 264
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
KG P V+ ++++ GL G L A+ + KM + G PD T+N LI G+
Sbjct: 537 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATK 596
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAF 100
V++ + + G D ST K++I +S G + ++F
Sbjct: 597 SVKLIEELKRCGFSVDASTIKMVIDMLSD-GRLKKSF 632
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 91/200 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P V LV GL N+G A ++ M K+ PD+ TFN+LI+ K G+
Sbjct: 203 MENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGK 262
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E+Y + ++ ++ TY LI G +DEA ++ + + G P Y
Sbjct: 263 FLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTS 322
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + DDA F E+ KG N YTTLI G+ G+ A M G
Sbjct: 323 LINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG 382
Query: 181 LTPISRCFDLVTDGLKNCGK 200
+ P R ++++ L GK
Sbjct: 383 VPPNIRTYNVLLHCLCYNGK 402
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M GF P + L+ G +E A MVN+M++ G PD+ + ++I+++CK+G
Sbjct: 133 MMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH 192
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + + ++ + G DV Y L+ + +G +A LL + + P +
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + G+F DA ++E+ PN YT+LI G EA M G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
P + + +G C K D A KI
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKI 339
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 3/207 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ + P V + L+ + G A+++ N+MI+ P++ T+ SLI C G
Sbjct: 238 MTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC 297
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ +M+Y + G DV Y LI K +D+A ++ + + + G Y
Sbjct: 298 VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTT 357
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYL--MEMTE 178
+I+G + G+ + A FS + +G PPN Y L+ G+ +A M+ E
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Query: 179 M-GLTPISRCFDLVTDGLKNCGKHDLA 204
M G+ P ++++ GL GK + A
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKA 444
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P V ++ L G++ A + ++M G PD+ + SL+ +C SG
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + K DV T+ LI A K G +A L + ++ P Y
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G D+A F ++ KG P+ YT+LI + + +A EM++ G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
LT + + + G GK ++A+++ VS
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVS 380
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 70/155 (45%)
Query: 29 AKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88
A + KM+K G +PD+ TF SLI C +E + M + ++G DV Y +I
Sbjct: 126 ASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIID 185
Query: 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148
++ K G ++ A L + G P +Y ++ G G++ DA + + P
Sbjct: 186 SLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKP 245
Query: 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ + LI + G+F++A EM M + P
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP 280
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 3/185 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS KG L+QG G A+++ + M+ +G P++ T+N L+ +C +G+
Sbjct: 343 MSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGK 402
Query: 61 VEFCVEMYYSVCKL---GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL 117
V+ + ++ + K G ++ TY +L+ + G +++A + ++ + +
Sbjct: 403 VKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIIT 462
Query: 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177
Y II+G + G+ +A F + KG PN YTT+I+ R G EA +M
Sbjct: 463 YTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMK 522
Query: 178 EMGLT 182
E G++
Sbjct: 523 EDGVS 527
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%)
Query: 40 GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEA 99
G DL T N L+ C+S + + KLG D+ T+ LI ++EA
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161
Query: 100 FRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITM 159
+++ +VE G P +Y II + G + A F +++ G P+ +YT+L+
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221
Query: 160 CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
GR+ +A + L MT+ + P F+ + D GK AE++
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEEL 269
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 1/195 (0%)
Query: 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
R++L GL + + E A + M++ P + F L+ I K + + + + +
Sbjct: 41 REILRNGLHSLQFNE-ALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
+G D+ T +L+ ++ A L +++ G P + +I G + +
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRME 159
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
+A +++ G P+ +YTT+I + G A + +M G+ P + +
Sbjct: 160 EAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLV 219
Query: 193 DGLKNCGKHDLAEKI 207
+GL N G+ A+ +
Sbjct: 220 NGLCNSGRWRDADSL 234
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ +P ++ + + + AG E + M ++ + PD +++ LI + K+G
Sbjct: 508 MINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF 567
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E++YS+ + G D Y I+I K G +++A++LL + G P Y
Sbjct: 568 ANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGS 627
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + D+A+ F E K K N +Y++LI G+ GR EA L E+ + G
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRSV 217
LTP ++ + D L AE+I + V +S+
Sbjct: 688 LTPNLYTWNSLLDALVK------AEEINEALVCFQSM 718
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 1/204 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G+ P V L++G G ++SA ++++M D D+ +N I++ K G+
Sbjct: 194 MQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGK 253
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ + ++ + G D TY +I + KA +DEA + +L ++ P Y
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNT 313
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G+FD+A+ + KG P+ Y ++T + G+ EA EM +
Sbjct: 314 MIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-D 372
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
P ++++ D L GK D A
Sbjct: 373 AAPNLSTYNILIDMLCRAGKLDTA 396
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KGF P V ++ GL L+ A + + + + ++ ++SLI+ K G
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + + G ++ T+ L+ A+ KA I+EA ++ E P Y
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + +F+ AF F+ E++ +G P+ YTT+I+ + G EA G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 181 LTPISRCFDLVTDGLKN 197
P S C++ + +GL N
Sbjct: 793 GVPDSACYNAMIEGLSN 809
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
+ F P R +L+ GL+ AG+ ++ M +QG D +N +I+ CK G+V
Sbjct: 546 RRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNK 605
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
++ + G V TY +I ++K +DEA+ L +Y+ +I
Sbjct: 606 AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID 665
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
G + G+ D+A+ E+ KG PN + +L+ + EA M E+ TP
Sbjct: 666 GFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTP 725
Query: 184 ISRCFDLVTDGL 195
+ ++ +GL
Sbjct: 726 NQVTYGILINGL 737
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 43/239 (17%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV-EFCV- 65
P + ++L+ L AG L++A ++ + M K G P++ T N +++ +CKS ++ E C
Sbjct: 375 PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAM 434
Query: 66 --EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
EM Y VC D T+ LI + K G +D+A+++ +++ +Y +IK
Sbjct: 435 FEEMDYKVCT----PDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIK 490
Query: 124 GAFRRGQFDDAF-----------------------------------CFFSEIKIKGHPP 148
F G+ +D F EIK + P
Sbjct: 491 NFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVP 550
Query: 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ Y+ LI + G E M E G +R +++V DG CGK + A ++
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ G G ++ A ++ +++++G P+L T+NSL++ + K+ E+ + + S+ +L
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
+ TY ILI + K ++AF + + G P Y +I G + G +A
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAG 782
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
F K G P+ Y +I G R ++A + E GL PI
Sbjct: 783 ALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL-PI 830
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS GF P V +V G + A L +V M K P + +LI
Sbjct: 124 MSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNH 183
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + ++ + +LG V + LI +K G +D A LL + + LY
Sbjct: 184 SDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNV 243
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
I + G+ D A+ FF EI+ G P+ YT++I + + R EA + +
Sbjct: 244 CIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNR 303
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
P + ++ + G + GK D A
Sbjct: 304 RVPCTYAYNTMIMGYGSAGKFDEA 327
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 81/202 (40%)
Query: 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCV 65
F P L+ + + + +M + G +P + F +LI K G V+ +
Sbjct: 164 FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSAL 223
Query: 66 EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125
+ + AD+ Y + I + K G +D A++ H + +G P Y +I
Sbjct: 224 SLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVL 283
Query: 126 FRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS 185
+ + D+A F ++ P Y T+I G G+F EA + L G P
Sbjct: 284 CKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSV 343
Query: 186 RCFDLVTDGLKNCGKHDLAEKI 207
++ + L+ GK D A K+
Sbjct: 344 IAYNCILTCLRKMGKVDEALKV 365
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
KG P V + ++ L G ++ A ++ +M K+ + P+L T+N LI+ +C++G+++
Sbjct: 337 KGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDT 395
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
E+ S+ K G +V T I++ + K+ +DEA + + P + +I
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLID 455
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
G + G+ DDA+ + ++ N VYT+LI GR + +M +P
Sbjct: 456 GLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515
Query: 184 ISRCFDLVTDGLKNCGK 200
+ + D + G+
Sbjct: 516 DLQLLNTYMDCMFKAGE 532
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
KG P + + L+ L+ A + A M + P+ T+ LI +CK +
Sbjct: 686 KGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNK 745
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
+ + K G +Y +I ++KAG I EA L +G P + Y +I+
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIE 805
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170
G + DAF F E + +G P + L+ + +AA
Sbjct: 806 GLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAA 852
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 2/186 (1%)
Query: 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85
++ Q++ +M G P + T ++ K+ ++ ++ + K S Y
Sbjct: 114 FDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTT 173
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
LI A S D L + E G+ P L+ +I+G + G+ D A E+K
Sbjct: 174 LIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSS 233
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
+ +Y I G+ G+ A + E+ GL P + + L C + L E
Sbjct: 234 LDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVL--CKANRLDE 291
Query: 206 KIEQLE 211
+E E
Sbjct: 292 AVEMFE 297
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 93/207 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + P V ++ G G + A ++ ++M +G +PD TF LI CK+G
Sbjct: 377 MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGH 436
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ ++ + + G +V TY LI + K G +D A LLH + + G P Y
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
I+ G + G ++A E + G + YTTL+ + G +A L EM G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
L P F+++ +G G + EK+
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKL 583
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P ++ L L A++ ++MI+QG PD + +LI+ CK G+
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + +Y + DV TY +I + G + EA +L H + G P +
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G DAF + + G PN YTTLI + G A L EM ++G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
L P ++ + +GL G + A K+
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKL 513
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G +P V L+ GL G L+SA +++++M K G P++ T+NS++ +CKSG
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E V++ G AD TY L+ A K+G +D+A +L ++ G P +
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITM-CGRGGRFVEAANYLMEMTEM 179
++ G G +D + + KG PN + +L+ C R A Y +M
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY-KDMCSR 625
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAE 205
G+ P + ++ + G +C ++ E
Sbjct: 626 GVGPDGKTYENLVKG--HCKARNMKE 649
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 5/202 (2%)
Query: 3 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKS-GEV 61
D G +P R D+ Q L++ G L A+++ KM+ G +++ N + + K +
Sbjct: 170 DWGSDP--RVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKT 227
Query: 62 EFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI 121
+ ++ ++G C +V++Y I+I V + G I EA LL + G+ P Y+ +
Sbjct: 228 ATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTV 287
Query: 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181
+ G R G+ D + +K KG PN +Y ++I + R + EA EM G+
Sbjct: 288 VNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347
Query: 182 TPISRCFDLVTDGLKNCGKHDL 203
P + + + DG C + D+
Sbjct: 348 LPDTVVYTTLIDGF--CKRGDI 367
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
KG P L+ G AG+++ A ++ N MI+ G P++ T+ +LI+ +CK G+++
Sbjct: 415 KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
E+ + + K+G ++ TY ++ + K+G I+EA +L+ G N Y ++
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ G+ D A E+ KG P + L+ G + L M G+ P
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594
Query: 184 ISRCFD 189
+ F+
Sbjct: 595 NATTFN 600
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P + ++L+ G G LE ++++N M+ +G P+ TFNSL++ C
Sbjct: 552 MLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNN 611
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +Y +C G D TY+ L+ KA + EA+ L + G + S Y+
Sbjct: 612 LKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSV 671
Query: 121 IIKGAFRRGQFDDA------------------FCFFSEIKIKGHPPNRPV 152
+IKG +R +F +A F FFS+ K KG P+ V
Sbjct: 672 LIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIV 721
