Query 035645
Match_columns 217
No_of_seqs 380 out of 1090
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 04:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.1E-43 1.1E-47 285.9 26.5 209 3-211 500-710 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-43 1.1E-47 285.8 26.0 214 1-214 463-678 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.1E-39 2.4E-44 262.1 21.9 200 8-211 288-488 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.4E-39 5.2E-44 260.2 23.5 205 2-214 251-455 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 4.9E-37 1.1E-41 251.9 23.4 204 7-214 250-453 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.5E-36 5.4E-41 247.8 22.2 203 7-213 149-351 (857)
7 PRK11788 tetratricopeptide rep 99.8 4.3E-18 9.3E-23 129.3 23.4 200 12-215 109-312 (389)
8 PRK11788 tetratricopeptide rep 99.8 1.8E-17 3.9E-22 125.9 24.0 206 9-216 68-280 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 1.3E-15 2.9E-20 126.5 25.7 201 9-215 600-800 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 1.9E-15 4.1E-20 125.6 25.0 195 11-212 704-898 (899)
11 TIGR02521 type_IV_pilW type IV 99.7 9E-14 1.9E-18 97.9 24.9 203 9-215 30-233 (234)
12 PRK15174 Vi polysaccharide exp 99.6 4E-13 8.7E-18 108.0 25.0 157 54-215 221-382 (656)
13 PF13041 PPR_2: PPR repeat fam 99.6 7.6E-16 1.6E-20 81.5 6.2 50 8-57 1-50 (50)
14 PRK15174 Vi polysaccharide exp 99.6 6.8E-13 1.5E-17 106.6 25.3 124 88-214 220-347 (656)
15 TIGR00990 3a0801s09 mitochondr 99.6 8.6E-13 1.9E-17 105.9 24.7 163 11-177 332-494 (615)
16 TIGR00990 3a0801s09 mitochondr 99.6 1.3E-12 2.8E-17 104.9 25.2 205 7-215 361-572 (615)
17 PF13041 PPR_2: PPR repeat fam 99.6 2.6E-15 5.7E-20 79.5 6.0 49 148-196 1-49 (50)
18 PRK09782 bacteriophage N4 rece 99.6 2.4E-12 5.2E-17 106.6 25.4 202 8-216 507-708 (987)
19 KOG4422 Uncharacterized conser 99.6 5.9E-13 1.3E-17 97.6 19.1 203 6-212 203-460 (625)
20 PF13429 TPR_15: Tetratricopep 99.6 2.1E-14 4.7E-19 104.3 11.4 193 13-211 81-274 (280)
21 KOG4422 Uncharacterized conser 99.6 1.4E-12 3E-17 95.7 18.4 165 44-212 206-383 (625)
22 PRK09782 bacteriophage N4 rece 99.5 1.2E-11 2.5E-16 102.6 24.9 199 9-216 476-674 (987)
23 KOG4626 O-linked N-acetylgluco 99.5 7.4E-13 1.6E-17 101.2 16.2 189 20-216 296-487 (966)
24 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.5E-18 100.5 11.6 200 11-216 45-245 (280)
25 KOG4626 O-linked N-acetylgluco 99.5 7.4E-13 1.6E-17 101.2 16.1 203 6-216 247-453 (966)
26 KOG1126 DNA-binding cell divis 99.5 2.1E-12 4.5E-17 99.0 16.3 201 9-216 420-622 (638)
27 PRK12370 invasion protein regu 99.5 4.5E-11 9.7E-16 94.7 24.1 183 24-213 318-501 (553)
28 PRK12370 invasion protein regu 99.5 5.5E-11 1.2E-15 94.2 24.2 202 9-215 255-471 (553)
29 TIGR02521 type_IV_pilW type IV 99.5 6.2E-11 1.3E-15 83.4 20.9 169 43-214 29-198 (234)
30 COG3063 PilF Tfp pilus assembl 99.5 5.2E-10 1.1E-14 75.9 22.8 201 12-216 37-238 (250)
31 KOG1155 Anaphase-promoting com 99.5 4.8E-11 1E-15 88.4 19.4 206 4-213 256-494 (559)
32 KOG4318 Bicoid mRNA stability 99.5 8.9E-13 1.9E-17 104.0 10.8 198 1-205 16-291 (1088)
33 PRK11447 cellulose synthase su 99.4 1.3E-10 2.9E-15 99.3 24.5 197 13-213 464-699 (1157)
34 PRK10747 putative protoheme IX 99.4 2.2E-10 4.7E-15 87.3 22.7 201 6-214 147-390 (398)
35 PRK10049 pgaA outer membrane p 99.4 1.6E-10 3.5E-15 94.8 23.4 196 17-216 244-458 (765)
36 COG2956 Predicted N-acetylgluc 99.4 1.9E-10 4.1E-15 81.7 20.3 204 10-215 69-279 (389)
37 PRK11447 cellulose synthase su 99.4 2.3E-10 5E-15 97.9 24.7 202 9-213 494-739 (1157)
38 KOG1126 DNA-binding cell divis 99.4 1.7E-11 3.7E-16 94.1 15.7 201 11-216 354-588 (638)
39 PRK11189 lipoprotein NlpI; Pro 99.4 4.8E-10 1E-14 82.1 22.7 196 11-216 65-267 (296)
40 PRK10747 putative protoheme IX 99.4 5E-10 1.1E-14 85.3 23.1 196 13-216 121-359 (398)
41 TIGR00540 hemY_coli hemY prote 99.4 4.3E-10 9.4E-15 86.0 22.1 193 16-212 159-397 (409)
42 COG2956 Predicted N-acetylgluc 99.4 3.2E-10 6.8E-15 80.6 18.8 188 23-216 48-245 (389)
43 KOG1129 TPR repeat-containing 99.4 7.4E-11 1.6E-15 84.0 15.6 197 14-216 227-460 (478)
44 KOG1129 TPR repeat-containing 99.4 8.7E-11 1.9E-15 83.7 15.2 169 41-214 219-387 (478)
45 KOG1155 Anaphase-promoting com 99.3 7.9E-10 1.7E-14 82.1 18.3 196 11-210 331-532 (559)
46 PRK14574 hmsH outer membrane p 99.3 4.4E-09 9.6E-14 86.0 23.6 200 15-216 297-515 (822)
47 PRK10049 pgaA outer membrane p 99.3 6.1E-09 1.3E-13 85.7 24.7 119 10-132 49-167 (765)
48 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.2E-14 83.6 18.6 167 47-213 285-478 (508)
49 PRK14574 hmsH outer membrane p 99.3 9.9E-09 2.1E-13 84.1 23.8 186 17-210 41-228 (822)
50 COG3071 HemY Uncharacterized e 99.2 1.8E-08 3.8E-13 73.6 21.7 195 10-212 153-388 (400)
51 TIGR00540 hemY_coli hemY prote 99.2 5.9E-09 1.3E-13 79.9 20.5 118 23-145 97-217 (409)
52 PF12854 PPR_1: PPR repeat 99.2 1.6E-11 3.5E-16 58.8 3.9 34 4-37 1-34 (34)
53 PF04733 Coatomer_E: Coatomer 99.2 1.8E-09 3.8E-14 78.4 14.9 199 7-216 63-267 (290)
54 COG3071 HemY Uncharacterized e 99.2 6.7E-08 1.5E-12 70.7 21.8 200 11-216 119-359 (400)
55 COG3063 PilF Tfp pilus assembl 99.1 7.8E-08 1.7E-12 65.6 19.2 164 47-213 37-201 (250)
56 KOG0547 Translocase of outer m 99.1 3.7E-08 8E-13 74.0 18.8 197 13-214 363-566 (606)
57 KOG0547 Translocase of outer m 99.1 2.2E-08 4.8E-13 75.1 17.6 195 18-216 334-534 (606)
58 PF12854 PPR_1: PPR repeat 99.1 1.2E-10 2.5E-15 55.8 3.7 32 145-176 2-33 (34)
59 KOG1173 Anaphase-promoting com 99.1 4.2E-08 9.1E-13 74.8 18.7 206 7-216 309-520 (611)
60 TIGR03302 OM_YfiO outer membra 99.1 1.3E-07 2.7E-12 67.1 20.0 185 10-214 33-232 (235)
61 TIGR03302 OM_YfiO outer membra 99.1 8.7E-08 1.9E-12 68.0 19.0 150 44-214 32-195 (235)
62 KOG2003 TPR repeat-containing 99.1 4E-08 8.8E-13 73.4 16.9 172 22-199 502-708 (840)
63 KOG4318 Bicoid mRNA stability 99.0 4.5E-09 9.8E-14 83.7 11.9 175 31-213 11-264 (1088)
64 PRK11189 lipoprotein NlpI; Pro 99.0 2.5E-07 5.4E-12 67.9 20.4 172 9-189 97-274 (296)
65 PRK10370 formate-dependent nit 99.0 3.6E-07 7.8E-12 62.9 19.2 162 16-194 22-186 (198)
66 KOG1070 rRNA processing protei 99.0 2.3E-07 4.9E-12 77.6 20.7 202 9-215 1457-1664(1710)
67 KOG1840 Kinesin light chain [C 99.0 1.7E-07 3.7E-12 72.5 17.8 171 44-214 198-396 (508)
68 cd05804 StaR_like StaR_like; a 99.0 8.7E-07 1.9E-11 66.8 21.4 197 12-213 8-214 (355)
69 KOG2002 TPR-containing nuclear 99.0 6.5E-08 1.4E-12 78.0 15.6 190 24-216 544-747 (1018)
70 PRK10370 formate-dependent nit 99.0 5.3E-07 1.1E-11 62.1 18.0 151 51-216 22-175 (198)
71 KOG2076 RNA polymerase III tra 99.0 1.2E-06 2.6E-11 70.4 22.0 204 7-213 136-344 (895)
72 COG5010 TadD Flp pilus assembl 98.9 1.5E-06 3.2E-11 60.5 19.4 158 49-210 70-227 (257)
73 KOG1128 Uncharacterized conser 98.9 6.8E-08 1.5E-12 75.7 14.1 193 11-215 425-617 (777)
74 PF12569 NARP1: NMDA receptor- 98.9 2.9E-06 6.2E-11 66.4 23.0 198 11-213 39-290 (517)
75 KOG3060 Uncharacterized conser 98.9 2.8E-06 6E-11 59.0 20.2 190 23-216 25-222 (289)
76 COG5010 TadD Flp pilus assembl 98.9 6.8E-07 1.5E-11 62.2 16.8 160 14-177 70-229 (257)
77 KOG2003 TPR repeat-containing 98.9 1.2E-06 2.7E-11 65.7 18.8 161 11-177 559-720 (840)
78 PRK15359 type III secretion sy 98.9 8.5E-07 1.8E-11 57.9 15.9 95 48-144 27-121 (144)
79 PRK15179 Vi polysaccharide bio 98.9 1.1E-06 2.3E-11 71.2 19.3 133 42-178 83-216 (694)
80 PRK15179 Vi polysaccharide bio 98.9 8.1E-07 1.8E-11 71.8 18.7 138 76-216 82-219 (694)
81 cd05804 StaR_like StaR_like; a 98.9 2.5E-06 5.3E-11 64.4 20.5 157 17-178 50-214 (355)
82 PRK15359 type III secretion sy 98.9 6.6E-07 1.4E-11 58.4 15.0 114 65-186 13-126 (144)
83 PF10037 MRP-S27: Mitochondria 98.8 2.1E-07 4.5E-12 70.5 13.7 125 74-198 60-186 (429)
84 PLN02789 farnesyltranstransfer 98.8 8.8E-06 1.9E-10 60.1 21.9 200 13-217 74-305 (320)
85 PF10037 MRP-S27: Mitochondria 98.8 9E-08 2E-12 72.4 11.6 124 5-128 61-186 (429)
86 KOG2002 TPR-containing nuclear 98.8 4.1E-06 8.8E-11 68.1 20.8 201 9-214 269-481 (1018)
87 PF04733 Coatomer_E: Coatomer 98.8 2.5E-07 5.3E-12 67.3 13.0 153 16-179 108-265 (290)
88 KOG1070 rRNA processing protei 98.8 3.9E-06 8.4E-11 70.6 21.1 199 11-213 1498-1699(1710)
89 TIGR00756 PPR pentatricopeptid 98.8 1.2E-08 2.5E-13 49.4 4.4 33 12-44 2-34 (35)
90 KOG2076 RNA polymerase III tra 98.8 5.5E-06 1.2E-10 66.7 21.3 67 150-216 414-480 (895)
91 PRK14720 transcript cleavage f 98.8 2.2E-06 4.7E-11 70.5 19.5 204 5-216 25-254 (906)
92 PLN02789 farnesyltranstransfer 98.8 1.2E-05 2.7E-10 59.4 21.8 197 12-213 39-249 (320)
93 PF13812 PPR_3: Pentatricopept 98.8 1.8E-08 3.9E-13 48.4 4.2 33 11-43 2-34 (34)
94 PF12569 NARP1: NMDA receptor- 98.8 7E-06 1.5E-10 64.3 20.5 129 82-213 196-333 (517)
95 KOG1173 Anaphase-promoting com 98.8 5.3E-06 1.1E-10 63.7 18.9 208 5-216 239-486 (611)
96 KOG1125 TPR repeat-containing 98.8 3.7E-06 7.9E-11 64.6 17.9 192 18-214 293-527 (579)
97 KOG3081 Vesicle coat complex C 98.7 1.9E-05 4.2E-10 55.3 19.7 124 47-180 110-237 (299)
98 TIGR02552 LcrH_SycD type III s 98.7 2E-06 4.4E-11 55.4 13.9 93 84-178 21-113 (135)
99 TIGR02552 LcrH_SycD type III s 98.7 6.7E-07 1.5E-11 57.7 11.7 112 102-216 5-116 (135)
100 KOG0495 HAT repeat protein [RN 98.7 1.8E-05 4E-10 62.1 20.8 194 13-213 587-781 (913)
101 TIGR00756 PPR pentatricopeptid 98.7 4.4E-08 9.4E-13 47.3 4.5 31 118-148 3-33 (35)
102 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.3E-06 5E-11 64.5 14.8 124 13-142 172-295 (395)