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P L+ G G + +A + +M + PD+ T+ ++I C+ G+
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++++ + G D T+ LI KAG + +AFR+ +++++ G +P Y
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G D A E+ G PN Y +++ + G EA + E G
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
L + + + D G+ D A++I
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEI 548
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 35/228 (15%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P + + +V GL +G +E A ++V + G + D T+ +L++ CKSGE
Sbjct: 482 MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 541
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP----FPS 116
++ E+ + G + T+ +L+ GM+++ +LL+ ++ G P F S
Sbjct: 542 MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNS 601
Query: 117 L-------------------------------YAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
L Y ++KG + +A+ F E+K KG
Sbjct: 602 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTD 193
+ Y+ LI + +F+EA +M GL FD +D
Sbjct: 662 FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 709
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 85/190 (44%)
Query: 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYY 69
V ++++ + G ++ A ++ M +G PD+ ++++++ C+ GE++ ++
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305
Query: 70 SVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129
+ + G + Y +I + + + EA ++ G P +Y +I G +RG
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365
Query: 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD 189
A FF E+ + P+ YT +I+ + G VEA EM GL P S F
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 190 LVTDGLKNCG 199
+ +G G
Sbjct: 426 ELINGYCKAG 435
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 91/207 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G+ P + + L+ G + + A +V +M++ G PD TFN+LI + +
Sbjct: 142 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNR 201
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + + G D+ TY I++ + K G ID A LL + + P +Y
Sbjct: 202 ASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNT 261
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II +DA F+E+ KG PN Y +LI GR+ +A+ L +M E
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P F + D GK AEK+
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKL 348
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 94/197 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G L+ G A ++A+ + +M+ G PD+ T++ L++ +C +G+
Sbjct: 422 MSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK 481
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VE + ++ + + D+ TY I+I + KAG +++ + L +L G P Y
Sbjct: 482 VETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 541
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G R+G ++A F E+K +G P+ Y TLI R G +A + EM
Sbjct: 542 MMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCR 601
Query: 181 LTPISRCFDLVTDGLKN 197
+ LVT+ L +
Sbjct: 602 FVGDASTIGLVTNMLHD 618
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 94/204 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P V + L++ L N G A ++++ MI++ +P++ TF++LI+ K G+
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++Y + K D+ TY LI +DEA + ++ P Y
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + + D+ F E+ +G N YTTLI + A +M G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P + ++ DGL N GK + A
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETA 485
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 4/202 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ NP V L+ + G L A+++ ++MIK+ DPD+ T++SLI C
Sbjct: 317 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 376
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ M+ + +V TY LI KA +DE L + + G Y
Sbjct: 377 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT-MCGRGGRFVEAANYLME-MTE 178
+I G F+ + D+A F ++ G P+ Y+ L+ +C G VE A + E +
Sbjct: 437 LIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK--VETALVVFEYLQR 494
Query: 179 MGLTPISRCFDLVTDGLKNCGK 200
+ P ++++ +G+ GK
Sbjct: 495 SKMEPDIYTYNIMIEGMCKAGK 516
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 36/247 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P + L+ G L+ AK M MI + P++ T+N+LI+ CK+
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411
Query: 61 VEFCVEMYYSVCKLGSCA-----------------------------------DVSTYKI 85
V+ +E++ + + G D+ TY I
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
L+ + G ++ A + L P Y +I+G + G+ +D + F + +KG
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD-LVTDGLKNCGKHDLA 204
PN YTT+++ R G EA EM E G P S ++ L+ L++ K A
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA 591
Query: 205 EKIEQLE 211
E I ++
Sbjct: 592 ELIREMR 598
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 88/213 (41%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M P V + ++ L N + A + +M +G P++ T+NSLI +C G
Sbjct: 247 MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 306
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + +V T+ LI A K G + EA +L +++ +P Y+
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 366
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + D+A F + K PN Y TLI + R E EM++ G
Sbjct: 367 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
L + + + G + D A+ + + VS
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P + ++V GL G ++ A ++ KM + +P + +N++I+ +C
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKN 271
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + ++ + G +V TY LI + G +A RLL +++E NP ++
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158
+I + G+ +A + E+ + P+ Y++LI
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 4/193 (2%)
Query: 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV 80
LN L+ A + M+K P + F+ L+ I K + + + + + LG ++
Sbjct: 57 LNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNL 116
Query: 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSE 140
TY ILI + + A +L +++ G+ P ++ G + DA +
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176
Query: 141 IKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGK 200
+ G+ P+ + TLI R R EA + M G P + +V +GL G
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236
Query: 201 HDLA----EKIEQ 209
DLA +K+EQ
Sbjct: 237 IDLALSLLKKMEQ 249
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 4/165 (2%)
Query: 35 KMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94
+M G +L T++ LI C+ ++ + + + KLG D+ T L+
Sbjct: 106 QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGN 165
Query: 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154
I +A L+ +VE G+ P + +I G FR + +A + +KG P+ Y
Sbjct: 166 RISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225
Query: 155 TLIT-MCGRGGRFVEAANYLMEMTEMG-LTPISRCFDLVTDGLKN 197
++ +C RG ++ A L++ E G + P ++ + D L N
Sbjct: 226 IVVNGLCKRGD--IDLALSLLKKMEQGKIEPGVVIYNTIIDALCN 268
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 100/212 (47%), Gaps = 2/212 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P + + LV GL G + A ++++M++ G P+ T+ ++ +CKSG+
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E+ + + D Y I+I + K G +D AF L + + G Y
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNT 303
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G++DD ++ + PN ++ LI + G+ EA L EM + G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG 363
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212
+ P + ++ + DG C ++ L E I+ +++
Sbjct: 364 IAPNTITYNSLIDGF--CKENRLEEAIQMVDL 393
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KGF + + L+ G NAG + +++ MIK+ P++ TF+ LI++ K G+
Sbjct: 289 MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK 348
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++ + + G + TY LI K ++EA +++ ++ G +P +
Sbjct: 349 LREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNI 408
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + DD F E+ ++G N Y TL+ + G+ A EM
Sbjct: 409 LINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRR 468
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P + ++ DGL + G+ + A +I
Sbjct: 469 VRPDIVSYKILLDGLCDNGELEKALEI 495
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 2/205 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P + L+ G LE A QMV+ MI +G DPD+ TFN LI CK+
Sbjct: 359 MMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANR 418
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +E++ + G A+ TY L+ ++G ++ A +L +V P Y
Sbjct: 419 IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKI 478
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G G+ + A F +I+ + +Y +I + +A + + G
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKG 538
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAE 205
+ +R ++++ L C K L++
Sbjct: 539 VKLDARAYNIMISEL--CRKDSLSK 561
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 95/201 (47%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+++ GL G L++A + N+M +G D+ T+N+LI C +G + ++ + K
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134
+V T+ +LI + K G + EA +LL +++ G P Y +I G + + ++A
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387
Query: 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194
+ KG P+ + LI + R + EM+ G+ + ++ + G
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447
Query: 195 LKNCGKHDLAEKIEQLEVSLR 215
GK ++A+K+ Q VS R
Sbjct: 448 FCQSGKLEVAKKLFQEMVSRR 468
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 99/214 (46%), Gaps = 1/214 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG +P + ++L+ G A ++ ++ +M +G + T+N+L++ C+SG+
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E +++ + D+ +YKIL+ + G +++A + + + +Y
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI 513
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + DDA+ F + +KG + Y +I+ R +A +MTE G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Query: 181 LTPISRCFD-LVTDGLKNCGKHDLAEKIEQLEVS 213
P ++ L+ L + AE IE+++ S
Sbjct: 574 HAPDELTYNILIRAHLGDDDATTAAELIEEMKSS 607
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 35/242 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG + +++ L A + K++K G +PD FN+L+ +C
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECR 173
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V +E+ + ++G + T L+ + G + +A L+ +VE G P Y P
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233
Query: 121 -----------------------------------IIKGAFRRGQFDDAFCFFSEIKIKG 145
II G + G D+AF F+E++IKG
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
+ Y TLI GR+ + A L +M + ++P F ++ D GK A+
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 206 KI 207
++
Sbjct: 354 QL 355
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 3/218 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + GF P ++ + +G A +++ KM ++ D ++ +I+ +CK G
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ ++ + G AD+ TY LI AG D+ +LL ++++ +P ++
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + G+ +A E+ +G PN Y +LI + R EA + M G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQL-EVSLRSV 217
P F+++ +G C + + + +E E+SLR V
Sbjct: 399 CDPDIMTFNILINGY--CKANRIDDGLELFREMSLRGV 434
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 35/198 (17%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G + LVQG +G LE AK++ +M+ + PD+ ++ L++ +C +GE
Sbjct: 429 MSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGE 488
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLL----------------- 103
+E +E++ + K D+ Y I+I + A +D+A+ L
Sbjct: 489 LEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNI 548
Query: 104 ------------------HNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
+ E+GH P Y +I+ A E+K G
Sbjct: 549 MISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608
Query: 146 HPPNRPVYTTLITMCGRG 163
P + +I M G
Sbjct: 609 FPADVSTVKMVINMLSSG 626
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 75/197 (38%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P V + L + E + +M +G + T + +I C+ ++ +
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ KLG D + L+ + + EA L+ +VE GH P ++ G
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
G+ DA + G PN Y ++ + + G+ A L +M E + +
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 188 FDLVTDGLKNCGKHDLA 204
+ ++ DGL G D A
Sbjct: 266 YSIIIDGLCKDGSLDNA 282
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 93/204 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+ KGF + + L+ L+ G++E A + ++ + G ++ T N ++ +CK G+
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E V + G D+ TY LI A S G+++EAF L++ + G +P Y
Sbjct: 251 MEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNT 310
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G+++ A F+E+ G P+ Y +L+ + G VE +M
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P CF + G D A
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKA 394
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 2/211 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KGF+P V + ++ GL G E AK++ +M++ G PD T+ SL+ CK G+
Sbjct: 296 MPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 355
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V +++ + D+ + ++ +++G +D+A +++ E G P +Y
Sbjct: 356 VVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTI 415
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+G R+G A +E+ +G + Y T++ + EA EMTE
Sbjct: 416 LIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA 475
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211
L P S ++ DG +C +L +E +
Sbjct: 476 LFPDSYTLTILIDG--HCKLGNLQNAMELFQ 504
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 3/203 (1%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
DLL++ + A L A + + +G ++ N+LI ++ + G VE +Y + +
Sbjct: 169 DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISR 228
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G +V T I++ A+ K G +++ L + E G P Y +I +G ++
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTD 193
AF + + KG P Y T+I + G++ A EM GL+P S + +
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL- 347
Query: 194 GLKNCGKHDLAEKIEQLEVSLRS 216
++ C K D+ E E++ +RS
Sbjct: 348 -MEACKKGDVVET-EKVFSDMRS 368
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 91/194 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+S G V +++V L G +E ++++ ++G PD+ T+N+LI G
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E E+ ++ G V TY +I + K G + A + ++ G +P + Y
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ A ++G + FS+++ + P+ +++++++ R G +A Y + E G
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
Query: 181 LTPISRCFDLVTDG 194
L P + + ++ G
Sbjct: 406 LIPDNVIYTILIQG 419
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 8/219 (3%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+++ P +L+ G G L++A ++ KM ++ D+ T+N+L++ K G+
Sbjct: 471 MTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ E++ + +Y IL+ A+ G + EAFR+ ++ P +
Sbjct: 531 IDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNS 590
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM- 179
+IKG R G D F ++ +G P+ Y TLI R +A + +M E
Sbjct: 591 MIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQ 650
Query: 180 -GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRSV 217
GL P ++ + G C ++ + E EV LR +
Sbjct: 651 GGLVPDVFTYNSILHGF--CRQNQMKEA----EVVLRKM 683
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G V + ++ GL L A ++ N+M ++ PD T LI+ CK G
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGN 495
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +E++ + + DV TY L+ K G ID A + ++V P P Y+
Sbjct: 496 LQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSI 555
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ +G +AF + E+ K P + ++I R G + ++L +M G
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 181 LTP 183
P
Sbjct: 616 FVP 618
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 2/183 (1%)
Query: 23 AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST 82
+G L+ A N + + G PD + LI+ C+ G + + + + + G DV T
Sbjct: 388 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVT 447
Query: 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142
Y ++ + K M+ EA +L + + E P +I G + G +A F ++K
Sbjct: 448 YNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMK 507
Query: 143 IKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHD 202
K + Y TL+ G+ G A +M + P + ++ + L C K
Sbjct: 508 EKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL--CSKGH 565
Query: 203 LAE 205
LAE
Sbjct: 566 LAE 568
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 2/185 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M K P +LV L + G+L A ++ ++MI + P + NS+I+ C+SG
Sbjct: 541 MVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN 600
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL--Y 118
+ G D +Y LI + + +AF L+ + E+ P + Y
Sbjct: 601 ASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTY 660
Query: 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178
I+ G R+ Q +A ++ +G P+R YT +I EA EM +
Sbjct: 661 NSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQ 720
Query: 179 MGLTP 183
G +P
Sbjct: 721 RGFSP 725
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 17/209 (8%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE----VEFCVEMYYSV 71
++ L+ +G L A+ + +MI++ LE NSL T G + + Y
Sbjct: 119 MIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQA 178
Query: 72 CKL-------------GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY 118
KL G + LI ++ + G ++ A+ + + G
Sbjct: 179 RKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTL 238
Query: 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178
++ + G+ + F S+++ KG P+ Y TLI+ G EA + M
Sbjct: 239 NIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG 298
Query: 179 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
G +P ++ V +GL GK++ A+++
Sbjct: 299 KGFSPGVYTYNTVINGLCKHGKYERAKEV 327
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
+V G AG ++ A+ + ++MI++G P + T+N++I+ +CK VE V M+ + + G
Sbjct: 271 VVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRG 330
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
+V+TY +LI + AG L+ + +G P Y +I+ + + A
Sbjct: 331 YEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKAL 390
Query: 136 CFFSEIKIKGHPPNRPVYTTLIT---MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
F ++ PN Y LI+ + R V A L+EM E G P F+ V
Sbjct: 391 GLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVL 450
Query: 193 DGLKNCGKHDLAEKIEQLE 211
+GL G A++I +L+
Sbjct: 451 NGLLLTGNQAFAKEILRLQ 469
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 3/194 (1%)
Query: 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS 81
+AG + A ++ M + G DL +FN++++ +CKS VE E++ ++ S D
Sbjct: 138 SAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSV-DTV 196
Query: 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI 141
TY +++ +A +L +VE G NP + Y ++KG FR GQ A+ FF E+
Sbjct: 197 TYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEM 256
Query: 142 KIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKH 201
K + + YTT++ G G A N EM G+ P ++ + L C K
Sbjct: 257 KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVL--CKKD 314
Query: 202 DLAEKIEQLEVSLR 215
++ + E +R
Sbjct: 315 NVENAVVMFEEMVR 328
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 80/172 (46%)
Query: 29 AKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88
A +++ +M+++G +P+L T+N++++ ++G++ E + + K DV TY ++
Sbjct: 214 ALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVH 273
Query: 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148
AG I A + ++ +G P + Y +I+ ++ ++A F E+ +G+ P
Sbjct: 274 GFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEP 333
Query: 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGK 200
N Y LI G F + M G P + ++++ C +
Sbjct: 334 NVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSE 385
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P + L++ G +E+A++ VNKM +G P +ET+N LI + E
Sbjct: 415 MEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYE 474
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ C ++ + G+ +V +Y LI + K + EA + ++ + G +P +Y
Sbjct: 475 FDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNM 534
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G +G+ +DAF F E+ KG N Y TLI G+ EA + L+E++ G
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594
Query: 181 LTP 183
L P
Sbjct: 595 LKP 597
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 1/214 (0%)
Query: 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63
KG P + ++ G G L A+ + M KQG PD +N LI C+ GE+E
Sbjct: 383 KGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMEN 442
Query: 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123
+ + G V TY ILI + D+ F +L + ++G P Y +I
Sbjct: 443 AEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLIN 502
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ + +A +++ +G P +Y LI C G+ +A + EM + G+
Sbjct: 503 CLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIEL 562
Query: 184 ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRSV 217
++ + DGL GK AE + LE+S + +
Sbjct: 563 NLVTYNTLIDGLSMTGKLSEAEDL-LLEISRKGL 595
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 8/198 (4%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D G P V L+ L L A+ + M +G P + +N LI+ C G+
Sbjct: 485 MEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGK 544
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + K G ++ TY LI +S G + EA LL + G P Y
Sbjct: 545 IEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNS 604
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G + E+K G P Y LI++C + G +E L EM
Sbjct: 605 LISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG--IELTERL--FGEMS 660
Query: 181 LTPISRCFDLVTDGLKNC 198
L P LV +G+ +C
Sbjct: 661 LKPDL----LVYNGVLHC 674
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M P + + L++GL AG +E A+ ++ +M G PD TF+ L + + +
Sbjct: 275 MKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEK 334
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E + +Y + G + T IL+ A+ K G I++A +L + G P +Y
Sbjct: 335 AEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNT 394
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G R+G A ++ +G P+ Y LI G A + +M G
Sbjct: 395 MIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKG 454
Query: 181 LTPISRCFDLVTDG 194
++P ++++ G
Sbjct: 455 VSPSVETYNILIGG 468
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 35/235 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D GF P +L G + E+A + + G + T + L+ +CK G+
Sbjct: 310 MKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGK 369
Query: 61 VEFCVEMY--------------YSVCKLGSC--ADVSTYKILIPAVSKAGM--------- 95
+E E+ Y+ G C D+ ++ I A+ K GM
Sbjct: 370 IEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNC 429
Query: 96 ----------IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
++ A + ++ + G +P Y +I G R+ +FD F E++ G
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGK 200
PN Y TLI +G + +EA +M + G++P R ++++ DG + GK
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGK 544
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 82/199 (41%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P + + L+ G AG E + ++ +M +P L TFN+L++ + K+G VE +
Sbjct: 247 PSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENV 306
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ LG D T+ IL S + A + V+ G + ++ +
Sbjct: 307 LKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCK 366
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
G+ + A KG PN +Y T+I R G V A + M + G+ P
Sbjct: 367 EGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLA 426
Query: 188 FDLVTDGLKNCGKHDLAEK 206
++ + G+ + AEK
Sbjct: 427 YNCLIRRFCELGEMENAEK 445
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 5/207 (2%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P V ++L+ GL + A+Q+ ++M+ + P L T+N+LI+ CK+G E ++
Sbjct: 212 PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKV 271
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ + T+ L+ + KAGM+++A +L + + G P ++ + G
Sbjct: 272 RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSS 331
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
+ + A + G N + L+ + G+ +A L GL P
Sbjct: 332 NEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVI 391
Query: 188 FDLVTDGLKNCGKHDLA---EKIEQLE 211
++ + DG C K DL KIE +E
Sbjct: 392 YNTMIDGY--CRKGDLVGARMKIEAME 416
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%)
Query: 31 QMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90
++ N+M P + +N LI+ +CK + +++ + + TY LI
Sbjct: 200 ELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGY 259
Query: 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR 150
KAG +++F++ + D P + ++KG F+ G +DA E+K G P+
Sbjct: 260 CKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDA 319
Query: 151 PVYTTL 156
++ L
Sbjct: 320 FTFSIL 325
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 4/177 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P ++ LL+ G +E +++ +M PDL +N ++ G+
Sbjct: 625 MKRSGIKPTLKTYHLLISLCTKEG-IELTERLFGEM---SLKPDLLVYNGVLHCYAVHGD 680
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + + + D +TY LI K G + E L+ + P Y
Sbjct: 681 MEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNI 740
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177
I+KG + A+ ++ E++ KG + + L++ R EA + EM
Sbjct: 741 IVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMN 797
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 36/226 (15%)
Query: 15 LLVQGLLN-AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
LL+ LLN + + A + + +G P ++ L++ + K+ + + ++ ++ +
Sbjct: 113 LLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 172
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
Y I A K + + L + + D P +Y +I G + + +D
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND 232
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLIT-MCGRG----------------------------- 163
A F E+ + P+ Y TLI C G
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLK 292
Query: 164 -----GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
G +A N L EM ++G P + F ++ DG + K + A
Sbjct: 293 GLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAA 338
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 1/200 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G +P + + L++G LN ++ ++V+ M + G PD+ TF++L+ G+
Sbjct: 557 MKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGD 616
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ C E+Y + + G D+ + IL ++AG ++A ++L+ + + G P +Y
Sbjct: 617 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQ 676
Query: 121 IIKGAFRRGQFDDAFCFFSEI-KIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
II G G+ A + ++ I G PN Y TLI G + +A L +M
Sbjct: 677 IISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGK 736
Query: 180 GLTPISRCFDLVTDGLKNCG 199
+ P + L+ DG K+ G
Sbjct: 737 NVVPTRKTMQLIADGWKSIG 756
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 1/199 (0%)
Query: 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYY 69
VR R L+ GL+ G + A + N +I++G P L T+ +L+ + + + +
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLIS 378
Query: 70 SVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129
V K G D + +I A S++G +D+A ++ + E G P S + +IKG + G
Sbjct: 379 KVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438
Query: 130 QFDDAFCFFS-EIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCF 188
+ +++ ++ + PN L+ + EA N + +M G+ P F
Sbjct: 439 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTF 498
Query: 189 DLVTDGLKNCGKHDLAEKI 207
+ + G AE +
Sbjct: 499 NTLAKAYARIGSTCTAEDM 517
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 9/212 (4%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG- 59
+ D+ P R ++LVQ N +E A +V KM G PD+ TFN+L + + G
Sbjct: 451 LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGS 510
Query: 60 ----EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP 115
E M ++ K +V T ++ + G ++EA R + + E G +P
Sbjct: 511 TCTAEDMIIPRMLHNKVK----PNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNL 566
Query: 116 SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLME 175
++ +IKG D ++ G P+ ++TL+ G +
Sbjct: 567 FVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTD 626
Query: 176 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
M E G+ P F ++ G G+ + AE+I
Sbjct: 627 MLEGGIDPDIHAFSILAKGYARAGEPEKAEQI 658
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 71 VCKLGS-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129
+C G+ C DV + L+ + + G EA + + L+E+GH P Y ++ R+
Sbjct: 309 ICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQK 368
Query: 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD 189
F S+++ G P+ ++ +I G +A +M E G P + F+
Sbjct: 369 HFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFN 428
Query: 190 LVTDGLKNCGKHDLAEKIEQLEVSLR 215
+ G GK L E L++ LR
Sbjct: 429 TLIKGYGKIGK--LEESSRLLDMMLR 452
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 2/204 (0%)
Query: 3 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVE 62
++G P + LV L + S +++K+ K G PD FN++I +SG ++