103 KOG0495 HAT repeat protein [RN 98.7 1.7E-05 3.6E-10 62.4 19.4 94 9-105 617-710 (913)
104 PF13812 PPR_3: Pentatricopept 98.7 5.8E-08 1.3E-12 46.6 4.0 32 152-183 3-34 (34)
105 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5.8E-06 1.3E-10 62.4 16.2 122 49-177 173-295 (395)
106 COG4783 Putative Zn-dependent 98.6 1.5E-05 3.3E-10 60.3 18.0 117 56-176 317-434 (484)
107 PF08579 RPM2: Mitochondrial r 98.6 1.1E-06 2.3E-11 53.3 9.8 79 14-92 29-116 (120)
108 COG4783 Putative Zn-dependent 98.6 5.6E-05 1.2E-09 57.4 20.9 138 20-179 316-454 (484)
109 PF09976 TPR_21: Tetratricopep 98.6 5.2E-06 1.1E-10 54.3 13.4 125 83-211 15-144 (145)
110 PF09976 TPR_21: Tetratricopep 98.6 7.9E-06 1.7E-10 53.4 14.0 124 13-139 15-142 (145)
111 KOG3081 Vesicle coat complex C 98.6 2.3E-05 5E-10 55.0 16.4 155 14-179 112-271 (299)
112 KOG1125 TPR repeat-containing 98.6 2.6E-05 5.7E-10 60.2 18.0 194 10-207 319-564 (579)
113 KOG1174 Anaphase-promoting com 98.6 2.6E-05 5.6E-10 58.1 17.2 190 20-216 310-502 (564)
114 PF08579 RPM2: Mitochondrial r 98.6 1.6E-06 3.5E-11 52.6 9.2 77 121-197 31-116 (120)
115 KOG3060 Uncharacterized conser 98.6 7.7E-05 1.7E-09 52.1 18.9 171 6-180 47-221 (289)
116 PF01535 PPR: PPR repeat; Int 98.5 1.6E-07 3.4E-12 43.9 3.6 30 12-41 2-31 (31)
117 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.1E-05 4.5E-10 49.3 13.0 98 12-109 4-105 (119)
118 KOG1915 Cell cycle control pro 98.4 0.00015 3.2E-09 55.2 18.4 188 21-214 84-273 (677)
119 cd00189 TPR Tetratricopeptide 98.4 6.9E-06 1.5E-10 48.8 9.9 92 84-177 4-95 (100)
120 KOG1174 Anaphase-promoting com 98.4 0.0001 2.2E-09 55.1 17.2 25 187-211 440-464 (564)
121 KOG4340 Uncharacterized conser 98.4 7.8E-05 1.7E-09 53.5 15.7 105 1-108 1-106 (459)
122 cd00189 TPR Tetratricopeptide 98.4 1.4E-05 3E-10 47.4 10.9 93 13-107 3-95 (100)
123 PF05843 Suf: Suppressor of fo 98.4 2.4E-05 5.1E-10 57.0 13.6 131 11-144 2-136 (280)
124 PF01535 PPR: PPR repeat; Int 98.4 6.3E-07 1.4E-11 41.8 3.7 18 122-139 7-24 (31)
125 KOG3785 Uncharacterized conser 98.4 3.3E-05 7.2E-10 56.5 13.7 197 14-216 289-492 (557)
126 KOG1128 Uncharacterized conser 98.4 1.8E-05 3.9E-10 62.7 13.1 162 7-178 454-615 (777)
127 KOG2376 Signal recognition par 98.4 0.00017 3.8E-09 56.1 18.0 185 12-212 14-202 (652)
128 PF12895 Apc3: Anaphase-promot 98.4 1.7E-06 3.8E-11 50.9 5.8 81 23-105 2-83 (84)
129 PF06239 ECSIT: Evolutionarily 98.4 1.3E-05 2.9E-10 54.7 10.5 89 77-165 44-153 (228)
130 PF05843 Suf: Suppressor of fo 98.4 2.3E-05 5.1E-10 57.0 12.7 144 46-194 2-149 (280)
131 PRK14720 transcript cleavage f 98.3 7.9E-05 1.7E-09 61.7 16.3 134 40-179 25-178 (906)
132 TIGR02795 tol_pal_ybgF tol-pal 98.3 4E-05 8.6E-10 48.0 12.0 100 81-180 3-106 (119)
133 CHL00033 ycf3 photosystem I as 98.3 5.1E-05 1.1E-09 50.9 13.0 92 83-175 38-138 (168)
134 KOG4162 Predicted calmodulin-b 98.3 0.00077 1.7E-08 54.1 20.8 127 85-215 655-784 (799)
135 PRK10866 outer membrane biogen 98.3 0.00044 9.6E-09 49.3 18.9 57 156-212 181-239 (243)
136 CHL00033 ycf3 photosystem I as 98.3 3.2E-05 6.9E-10 51.9 11.5 115 26-141 15-139 (168)
137 PF06239 ECSIT: Evolutionarily 98.3 1E-05 2.2E-10 55.2 8.8 88 44-131 46-154 (228)
138 PF12895 Apc3: Anaphase-promot 98.3 2.1E-06 4.6E-11 50.5 5.0 81 58-140 2-83 (84)
139 PRK02603 photosystem I assembl 98.3 0.00014 3.1E-09 49.0 14.2 90 45-135 35-126 (172)
140 PRK15363 pathogenicity island 98.2 0.00028 6.2E-09 46.0 14.3 96 47-144 37-132 (157)
141 KOG1915 Cell cycle control pro 98.2 0.0011 2.4E-08 50.7 20.3 202 8-214 320-536 (677)
142 PRK15363 pathogenicity island 98.2 7.2E-05 1.6E-09 48.7 11.4 98 10-109 35-132 (157)
143 KOG0548 Molecular co-chaperone 98.2 0.00048 1E-08 53.0 17.3 199 13-216 227-457 (539)
144 PLN03088 SGT1, suppressor of 98.2 9.5E-05 2.1E-09 55.8 13.6 93 16-110 8-100 (356)
145 PLN03088 SGT1, suppressor of 98.2 0.00012 2.5E-09 55.3 13.9 91 52-144 9-99 (356)
146 PRK04841 transcriptional regul 98.2 0.0013 2.8E-08 56.1 21.3 203 12-214 533-760 (903)
147 KOG1914 mRNA cleavage and poly 98.2 0.0015 3.3E-08 50.7 19.2 151 61-213 347-500 (656)
148 PRK02603 photosystem I assembl 98.2 0.00026 5.7E-09 47.7 14.1 91 10-101 35-127 (172)
149 PF14938 SNAP: Soluble NSF att 98.2 0.00072 1.6E-08 49.4 17.2 192 11-208 36-257 (282)
150 PRK10153 DNA-binding transcrip 98.2 0.0003 6.5E-09 55.6 16.1 63 151-215 421-483 (517)
151 KOG3616 Selective LIM binding 98.1 0.00025 5.3E-09 57.1 14.5 110 86-208 738-847 (1636)
152 KOG4340 Uncharacterized conser 98.1 0.00014 3.1E-09 52.1 11.9 54 56-110 155-208 (459)
153 PF13414 TPR_11: TPR repeat; P 98.1 2E-05 4.4E-10 44.3 6.5 67 149-216 2-69 (69)
154 PRK04841 transcriptional regul 98.1 0.0013 2.8E-08 56.1 20.0 202 12-213 493-719 (903)
155 KOG0985 Vesicle coat protein c 98.1 0.00051 1.1E-08 57.1 16.3 184 11-214 1105-1308(1666)
156 PRK10153 DNA-binding transcrip 98.1 0.00058 1.3E-08 54.0 16.4 142 41-188 333-489 (517)
157 KOG0985 Vesicle coat protein c 98.1 0.00054 1.2E-08 56.9 16.1 181 9-209 1132-1336(1666)
158 KOG4162 Predicted calmodulin-b 98.0 0.0018 4E-08 52.1 17.6 205 6-213 319-541 (799)
159 KOG0553 TPR repeat-containing 98.0 6.2E-05 1.3E-09 53.8 8.8 103 89-196 90-193 (304)
160 KOG1156 N-terminal acetyltrans 98.0 0.002 4.4E-08 50.9 17.4 106 82-190 145-257 (700)
161 KOG2053 Mitochondrial inherita 98.0 0.0037 8E-08 51.3 19.0 73 57-132 55-127 (932)
162 PF12688 TPR_5: Tetratrico pep 98.0 0.0011 2.3E-08 41.7 13.1 88 18-107 9-102 (120)
163 KOG2053 Mitochondrial inherita 98.0 0.0058 1.3E-07 50.2 21.0 196 12-211 43-252 (932)
164 KOG2047 mRNA splicing factor [ 98.0 0.0028 6E-08 50.4 17.4 179 11-197 103-293 (835)
165 PF12688 TPR_5: Tetratrico pep 98.0 0.0012 2.6E-08 41.4 13.3 89 52-142 8-102 (120)
166 KOG1156 N-terminal acetyltrans 98.0 0.0056 1.2E-07 48.6 19.2 202 10-216 41-250 (700)
167 KOG0553 TPR repeat-containing 97.9 0.00034 7.4E-09 50.1 11.1 97 55-155 91-187 (304)
168 KOG1127 TPR repeat-containing 97.9 0.0007 1.5E-08 56.0 14.2 196 11-211 493-697 (1238)
169 PF14559 TPR_19: Tetratricopep 97.9 4.9E-05 1.1E-09 42.6 5.5 49 58-107 4-52 (68)
170 PF14559 TPR_19: Tetratricopep 97.9 7.2E-05 1.6E-09 41.9 6.1 64 21-87 2-65 (68)
171 PF13432 TPR_16: Tetratricopep 97.9 7.4E-05 1.6E-09 41.4 6.1 56 122-178 4-59 (65)
172 PF13432 TPR_16: Tetratricopep 97.9 0.00012 2.6E-09 40.5 6.8 55 18-73 5-59 (65)
173 PF03704 BTAD: Bacterial trans 97.9 0.00066 1.4E-08 44.4 11.3 58 83-141 65-122 (146)
174 PF13525 YfiO: Outer membrane 97.9 0.0034 7.3E-08 43.6 17.3 175 13-206 8-199 (203)
175 KOG3785 Uncharacterized conser 97.9 0.00044 9.6E-09 50.9 11.1 154 25-183 338-494 (557)
176 KOG3616 Selective LIM binding 97.9 0.00037 8.1E-09 56.1 11.3 171 17-209 739-932 (1636)
177 PF03704 BTAD: Bacterial trans 97.8 0.0026 5.6E-08 41.6 13.6 72 117-189 64-140 (146)
178 KOG0624 dsRNA-activated protei 97.8 0.0061 1.3E-07 45.0 18.2 196 16-216 161-372 (504)
179 PF13414 TPR_11: TPR repeat; P 97.8 0.00017 3.6E-09 40.5 6.7 61 46-107 4-65 (69)
180 KOG2047 mRNA splicing factor [ 97.8 0.011 2.3E-07 47.2 19.8 200 11-212 388-613 (835)
181 PF14938 SNAP: Soluble NSF att 97.8 0.0062 1.3E-07 44.6 16.3 93 121-214 120-225 (282)
182 KOG0624 dsRNA-activated protei 97.7 0.0091 2E-07 44.1 20.1 198 10-215 38-253 (504)
183 KOG1127 TPR repeat-containing 97.7 0.0028 6.1E-08 52.7 14.2 164 46-213 493-658 (1238)
184 KOG0548 Molecular co-chaperone 97.7 0.015 3.2E-07 45.2 16.9 152 16-180 304-456 (539)
185 PRK10803 tol-pal system protei 97.7 0.0027 5.9E-08 45.8 12.6 95 48-144 146-246 (263)
186 PF12921 ATP13: Mitochondrial 97.7 0.00078 1.7E-08 42.7 8.7 100 9-128 1-101 (126)
187 COG4235 Cytochrome c biogenesi 97.7 0.0089 1.9E-07 43.2 14.8 101 78-180 154-257 (287)
188 PF12921 ATP13: Mitochondrial 97.7 0.0016 3.5E-08 41.2 9.9 51 146-196 48-99 (126)
189 PF13281 DUF4071: Domain of un 97.6 0.015 3.3E-07 43.9 18.4 75 16-90 147-227 (374)
190 PRK10803 tol-pal system protei 97.6 0.0027 5.8E-08 45.8 11.9 86 126-213 154-245 (263)
191 PF04840 Vps16_C: Vps16, C-ter 97.6 0.014 3.1E-07 43.4 17.2 111 81-211 178-288 (319)
192 PF04840 Vps16_C: Vps16, C-ter 97.6 0.011 2.5E-07 43.9 15.2 112 46-177 178-289 (319)
193 KOG3617 WD40 and TPR repeat-co 97.6 0.0066 1.4E-07 49.9 14.7 193 9-214 756-996 (1416)
194 KOG2796 Uncharacterized conser 97.6 0.006 1.3E-07 43.3 12.6 155 18-180 157-316 (366)
195 COG4235 Cytochrome c biogenesi 97.6 0.0091 2E-07 43.1 13.8 103 112-216 153-258 (287)
196 PF13371 TPR_9: Tetratricopept 97.6 0.0013 2.8E-08 37.2 7.9 21 121-141 35-55 (73)
197 KOG3617 WD40 and TPR repeat-co 97.5 0.013 2.8E-07 48.3 15.1 187 9-214 725-941 (1416)
198 KOG2796 Uncharacterized conser 97.5 0.019 4.2E-07 40.9 15.0 132 83-215 180-316 (366)
199 PF13371 TPR_9: Tetratricopept 97.5 0.00075 1.6E-08 38.3 6.1 63 122-187 2-64 (73)
200 PRK15331 chaperone protein Sic 97.4 0.015 3.2E-07 38.4 13.2 91 52-144 44-134 (165)
201 PF13424 TPR_12: Tetratricopep 97.4 0.00095 2.1E-08 38.4 5.9 60 47-106 7-72 (78)
202 PF13424 TPR_12: Tetratricopep 97.4 0.00082 1.8E-08 38.7 5.5 64 151-214 6-75 (78)
203 PRK15331 chaperone protein Sic 97.3 0.0091 2E-07 39.4 10.5 95 13-109 40-134 (165)
204 KOG3941 Intermediate in Toll s 97.3 0.0034 7.3E-08 45.0 8.8 91 6-96 63-174 (406)
205 KOG3941 Intermediate in Toll s 97.3 0.0037 8E-08 44.8 8.6 90 77-166 64-174 (406)
206 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.013 2.9E-07 45.0 11.7 63 45-109 75-141 (453)