Sbjct: 347 EEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLD 406
Query: 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-NPFPSLYAPI 121
++++ + + G ST+ LI K G ++E+ RLL ++ D P +
Sbjct: 407 QAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNIL 466
Query: 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLM-EMTEMG 180
++ + + ++A+ +++ G P+ + TL R G A + ++ M
Sbjct: 467 VQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNK 526
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P R + +G GK + A
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKMEEA 550
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 84.0 bits (206), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G P ++LV G AG + +A+++ KMI G PD+ TF SLI+ C+ G+V
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQG 366
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
++ + G + TY ILI A+ + +A LL L P P +Y P+I G
Sbjct: 367 FRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDG 426
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ G+ ++A E++ K P++ +T LI GR EA + +M +G +P
Sbjct: 427 FCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 37/235 (15%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
++L++GL G E A +++ M G +PD+ T+N+LI+ CKS E+ EM+ V
Sbjct: 210 NILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS 269
Query: 74 LGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP------------------- 113
C+ DV TY +I KAG + EA LL +++ G P
Sbjct: 270 GSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEML 329
Query: 114 --------------FPSL--YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157
FP + + +I G R GQ F + E+ +G PN Y+ LI
Sbjct: 330 TAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILI 389
Query: 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI-EQLE 211
R ++A L ++ + P ++ V DG GK + A I E++E
Sbjct: 390 NALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEME 444
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 3/215 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G +P R LV G L A ++ + + + NSL+ T+ K
Sbjct: 129 MKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFE--VEGCCMVVNSLLNTLVKLDR 186
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VE ++++ + SC D T+ ILI + G ++A LL + G P Y
Sbjct: 187 VEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNT 246
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGH-PPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I+G + + + A F ++K P+ YT++I+ + G+ EA++ L +M +
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214
G+ P + F+++ DG G+ AE+I +S
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF 341
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
++ G AG + A +V +M K+ PD TF LI C G + V +++ + +G
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRL 102
D T L+ + KAGM EA+ L
Sbjct: 483 CSPDKITVSSLLSCLLKAGMAKEAYHL 509
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M GF+P + ++L+ L +A ++N M + G +P + F +LI+ + ++G+
Sbjct: 283 MVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGK 342
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E C K+G DV Y ++I G +++A + + E G P Y
Sbjct: 343 LEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNS 402
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I+G G+F +A E++ +G PN VY+TL+ G+ +EA + +M E G
Sbjct: 403 MIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + GF P V ++++ G + +++++M+K G PDL T+N L+ + +
Sbjct: 248 MLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNK 307
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + ++G V + LI +S+AG ++ + V+ G P Y
Sbjct: 308 PLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTV 367
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G+ + A F E+ KG PN Y ++I G+F EA L EM G
Sbjct: 368 MITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRG 427
Query: 181 LTPISRCFDLVTDGLKNCGK 200
P + + + LKN GK
Sbjct: 428 CNPNFVVYSTLVNNLKNAGK 447
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P V L+ GL AG LE+ K +++ +K G PD+ + +I GE
Sbjct: 318 MREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGE 377
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E EM+ + + G +V TY +I AG EA LL + G NP +Y+
Sbjct: 378 LEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYST 437
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGH 146
++ G+ +A ++ KGH
Sbjct: 438 LVNNLKNAGKVLEAHEVVKDMVEKGH 463
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 2/202 (0%)
Query: 1 MSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKS 58
+ K FN P + ++ LL + + +M++ G PD+ T+N ++ +
Sbjct: 211 IKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRL 270
Query: 59 GEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY 118
G+ + + + K G D+ TY IL+ ++ A LL+++ E G P +
Sbjct: 271 GKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHF 330
Query: 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178
+I G R G+ + F E G P+ YT +IT GG +A EMTE
Sbjct: 331 TTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTE 390
Query: 179 MGLTPISRCFDLVTDGLKNCGK 200
G P ++ + G GK
Sbjct: 391 KGQLPNVFTYNSMIRGFCMAGK 412
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 6/189 (3%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
LL++ G ++ +++++MIK G TFN LI T ++G VE +
Sbjct: 157 LLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTF 216
Query: 75 GSCADVSTYKILIPA---VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131
+Y ++ + V + +ID + ++EDG P Y ++ FR G+
Sbjct: 217 NYRPYKHSYNAILHSLLGVKQYKLIDWVYE---QMLEDGFTPDVLTYNIVMFANFRLGKT 273
Query: 132 DDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLV 191
D + E+ G P+ Y L+ G + + A N L M E+G+ P F +
Sbjct: 274 DRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTL 333
Query: 192 TDGLKNCGK 200
DGL GK
Sbjct: 334 IDGLSRAGK 342
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 5/183 (2%)
Query: 29 AKQMVNKMIKQGS---DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85
A+ +V + IK + P ++N+++ ++ + + +Y + + G DV TY I
Sbjct: 203 ARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNI 262
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
++ A + G D +RLL +V+DG +P Y ++ + A + ++ G
Sbjct: 263 VMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVG 322
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLM-EMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
P +TTLI R G+ +EA Y M E ++G TP C+ ++ G + G+ + A
Sbjct: 323 VEPGVIHFTTLIDGLSRAGK-LEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKA 381
Query: 205 EKI 207
E++
Sbjct: 382 EEM 384
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 35/239 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ P V + L+ G +G +SA ++++ M +G PD T+ S+I+++CKS
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAF-------------------R 101
VE +++ S+ + G +V Y LI KAG +DEA
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572
Query: 102 LLHNLVEDGH----------------NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
L+H L DG P S +I + G FD A+ F ++ G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
P+ YTT I R GR ++A + + +M E G++P + + G + G+ + A
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFA 691
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+ KG NP V L+ G AG ++ A M+ KM+ + P+ TFN+LI +C G+
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + K+G VST ILI + K G D A+ ++ G P Y
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
I+ R G+ DA ++++ G P+ Y++LI G G+ A + L M + G
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
Query: 181 LTPISRCF 188
P F
Sbjct: 703 CEPSQHTF 710
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 1/183 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P R + L++G + + A ++NKM+++ PD+ T+NSLI+ C+SG
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + G D TY +I ++ K+ ++EA L +L + G NP +Y
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G+ D+A ++ K PN + LI G+ EA +M ++G
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597
Query: 181 LTP 183
L P
Sbjct: 598 LQP 600
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 1/214 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P V + L+ G G +E A +V M + P+ T+N LI+ CKS
Sbjct: 384 MLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN- 442
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + + + + DV TY LI ++G D A+RLL + + G P Y
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + + ++A F ++ KG PN +YT LI + G+ EA L +M
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214
P S F+ + GL GK A +E+ V +
Sbjct: 563 CLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI 596
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 34/239 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D P VR +L++ L + A +V +M + G P++ T+ LI+++C +
Sbjct: 314 MKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCK 373
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR------------------- 101
E E+ + + G +V TY LI K GMI++A
Sbjct: 374 FEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNE 433
Query: 102 ---------------LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH 146
+L+ ++E P Y +I G R G FD A+ S + +G
Sbjct: 434 LIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL 493
Query: 147 PPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
P++ YT++I + R EA + + + G+ P + + DG GK D A
Sbjct: 494 VPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P + + +V G G +E A Q V+K+++ G DPD T+ SLI C+ +++ ++
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ + G + Y LI + A IDEA L + +D P Y +IK
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
+ +A E++ G PN YT LI +F +A L +M E GL P
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395
Query: 188 FDLVTDG 194
++ + +G
Sbjct: 396 YNALING 402
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 2/183 (1%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
+ L+ L G ++ KQ+ +M++ P++ T+N ++ CK G VE + + +
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE 246
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G D TY LI + +D AF++ + + G Y +I G + D+
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLI-TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
A F ++K P YT LI ++CG R EA N + EM E G+ P + ++
Sbjct: 307 AMDLFVKMKDDECFPTVRTYTVLIKSLCG-SERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 193 DGL 195
D L
Sbjct: 366 DSL 368
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 107
+N+L+ ++ + G V+ ++Y + + C ++ TY ++ K G ++EA + + +V
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 108 EDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167
E G +P Y +I G +R D AF F+E+ +KG N YT LI R
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
EA + ++M + P R + ++ L CG +E +
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSL--CGSERKSEAL 343
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ GL G L+ A + KM+K G P + T LI + K G+ + + + G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
+ D TY I + G + +A ++ + E+G +P Y+ +IKG GQ + AF
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 136 CFFSEIKIKGHPPNRPVYTTLIT----------------MCGRGG--RFVEAANYLMEMT 177
++ G P++ + +LI +C F L +M
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV 752
Query: 178 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
E +TP ++ ++ + G+ G +AEK+
Sbjct: 753 EHSVTPNAKSYEKLILGICEVGNLRVAEKV 782
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 1/195 (0%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ GL A ++ A + KM P + T+ LI+++C S + + + + G
Sbjct: 294 LIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
++ TY +LI ++ ++A LL ++E G P Y +I G +RG +DA
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAV 413
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
++ + PN Y LI + +A L +M E + P ++ + DG
Sbjct: 414 DVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVVTYNSLIDGQ 472
Query: 196 KNCGKHDLAEKIEQL 210
G D A ++ L
Sbjct: 473 CRSGNFDSAYRLLSL 487
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 26/226 (11%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P +Q G L A+ M+ KM + G PDL T++SLI+ G+
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIP------------------AVSKAGMIDEAFRL 102
F ++ + G T+ LI A+S D L
Sbjct: 688 TNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVEL 747
Query: 103 LHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI-KIKGHPPNRPVYTTLITMCG 161
L +VE P Y +I G G A F + + +G P+ V+ L++ C
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807
Query: 162 RGGRFVEAANYLMEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLAEK 206
+ + EAA + +M +G P + C L+ CG + EK
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLI------CGLYKKGEK 847
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 29 AKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88
A ++V+ MI G P LE+ LI + K GE E ++ ++ + G D +KI+I
Sbjct: 815 AAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIID 874
Query: 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPS-LYAPIIKG 124
V K G++ EAF L N++E F S Y+ +I+G
Sbjct: 875 GVGKQGLV-EAFYELFNVMEKNGCKFSSQTYSLLIEG 910
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QGSDPDLETFNSLIETICKSG 59
M + P + + L+ G+ G L A+++ + M + +G P FN+L+ CK
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810
Query: 60 EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
+ ++ + +G + + K+LI + K G + + NL++ G+ +
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWK 870
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157
II G ++G + + F+ ++ G + Y+ LI
Sbjct: 871 IIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%)
Query: 27 ESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86
+ A +++N+M+ G P + T+NSLI + G ++ +E+ + + G+ DV TY L
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTL 390
Query: 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH 146
+ +AG ++ A + + G P + IK RG+F + F EI + G
Sbjct: 391 LSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGL 450
Query: 147 PPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
P+ + TL+ + G+ G E + EM G P F+ + CG + A
Sbjct: 451 SPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 92/203 (45%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
GF+P + + L+ G L+ A ++ N+M ++G+ PD+ T+ +L+ ++G+VE
Sbjct: 344 GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+ ++ + G ++ T+ I G E ++ + G +P + ++
Sbjct: 404 MSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAV 463
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ G + F E+K G P R + TLI+ R G F +A M + G+TP
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPD 523
Query: 185 SRCFDLVTDGLKNCGKHDLAEKI 207