207 COG4700 Uncharacterized protei 97.2 0.034 7.3E-07 37.6 18.7 134 41-176 85-219 (251)
208 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.048 1.1E-06 42.0 14.2 65 8-74 73-141 (453)
209 PF10300 DUF3808: Protein of u 97.2 0.07 1.5E-06 42.1 15.6 163 49-214 192-376 (468)
210 PF13170 DUF4003: Protein of u 97.2 0.057 1.2E-06 39.8 18.9 132 61-194 78-226 (297)
211 KOG1585 Protein required for f 97.2 0.045 9.8E-07 38.6 15.1 194 11-208 32-250 (308)
212 KOG1914 mRNA cleavage and poly 97.1 0.082 1.8E-06 41.6 19.7 151 26-178 347-500 (656)
213 smart00299 CLH Clathrin heavy 97.1 0.032 6.8E-07 36.1 15.4 86 13-106 10-95 (140)
214 PF04053 Coatomer_WDAD: Coatom 97.0 0.022 4.8E-07 44.4 11.7 156 19-209 270-426 (443)
215 COG4700 Uncharacterized protei 97.0 0.056 1.2E-06 36.6 17.3 127 76-206 85-214 (251)
216 PF04053 Coatomer_WDAD: Coatom 96.9 0.045 9.9E-07 42.7 12.6 132 11-175 296-427 (443)
217 PF13512 TPR_18: Tetratricopep 96.9 0.053 1.1E-06 35.0 12.4 82 13-94 13-96 (142)
218 COG4105 ComL DNA uptake lipopr 96.8 0.097 2.1E-06 37.2 18.8 79 12-91 37-117 (254)
219 PF13170 DUF4003: Protein of u 96.8 0.12 2.6E-06 38.1 14.4 150 26-177 78-248 (297)
220 KOG2376 Signal recognition par 96.8 0.18 3.9E-06 40.2 18.7 162 47-212 341-518 (652)
221 KOG2610 Uncharacterized conser 96.8 0.078 1.7E-06 39.3 12.0 151 23-175 116-272 (491)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.15 3.2E-06 39.5 13.8 128 12-143 399-530 (660)
223 PF04184 ST7: ST7 protein; In 96.8 0.18 3.9E-06 39.4 16.4 58 120-177 264-322 (539)
224 KOG2610 Uncharacterized conser 96.7 0.1 2.2E-06 38.7 12.0 152 58-211 116-273 (491)
225 smart00299 CLH Clathrin heavy 96.7 0.078 1.7E-06 34.3 15.9 128 47-197 9-137 (140)
226 COG0457 NrfG FOG: TPR repeat [ 96.7 0.11 2.4E-06 35.9 22.9 205 10-216 59-267 (291)
227 KOG0543 FKBP-type peptidyl-pro 96.7 0.081 1.8E-06 40.0 11.7 123 53-178 216-354 (397)
228 KOG0543 FKBP-type peptidyl-pro 96.7 0.064 1.4E-06 40.5 11.1 124 17-143 215-354 (397)
229 PF09205 DUF1955: Domain of un 96.6 0.08 1.7E-06 33.7 12.4 121 20-145 12-150 (161)
230 COG3629 DnrI DNA-binding trans 96.6 0.052 1.1E-06 39.4 9.9 77 82-159 155-236 (280)
231 PF13929 mRNA_stabil: mRNA sta 96.5 0.19 4.1E-06 36.5 14.2 138 60-197 143-290 (292)
232 KOG4570 Uncharacterized conser 96.5 0.021 4.6E-07 41.7 7.5 103 4-110 58-165 (418)
233 KOG0550 Molecular chaperone (D 96.5 0.1 2.3E-06 39.7 11.3 156 54-214 178-350 (486)
234 COG3629 DnrI DNA-binding trans 96.5 0.061 1.3E-06 39.0 9.9 79 45-124 153-236 (280)
235 KOG1538 Uncharacterized conser 96.5 0.36 7.8E-06 39.2 15.3 83 119-212 751-844 (1081)
236 COG1729 Uncharacterized protei 96.5 0.1 2.2E-06 37.4 10.6 88 127-214 153-244 (262)
237 COG1729 Uncharacterized protei 96.4 0.2 4.4E-06 35.9 12.0 97 12-109 144-244 (262)
238 KOG1130 Predicted G-alpha GTPa 96.4 0.024 5.3E-07 43.0 7.3 98 116-213 236-343 (639)
239 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.35 7.5E-06 37.6 17.6 132 81-215 398-532 (660)
240 PF10300 DUF3808: Protein of u 96.3 0.39 8.3E-06 38.1 16.0 162 13-177 191-374 (468)
241 KOG4570 Uncharacterized conser 96.3 0.13 2.7E-06 37.9 10.2 48 130-177 115-162 (418)
242 KOG0550 Molecular chaperone (D 96.3 0.32 6.9E-06 37.2 12.5 172 19-197 178-369 (486)
243 PF04184 ST7: ST7 protein; In 96.2 0.29 6.3E-06 38.4 12.5 141 15-158 173-339 (539)
244 PF13525 YfiO: Outer membrane 96.1 0.28 6.2E-06 34.0 15.8 153 50-213 10-169 (203)
245 PF13428 TPR_14: Tetratricopep 96.0 0.015 3.2E-07 29.2 3.6 28 188-215 4-31 (44)
246 PF13428 TPR_14: Tetratricopep 95.9 0.045 9.7E-07 27.5 5.1 28 12-39 3-30 (44)
247 KOG4555 TPR repeat-containing 95.9 0.23 5.1E-06 31.6 9.8 92 88-181 51-146 (175)
248 PF09205 DUF1955: Domain of un 95.9 0.25 5.3E-06 31.6 9.1 67 44-111 85-151 (161)
249 PRK10866 outer membrane biogen 95.8 0.43 9.3E-06 34.2 15.9 82 44-126 31-115 (243)
250 COG0457 NrfG FOG: TPR repeat [ 95.8 0.38 8.3E-06 33.1 21.4 193 23-216 36-233 (291)
251 KOG1585 Protein required for f 95.8 0.46 9.9E-06 33.8 11.9 117 57-174 122-251 (308)
252 COG3898 Uncharacterized membra 95.7 0.64 1.4E-05 35.5 19.2 157 22-183 132-296 (531)
253 PF00637 Clathrin: Region in C 95.7 0.011 2.4E-07 38.4 2.9 82 52-140 14-95 (143)
254 KOG4555 TPR repeat-containing 95.7 0.28 6.1E-06 31.3 10.9 92 54-146 52-146 (175)
255 KOG2041 WD40 repeat protein [G 95.7 0.63 1.4E-05 38.3 12.7 56 146-210 848-903 (1189)
256 KOG2114 Vacuolar assembly/sort 95.7 0.42 9.1E-06 39.8 11.9 102 63-176 415-516 (933)
257 PF10602 RPN7: 26S proteasome 95.7 0.4 8.6E-06 32.5 11.0 112 31-142 21-140 (177)
258 COG3118 Thioredoxin domain-con 95.6 0.57 1.2E-05 34.2 14.3 150 53-205 142-292 (304)
259 PF13762 MNE1: Mitochondrial s 95.6 0.25 5.5E-06 32.1 8.7 102 32-133 24-133 (145)
260 PF13176 TPR_7: Tetratricopept 95.6 0.04 8.7E-07 26.3 3.9 23 48-70 2-24 (36)
261 PF13176 TPR_7: Tetratricopept 95.6 0.029 6.3E-07 26.8 3.4 25 188-212 2-26 (36)
262 cd00923 Cyt_c_Oxidase_Va Cytoc 95.6 0.18 4E-06 30.1 7.1 62 25-87 22-83 (103)
263 PF07035 Mic1: Colon cancer-as 95.5 0.42 9.1E-06 32.0 14.8 33 31-63 15-47 (167)
264 PF10602 RPN7: 26S proteasome 95.5 0.45 9.8E-06 32.3 11.8 95 81-177 37-140 (177)
265 PF07035 Mic1: Colon cancer-as 95.5 0.44 9.5E-06 31.9 15.0 132 66-211 15-146 (167)
266 PF00515 TPR_1: Tetratricopept 95.5 0.044 9.5E-07 25.6 3.8 30 187-216 3-32 (34)
267 KOG2280 Vacuolar assembly/sort 95.3 0.4 8.6E-06 39.4 10.4 113 78-209 682-794 (829)
268 PF13512 TPR_18: Tetratricopep 95.2 0.5 1.1E-05 30.6 11.2 80 52-132 17-99 (142)
269 PF07719 TPR_2: Tetratricopept 95.1 0.063 1.4E-06 24.9 3.8 30 187-216 3-32 (34)
270 cd00923 Cyt_c_Oxidase_Va Cytoc 95.1 0.37 7.9E-06 28.8 7.3 64 130-194 22-85 (103)
271 PF09613 HrpB1_HrpK: Bacterial 95.0 0.64 1.4E-05 30.8 11.9 55 53-109 18-73 (160)
272 KOG2114 Vacuolar assembly/sort 94.9 2 4.2E-05 36.2 13.2 177 12-211 336-516 (933)
273 PF02284 COX5A: Cytochrome c o 94.9 0.47 1E-05 28.7 9.3 60 28-88 28-87 (108)
274 KOG2041 WD40 repeat protein [G 94.8 0.96 2.1E-05 37.3 11.2 92 112-213 849-951 (1189)
275 PF13929 mRNA_stabil: mRNA sta 94.7 1.2 2.6E-05 32.5 13.6 156 4-159 106-287 (292)
276 PF02284 COX5A: Cytochrome c o 94.7 0.19 4.2E-06 30.3 5.5 72 123-195 16-89 (108)
277 KOG2280 Vacuolar assembly/sort 94.6 0.79 1.7E-05 37.8 10.3 114 43-175 682-795 (829)
278 PF00637 Clathrin: Region in C 94.5 0.013 2.9E-07 38.0 0.5 129 15-165 12-140 (143)
279 COG1747 Uncharacterized N-term 94.5 2 4.3E-05 34.2 20.4 180 9-196 65-250 (711)
280 COG3118 Thioredoxin domain-con 94.2 1.6 3.4E-05 32.1 17.4 142 19-164 143-286 (304)
281 PF00515 TPR_1: Tetratricopept 94.2 0.17 3.7E-06 23.4 4.0 22 50-71 6-27 (34)
282 PF13181 TPR_8: Tetratricopept 94.2 0.13 2.9E-06 23.8 3.6 30 187-216 3-32 (34)
283 PF11207 DUF2989: Protein of u 94.0 1.2 2.5E-05 30.8 8.9 75 60-135 121-198 (203)
284 PF13281 DUF4071: Domain of un 94.0 2.1 4.6E-05 32.7 15.2 171 44-216 140-336 (374)
285 PF13374 TPR_10: Tetratricopep 93.9 0.19 4.1E-06 24.4 4.0 25 12-36 4-28 (42)
286 PF11207 DUF2989: Protein of u 93.8 1.1 2.4E-05 30.9 8.5 79 125-205 117-198 (203)
287 PF02259 FAT: FAT domain; Int 93.7 2.3 4.9E-05 32.1 15.2 192 16-213 4-212 (352)
288 KOG1538 Uncharacterized conser 93.7 3.3 7.2E-05 34.1 13.4 24 8-31 554-577 (1081)
289 KOG1130 Predicted G-alpha GTPa 93.5 0.21 4.5E-06 38.3 5.1 130 13-142 198-342 (639)
290 PF07163 Pex26: Pex26 protein; 93.4 2.3 4.9E-05 31.1 10.0 88 16-103 89-181 (309)
291 PF13374 TPR_10: Tetratricopep 93.3 0.32 6.9E-06 23.6 4.3 25 82-106 4-28 (42)
292 KOG4234 TPR repeat-containing 93.3 1.6 3.6E-05 30.2 8.6 90 89-180 104-198 (271)
293 COG4455 ImpE Protein of avirul 93.3 1.7 3.7E-05 30.5 8.8 76 47-123 3-80 (273)
294 PF13431 TPR_17: Tetratricopep 93.3 0.089 1.9E-06 24.7 2.0 17 82-98 15-31 (34)
295 PF07719 TPR_2: Tetratricopept 93.1 0.33 7.2E-06 22.3 4.0 17 54-70 10-26 (34)
296 PF08631 SPO22: Meiosis protei 93.1 2.6 5.6E-05 30.9 20.5 162 20-185 3-192 (278)
297 KOG4648 Uncharacterized conser 93.0 0.36 7.9E-06 36.1 5.6 54 88-142 105-158 (536)
298 PF09613 HrpB1_HrpK: Bacterial 93.0 1.8 3.9E-05 28.7 11.7 113 16-136 16-130 (160)
299 PF13431 TPR_17: Tetratricopep 92.8 0.2 4.4E-06 23.5 2.9 22 44-65 12-33 (34)
300 COG4649 Uncharacterized protei 92.7 2.1 4.6E-05 28.9 13.1 122 57-178 70-195 (221)
301 PF07079 DUF1347: Protein of u 92.7 3.9 8.5E-05 32.1 17.1 192 20-216 89-329 (549)
302 PRK15180 Vi polysaccharide bio 92.7 3.3 7.1E-05 32.8 10.4 127 14-144 293-420 (831)
303 KOG0276 Vesicle coat complex C 92.6 4 8.7E-05 33.3 10.9 132 11-175 615-746 (794)
304 PRK11906 transcriptional regul 92.5 4.3 9.4E-05 31.9 15.7 79 97-178 321-400 (458)
305 KOG0276 Vesicle coat complex C 92.2 5.6 0.00012 32.5 11.6 97 91-208 648-744 (794)
306 KOG1920 IkappaB kinase complex 92.1 7.9 0.00017 34.2 13.5 115 77-211 932-1052(1265)
307 COG1747 Uncharacterized N-term 92.0 5.4 0.00012 31.9 16.0 165 43-214 64-234 (711)
308 PHA02875 ankyrin repeat protei 91.9 4.5 9.7E-05 31.5 10.9 62 3-68 23-88 (413)
309 PRK11906 transcriptional regul 91.9 5.2 0.00011 31.5 16.6 160 11-175 252-432 (458)
310 PF10579 Rapsyn_N: Rapsyn N-te 91.9 1.1 2.5E-05 25.7 5.5 47 162-208 18-66 (80)
311 PF07163 Pex26: Pex26 protein; 91.7 4 8.7E-05 29.8 10.0 126 13-138 38-181 (309)
312 COG4455 ImpE Protein of avirul 91.5 2.8 6.1E-05 29.5 8.1 77 12-89 3-81 (273)
313 KOG1920 IkappaB kinase complex 91.5 9.5 0.00021 33.8 15.1 22 189-210 1003-1024(1265)