++ V L G + +EK+
Sbjct: 524 LSTYNTVLAALARGGMWEQSEKV 546
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 5/192 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P + L+ + A Q+ +M G D T+N+L++ KS
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHR 329
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +++ + G + TY LI A ++ GM+DEA L + + E G P Y
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G R G+ + A F E++ G PN + I M G G+F E E+ G
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG 449
Query: 181 LTPISRCFDLVT 192
L+P D+VT
Sbjct: 450 LSP-----DIVT 456
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 6/222 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M++KG P V L+ G AG +ESA + +M G P++ TFN+ I+ G+
Sbjct: 375 MAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGK 434
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++++ + G D+ T+ L+ + GM E + + G P +
Sbjct: 435 FTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT 494
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I R G F+ A + + G P+ Y T++ RGG + ++ L EM +
Sbjct: 495 LISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR 554
Query: 181 LTPISRCFDLVTDGLKNCGK-----HDLAEKIEQLEVSLRSV 217
P + + N GK H LAE++ + R+V
Sbjct: 555 CKPNELTYCSLLHAYAN-GKEIGLMHSLAEEVYSGVIEPRAV 595
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 2/177 (1%)
Query: 32 MVNKMIKQGSDPDLETFNSLIETICKSGEV-EFCVEMYYSVCKLGSCADVSTYKILIPAV 90
+V KM G PD T+N+LI T CK G + + +++ + G D TY L+
Sbjct: 266 LVEKMKSDGIAPDAYTYNTLI-TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY 324
Query: 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR 150
K+ EA ++L+ +V +G +P Y +I R G D+A +++ KG P+
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384
Query: 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
YTTL++ R G+ A + EM G P F+ N GK KI
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKI 441
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 2/180 (1%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G +P + + L+ G + +M + G P+ ETFN+LI + G E
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQA 508
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-NPFPSLYAPIIK 123
+ +Y + G D+STY ++ A+++ GM +++ ++L + EDG P Y ++
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLLH 567
Query: 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+ E+ P + TL+ +C + EA E+ E G +P
Sbjct: 568 AYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSP 627
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 1/170 (0%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+++ L G + SA M N + + G D+ ++ SLI SG V ++ + +
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 75 GSCADVSTYKILIPAVSKAGM-IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G + TY +++ K G ++ L+ + DG P Y +I R +
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
A F E+K G ++ Y L+ + G+ R EA L EM G +P
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSP 347
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 73/149 (48%), Gaps = 1/149 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++GF P + + L+ + +++++ +++ +G PD+ ++N++I C++
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTR 714
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++ + G DV TY I + + M +EA ++ +++ G P + Y
Sbjct: 715 MRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNS 774
Query: 121 IIKGAFRRGQFDDAFCFFSEIK-IKGHPP 148
I+ G + + D+A F +++ + H P
Sbjct: 775 IVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 76/180 (42%)
Query: 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85
L A++ +++ ++G PD+ T NS++ + V + + + G ++TY
Sbjct: 610 LPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNS 669
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
L+ S++ ++ +L ++ G P Y +I R + DA FSE++ G
Sbjct: 670 LMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSG 729
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
P+ Y T I F EA + M + G P ++ + DG + D A+
Sbjct: 730 IVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 116 SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLME 175
S+ A II + G+ A F+ ++ G + YT+LI+ GR+ EA N +
Sbjct: 174 SVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKK 233
Query: 176 MTEMGLTPISRCFDLVTDGLKNCG 199
M E G P ++++ + G
Sbjct: 234 MEEDGCKPTLITYNVILNVFGKMG 257
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P V + L+ G + +E ++ +M QG D T+N+LI C++G+
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 374
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +++ + G D+ TY IL+ + G I++A ++ +L + + Y
Sbjct: 375 LNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNI 434
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II+G R + +A+C F + KG P+ Y T+I+ R G EA M E G
Sbjct: 435 IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494
Query: 181 LTPISRCFD 189
P R +D
Sbjct: 495 FMPSERIYD 503
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG + L+ GL N+G A +++ M+K+ DP++ F +LI+T K G
Sbjct: 210 MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +Y + + +V TY LI G + +A + +V G P Y
Sbjct: 270 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 329
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + +D F E+ +G + Y TLI + G+ A M + G
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 389
Query: 181 LTPISRCFDLVTDGLKNCGK 200
++P ++++ D L N GK
Sbjct: 390 VSPDIVTYNILLDCLCNNGK 409
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 35/242 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M GF P + L+ G + A +V+ M G P++ +N++I +CK+ +
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP----FPS 116
+ +E++Y + K G AD TY LI +S +G +A RLL ++V+ +P F +
Sbjct: 200 LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259
Query: 117 L-------------------------------YAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
L Y +I G G DA F + KG
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
P+ Y TLIT + R + EMT GL + ++ + G GK ++A+
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379
Query: 206 KI 207
K+
Sbjct: 380 KV 381
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 4/197 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P V L+ + G L A+ + +MI++ P++ T+NSLI C G
Sbjct: 245 MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 304
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ M+ + G DV TY LI K+ +++ +L + G Y
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYL--MEMTE 178
+I G + G+ + A F+ + G P+ Y L+ G+ +A + ++ +E
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 424
Query: 179 MGLTPISRCFDLVTDGL 195
M + I+ ++++ GL
Sbjct: 425 MDVDIIT--YNIIIQGL 439
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%)
Query: 32 MVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91
+ +KM G DL +F LI C+ + + + + KLG + T L+
Sbjct: 101 LYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFC 160
Query: 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151
+ EA L+ ++ G P +Y +I G + ++A F ++ KG +
Sbjct: 161 QGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAV 220
Query: 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
Y TLI+ GR+ +AA L +M + + P
Sbjct: 221 TYNTLISGLSNSGRWTDAARLLRDMVKRKIDP 252
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 75/182 (41%)
Query: 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85
+ A + +M++ P + F ++ I K + + + +Y+ + LG D+ ++ I
Sbjct: 60 FDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTI 119
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
LI + + A LL +++ G P ++ G + +F +A + G
Sbjct: 120 LIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFG 179
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
PN +Y T+I + A M + G+ + ++ + GL N G+ A
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239
Query: 206 KI 207
++
Sbjct: 240 RL 241
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G L+ G A ++A+ + +M+ G P++ T+N+L++ +CK+G+
Sbjct: 406 MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E + ++ + K D+ TY I+ + KAG +++ + L +L G P Y
Sbjct: 466 LEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNT 525
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G ++G ++A+ F ++K G P+ Y TLI R G +A + EM
Sbjct: 526 MISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCR 585
Query: 181 LTPISRCFDLVTDGLKN 197
+ + LVTD L +
Sbjct: 586 FAGDASTYGLVTDMLHD 602
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G+ P LV GL A +V +M+ +G PDL T+ ++I +CK GE
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + + K ADV Y +I ++ K +D+A L + G P Y+
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G++ DA S++ + PN + +LI + G+ +EA EM +
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
+ P ++ + +G + D A++I L VS
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G+ P + + L+ G + + A +V++M++ G PD TF +L+ + + +
Sbjct: 126 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 185
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V + + G D+ TY +I + K G D A LL+ + + +Y+
Sbjct: 186 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYST 245
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + DDA F+E+ KG P+ Y++LI+ GR+ +A+ L +M E
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P F+ + D GK AEK+
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKL 332
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 90/200 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ NP V + L+ G L A+++ ++MI++ DP++ T+NSLI C
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR 360
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +++ + DV TY LI KA + + L ++ G Y
Sbjct: 361 LDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTT 420
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G F+ D+A F ++ G PN Y TL+ + G+ +A + +
Sbjct: 421 LIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK 480
Query: 181 LTPISRCFDLVTDGLKNCGK 200
+ P ++++++G+ GK
Sbjct: 481 MEPDIYTYNIMSEGMCKAGK 500
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 85/195 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P + + L+ G L+ A+Q+ M+ + PD+ T+N+LI CK+ +
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V +E++ + + G + TY LI +A D A + +V DG +P Y
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G + G+ + A F ++ P+ Y + + G+ + + ++ G
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515
Query: 181 LTPISRCFDLVTDGL 195
+ P ++ + G
Sbjct: 516 VKPDVIAYNTMISGF 530
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P V L+ L N G A ++++ M+++ +P++ TFNSLI+ K G+
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +++ + + ++ TY LI +DEA ++ +V P Y
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + D F ++ +G N YTTLI + A +M G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ P ++ + DGL GK + A
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKA 469
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P + ++ GL G + A ++NKM K + D+ ++++I+++CK
Sbjct: 196 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRH 255
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ + ++ + G DV TY LI + G +A RLL +++E NP +
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + G+ +A F E+ + PN Y +LI R EA M
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375
Query: 181 LTPISRCFDLVTDGL 195
P ++ + +G
Sbjct: 376 CLPDVVTYNTLINGF 390
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 85/198 (42%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
++ L +++ A + +M +G PD+ T++SLI +C G + + +
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
+V T+ LI A +K G + EA +L +++ +P Y +I G + D+A
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 365
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
F+ + K P+ Y TLI + + V+ +M+ GL + + + G
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425
Query: 196 KNCGKHDLAEKIEQLEVS 213
D A+ + + VS
Sbjct: 426 FQASDCDNAQMVFKQMVS 443
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 35 KMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94
KM G +L T+N +I +C+ ++ F + + + KLG + T L+
Sbjct: 90 KMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 149
Query: 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154
I EA L+ +VE G+ P + ++ G F+ + +A + +KG P+ Y
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 155 TLIT-MCGRG 163
+I +C RG
Sbjct: 210 AVINGLCKRG 219
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 76/179 (42%)
Query: 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85
L+ A + +M+K P + F+ L+ I K + + + + LG ++ TY I
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
+I + + + A +L +++ G+ P ++ G + +A ++ G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
+ P+ +TTL+ + + EA + M G P + V +GL G+ DLA
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+S KG P V + ++ G G E A + KM + G PD T+N+LI + G+
Sbjct: 511 LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGD 570
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAF 100
E+ + D STY L+ + G +D+ F
Sbjct: 571 KAASAELIKEMRSCRFAGDASTYG-LVTDMLHDGRLDKGF 609
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 94/204 (46%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G+ P + L+ G + + A +V++M++ G PD TF +LI + +
Sbjct: 75 GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEA 134
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
V + + + G ++ TY +++ + K G ID AF LL+ + ++ II
Sbjct: 135 VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDS 194
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ DDA F E++ KG PN Y++LI+ GR+ +A+ L +M E + P
Sbjct: 195 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN 254
Query: 185 SRCFDLVTDGLKNCGKHDLAEKIE 208
F+ + D GK AEK+
Sbjct: 255 LVTFNALIDAFVKEGKFVEAEKLH 278
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G L+QGL + G ++A+++ +M+ G PD+ T++ L++ +C +G+
Sbjct: 351 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 410
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E +E++ + K D+ Y +I + KAG +D+ + L +L G P Y
Sbjct: 411 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 470
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176
+I G + +A+ ++K G P+ Y TLI R G +A + EM
Sbjct: 471 MISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 93/207 (44%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG P V L+ L + G A Q+++ MI++ +P+L TFN+LI+ K G+
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+++ + K D+ TY LI +D+A ++ +V P Y
Sbjct: 271 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + + +D F E+ +G + YTTLI G A +M G
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ P + ++ DGL N GK + A ++
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEV 417