314 COG3947 Response regulator con 91.4 2.3 5.1E-05 31.2 7.8 60 47-107 281-340 (361)
315 PF08631 SPO22: Meiosis protei 91.3 4.5 9.8E-05 29.7 21.8 198 13-212 39-273 (278)
316 COG4649 Uncharacterized protei 91.2 3.4 7.4E-05 28.0 13.3 121 92-212 70-194 (221)
317 TIGR03504 FimV_Cterm FimV C-te 91.2 0.68 1.5E-05 23.3 3.7 25 16-40 5-29 (44)
318 PF13174 TPR_6: Tetratricopept 90.4 0.48 1E-05 21.5 2.8 25 190-214 5-29 (33)
319 KOG4077 Cytochrome c oxidase, 90.4 3.2 7E-05 26.4 7.1 36 37-72 76-111 (149)
320 KOG4234 TPR repeat-containing 89.9 5 0.00011 28.0 9.0 88 55-144 105-197 (271)
321 PF13181 TPR_8: Tetratricopept 89.8 1.2 2.5E-05 20.4 4.3 25 83-107 4-28 (34)
322 PF09797 NatB_MDM20: N-acetylt 89.7 4 8.6E-05 31.3 8.6 128 84-214 184-315 (365)
323 KOG1550 Extracellular protein 89.4 11 0.00023 30.9 17.6 179 26-212 228-424 (552)
324 KOG4648 Uncharacterized conser 89.4 3.5 7.6E-05 31.2 7.6 88 53-143 105-193 (536)
325 PF10579 Rapsyn_N: Rapsyn N-te 89.2 2.2 4.8E-05 24.5 5.1 46 57-102 18-65 (80)
326 KOG4077 Cytochrome c oxidase, 89.2 2.1 4.5E-05 27.2 5.4 60 133-193 67-126 (149)
327 COG3898 Uncharacterized membra 89.0 9 0.0002 29.7 20.6 122 20-144 164-292 (531)
328 PF11846 DUF3366: Domain of un 88.9 4.3 9.3E-05 27.9 7.6 33 146-178 140-172 (193)
329 smart00028 TPR Tetratricopepti 88.9 0.8 1.7E-05 19.9 3.0 26 188-213 4-29 (34)
330 COG2976 Uncharacterized protei 88.8 6 0.00013 27.3 11.7 92 87-180 96-189 (207)
331 TIGR03504 FimV_Cterm FimV C-te 88.7 1.5 3.3E-05 22.0 3.9 22 121-142 5-26 (44)
332 KOG1550 Extracellular protein 88.6 12 0.00026 30.6 14.5 154 20-180 259-427 (552)
333 PF07079 DUF1347: Protein of u 88.6 11 0.00023 29.9 19.1 196 10-211 298-521 (549)
334 KOG1941 Acetylcholine receptor 88.1 10 0.00022 29.1 12.3 131 82-212 124-273 (518)
335 PRK15180 Vi polysaccharide bio 87.6 13 0.00028 29.7 13.6 120 55-178 299-419 (831)
336 PF11848 DUF3368: Domain of un 87.1 2.8 6E-05 21.5 4.4 31 162-192 14-44 (48)
337 COG0735 Fur Fe2+/Zn2+ uptake r 87.0 1.7 3.7E-05 28.4 4.4 66 31-97 7-72 (145)
338 PF11848 DUF3368: Domain of un 86.6 3 6.5E-05 21.4 4.9 31 22-52 14-44 (48)
339 PF02259 FAT: FAT domain; Int 86.5 12 0.00026 28.2 16.1 64 115-178 146-212 (352)
340 KOG4567 GTPase-activating prot 86.2 8.5 0.00018 28.7 7.8 43 66-108 264-306 (370)
341 KOG1586 Protein required for f 85.5 11 0.00024 27.0 17.2 162 18-180 42-225 (288)
342 TIGR02561 HrpB1_HrpK type III 85.5 8.2 0.00018 25.4 11.2 68 56-128 21-89 (153)
343 PF07575 Nucleopor_Nup85: Nup8 85.4 5.9 0.00013 32.5 7.6 32 162-193 507-538 (566)
344 PF11663 Toxin_YhaV: Toxin wit 85.1 1.4 3.1E-05 28.2 3.1 33 126-160 106-138 (140)
345 KOG1941 Acetylcholine receptor 84.8 16 0.00035 28.1 12.3 195 20-214 16-235 (518)
346 COG5159 RPN6 26S proteasome re 84.7 14 0.0003 27.4 10.3 24 154-177 129-152 (421)
347 PF13762 MNE1: Mitochondrial s 84.6 8.9 0.00019 25.1 10.8 93 71-163 28-128 (145)
348 KOG1586 Protein required for f 84.4 13 0.00028 26.7 12.1 53 129-181 128-185 (288)
349 COG0735 Fur Fe2+/Zn2+ uptake r 83.8 9.8 0.00021 24.9 7.4 65 67-132 8-72 (145)
350 PF11846 DUF3366: Domain of un 83.7 8.7 0.00019 26.4 6.9 60 50-109 113-173 (193)
351 TIGR02508 type_III_yscG type I 83.6 7.8 0.00017 23.6 7.0 51 124-180 48-98 (115)
352 PF14853 Fis1_TPR_C: Fis1 C-te 82.6 2.5 5.5E-05 22.2 3.0 26 191-216 7-32 (53)
353 TIGR02561 HrpB1_HrpK type III 82.3 12 0.00025 24.7 10.6 54 20-75 20-74 (153)
354 KOG0890 Protein kinase of the 81.9 41 0.00088 32.6 11.5 150 50-207 1388-1540(2382)
355 KOG1464 COP9 signalosome, subu 81.4 19 0.00041 26.5 15.4 202 3-205 19-251 (440)
356 COG5108 RPO41 Mitochondrial DN 81.4 19 0.0004 30.2 8.6 91 15-108 33-131 (1117)
357 PF14689 SPOB_a: Sensor_kinase 81.4 6.7 0.00015 21.3 5.1 20 86-105 29-48 (62)
358 COG4785 NlpI Lipoprotein NlpI, 81.2 17 0.00037 25.9 14.7 84 23-109 78-162 (297)
359 PF06552 TOM20_plant: Plant sp 81.0 15 0.00032 25.1 6.8 89 13-109 31-136 (186)
360 COG5108 RPO41 Mitochondrial DN 80.9 22 0.00047 29.8 8.8 74 50-126 33-114 (1117)
361 PF11663 Toxin_YhaV: Toxin wit 80.9 2.3 4.9E-05 27.3 2.9 25 98-124 113-137 (140)
362 cd00280 TRFH Telomeric Repeat 80.1 17 0.00036 25.0 7.5 24 85-108 116-139 (200)
363 KOG4507 Uncharacterized conser 79.9 32 0.00069 28.5 9.3 28 81-108 677-704 (886)
364 PF14689 SPOB_a: Sensor_kinase 79.9 6.5 0.00014 21.4 4.2 23 155-177 28-50 (62)
365 PF10345 Cohesin_load: Cohesin 78.8 37 0.00081 28.3 17.6 183 29-212 40-252 (608)
366 PRK10564 maltose regulon perip 78.7 5.3 0.00011 29.6 4.5 39 151-189 258-296 (303)
367 PF11817 Foie-gras_1: Foie gra 78.4 19 0.00041 26.0 7.4 60 117-176 180-244 (247)
368 PRK10564 maltose regulon perip 78.1 6.8 0.00015 29.0 4.9 30 118-147 260-289 (303)
369 cd00280 TRFH Telomeric Repeat 78.1 19 0.00042 24.7 7.9 41 120-163 116-156 (200)
370 KOG0545 Aryl-hydrocarbon recep 77.9 24 0.00052 25.6 8.7 57 158-215 238-294 (329)
371 PF10366 Vps39_1: Vacuolar sor 77.9 14 0.0003 22.8 8.0 26 153-178 42-67 (108)
372 KOG2063 Vacuolar assembly/sort 77.2 49 0.0011 28.9 10.3 165 47-211 506-710 (877)
373 PF14669 Asp_Glu_race_2: Putat 76.9 8.8 0.00019 26.5 4.8 66 3-68 1-74 (233)
374 COG4785 NlpI Lipoprotein NlpI, 76.7 25 0.00053 25.1 15.3 29 81-109 100-128 (297)
375 COG3947 Response regulator con 76.4 29 0.00064 25.9 16.4 160 26-188 149-356 (361)
376 PF03745 DUF309: Domain of unk 76.0 11 0.00023 20.6 5.7 33 21-53 10-42 (62)
377 COG4105 ComL DNA uptake lipopr 76.0 27 0.00059 25.3 14.7 168 45-213 35-232 (254)
378 PF11838 ERAP1_C: ERAP1-like C 75.6 31 0.00067 25.8 19.0 109 96-208 146-260 (324)
379 PF10345 Cohesin_load: Cohesin 75.2 47 0.001 27.7 16.6 166 11-177 60-252 (608)
380 PF09454 Vps23_core: Vps23 cor 74.9 9.7 0.00021 21.0 4.0 32 44-75 7-38 (65)
381 COG2976 Uncharacterized protei 74.8 26 0.00055 24.4 13.5 127 12-145 56-189 (207)
382 KOG0890 Protein kinase of the 74.7 72 0.0016 31.2 11.0 151 15-173 1388-1541(2382)
383 PF11838 ERAP1_C: ERAP1-like C 74.1 34 0.00074 25.5 13.9 132 26-162 146-287 (324)
384 TIGR02508 type_III_yscG type I 73.7 18 0.00039 22.1 7.6 50 90-145 49-98 (115)
385 cd08819 CARD_MDA5_2 Caspase ac 73.4 16 0.00035 21.5 7.5 39 162-205 48-86 (88)
386 KOG2659 LisH motif-containing 73.3 30 0.00066 24.6 9.7 98 6-105 22-128 (228)
387 cd07153 Fur_like Ferric uptake 73.0 11 0.00025 23.2 4.6 42 55-96 10-51 (116)
388 cd08819 CARD_MDA5_2 Caspase ac 72.8 17 0.00037 21.5 7.0 14 129-142 50-63 (88)
389 PHA02875 ankyrin repeat protei 72.3 44 0.00096 26.1 11.9 80 17-104 6-89 (413)
390 PF09797 NatB_MDM20: N-acetylt 72.3 42 0.00092 25.8 8.3 68 50-118 185-255 (365)
391 PF06552 TOM20_plant: Plant sp 72.1 29 0.00063 23.8 9.8 13 81-93 70-82 (186)
392 PF01475 FUR: Ferric uptake re 72.0 14 0.0003 23.1 4.8 47 50-96 12-58 (120)
393 PRK11639 zinc uptake transcrip 71.9 28 0.0006 23.5 7.3 62 105-167 16-77 (169)
394 PF04090 RNA_pol_I_TF: RNA pol 71.8 31 0.00067 24.0 6.9 61 116-177 42-103 (199)
395 KOG0403 Neoplastic transformat 71.7 50 0.0011 26.4 8.8 59 85-144 514-572 (645)
396 COG2909 MalT ATP-dependent tra 71.6 68 0.0015 27.9 17.4 157 20-179 468-647 (894)
397 KOG4567 GTPase-activating prot 71.5 41 0.00089 25.3 7.5 70 135-209 263-342 (370)
398 PF08424 NRDE-2: NRDE-2, neces 71.4 42 0.00091 25.4 16.4 116 98-215 49-184 (321)
399 PF09670 Cas_Cas02710: CRISPR- 71.2 47 0.001 25.9 10.3 57 17-74 138-198 (379)
400 cd07153 Fur_like Ferric uptake 70.8 13 0.00029 22.9 4.5 48 120-167 5-52 (116)
401 KOG3364 Membrane protein invol 70.5 18 0.0004 23.5 4.9 68 112-179 29-100 (149)
402 PRK11639 zinc uptake transcrip 70.4 30 0.00065 23.3 7.5 61 36-97 17-77 (169)
403 PF09454 Vps23_core: Vps23 cor 69.8 17 0.00036 20.1 4.2 52 6-58 4-55 (65)
404 KOG2066 Vacuolar assembly/sort 69.7 72 0.0016 27.4 14.2 102 17-127 363-467 (846)
405 PF07575 Nucleopor_Nup85: Nup8 69.2 63 0.0014 26.8 9.0 62 114-177 404-465 (566)
406 PRK09462 fur ferric uptake reg 68.7 30 0.00065 22.6 7.4 60 36-96 8-68 (148)
407 PF12862 Apc5: Anaphase-promot 68.6 22 0.00048 21.1 6.4 54 20-73 8-69 (94)
408 KOG3807 Predicted membrane pro 68.5 51 0.0011 25.2 7.6 59 86-144 281-340 (556)
409 PF12796 Ank_2: Ankyrin repeat 68.4 20 0.00044 20.6 6.4 12 21-32 5-16 (89)
410 PF11817 Foie-gras_1: Foie gra 67.8 43 0.00094 24.2 8.1 59 83-141 181-244 (247)
411 PF02847 MA3: MA3 domain; Int 66.4 27 0.0006 21.3 6.5 20 52-71 9-28 (113)
412 PF01475 FUR: Ferric uptake re 66.3 12 0.00025 23.5 3.6 50 12-61 9-58 (120)
413 KOG2063 Vacuolar assembly/sort 66.2 93 0.002 27.4 16.3 188 11-198 505-745 (877)
414 PF14669 Asp_Glu_race_2: Putat 65.9 43 0.00092 23.4 14.6 161 39-209 2-205 (233)
415 PF04090 RNA_pol_I_TF: RNA pol 65.7 43 0.00094 23.4 7.3 28 12-39 43-70 (199)
416 PF15297 CKAP2_C: Cytoskeleton 65.6 59 0.0013 24.9 9.4 64 131-196 119-186 (353)
417 KOG2297 Predicted translation 65.5 57 0.0012 24.7 14.5 72 88-169 263-340 (412)
418 PRK09462 fur ferric uptake reg 65.5 35 0.00077 22.3 7.1 62 104-166 6-68 (148)
419 KOG0376 Serine-threonine phosp 65.0 27 0.00058 27.8 5.7 103 17-125 11-115 (476)
420 KOG1258 mRNA processing protei 64.9 79 0.0017 26.1 18.7 185 8-199 295-489 (577)
421 PF10475 DUF2450: Protein of u 64.0 58 0.0013 24.2 9.0 24 112-135 194-217 (291)
422 PF10255 Paf67: RNA polymerase 64.0 70 0.0015 25.2 8.1 60 48-107 125-191 (404)
423 COG5159 RPN6 26S proteasome re 63.7 60 0.0013 24.3 10.8 22 189-210 129-150 (421)
424 PF08424 NRDE-2: NRDE-2, neces 63.3 63 0.0014 24.4 16.4 119 61-181 47-185 (321)
425 PF12862 Apc5: Anaphase-promot 62.6 30 0.00065 20.5 6.7 52 56-107 9-68 (94)
426 PRK09857 putative transposase; 62.4 63 0.0014 24.1 8.5 66 83-149 209-274 (292)
427 KOG2396 HAT (Half-A-TPR) repea 62.3 84 0.0018 25.5 11.6 96 61-159 87-183 (568)
428 PF10475 DUF2450: Protein of u 62.2 63 0.0014 24.0 8.4 110 86-206 104-218 (291)
429 KOG0687 26S proteasome regulat 62.1 69 0.0015 24.4 13.0 135 5-143 65-209 (393)
430 PF03745 DUF309: Domain of unk 61.3 25 0.00054 19.1 5.7 47 56-102 10-61 (62)
431 PF07720 TPR_3: Tetratricopept 60.6 18 0.00039 17.2 3.8 25 190-214 6-32 (36)
432 KOG4642 Chaperone-dependent E3 60.5 63 0.0014 23.5 10.5 119 55-177 20-144 (284)
433 KOG0376 Serine-threonine phosp 59.7 55 0.0012 26.2 6.6 103 52-160 11-115 (476)
434 PF10366 Vps39_1: Vacuolar sor 59.0 40 0.00088 20.8 8.5 26 83-108 42-67 (108)
435 PRK12798 chemotaxis protein; R 58.4 91 0.002 24.6 16.6 156 58-214 125-286 (421)
436 PF07064 RIC1: RIC1; InterPro 58.3 71 0.0015 23.4 15.3 62 155-216 184-251 (258)
437 PRK09857 putative transposase; 57.9 77 0.0017 23.7 8.5 66 118-184 209-274 (292)
438 PRK09687 putative lyase; Provi 57.8 75 0.0016 23.5 20.8 120 79-212 141-261 (280)
439 KOG1839 Uncharacterized protei 57.4 1.6E+02 0.0034 27.1 10.9 153 57-209 944-1123(1236)
440 KOG0686 COP9 signalosome, subu 57.3 94 0.002 24.5 13.1 62 47-108 152-215 (466)
441 smart00386 HAT HAT (Half-A-TPR 57.3 17 0.00036 15.8 3.9 15 130-144 2-16 (33)
442 KOG1464 COP9 signalosome, subu 56.9 79 0.0017 23.5 15.3 157 13-170 68-251 (440)
443 PF10155 DUF2363: Uncharacteri 56.8 49 0.0011 21.1 10.2 111 25-142 4-125 (126)
444 KOG0686 COP9 signalosome, subu 56.7 97 0.0021 24.5 13.7 174 11-192 151-351 (466)
445 COG4259 Uncharacterized protei 56.2 44 0.00096 20.4 5.4 57 131-189 53-109 (121)
446 PF09868 DUF2095: Uncharacteri 56.1 48 0.001 20.7 5.5 24 52-75 68-91 (128)
447 PF02607 B12-binding_2: B12 bi 56.0 22 0.00047 20.1 3.2 36 22-57 13-48 (79)
448 KOG4507 Uncharacterized conser 55.3 1.3E+02 0.0027 25.3 10.1 136 43-180 569-706 (886)
449 cd08318 Death_NMPP84 Death dom 55.2 38 0.00082 19.9 4.1 43 164-208 44-86 (86)
450 KOG2659 LisH motif-containing 54.9 76 0.0016 22.7 8.8 99 41-141 22-129 (228)
451 KOG1308 Hsp70-interacting prot 54.7 13 0.00028 28.2 2.5 90 57-149 126-216 (377)
452 COG5187 RPN7 26S proteasome re 54.5 91 0.002 23.5 11.2 132 7-142 78-219 (412)
453 PF02847 MA3: MA3 domain; Int 54.4 48 0.001 20.2 7.6 63 13-77 5-69 (113)
454 PF09868 DUF2095: Uncharacteri 54.1 52 0.0011 20.6 5.0 25 121-145 67-91 (128)
455 KOG4642 Chaperone-dependent E3 53.9 84 0.0018 22.9 10.4 120 18-141 18-143 (284)
456 PHA02798 ankyrin-like protein; 53.7 1.2E+02 0.0025 24.5 8.9 116 31-149 52-175 (489)
457 PF00531 Death: Death domain; 53.2 36 0.00079 19.3 3.9 42 166-209 40-81 (83)
458 KOG1839 Uncharacterized protei 53.1 1.9E+02 0.0041 26.7 11.7 157 18-174 940-1123(1236)
459 KOG1308 Hsp70-interacting prot 53.0 25 0.00054 26.8 3.7 115 92-211 126-241 (377)
460 PF02184 HAT: HAT (Half-A-TPR) 52.9 24 0.00052 16.4 2.6 22 26-49 3-24 (32)
461 PF04762 IKI3: IKI3 family; I 52.8 58 0.0013 28.9 6.4 88 47-140 814-926 (928)
462 KOG4279 Serine/threonine prote 52.7 1.6E+02 0.0034 25.6 11.2 181 29-216 182-397 (1226)
463 PF04910 Tcf25: Transcriptiona 52.1 1.1E+02 0.0024 23.7 17.5 57 122-178 110-167 (360)
464 PF00244 14-3-3: 14-3-3 protei 51.7 88 0.0019 22.5 12.3 60 14-73 5-65 (236)
465 COG4259 Uncharacterized protei 51.4 55 0.0012 20.0 6.5 41 65-105 57-97 (121)
466 COG2405 Predicted nucleic acid 50.8 43 0.00092 21.9 4.0 44 46-90 111-154 (157)
467 KOG0687 26S proteasome regulat 50.6 1.1E+02 0.0024 23.4 13.6 21 120-140 109-129 (393)
468 PF11768 DUF3312: Protein of u 50.5 1.4E+02 0.0031 24.6 11.0 23 15-37 413-435 (545)
469 PRK14700 recombination factor 50.2 1.1E+02 0.0023 23.1 10.6 64 48-111 126-197 (300)
470 COG5187 RPN7 26S proteasome re 50.2 1.1E+02 0.0023 23.1 11.3 26 81-106 116-141 (412)
471 PF06957 COPI_C: Coatomer (COP 50.1 76 0.0016 25.2 6.0 110 90-216 214-331 (422)
472 PRK10941 hypothetical protein; 49.1 1.1E+02 0.0023 22.7 10.0 80 118-198 184-264 (269)
473 COG2178 Predicted RNA-binding 48.7 91 0.002 21.8 8.1 18 126-143 132-149 (204)
474 PF12816 Vps8: Golgi CORVET co 48.7 33 0.00072 23.8 3.7 53 11-68 23-75 (196)
475 smart00638 LPD_N Lipoprotein N 48.6 1.6E+02 0.0034 24.5 19.2 60 11-75 311-370 (574)
476 PF06855 DUF1250: Protein of u 48.5 36 0.00077 17.2 2.9 30 6-35 11-40 (46)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 48.3 70 0.0015 20.3 8.4 16 123-138 107-122 (126)
478 PRK10941 hypothetical protein; 48.1 1.1E+02 0.0024 22.6 10.0 61 152-214 183-244 (269)
479 PF08311 Mad3_BUB1_I: Mad3/BUB 48.0 71 0.0015 20.3 9.4 44 62-105 80-124 (126)
480 COG2405 Predicted nucleic acid 48.0 59 0.0013 21.3 4.3 45 80-125 110-154 (157)
481 PF08542 Rep_fac_C: Replicatio 47.7 55 0.0012 19.0 6.2 31 117-148 7-37 (89)
482 KOG2066 Vacuolar assembly/sort 47.5 1.9E+02 0.0041 25.1 9.2 101 53-162 364-467 (846)
483 KOG0991 Replication factor C, 46.6 1.1E+02 0.0024 22.3 12.5 117 20-141 169-299 (333)
484 COG0790 FOG: TPR repeat, SEL1 46.5 1.2E+02 0.0025 22.4 19.2 151 22-181 53-222 (292)
485 PHA02537 M terminase endonucle 46.5 1.1E+02 0.0024 22.0 9.7 30 83-112 86-115 (230)
486 PF15297 CKAP2_C: Cytoskeleton 46.4 1.3E+02 0.0029 23.1 9.0 64 96-161 119-186 (353)
487 KOG3677 RNA polymerase I-assoc 46.3 1.5E+02 0.0032 23.6 6.9 182 14-197 205-396 (525)
488 PF10155 DUF2363: Uncharacteri 46.2 77 0.0017 20.3 12.7 46 167-212 80-125 (126)
489 PF11768 DUF3312: Protein of u 46.2 1.7E+02 0.0037 24.2 11.5 62 48-109 411-473 (545)
490 KOG2062 26S proteasome regulat 46.1 2E+02 0.0043 24.9 10.8 16 53-68 67-82 (929)
491 KOG2034 Vacuolar sorting prote 45.8 2.1E+02 0.0046 25.2 14.3 169 18-210 366-555 (911)
492 PF13934 ELYS: Nuclear pore co 45.6 1.1E+02 0.0024 21.8 10.7 119 10-137 76-198 (226)
493 PF09986 DUF2225: Uncharacteri 45.5 1.1E+02 0.0023 21.7 9.5 93 125-217 87-197 (214)
494 KOG2422 Uncharacterized conser 45.1 1.8E+02 0.004 24.2 15.9 56 122-177 349-405 (665)
495 smart00164 TBC Domain in Tre-2 44.8 95 0.0021 21.2 5.6 82 25-110 108-197 (199)
496 PRK10292 hypothetical protein; 44.6 24 0.00053 19.3 1.9 41 31-71 20-60 (69)
497 KOG4521 Nuclear pore complex, 44.6 2.6E+02 0.0056 25.8 13.2 165 50-216 925-1134(1480)
498 PHA02798 ankyrin-like protein; 44.3 1.6E+02 0.0034 23.8 7.4 85 28-114 87-175 (489)
499 KOG1166 Mitotic checkpoint ser 44.1 1.2E+02 0.0027 27.1 6.9 57 57-113 90-147 (974)
500 PF09986 DUF2225: Uncharacteri 44.0 1.1E+02 0.0025 21.6 11.1 104 20-123 87-208 (214)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-43 Score=285.87 Aligned_cols=209 Identities=21% Similarity=0.301 Sum_probs=99.6
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHh--cCCCcch
Q 035645 3 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK--LGSCADV 80 (217)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 80 (217)
+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444432 3344444
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
.+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 161 GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-43 Score=285.79 Aligned_cols=214 Identities=21% Similarity=0.305 Sum_probs=201.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch
Q 035645 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV 80 (217)
Q Consensus 1 M~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (217)
|++.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVE--DGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
.+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999976 57889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 159 MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999998764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=262.15 Aligned_cols=200 Identities=18% Similarity=0.229 Sum_probs=137.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
++|++.|++++|.++|++|. .||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 66666666666666666664 24666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 168 EAANYLMEMTE-MGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 168 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
+|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 77777777764 566777777777777777777777777766554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=260.22 Aligned_cols=205 Identities=20% Similarity=0.220 Sum_probs=188.9
Q ss_pred CCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh
Q 035645 2 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS 81 (217)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (217)
.+.|+.||..+||+++.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 356889999999999999999999999999999985 4588999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 161 (217)
||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+||.||.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886 468899999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-37 Score=251.93 Aligned_cols=204 Identities=18% Similarity=0.192 Sum_probs=178.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.+
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 888888888888888888885 4678889999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 167 VEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|+.|.+.