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G+ P L+ GL A +V++M+++G P+L T+ ++ +CK G+
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + ADV + +I ++ K +D+A L + G P Y+
Sbjct: 166 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 225
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G++ DA S++ K PN + LI + G+FVEA +M +
Sbjct: 226 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210
+ P ++ + +G C HD +K +Q+
Sbjct: 286 IDPDIFTYNSLINGF--C-MHDRLDKAKQM 312
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +K NP + + L+ + G A+++ + MIK+ DPD+ T+NSLI C
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDR 305
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ +M+ + D+ TY LI K+ +++ L + G Y
Sbjct: 306 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT-MCGRGG--RFVEAANYLMEMT 177
+I+G F G D+A F ++ G PP+ Y+ L+ +C G + +E +Y M+ +
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY-MQKS 424
Query: 178 EMGL 181
E+ L
Sbjct: 425 EIKL 428
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 35/248 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P + ++V GL G ++ A ++NKM + D+ FN++I+++CK
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ + ++ + G +V TY LI + G +A +LL +++E NP +
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260
Query: 121 IIKGAFRRGQFDDA-------------------------FCF----------FSEIKIKG 145
+I + G+F +A FC F + K
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
P+ Y TLI + R + EM+ GL + + + GL + G D A+
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380
Query: 206 KIEQLEVS 213
K+ + VS
Sbjct: 381 KVFKQMVS 388
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%)
Query: 36 MIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM 95
M+K P + FN L+ I K + + + + + +LG ++ TY ILI +
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 96 IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTT 155
I A LL +++ G+ P + ++ G + DA ++ G+ P+ +TT
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 156 LITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204
LI + EA + M + G P + +V +GL G DLA
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 65/161 (40%)
Query: 35 KMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94
KM + G +L T+N LI C+ ++ + + + KLG + T L+
Sbjct: 35 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 94
Query: 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154
I +A L+ +VE G+ P + +I G F + +A + +G PN Y
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 154
Query: 155 TLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
++ + G A N L +M + F+ + D L
Sbjct: 155 VVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSL 195
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+S KG P V + ++ GL + L+ A ++ KM + G PD T+N+LI + G+
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAF 100
E+ + D ST L+ + G +D++F
Sbjct: 516 KAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLDKSF 554
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 93/189 (49%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
++Q L A LE A K + G D +T+N+L+ G E+Y S+ K
Sbjct: 249 VIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTD 308
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
S D STY+++IP+++K+G +D AF+L + E P S+++ ++ + G+ D +
Sbjct: 309 SLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSM 368
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
+ E++ GH P+ ++ +LI + G+ A EM + G P + ++ +
Sbjct: 369 KVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESH 428
Query: 196 KNCGKHDLA 204
GK ++A
Sbjct: 429 AKSGKLEVA 437
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 2/195 (1%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73
+L++ L +G L++A ++ +M ++ P F+SL++++ K+G ++ +++Y +
Sbjct: 317 ELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQG 376
Query: 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133
G + + LI + +KAG +D A RL + + G P LY II+ + G+ +
Sbjct: 377 FGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEV 436
Query: 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP-ISRCFDLVT 192
A F +++ G P Y+ L+ M G+ A MT GL P +S L+T
Sbjct: 437 AMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLT 496
Query: 193 DGLKNCGKHDLAEKI 207
L N D+A KI
Sbjct: 497 -LLANKRLVDVAGKI 510
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ LN G A ++ M K S D T+ +I ++ KSG ++ +++ + +
Sbjct: 284 LMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERK 343
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
S + L+ ++ KAG +D + ++ + GH P +++ +I + G+ D A
Sbjct: 344 LRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTAL 403
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
+ E+K G PN +YT +I + G+ A +M + G P + + +
Sbjct: 404 RLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMH 463
Query: 196 KNCGKHDLAEKI 207
G+ D A KI
Sbjct: 464 AGSGQVDSAMKI 475
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ P LV + AG L+++ ++ +M G P F SLI++ K+G+
Sbjct: 339 MKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGK 398
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + ++ + K G + Y ++I + +K+G ++ A + ++ + G P PS Y+
Sbjct: 399 LDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSC 458
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+++ GQ D A ++ + G P Y +L+T+ A L+EM MG
Sbjct: 459 LLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMG 518
Query: 181 LT 182
+
Sbjct: 519 YS 520
Score = 37.4 bits (85), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M GF P L++ +G ++SA ++ N M G P L ++ SL+ +
Sbjct: 444 MEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANKRL 503
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ ++ + +G DV +L+ + A +D A + L + G +
Sbjct: 504 VDVAGKILLEMKAMGYSVDVCASDVLMIYIKDAS-VDLALKWLRFMGSSGIKTNNFIIRQ 562
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR 162
+ + + G +D A RP+ TL+ G+
Sbjct: 563 LFESCMKNGLYDSA---------------RPLLETLVHSAGK 589
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 93/203 (45%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G+ P + L+ G ++ + A +V++M++ G PD TF +LI + +
Sbjct: 148 GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
V + + + G D+ TY ++ + K G ID A LL + + +Y II G
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 267
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
+ DDA F+E+ KG P+ Y++LI+ GR+ +A+ L +M E + P
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPN 327
Query: 185 SRCFDLVTDGLKNCGKHDLAEKI 207
F + D GK AEK+
Sbjct: 328 VVTFSALIDAFVKEGKLVEAEKL 350
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 94/197 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS +G L+ G A ++A+ + +M+ G P++ T+N L++ +CK+G+
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + ++ + + D+ TY I+I + KAG +++ + L NL G +P Y
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G R+G ++A ++K G PN Y TLI R G +A + EM G
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCG 603
Query: 181 LTPISRCFDLVTDGLKN 197
+ LVT+ L +
Sbjct: 604 FAGDASTIGLVTNMLHD 620
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G+ P L+ GL A +V++M+++G PDL T+ +++ +CK G+
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + + K ADV Y +I + K +D+A L + G P Y+
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G++ DA S++ + PN ++ LI + G+ VEA EM +
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 358
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
+ P + + +G + D A+ + +L +S
Sbjct: 359 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 391
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 2/217 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +KG P V L+ L N G A ++++ MI++ +P++ TF++LI+ K G+
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++Y + K D+ TY LI +DEA + ++ P Y+
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+IKG + + ++ F E+ +G N YTTLI + A +M +G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRSV 217
+ P ++++ DGL C LA+ + E RS
Sbjct: 464 VHPNILTYNILLDGL--CKNGKLAKAMVVFEYLQRST 498
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++ NP V L+ + G L A+++ ++MIK+ DPD+ T++SLI C
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 378
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ M+ + +V TY LI KA ++E L + + G Y
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTT 438
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G F+ D+A F ++ G PN Y L+ + G+ +A +
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498
Query: 181 LTPISRCFDLVTDGLKNCGK 200
+ P ++++ +G+ GK
Sbjct: 499 MEPDIYTYNIMIEGMCKAGK 518
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 36/247 (14%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + +P + L+ G L+ AK M MI + P++ T+++LI+ CK+
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 61 VEFCVEMYYSVCK-----------------------------------LGSCADVSTYKI 85
VE +E++ + + +G ++ TY I
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
L+ + K G + +A + L P Y +I+G + G+ +D + F + +KG
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD-LVTDGLKNCGKHDLA 204
PN Y T+I+ R G EA + L +M E G P S ++ L+ L++ + A
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593
Query: 205 EKIEQLE 211
E I+++
Sbjct: 594 ELIKEMR 600
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%)
Query: 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
R++L L + ++ A + M+K P + FN L+ + K + E + + +
Sbjct: 51 REILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQ 110
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
LG D+ TY I I + + A +L +++ G+ P + ++ G +
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
DA ++ G+ P+ +TTLI + EA + +M + G P + V
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230
Query: 193 DGLKNCGKHDLA 204
+GL G DLA
Sbjct: 231 NGLCKRGDIDLA 242
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 4/190 (2%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P + + L+ + E + +M G DL T++ I C+ ++ + +
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ KLG D+ T L+ + I +A L+ +VE G+ P + +I G F
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT-MCGRGGRFVEAANYLMEMTEMG-LTPIS 185
+ +A ++ +G P+ Y T++ +C RG ++ A L++ E G +
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD--IDLALSLLKKMEKGKIEADV 258
Query: 186 RCFDLVTDGL 195
++ + DGL
Sbjct: 259 VIYNTIIDGL 268
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 96/192 (50%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
+V+G+ ++G L+ A +V +MI G P++ + +LI+T ++ + + + + G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
D+ Y LI +SKA +DEA L +VE+G P Y I G +F A
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
+ E++ G PN+ + T LI + G+ +EA + M + G+ ++ + ++ +GL
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Query: 196 KNCGKHDLAEKI 207
K D AE+I
Sbjct: 603 FKNDKVDDAEEI 614
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%)
Query: 24 GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTY 83
G +E AK + + MI G P + + SLIE C+ V E+ + K TY
Sbjct: 361 GVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTY 420
Query: 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI 143
++ + +G +D A+ ++ ++ G P +Y +IK + +F DA E+K
Sbjct: 421 GTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE 480
Query: 144 KGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
+G P+ Y +LI + R EA ++L+EM E GL P
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKP 520
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 1/207 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+G + +L+ GL ++ A+++ +M +G PD+ ++ LI K G
Sbjct: 583 MVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGN 642
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ ++ + + G +V Y +L+ ++G I++A LL + G +P Y
Sbjct: 643 MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCT 702
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
II G + G +AF F E+K+KG P+ VYTTL+ C R VE A + + G
Sbjct: 703 IIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND-VERAITIFGTNKKG 761
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
+ F+ + + + GK +L ++
Sbjct: 762 CASSTAPFNALINWVFKFGKTELKTEV 788
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 2/205 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P + G + A SA + V +M + G P+ LI CK G+
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V Y S+ G D TY +L+ + K +D+A + + G P Y
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G A F E+ +G PN +Y L+ R G +A L EM+ G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAE 205
L P + + + DG C DLAE
Sbjct: 693 LHPNAVTYCTIIDGY--CKSGDLAE 715
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 4/184 (2%)
Query: 15 LLVQGLLN----AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYS 70
+L GL+N G + A M+ QG D +T+ L+ + K+ +V+ E++
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 71 VCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ 130
+ G DV +Y +LI SK G + +A + +VE+G P +Y ++ G R G+
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677
Query: 131 FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDL 190
+ A E+ +KG PN Y T+I + G EA EM GL P S +
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737
Query: 191 VTDG 194
+ DG
Sbjct: 738 LVDG 741
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 2/203 (0%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
LL+ GLL ++AK +V++M+ G + ++ I + K G +E ++ +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIAS 376
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134
G Y LI + + + + LL + + P Y ++KG G D A
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194
+ E+ G PN +YTTLI + RF +A L EM E G+ P C++ + G
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496
Query: 195 LKNCGKHDLAEK--IEQLEVSLR 215
L + D A +E +E L+
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLK 519
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%)
Query: 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85
++ A ++ MI +G P T++ LI+ +CK +E + + LG D TY +
Sbjct: 258 VDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317
Query: 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145
LI + K D A L+H +V G N P +Y I + G + A F + G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377
Query: 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205
P Y +LI R + L+EM + + + V G+ + G D A
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437
Query: 206 KI 207
I
Sbjct: 438 NI 439
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 13/191 (6%)
Query: 38 KQGSDPDLETFNSLIETICKSGEVEFCVE-----MYYSVCKLGSCADVSTYKILIPAVSK 92
K+G FN+LI + K G+ E E M S + G DV TY I+I + K
Sbjct: 759 KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDV-TYNIMIDYLCK 817
Query: 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV 152
G ++ A L H + P Y ++ G + G+ + F F E G P+ +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 153 YTTLITMCGRGGRFVEAANYLMEMTEMGLT------PISRCFDLVTDGLKNCGKHDLAEK 206
Y+ +I + G +A + +M IS C L++ G G+ ++AEK
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLS-GFAKVGEMEVAEK 936
Query: 207 IEQLEVSLRSV 217
+ + V L+ +
Sbjct: 937 VMENMVRLQYI 947
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSD----PDLETFNSLIETICKSGEVEFCVEMYYSV 71
L+ + G E +++N+++ D P+ T+N +I+ +CK G +E E+++ +
Sbjct: 772 LINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM 831
Query: 72 CKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131
V TY L+ K G E F + + G P +Y+ II + G
Sbjct: 832 QNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMT 891
Query: 132 DDAFCFFSEI 141
A ++
Sbjct: 892 TKALVLVDQM 901
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 82/199 (41%), Gaps = 14/199 (7%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+L G + GY+E A + + + P L L++ + + ++ ++Y + +
Sbjct: 156 ILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVER 215
Query: 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134
DV TY +LI A +AG + +L +++ F + + D A
Sbjct: 216 NVVFDVKTYHMLIIAHCRAGNV----QLGKDVLFKTEKEFRTATLNV----------DGA 261
Query: 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194
+ KG P + Y LI + R +A + L+EM +G++ + + L+ DG
Sbjct: 262 LKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDG 321
Query: 195 LKNCGKHDLAEKIEQLEVS 213
L D A+ + VS
Sbjct: 322 LLKGRNADAAKGLVHEMVS 340
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 95/210 (45%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G P + L+ G AG L ++ ++ + +G D+ F+S I+ KSG+
Sbjct: 312 MEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGD 371
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +Y + G +V TY ILI + + G I EAF + +++ G P Y+
Sbjct: 372 LATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSS 431
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + G F + ++ G+PP+ +Y L+ + G + A + ++M
Sbjct: 432 LIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQS 491
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210
+ F+ + DG + D A K+ +L
Sbjct: 492 IRLNVVVFNSLIDGWCRLNRFDEALKVFRL 521
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 3 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVE 62
++GF + + +++GL + +E A ++++ ++ G P++ TF +LI CK GE++
Sbjct: 245 ERGFRVGIVSCNKVLKGL-SVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMD 303
Query: 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122
+++ + + G D+ Y LI KAGM+ +L + G +++ I
Sbjct: 304 RAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTI 363
Query: 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLT 182
+ G A + + +G PN YT LI + GR EA ++ + G+
Sbjct: 364 DVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423
Query: 183 PISRCFDLVTDGLKNCG 199
P + + DG CG
Sbjct: 424 PSIVTYSSLIDGFCKCG 440
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 2 SDKGFNPPVRGR---DLLVQGLLNAGY-----LESAKQMVNKMIKQGSDPDLETFNSLIE 53
+ K FN + G+ D++ + GY L+ A+++ + P+ T LI
Sbjct: 620 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIH 679
Query: 54 TICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP 113
+CK+ +++ + M+ + + GS + TY L+ SK+ I+ +F+L + E G +P
Sbjct: 680 VLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISP 739
Query: 114 FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYL 173
Y+ II G +RG+ D+A F + P+ Y LI + GR VEAA
Sbjct: 740 SIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLY 799
Query: 174 MEMTEMGLTP 183
M G+ P
Sbjct: 800 EHMLRNGVKP 809
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 35/198 (17%)
Query: 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV 80
+ +G L +A + +M+ QG P++ T+ LI+ +C+ G + MY + K G +
Sbjct: 367 VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSI 426
Query: 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG----------- 129
TY LI K G + F L ++++ G+ P +Y ++ G ++G
Sbjct: 427 VTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVK 486
Query: 130 ------------------------QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR 165
+FD+A F + I G P+ +TT++ + GR
Sbjct: 487 MLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGR 546
Query: 166 FVEAANYLMEMTEMGLTP 183
EA M +MGL P
Sbjct: 547 LEEALFLFFRMFKMGLEP 564
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 2/215 (0%)
Query: 3 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVE 62
D G P V L+ G G ++ A + M ++G +PDL +++LI+ K+G +
Sbjct: 279 DCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLG 338
Query: 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122
+++ G DV + I K+G + A + ++ G +P Y +I
Sbjct: 339 MGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILI 398
Query: 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLT 182
KG + G+ +AF + +I +G P+ Y++LI + G +M +MG
Sbjct: 399 KGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYP 458
Query: 183 PISRCFDLVTDGLKNCG--KHDLAEKIEQLEVSLR 215
P + ++ DGL G H + ++ L S+R
Sbjct: 459 PDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIR 493
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%)
Query: 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCV 65
F P +L+ L ++ A +M + M ++GS P+ T+ L++ KS ++E
Sbjct: 667 FGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSF 726
Query: 66 EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125
+++ + + G + +Y I+I + K G +DEA + H ++ P YA +I+G
Sbjct: 727 KLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGY 786
Query: 126 FRRGQFDDAFCFFSEIKIKGHPPN 149
+ G+ +A + + G P+
Sbjct: 787 CKVGRLVEAALLYEHMLRNGVKPD 810
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 4/217 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P V +++ + G LE A + +M K G +PD + +LI+ CK +
Sbjct: 522 MGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMK 581
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++++ + + AD++ ++I + K I++A + +NL+E P Y
Sbjct: 582 PTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNT 641
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + D+A F +K+ PN T LI + + A M E G
Sbjct: 642 MICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKG 701
Query: 181 LTPISRCFDLVTDGLKNC----GKHDLAEKIEQLEVS 213
P + + + D G L E++++ +S
Sbjct: 702 SKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGIS 738
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 10/215 (4%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G+ P V +LV GL G + A + KM+ Q ++ FNSLI+ C+
Sbjct: 452 MIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNR 511
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ ++++ + G DV+T+ ++ G ++EA L + + G P Y
Sbjct: 512 FDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCT 571
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + + F ++ + V +I + + R +A+ + + E
Sbjct: 572 LIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGK 631
Query: 181 LTPISRCFDLVTDGLKNCG-----KHDLAEKIEQL 210
+ P D+VT CG + D AE+I +L
Sbjct: 632 MEP-----DIVTYNTMICGYCSLRRLDEAERIFEL 661
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M++KG P L+ + +E + ++ +M ++G P + +++ +I+ +CK G
Sbjct: 697 MAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR 756
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP 113
V+ +++ DV Y ILI K G + EA L +++ +G P
Sbjct: 757 VDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKP 809
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 4/198 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
+S +G + L+ G L +A+ + +MI G PD T N L+ C++ +
Sbjct: 458 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 517
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+E +E++ + D Y I+I + K +DEA+ L +L G P Y
Sbjct: 518 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNV 577
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + DA F ++K GH P+ Y TLI C + G ++ + EM G
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNG 637
Query: 181 LT----PISRCFDLVTDG 194
+ I DL+TDG
Sbjct: 638 FSGDAFTIKMVADLITDG 655
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 92/219 (42%), Gaps = 17/219 (7%)
Query: 5 GFNPPVRGRDLLVQGL----------------LNAGYLESAKQMVNKMIKQGSDPDLETF 48
GF P V + L+ GL + G+LE A + ++M++ G P + TF
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE-AVALFDQMVEIGLTPVVITF 229
Query: 49 NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 108
N+LI +C G V + + G DV TY ++ + K G A LL + E
Sbjct: 230 NTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEE 289
Query: 109 DGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168
P +Y+ II + G DA FSE+ KG PN Y +I GR+ +
Sbjct: 290 THIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSD 349
Query: 169 AANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
A L +M E + P F+ + GK AEK+
Sbjct: 350 AQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M + G P V + L+ GL G + A +VNKM+ +G D+ T+ +++ +CK G+
Sbjct: 217 MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 276
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + + + DV Y +I + K G +A L ++E G P Y
Sbjct: 277 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 336
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G G++ DA ++ + P+ + LI+ + G+ EA EM
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213
+ P + ++ + G + D A+ + L S
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 4/193 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M KG + V +V G+ G +SA +++KM + PD+ ++++I+ +CK G
Sbjct: 252 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGH 311
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ + + G +V TY +I G +A RLL +++E NP +
Sbjct: 312 HSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I + + G+ +A E+ + P+ Y ++I + RF +A + M ++
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH----MFDLM 427
Query: 181 LTPISRCFDLVTD 193
+P F+ + D
Sbjct: 428 ASPDVVTFNTIID 440
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 17/210 (8%)
Query: 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETIC----------------K 57
++L++ + L + K+ K G PD+ TFN+L+ +C +
Sbjct: 145 NILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE 204
Query: 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL 117
+G +E V ++ + ++G V T+ LI + G + EA L++ +V G +
Sbjct: 205 TGFLE-AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVT 263
Query: 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177
Y I+ G + G A S+++ P+ +Y+ +I + G +A EM
Sbjct: 264 YGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML 323
Query: 178 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
E G+ P ++ + DG + G+ A+++
Sbjct: 324 EKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 86/198 (43%), Gaps = 6/198 (3%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P + ++ G + AK M + M + PD+ TFN++I+ C++ V+ +++
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQL 454
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ + G A+ +TY LI + ++ A L ++ G P ++ G
Sbjct: 455 LREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCE 514
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
+ ++A F I++ + Y +I +G + EA + + G+ P +
Sbjct: 515 NEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQT 574
Query: 188 FDLVTDGLKNCGKHDLAE 205
++++ G CGK +++
Sbjct: 575 YNVMISGF--CGKSAISD 590
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
G P V+ ++++ G + A + +KM G +PD T+N+LI K+GE++
Sbjct: 567 GVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAF 100
+E+ + G D T K++ ++ G +D++F
Sbjct: 627 IELISEMRSNGFSGDAFTIKMVADLITD-GRLDKSF 661
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 17/185 (9%)
Query: 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLL 103
++ +FN LI+ C ++ F + + + KLG DV T+ L+ + I EA L
Sbjct: 140 NIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALF 199
Query: 104 HNLVEDGH---------------NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148
+VE G P + +I G G+ +A +++ KG
Sbjct: 200 GYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHI 259
Query: 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI- 207
+ Y T++ + G A N L +M E + P + + D L G H A+ +
Sbjct: 260 DVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLF 319
Query: 208 -EQLE 211
E LE
Sbjct: 320 SEMLE 324
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 94/199 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +G +P ++L+ GL G L ++V+ M +G P+ T+N+LI +C G+
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
++ V + + + TY LI + K +A RLL ++ E G++ +Y+
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G F+ G+ ++A + ++ KG PN VY+ L+ R G+ EA L M G
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427
Query: 181 LTPISRCFDLVTDGLKNCG 199
P + + + G G
Sbjct: 428 CLPNAYTYSSLMKGFFKTG 446
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ GL ++ A ++++M +G P +N LI+ +CK G++ ++ ++ G
Sbjct: 228 LMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG 287
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
+ TY LI + G +D+A LL +V P Y +I G ++ + DA
Sbjct: 288 CVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAV 347
Query: 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195
S ++ +G+ N+ +Y+ LI+ + G+ EA + +M E G P + ++ DGL
Sbjct: 348 RLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGL 407
Query: 196 KNCGKHDLAEKI 207
GK + A++I
Sbjct: 408 CREGKPNEAKEI 419
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M++KG P + +LV GL G AK+++N+MI G P+ T++SL++ K+G
Sbjct: 388 MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E V+++ + K G + Y +LI + G + EA + ++ G P Y+
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSS 507
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP---VYTTLITMCGRGGRFVEAANYLMEMT 177
IIKG G D A + E+ + P ++P Y L+ A + L M
Sbjct: 508 IIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSML 567
Query: 178 EMGLTP 183
+ G P
Sbjct: 568 DRGCDP 573
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 94/193 (48%), Gaps = 2/193 (1%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ GL+ A ++++ M ++G + ++ LI + K G+ E + ++ + + G
Sbjct: 333 LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392
Query: 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135
++ Y +L+ + + G +EA +L+ ++ G P Y+ ++KG F+ G ++A
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV 452
Query: 136 CFFSEIKIKGHPPNRPVYTTLIT-MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194
+ E+ G N+ Y+ LI +CG GR EA +M +G+ P + + + G
Sbjct: 453 QVWKEMDKTGCSRNKFCYSVLIDGLCGV-GRVKEAMMVWSKMLTIGIKPDTVAYSSIIKG 511
Query: 195 LKNCGKHDLAEKI 207
L G D A K+
Sbjct: 512 LCGIGSMDAALKL 524