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999887653
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-36 Score=247.77 Aligned_cols=203 Identities=19% Similarity=0.220 Sum_probs=156.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
+||..+||++|.+|++.|++++|.++|++|...|+.||..||+.++.+|+..++++.+.+++..+.+.|+.||..+|+.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 47888899999999999999999999998888888888888888887777777777777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|.+|...|+.||..||+.++.+|++.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 777777777777777777774 3566777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 167 VEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.+
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777777766653
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=4.3e-18 Score=129.27 Aligned_cols=200 Identities=17% Similarity=0.157 Sum_probs=119.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc----hhhHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD----VSTYKILI 87 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll 87 (217)
.+..+...|.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45555666666666666666666665542 23455666666666666666666666666655432221 11334455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
..+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...+......+++.++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 55666666666666666666543 22344555666666677777777777776665432222345666666777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
+|.+.++++.+. .|+...+..+...+.+.|++++|.++++.+.+..
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 777777766654 3555555666777777777777777776665543
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.8e-17 Score=125.87 Aligned_cols=206 Identities=13% Similarity=0.140 Sum_probs=166.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD---LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (217)
+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|..+|+++.+. .+++..+++.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 456788899999999999999999999887543222 246778889999999999999999999875 2346788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFP----SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 161 (217)
++.++.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 999999999999999999999876532221 235567778889999999999999988753 334667888889999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+.|++++|.+.++++.+.+......++..+..+|...|++++|.+.++.+.+..|
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999998765333356788899999999999999999998877654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=1.3e-15 Score=126.46 Aligned_cols=201 Identities=12% Similarity=-0.001 Sum_probs=112.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|..+...+.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44555555556666666666666666555432 2244455555555555666666666665555432 223455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 168 (217)
.+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|...|..+...+ |+..++..+..++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 5555555555555555555443 3344455555566666666666666666655542 333455555566666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 169 AANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
|.+.+..+.+.. +.+...+..+...|...|++++|.+.++.+.+..
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 666666655543 3345556666666666666666666666655443
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.75 E-value=1.9e-15 Score=125.58 Aligned_cols=195 Identities=15% Similarity=0.038 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..+..+...+.+.|++++|...|+.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+...|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334444444444555555555555444432 223444444555555555555555555554432 23445555555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
...|++++|..+|+++.+.+ +.+..+++.+...+...|+ ++|...+++..... +.+..++..+...+...|++++|.
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665543 3345555666666666666 55666666655442 223455666677777778888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 171 NYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
+.++++.+.+. .+..++..+..++.+.|++++|.++++.+.
T Consensus 858 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 858 PLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888877663 377777788888888888888888887765
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=9e-14 Score=97.94 Aligned_cols=203 Identities=17% Similarity=0.170 Sum_probs=168.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35668888999999999999999999998764 3357788889999999999999999999998764 335677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHN-PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
.+...|++++|...+++....... .....+..+...+...|++++|...+.+..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999999875322 234567778888999999999999999988763 335678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
+|.+.+++..+. .+.+...+..+...+...|+.+.|..+.+.+....
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999998876 34466677788899999999999999988776653
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.65 E-value=4e-13 Score=107.96 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=68.2
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 54 TICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE----AFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
++.+.|++++|+..+++..+.. +.+...+..+...+...|++++ |...|++..+.. +.+..++..+...+.+.|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 3333444444444444433321 1123333344444444444443 344444444332 222334444445555555
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCchHHHHHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR-CFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
++++|...++...... +.+...+..+..++.+.|++++|...++.+...+ |+.. .+..+..++...|+.++|.+.+
T Consensus 299 ~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555544431 1123344444455555555555555555544432 2221 2222344455555555555555
Q ss_pred HHHhhhc
Q 035645 209 QLEVSLR 215 (217)
Q Consensus 209 ~~~~~~~ 215 (217)
+...+.+
T Consensus 376 ~~al~~~ 382 (656)
T PRK15174 376 EHYIQAR 382 (656)
T ss_pred HHHHHhC
Confidence 5554443
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.64 E-value=7.6e-16 Score=81.54 Aligned_cols=50 Identities=38% Similarity=0.624 Sum_probs=39.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK 57 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 57 (217)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877754
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.64 E-value=6.8e-13 Score=106.64 Aligned_cols=124 Identities=13% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCCHhHHHHHHHHHhcC
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD----AFCFFSEIKIKGHPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 163 (217)
.++.+.|++++|...+++..+.+ +.+...+..+...+...|++++ |...|+...... +.+...+..+...+...
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 34444444444444444444332 2223344444444555555543 455555544431 12344555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 164 GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++.+...
T Consensus 298 g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 298 GQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55555555555555432 112334445555555555555555555555443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=8.6e-13 Score=105.86 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|++++|+..|++..+.. +.+..++..+...+
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666665542 1124455555566666666666666666655432 12345555555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
...|++++|...|++..+.+ +.+...+..+..++.+.|++++|...|+..... .+.+...++.+...+...|++++|.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHH
Confidence 66666666666666655543 223344445555555555556555555555443 1223445555555555555555555
Q ss_pred HHHHHHH
Q 035645 171 NYLMEMT 177 (217)
Q Consensus 171 ~~~~~~~ 177 (217)
+.|++..
T Consensus 488 ~~~~~Al 494 (615)
T TIGR00990 488 EKFDTAI 494 (615)
T ss_pred HHHHHHH
Confidence 5555544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=1.3e-12 Score=104.86 Aligned_cols=205 Identities=16% Similarity=0.112 Sum_probs=164.4
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH
Q 035645 7 NPP-VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85 (217)
Q Consensus 7 ~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (217)
.|+ ...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 454 5578888999999999999999999998764 3367889999999999999999999999998753 235677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH------hHHHHHHHH
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR------PVYTTLITM 159 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~ 159 (217)
+..++.+.|++++|...|++..+.. +.+...++.+...+...|++++|...|+.........+. ..++.....
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8999999999999999999998763 445678899999999999999999999998765322111 112222333
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 160 CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
+...|++++|.+++++..... +-+...+..+...+.+.|++++|.+.++...++.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 445799999999999988764 2334578899999999999999999999887653
No 17
>PF13041 PPR_2: PPR repeat family
Probab=99.61 E-value=2.6e-15 Score=79.46 Aligned_cols=49 Identities=33% Similarity=0.586 Sum_probs=28.2
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 035645 148 PNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLK 196 (217)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (217)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=2.4e-12 Score=106.59 Aligned_cols=202 Identities=12% Similarity=-0.008 Sum_probs=147.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 44333333344445788888888888887554 3444556666777788888888888888887653 22223333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
....+.|++++|...+++..+.. |+...|..+..++.+.|++++|...++...... +.+...++.+..++...|+++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 44445588999999888888764 567788888888999999999999999888763 335677888888888899999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+|.+.++...+.. +-+...+..+..++...|++++|++.++...+++|
T Consensus 661 eAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 661 QSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999998888754 23556788889999999999999999988887765
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=5.9e-13 Score=97.57 Aligned_cols=203 Identities=17% Similarity=0.232 Sum_probs=137.1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (217)
.+.+..+|.++|.++|+--..++|.+++++......+.+..+||.+|.+-.- ....++..+|....+.||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence 3456789999999999999999999999988877677788888888765432 233677778877778888888888
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH-HHHHHHHHHhc----CCCC----CHhH
Q 035645 86 LIPAVSKAGMIDE----AFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD-AFCFFSEIKIK----GHPP----NRPV 152 (217)
Q Consensus 86 ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~----~~~~----~~~~ 152 (217)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.+. .++| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888888887765 45667778888888888888888888877777644 34444443321 1221 2334
Q ss_pred HHHHHHHHhcCCCHHHHHHH------------------------------------------HHHHHHcCCCCChhhHHH
Q 035645 153 YTTLITMCGRGGRFVEAANY------------------------------------------LMEMTEMGLTPISRCFDL 190 (217)
Q Consensus 153 ~~~li~~~~~~g~~~~a~~~------------------------------------------~~~~~~~~~~~~~~~~~~ 190 (217)
|...+..|.+..+.+.|.++ ++.|.-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 44445555555555444444 333433334456666666
Q ss_pred HHHHHHhcCCchHHHHHHHHHh
Q 035645 191 VTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
++++..-.|.++-..+++..++
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSK 460 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHH
Confidence 6777777777777777666554
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=2.1e-14 Score=104.30 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC-CCcchhhHHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-SCADVSTYKILIPAVS 91 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~ 91 (217)
+..++.. ...+++++|.+++....+.. ++...+...+..+.+.++++++.++++.+.... .+.+...|..+...+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3444444 45555555555555544332 344445555555666666666666666654321 2334555556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAAN 171 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 171 (217)
+.|+.++|.+.+++..+.. +.+......++..+...|+.+++.+++....... +.|+..+..+..++...|+.++|..
T Consensus 158 ~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 6666666666666666553 2234555566666666666666666665555442 3344555666666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 172 YLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
++++..+.. +.|+.+...+.+++...|+.++|.++.+..
T Consensus 236 ~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 236 YLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred ccccccccc-cccccccccccccccccccccccccccccc
Confidence 666655533 235555556666666666666666665543
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.4e-12 Score=95.66 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=121.7
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+..++.++|.++++-...+.|.++|++......+.+..+||.+|.+-+-.. ..+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 556788888888888888888888888877667778888888887755332 2678888888888888888888888
Q ss_pred HHHhcCChHH----HHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH-HHHHHHHHH----HcCCCC----ChhhHHH
Q 035645 124 GAFRRGQFDD----AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE-AANYLMEMT----EMGLTP----ISRCFDL 190 (217)
Q Consensus 124 ~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~----~~~~~~----~~~~~~~ 190 (217)
+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +..++.++. .+.+.| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 8888887664 56677788888888888888888888888877754 444445544 223333 3345667
Q ss_pred HHHHHHhcCCchHHHHHHHHHh
Q 035645 191 VTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
-+..|.+..+.+.|.++-....