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 100/217 (46%), Gaps = 5/217 (2%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M ++G++ +L+ GL G E A + KM ++G P++ ++ L++ +C+ G+
Sbjct: 353 MEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGK 412
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
E+ + G + TY L+ K G+ +EA ++ + + G + Y+
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSV 472
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT-MCGRGGRFVEAANY--LMEMT 177
+I G G+ +A +S++ G P+ Y+++I +CG G Y ++
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQE 532
Query: 178 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214
E P ++++ DGL C + D++ ++ L L
Sbjct: 533 EPKSQPDVVTYNILLDGL--CMQKDISRAVDLLNSML 567
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 3/194 (1%)
Query: 2 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV 61
S K FN + ++ +GL + G LE +VN + P+ +FN +I+ +CK V
Sbjct: 147 SVKSFNSVLNV--IINEGLYHRG-LEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFV 203
Query: 62 EFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI 121
+ +E++ + + D TY L+ + K IDEA LL + +G +P P +Y +
Sbjct: 204 DRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVL 263
Query: 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181
I G ++G + +KG PN Y TLI G+ +A + L M
Sbjct: 264 IDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKC 323
Query: 182 TPISRCFDLVTDGL 195
P + + +GL
Sbjct: 324 IPNDVTYGTLINGL 337
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ---GSDPDLETFNSLIETICKSGEV 61
G P +++GL G +++A ++ ++M+ Q S PD+ T+N L++ +C ++
Sbjct: 497 GIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDI 556
Query: 62 EFCVEMYYSVCKLGSCADVSTYKILIPAVS-KAGMIDEAFRLLHNLV 107
V++ S+ G DV T + +S K+ D+ L LV
Sbjct: 557 SRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELV 603
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETI------CKSGE 60
P V ++L+ GL + A ++N M+ +G DPD+ T N+ + T+ C G
Sbjct: 537 QPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGR 596
Query: 61 VEFCVEMYYSVCKL----GSCADVSTY--KILIPAVSKAGMI 96
F E+ + K G+C V K L P S MI
Sbjct: 597 -SFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMI 637
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGY-LESAKQMVNKMIKQGSDPDLETFNSLIETICKSG 59
M + G P + + ++ G + + ++M + G PD TFNSL+ + G
Sbjct: 294 MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGG 353
Query: 60 EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119
E ++ + DV +Y L+ A+ K G +D AF +L + P Y+
Sbjct: 354 LWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 413
Query: 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179
+I G + G+FD+A F E++ G +R Y TL+++ + GR EA + L EM +
Sbjct: 414 TVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASV 473
Query: 180 GLTPISRCFDLVTDGLKNCGKHDLAEKI 207
G+ ++ + G GK+D +K+
Sbjct: 474 GIKKDVVTYNALLGGYGKQGKYDEVKKV 501
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 49 NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 108
+++I T+ + G+V ++ + G V + LI A ++G+ +EA + +++ E
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296
Query: 109 DGHNPFPSLYAPIIKGAFRRG-QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167
G P Y +I + G +F FF E++ G P+R + +L+ +C RGG +
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356
Query: 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207
A N EMT + ++ + D + G+ DLA +I
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEI 396
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P V ++ G AG + A + +M G D ++N+L+ K G E +++
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDI 466
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127
+ +G DV TY L+ K G DE ++ + + P Y+ +I G +
Sbjct: 467 LREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSK 526
Query: 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187
G + +A F E K G + +Y+ LI + G A + + EMT+ G++P
Sbjct: 527 GGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVT 586
Query: 188 FDLVTDGLKNCGKHD 202
++ + D D
Sbjct: 587 YNSIIDAFGRSATMD 601
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 91/195 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+++ V + L+ + G ++ A +++ +M + P++ +++++I+ K+G
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + ++ + LG D +Y L+ +K G +EA +L + G Y
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G ++G++D+ F+E+K + PN Y+TLI +GG + EA E G
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544
Query: 181 LTPISRCFDLVTDGL 195
L + + D L
Sbjct: 545 LRADVVLYSALIDAL 559
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 12/199 (6%)
Query: 24 GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTY 83
G E A ++ +M G D+ T+N+L+ K G+ + +++ + + ++ TY
Sbjct: 458 GRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTY 517
Query: 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI 143
LI SK G+ EA + G LY+ +I + G A E+
Sbjct: 518 STLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577
Query: 144 KGHPPNRPVYTTLITMCGRGGRFVEAANY------------LMEMTEMGLTPISRCFDLV 191
+G PN Y ++I GR +A+Y L +TE + + F +
Sbjct: 578 EGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQL 637
Query: 192 TDGLKNCGKHDLAEKIEQL 210
T N D E +++L
Sbjct: 638 TTESNNRTTKDCEEGMQEL 656
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M+ G V + L+ G G + K++ +M ++ P+L T+++LI+ K G
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGL 529
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +E++ G ADV Y LI A+ K G++ A L+ + ++G +P Y
Sbjct: 530 YKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNS 589
Query: 121 IIKGAFRRGQFD 132
II R D
Sbjct: 590 IIDAFGRSATMD 601
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 27/185 (14%)
Query: 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75
L+ G G + A ++ + G D+ +++LI+ +CK+G V V + + K G
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG 579
Query: 76 SCADVSTYKILIPAVSKAGMIDEAF------------RLLHNLVEDGHNPFPSLYAPIIK 123
+V TY +I A ++ +D + L L E N L+ +
Sbjct: 580 ISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTT 639
Query: 124 GAFRRGQFD------------DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAAN 171
+ R D + F +++IK PN ++ ++ C R F +A+
Sbjct: 640 ESNNRTTKDCEEGMQELSCILEVFRKMHQLEIK---PNVVTFSAILNACSRCNSFEDASM 696
Query: 172 YLMEM 176
L E+
Sbjct: 697 LLEEL 701
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M D+G +P V L+ GL +G L A++ +++M + +P++ TF++LI+ K G+
Sbjct: 219 MKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGK 278
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ +Y + ++ +V TY LI + +DEA ++L ++ G P Y+
Sbjct: 279 LSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYST 338
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+ G F+ + DD ++ +G N TLI + G+ A MT G
Sbjct: 339 LANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNG 398
Query: 181 LTPISRCFDLVTDGL 195
L P R +++V GL
Sbjct: 399 LIPNIRSYNIVLAGL 413
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 2/186 (1%)
Query: 27 ESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86
SA + KM+K G +PD+ T +SL+ C S ++ V + + K+G DV IL
Sbjct: 140 SSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTIL 199
Query: 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH 146
I + K ++ A +L + + G +P Y+ +I G + G+ DA E+ K
Sbjct: 200 IDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKI 259
Query: 147 PPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 206
PN ++ LI + G+ + + M +M + P + + GL C + + E
Sbjct: 260 NPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGL--CMHNRVDEA 317
Query: 207 IEQLEV 212
I+ L++
Sbjct: 318 IKMLDL 323
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P + LV G + ++ A + +M K G D+ LI+T+CK+
Sbjct: 149 MMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRL 208
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V +E+ + G +V TY LI + K+G + +A R LH + NP ++
Sbjct: 209 VVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSA 268
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I +RG+ + + PN Y++LI R EA L M G
Sbjct: 269 LIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 328
Query: 181 LTPISRCFDLVTDGLKNCGKHD 202
TP + + +G + D
Sbjct: 329 CTPNVVTYSTLANGFFKSSRVD 350
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G V +L+ L + A +++ +M +G P++ T++SLI +CKSG
Sbjct: 184 MEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGR 243
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ + + +V T+ LI A +K G + + + +++ +P Y+
Sbjct: 244 LADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSS 303
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + D+A + KG PN Y+TL + R + L +M + G
Sbjct: 304 LIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRG 363
Query: 181 LTPISRCFDLVTDGLKNCGKHDLA 204
+ + + + G GK DLA
Sbjct: 364 VAANTVSCNTLIKGYFQAGKIDLA 387
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 89/210 (42%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M +P V L+ GL ++ A +M++ MI +G P++ T+++L KS
Sbjct: 289 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 348
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
V+ +++ + + G A+ + LI +AG ID A + + +G P Y
Sbjct: 349 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 408
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
++ G F G+ + A F ++ + + YT +I + EA + ++
Sbjct: 409 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKR 468
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210
+ P + + ++ L G A+ + +
Sbjct: 469 VEPDFKAYTIMIAELNRAGMRTEADALNRF 498
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
M G P V + LV GL G A ++ M+K+ +P++ TF +LI+ K G+
Sbjct: 214 MGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK 273
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
+ E+Y + ++ DV TY LI + G++DEA ++ + + +G P +Y
Sbjct: 274 LMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTT 333
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180
+I G + + +D F E+ KG N YT LI GR A +M+
Sbjct: 334 LIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRR 393
Query: 181 LTPISRCFDLVTDGLKNCGKHDLAEKI 207
P R ++++ DGL GK + A I
Sbjct: 394 APPDIRTYNVLLDGLCCNGKVEKALMI 420
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 79/153 (51%)
Query: 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE 60
MS KG +L+QG G + A+++ N+M + + PD+ T+N L++ +C +G+
Sbjct: 354 MSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK 413
Query: 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120
VE + ++ + K ++ TY I+I + K G +++AF L +L G P Y
Sbjct: 414 VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTT 473
Query: 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVY 153
+I G RRG +A F ++K G PN VY
Sbjct: 474 MISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 94/203 (46%)
Query: 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFC 64
GF P V L++ L +L A ++ N+M GS P++ T+N+L+ +C+ G
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242
Query: 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124
+ + K +V T+ LI A K G + EA L + +++ P Y +I G
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302
Query: 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184
G D+A F ++ G PN +YTTLI + R + EM++ G+
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362
Query: 185 SRCFDLVTDGLKNCGKHDLAEKI 207
+ + ++ G G+ D+A+++
Sbjct: 363 TITYTVLIQGYCLVGRPDVAQEV 385
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%)
Query: 29 AKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88
A + KM+K G +PDL TF SL+ C +E + ++ + +G +V TY LI
Sbjct: 137 ASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196
Query: 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148
+ K ++ A L + + +G P Y ++ G G++ DA ++ + P
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256
Query: 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208
N +T LI + G+ +EA M +M + P + + +GL G D A ++
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316
Query: 209 QL 210
L
Sbjct: 317 YL 318
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 35/211 (16%)
Query: 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEM 67
P V L+ GL G L+ A+QM M + G P+ + +LI CKS VE +++
Sbjct: 291 PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKI 350
Query: 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNL--------------------- 106
+Y + + G A+ TY +LI G D A + + +
Sbjct: 351 FYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCC 410
Query: 107 ---VEDGHNPFPSL-----------YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV 152
VE F + Y II+G + G+ +DAF F + KG PN
Sbjct: 411 NGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT 470
Query: 153 YTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183
YTT+I+ R G EA + +M E G P
Sbjct: 471 YTTMISGFCRRGLIHEADSLFKKMKEDGFLP 501
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%)
Query: 40 GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEA 99
G P L T N ++ +C S + + KLG D+ T+ L+ I++A
Sbjct: 113 GIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDA 172
Query: 100 FRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITM 159
L ++ G P Y +I+ + + A F+++ G PN Y L+T
Sbjct: 173 IALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTG 232
Query: 160 CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214
GR+ +AA L +M + + P F + D GK A+++ + + +
Sbjct: 233 LCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQM 287
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 1/188 (0%)
Query: 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72
R +L GL N + A + +M+ P + F L+ I K + + ++ +
Sbjct: 52 RKILRNGLHNLQF-NDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQ 110
Query: 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132
LG + T I++ V + A L +++ G P + ++ G + +
Sbjct: 111 ILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIE 170
Query: 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192
DA F +I G PN YTTLI + A +M G P ++ +
Sbjct: 171 DAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230
Query: 193 DGLKNCGK 200
GL G+
Sbjct: 231 TGLCEIGR 238
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74
+++QG+ G +E A + + +G P++ T+ ++I C+ G + ++ + +
Sbjct: 438 IIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED 497
Query: 75 GSCADVSTYK 84
G + S YK
Sbjct: 498 GFLPNESVYK 507
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,773,157
Number of Sequences: 539616
Number of extensions: 3474583
Number of successful extensions: 11281
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 7671
Number of HSP's gapped (non-prelim): 2452
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)