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 7777888888888888765543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.55 E-value=1.2e-11 Score=102.62 Aligned_cols=199 Identities=12% Similarity=0.009 Sum_probs=158.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|..+..++.. +++++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56677878877776 8999999988888765 356554445556667899999999999998654 455555677788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 168 (217)
++.+.|+.++|...+++..+.+ +.+...+..+.....+.|++++|...++...+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999998765 223333333344445669999999999999876 4678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 169 AANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
|...+++..... +-+...+..+..++...|++++|.+.++...++.|
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999998865 33556788888899999999999999999988765
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.55 E-value=7.4e-13 Score=101.18 Aligned_cols=189 Identities=17% Similarity=0.228 Sum_probs=100.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHhcCCHHH
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD-VSTYKILIPAVSKAGMIDE 98 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 98 (217)
|...|.++.|+..+++.++.. +--...|+.|..++...|+..+|++.|.+.... .|+ ..+.+.|..+|...|.+++
T Consensus 296 YyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchH
Confidence 333344444444444443321 112334555555555555555555555544442 222 2344555555555555555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 99 AFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
|..+|....+-. +.-...++.|...|.+.|++++|...|++... +.|+ ...|+.+...|-..|+.+.|.+.+.+.+
T Consensus 373 A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 373 ATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 555555544432 11233455566666666666666666665554 3444 3556666666666666666666666555
Q ss_pred HcCCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 178 EMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 178 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..+ |. ...++.|...|..+|++.+|.+-++....++|
T Consensus 450 ~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 450 QIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 533 33 34566777777777777777777777776665
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=1.1e-13 Score=100.52 Aligned_cols=200 Identities=16% Similarity=0.128 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..|..+...+...++++.|.+.++++...+.. +...+..++.. ...+++++|.+++....+. .++...+..++..+
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~ 120 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLY 120 (280)
T ss_dssp -----------------------------------------------------------------------------H-H
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHH
Confidence 33444555566677777777777777765433 55556666666 6777888888877766543 25666777888889
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDG-HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+.. +.|....+.++..+...|+.+++
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 121 YRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 99999999999999977542 34566778888899999999999999999998873 22577888899999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 170 ANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.++++...+.. +.|+..+..+..++...|+.++|...++......|
T Consensus 200 ~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 200 REALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99998887654 55667788999999999999999999998877654
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.54 E-value=7.4e-13 Score=101.20 Aligned_cols=203 Identities=12% Similarity=0.140 Sum_probs=141.6
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc-hhhH
Q 035645 6 FNPP-VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD-VSTY 83 (217)
Q Consensus 6 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 83 (217)
+.|+ ...|-.|...|...+.+++|...+.+..... +-....+..+...|...|.++.|++.|++..+. .|+ ...|
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 3344 3456667777777777777777777666532 124456666777777777777777777777663 344 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhc
Q 035645 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGR 162 (217)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 162 (217)
+.|..++...|++.+|.+.|++.+... +......+.|..++...|.+++|..+|....+- .|. ...++.|...|-+
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQ 400 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHh
Confidence 888888888888888888888777654 334556777778888888888888888777654 233 5677778888888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 163 GGRFVEAANYLMEMTEMGLTPIS-RCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.|++++|...+++... +.|+. ..|+.+...|...|+.+.|.+.+.++...+|
T Consensus 401 qgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred cccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 8888888888877766 34553 4677777778888888888888777776655
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.1e-12 Score=98.96 Aligned_cols=201 Identities=16% Similarity=0.090 Sum_probs=167.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
+..+|.++..+|.-+++.+.|++.|++....+ | ...+|+.+..-+....++|.|...|+....... .+-.+|.-+.
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG 496 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLG 496 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhh
Confidence 56899999999999999999999999998753 4 778888898899999999999999988866311 1234455577
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
-.|.+.++++.|.-.|++..+.+ +-+.+....+...+-+.|+.|+|++++++......+ |+..--..+..+...++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchH
Confidence 78999999999999999999876 456667777888899999999999999999876443 4445555667778899999
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 168 EAANYLMEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+|...++++++. .|+ ...|..+...|.+.|+.+.|..-|-.+.+++|
T Consensus 575 eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 575 EALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 999999999884 454 55788999999999999999999999998886
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=4.5e-11 Score=94.69 Aligned_cols=183 Identities=11% Similarity=0.006 Sum_probs=138.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 035645 24 GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLL 103 (217)
Q Consensus 24 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (217)
+++++|...+++..+.+. -+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 458999999999988753 367788888888999999999999999998864 234667888899999999999999999
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 035645 104 HNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183 (217)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 183 (217)
++..+.+. .+...+..++..+...|++++|...+.+......+-+...+..+..++...|++++|...+.++... .|
T Consensus 396 ~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 396 NECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred HHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 99988752 2233344455567778999999999999876532224556777888888999999999999887654 34
Q ss_pred Ch-hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 184 IS-RCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 184 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
+. ...+.+...|...| +.|...++.+.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 43 34455556667766 477776655443
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=5.5e-11 Score=94.18 Aligned_cols=202 Identities=12% Similarity=0.022 Sum_probs=151.1
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh---------cCchhHHHHHHHHHHhc
Q 035645 9 PVRGRDLLVQGLLN-----AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK---------SGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 9 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 74 (217)
+...|...+.+-.. .+.+++|...|++..+.... +...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44556666666422 23467899999999876322 45566666655442 34588999999999885
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
. +-+..++..+..++...|++++|...|++..+.+ +.+...+..+...+...|++++|...++...+.... +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 4 2356778888888999999999999999999876 445667888899999999999999999999886332 223334
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
.++..+...|++++|...+++..+.. .| +...+..+..++...|+.++|.+.++.+....
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 44555667899999999999987654 34 44457778888999999999999998765543
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=6.2e-11 Score=83.43 Aligned_cols=169 Identities=12% Similarity=0.041 Sum_probs=140.9
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 43 PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345678888999999999999999999997753 3356778889999999999999999999998765 34556788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCc
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGH-PPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKH 201 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (217)
..+...|++++|...+........ ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999986532 2234567778888999999999999999988754 23456788999999999999
Q ss_pred hHHHHHHHHHhhh
Q 035645 202 DLAEKIEQLEVSL 214 (217)
Q Consensus 202 ~~a~~~~~~~~~~ 214 (217)
++|.+.++...+.
T Consensus 186 ~~A~~~~~~~~~~ 198 (234)
T TIGR02521 186 KDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887765
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=5.2e-10 Score=75.90 Aligned_cols=201 Identities=18% Similarity=0.143 Sum_probs=169.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
+..-+.-.|.+.|++..|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667788999999999999999999875 3367799999999999999999999999998853 235678999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNP-FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
..|++++|...|++....-.-+ ...+|..+.-+..+.|+.+.|...|+...+.... ...+.-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988763222 3568889999999999999999999999887322 3567788889999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 171 NYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..++.....+. ++.......|+.-.+.|+-+.+.+.-..+.++-|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999887775 8888888899999999999999888766665543
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.8e-11 Score=88.37 Aligned_cols=206 Identities=12% Similarity=0.077 Sum_probs=168.5
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHH-------------------------------H
Q 035645 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSD--PDLETFN-------------------------------S 50 (217)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~-------------------------------~ 50 (217)
.|++-+...-+-...+.-...++++|+.+|+++.+...- -|..+|+ +
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCi 335 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCI 335 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceee
Confidence 355555555555556666788999999999999887311 0334443 3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 035645 51 LIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ 130 (217)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 130 (217)
+.+-|+-.++.++|+..|++..+.+. .....|+.+.+-|....+...|++-++...+-+ +-|-..|-.+-++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcc
Confidence 44456667788999999999988643 256789999999999999999999999999886 6688899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 131 FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
+.-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|......| ..+...+..|.+.|.+.++.++|-+.+++
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999988762 4478999999999999999999999999998876 34667899999999999999999999876
Q ss_pred Hhh
Q 035645 211 EVS 213 (217)
Q Consensus 211 ~~~ 213 (217)
-++
T Consensus 492 ~v~ 494 (559)
T KOG1155|consen 492 YVE 494 (559)
T ss_pred HHH
Confidence 554
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=8.9e-13 Score=103.99 Aligned_cols=198 Identities=19% Similarity=0.181 Sum_probs=140.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC------------------------CCCChhhHHHHHHHHH
Q 035645 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG------------------------SDPDLETFNSLIETIC 56 (217)
Q Consensus 1 M~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------------------------~~~~~~~~~~ll~~~~ 56 (217)
|+..|+.|+.+||.++|.-||..|+.+.|- +|.-|.-.. -.|...||..|..+|.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYR 94 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHH
Confidence 356799999999999999999999999998 776665332 2456789999999999
Q ss_pred hcCchhH---HHHHHHHHH----hcCC-----------------CcchhhHHHHHHHHHhcCCHHHHHHH----------
Q 035645 57 KSGEVEF---CVEMYYSVC----KLGS-----------------CADVSTYKILIPAVSKAGMIDEAFRL---------- 102 (217)
Q Consensus 57 ~~~~~~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~ll~~~~~~~~~~~a~~~---------- 102 (217)
..||... +.+.+..+. ..|+ -||.. ..+....-.|.++.+.++
T Consensus 95 ~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 95 IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 9998665 222121111 1121 12211 111111122222222222
Q ss_pred --------------------HHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc
Q 035645 103 --------------------LHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 103 --------------------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 162 (217)
.+......-.|++.+|..++....-.|+.+.|..++.+|++.|++.+.+-|-.|+-+
T Consensus 172 ~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g--- 248 (1088)
T KOG4318|consen 172 APFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG--- 248 (1088)
T ss_pred chHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---
Confidence 222221111488899999999999999999999999999999999999888888766
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHH
Q 035645 163 GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (217)
.++..-+..+++-|.+.|+.|+..|+.--+..+..+|....+.
T Consensus 249 ~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~ 291 (1088)
T KOG4318|consen 249 INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE 291 (1088)
T ss_pred CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc
Confidence 8888999999999999999999999997777777766544443
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.45 E-value=1.3e-10 Score=99.32 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
+..+...+...|++++|.+.+++..+... -+...+..+...|.+.|++++|+..++++.+... .+...+..+...+..
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 44456667778888888888888887532 2556677788888888888888888888765321 122222222222333
Q ss_pred cCCHHHHHHHHHHHHhC---------------------------------------CCCCCcccHHHHHHHHHhcCChHH
Q 035645 93 AGMIDEAFRLLHNLVED---------------------------------------GHNPFPSLYAPIIKGAFRRGQFDD 133 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~~~~~g~~~~ 133 (217)
.++.++|...++.+... ..+.+...+..+...+.+.|++++
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 33333333333321100 012334445556666666666666
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
|...|+...... +.+...+..+...+...|++++|.+.++...+.. +.+..+...+..++...|++++|.++++.+.+
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 666666666542 2245566666666666666666666666555432 12233445556666666666666666666554
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=2.2e-10 Score=87.30 Aligned_cols=201 Identities=12% Similarity=0.074 Sum_probs=154.0
Q ss_pred CCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC------
Q 035645 6 FNPPVRGRD--LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC------ 77 (217)
Q Consensus 6 ~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------ 77 (217)
..|+..... .....+...|+++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..
T Consensus 147 ~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 147 LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 345544333 33567888999999999999988775 336778888889999999999999888877654332
Q ss_pred -----------------------------------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 78 -----------------------------------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 78 -----------------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
.+......+...+...|+.++|.+.+++..+. .++.. -.++
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l 301 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHH
Confidence 13334455677778889999999999888774 44442 1234
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCch
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (217)
.+....++.+++.+..+...+. .+-|.....++...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 4445568899999999888766 3446677889999999999999999999999875 599999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 035645 203 LAEKIEQLEVSL 214 (217)
Q Consensus 203 ~a~~~~~~~~~~ 214 (217)
+|.++++....+
T Consensus 379 ~A~~~~~~~l~~ 390 (398)
T PRK10747 379 EAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhh
Confidence 999999877553
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.44 E-value=1.6e-10 Score=94.83 Aligned_cols=196 Identities=10% Similarity=-0.006 Sum_probs=153.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc---chhhHHHHHHHHHh
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSD-PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA---DVSTYKILIPAVSK 92 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~ 92 (217)
+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++.+
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 34556779999999999999887532 332 22235778999999999999999987643211 13456667778899
Q ss_pred cCCHHHHHHHHHHHHhCCC-----------CCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGH-----------NPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
.|++++|..+++.+.+... .|+. ..+..+...+...|++++|+++++++... .+.+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 9999999999999987531 1221 24456778899999999999999999876 3446789999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 159 MCGRGGRFVEAANYLMEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+...|++++|.+.+++..... |+ ...+......+.+.|++++|+++++.+.+..|
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999988854 54 55677788889999999999999999887765
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.9e-10 Score=81.68 Aligned_cols=204 Identities=12% Similarity=0.122 Sum_probs=141.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD---LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
..+.-+|.+.|.+.|..++|+.+.+.+.++.-.+. ......|..-|...|-+|.|.++|..+.+.+- .-......|
T Consensus 69 ~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqL 147 (389)
T COG2956 69 FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQL 147 (389)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHH
Confidence 44555677777777777777777777766421111 12334455666777777777777777765432 234566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFP----SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 162 (217)
+..|....+|++|+++-+++.+.+-.+.. .-|.-+...+....+.+.|..++.+..+.+. .++..--.+.+....
T Consensus 148 l~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~ 226 (389)
T COG2956 148 LNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELA 226 (389)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHh
Confidence 78888888888888887777765433222 2355555666666778888888887776532 234455566777888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 163 GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
.|+++.|.+.++...+.+...-+.+...|..+|...|+.++...++..+.+..
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 89999999999998888766677788899999999999999988887776543
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.43 E-value=2.3e-10 Score=97.91 Aligned_cols=202 Identities=11% Similarity=0.020 Sum_probs=150.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc--------------
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL-------------- 74 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------- 74 (217)
+...+..+...+.+.|++++|...++++.+... .+...+..+...+...++.++|+..++.+...
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 456677888899999999999999999886532 23333333333344445555555444432110
Q ss_pred -------------------------CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 75 -------------------------GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 75 -------------------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
..+.+...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 123455667788889999999999999999999875 446778999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CC---ChhhHHHHHHHHHhcCCchHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL--TP---ISRCFDLVTDGLKNCGKHDLA 204 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~~~~~~a 204 (217)
++++|.+.++...+.. +.+..+...+..++...|++++|.++++.+..... .| +...+..+...+...|+.++|
T Consensus 652 ~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 652 DLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999887652 23456677788889999999999999999886532 12 224566678889999999999
Q ss_pred HHHHHHHhh
Q 035645 205 EKIEQLEVS 213 (217)
Q Consensus 205 ~~~~~~~~~ 213 (217)
.+.++....
T Consensus 731 ~~~y~~Al~ 739 (1157)
T PRK11447 731 LETYKDAMV 739 (1157)
T ss_pred HHHHHHHHh
Confidence 999988864
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.7e-11 Score=94.05 Aligned_cols=201 Identities=9% Similarity=-0.001 Sum_probs=154.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------------------------------CCCChhhHHHHHHHHHh
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQG---------------------------------SDPDLETFNSLIETICK 57 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---------------------------------~~~~~~~~~~ll~~~~~ 57 (217)
.....+..+|...+++++|.++|+.+.... -+-.+.+|..+.++|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 445567788888999999999998887642 12246788888999999
Q ss_pred cCchhHHHHHHHHHHhcCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH
Q 035645 58 SGEVEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFC 136 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 136 (217)
+++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|+..+..+ +-+-.+|.-+-..|.+.++++.|+-
T Consensus 434 Qkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHH
Confidence 99999999999998874 45 67888889888999999999999998877543 1123355566778899999999999
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 137 FFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.|++..+-+. -+.+....+...+-+.|+.++|++++++....+. -|+..--.-+..+...++.++|.+.++.++++-|
T Consensus 511 ~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 511 HFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 9998876542 2566777777888889999999999998887653 2343444456667778999999999988877644
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=4.8e-10 Score=82.05 Aligned_cols=196 Identities=13% Similarity=0.010 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-chhhHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKILIPA 89 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~ 89 (217)
..|......+.+.|+++.|...|++..+.. +.+...|+.+...+...|++++|...|++..+. .| +..++..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 457778888999999999999999998864 336789999999999999999999999999875 34 45778888889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
+...|++++|.+.|+...+.+ |+..........+...++.++|...+...... ..|+...+ .+.. ...|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~--~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIVE--FYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHHH--HHccCCCHH
Confidence 999999999999999998764 33321222223345677899999999775543 23332222 2222 234555443
Q ss_pred HHHHHHHHH---cCC--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 170 ANYLMEMTE---MGL--TP-ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 170 ~~~~~~~~~---~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+.+..+.+ ..+ .| ...+|..+...+.+.|++++|...|+...+..|
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34444442 111 11 235799999999999999999999999887764
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=5e-10 Score=85.34 Aligned_cols=196 Identities=9% Similarity=-0.001 Sum_probs=149.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFN--SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+.. +-+......+...|
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~ 197 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 444455558999999999999999875 45544332 44678899999999999999998864 33678889999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-----------------------------------------CcccHHHHHHHHHhcC
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNP-----------------------------------------FPSLYAPIIKGAFRRG 129 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------------~~~~~~~ll~~~~~~g 129 (217)
.+.|++++|.+++..+.+.+..+ ++.....+...+...|
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99999999999998887654321 2223445566778889
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
+.++|..++.+..+. +|+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|+
T Consensus 278 ~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 278 DHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred CHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999888774 4454222 3344446689999999999888764 2345567899999999999999999999
Q ss_pred HHhhhcC
Q 035645 210 LEVSLRS 216 (217)
Q Consensus 210 ~~~~~~~ 216 (217)
...+.+|
T Consensus 353 ~al~~~P 359 (398)
T PRK10747 353 AALKQRP 359 (398)
T ss_pred HHHhcCC
Confidence 9988765
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=4.3e-10 Score=86.04 Aligned_cols=193 Identities=13% Similarity=0.120 Sum_probs=135.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC------------------
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC------------------ 77 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 77 (217)
....+...|+++.|...++.+.+.. +-+......+...+.+.|++++|.+.+..+.+.+..
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4666677788888888887777764 225566777777777777777777777666544321
Q ss_pred ------------------c-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc-HHHHHHH--HHhcCCh
Q 035645 78 ------------------A-----DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL-YAPIIKG--AFRRGQF 131 (217)
Q Consensus 78 ------------------~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~--~~~~g~~ 131 (217)
| +...+..+...+...|+.++|.+.+++..+.. |+... ...++.. ....++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 2 44556666677778888888888888888763 33321 1012222 2334677
Q ss_pred HHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 132 DDAFCFFSEIKIKGHPPNR--PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
+.+.+.++...+. .+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7787777776654 22234 56668888899999999999999965554457888888899999999999999999998
Q ss_pred HHh
Q 035645 210 LEV 212 (217)
Q Consensus 210 ~~~ 212 (217)
...
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 754
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.2e-10 Score=80.58 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=151.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch------hhHHHHHHHHHhcCCH
Q 035645 23 AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV------STYKILIPAVSKAGMI 96 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~ 96 (217)
..+.++|.+.|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++.+.+.++ ||. .....|..=|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468999999999998853 235566778999999999999999999999874 442 3445566778889999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HhHHHHHHHHHhcCCCHHHHHHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN----RPVYTTLITMCGRGGRFVEAANY 172 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~ 172 (217)
|.|+.+|..+.+.+ ..-..+...|+..|-...+|++|+++-+++.+.+-.+. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 34466788999999999999999999999988765544 24667777888888999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 173 LMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+.+..+.+. -....--.+.+.....|+++.|.+.++...+.+|
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 999887652 2334445677888999999999999999887664
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=7.4e-11 Score=84.01 Aligned_cols=197 Identities=14% Similarity=0.053 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhc
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKA 93 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (217)
+-+..+|.+.|.+.+|.+.++.-.+. .|-+.||..|-+.|.+..+++.|+.+|.+-.+. ++-|+....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34555555566666666555555543 334445555555555555555555555554442 222222223344445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH-------------
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC------------- 160 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~------------- 160 (217)
++.++|.++|+...+.. +.+......+...|.-.++++.|+..|+.+.+.|+. ++..|+.+.-+|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555554442 233333444444444455555555555555554443 344444444444
Q ss_pred ------------------------hcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 161 ------------------------GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 161 ------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
...|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++...++.|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 44455555555554444332 22344666666666678888888888877766544
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=8.7e-11 Score=83.68 Aligned_cols=169 Identities=12% Similarity=-0.020 Sum_probs=144.5
Q ss_pred CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 035645 41 SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120 (217)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (217)
...|-..-+.+.++|.+.|-+.+|...++.-.+. .|-+.||-.|-.+|.+.++++.|+.++.+-.+.- +.++....-
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g 295 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLG 295 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhh
Confidence 3334444568899999999999999999988764 5788899999999999999999999999988762 445555567
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGK 200 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (217)
+.+.+-..++.++|.++|+...+. .+.++....++...|.-.++++.|.++++++...|+ .++..|+.+.-+|...++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcc
Confidence 788899999999999999999876 355788888888999999999999999999999994 678889999999999999
Q ss_pred chHHHHHHHHHhhh
Q 035645 201 HDLAEKIEQLEVSL 214 (217)
Q Consensus 201 ~~~a~~~~~~~~~~ 214 (217)
+|.+..-|++..+.
T Consensus 374 ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 374 IDLVLPSFQRALST 387 (478)
T ss_pred hhhhHHHHHHHHhh
Confidence 99999998887654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.9e-10 Score=82.10 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=164.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
.|...+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|++-|++..+.. +.|-..|-.|..+|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 45566777788889999999999999986533 66789999999999999999999999999864 34889999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
.-.+...-|+-.|++..... +.|...|.+|-.+|.+.++.++|+..|+.....|-. +...+..|.+.+-+.++..+|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999998875 668899999999999999999999999999887633 6688999999999999999999
Q ss_pred HHHHHHHH----cCC-CC-ChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 171 NYLMEMTE----MGL-TP-ISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 171 ~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
..|.+.++ .|. .| .......|..-+.+.+++++|......
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99988774 232 23 233444577788899999998876543
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.30 E-value=4.4e-09 Score=86.04 Aligned_cols=200 Identities=11% Similarity=0.008 Sum_probs=162.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC-----CCcchhhHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-----SCADVSTYKILIPA 89 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~ 89 (217)
--+-++...|+..++++.++.+...|.+....+-..+.++|...+++++|..+|+.+.... ..++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 4566788899999999999999988866566688899999999999999999999996542 12344446789999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-----------CCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGH-----------NPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTT 155 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (217)
+...+++++|..+++.+.+... .|+. ..+..++..+...|++.+|++.++++.... +-|......
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 9999999999999999987321 1221 234556788899999999999999998763 458899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 156 LITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 156 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+...+...|.+.+|.+.++...... +-+..+......++...+++++|.++.+...+..|
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999999999999999997766542 23456777889999999999999999877766544
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.30 E-value=6.1e-09 Score=85.74 Aligned_cols=119 Identities=10% Similarity=0.048 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...+..+...+.+.|++++|..+|++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+.. +..+..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~ 125 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHH
Confidence 3346666666677777777777777666542 2244555566666666777777777776665542 22334 5566666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 132 (217)
+...|+.++|...+++..+.. +.+...+..+..++...|..+
T Consensus 126 l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 666677777766666666553 222333333444444444433
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=1.5e-09 Score=83.59 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=105.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhc-----CC-Ccch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC--
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKL-----GS-CADV-STYKILIPAVSKAGMIDEAFRLLHNLVED---GHNPF-- 114 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-- 114 (217)
+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...+...+++++|..+++...+. -..++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 3444444555555555555554444211 11 1111 22344455555555566655555544321 11111
Q ss_pred --cccHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCC
Q 035645 115 --PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-----G--HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE----MGL 181 (217)
Q Consensus 115 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~ 181 (217)
..+++.+...|...|++++|.+++++.... | ..-....++.+...|.+.+++.+|.++|.+... .|.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 356888899999999999999999987643 1 112246778888899999999999998887653 232
Q ss_pred -CCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 182 -TPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 182 -~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.|+ ..+|..|...|.+.|+++.|.++.+....
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 122 35889999999999999999999887664
No 49
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.27 E-value=9.9e-09 Score=84.07 Aligned_cols=186 Identities=13% Similarity=0.073 Sum_probs=144.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcC
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDL--ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (217)
+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... .+.+......+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 334568999999999999998864 443 234 8888888999999999999999721 1222333334466888889
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLM 174 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 174 (217)
++++|+++|+++.+.. +-+...+..++..+...++.++|++.+..+... .|+...+..++..+...++..+|.+.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999885 445677778889999999999999999999876 4565566555555555677767999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 175 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
++.+.. +-+...+..+..++.+.|-...|.++.+.
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 999875 34567788999999999999999888754
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1.8e-08 Score=73.63 Aligned_cols=195 Identities=15% Similarity=0.169 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-----------
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA----------- 78 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 78 (217)
...+-+........|+.+.|..-+.++.+.+.. +.........+|.+.|++.....+...+.+.|.-.
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 333444555555666666666666666555322 45555566666666666666666666665554422
Q ss_pred ------------------------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 79 ------------------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 79 ------------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
++..-.+++.-+.+.|+.++|.++..+..+.+..|. -...-.+.+-
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~ 307 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRP 307 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCC
Confidence 233334444445555555555555555555443333 1111223333
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 129 GQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 129 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
++.+.-.+..+.-.+. ++.++..+.+|...|.+.+.|.+|.+.|+...+. .|+..+|..+.++|.+.|+..+|.++.
T Consensus 308 ~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHH
Confidence 4444444433333222 2335678899999999999999999999966664 699999999999999999999999998
Q ss_pred HHHh
Q 035645 209 QLEV 212 (217)
Q Consensus 209 ~~~~ 212 (217)
+...
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 7654
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.25 E-value=5.9e-09 Score=79.87 Aligned_cols=118 Identities=10% Similarity=0.073 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch--hhHHHHHHHHHhcCCHHHH
Q 035645 23 AGYLESAKQMVNKMIKQGSDPDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV--STYKILIPAVSKAGMIDEA 99 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a 99 (217)
.|+++.|.+.+.+..+. .|+.. .+-....+..+.|+++.|.+.+.+..+.. |+. ...-.....+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 35555555555444332 12221 22233344444455555555555543321 222 1222234444445555555
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 100 FRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
...++.+.+.+ +-+..++..+...+...|++++|.+.+..+.+.+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 55555555443 2233344445555555555555555555554443
No 52
>PF12854 PPR_1: PPR repeat
Probab=99.23 E-value=1.6e-11 Score=58.77 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=27.4
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035645 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
+|++||..|||++|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4778888888888888888888888888888773
No 53
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=1.8e-09 Score=78.35 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=134.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH-HHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETF-NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (217)
+|.......+...+...++-+.+..-+++....+..++..++ ......+...|++++|++++..- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 555555555555554445555666555555444333223233 33445667789999998887542 35667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 161 (217)
.+.+|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 8899999999999999999998764 33445555555443 34689999999998765 5678899999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCc-hHHHHHHHHHhhhcC
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKH-DLAEKIEQLEVSLRS 216 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~ 216 (217)
..|++++|.+++.+..+.+ +-+..+...++-+....|+. +.+.+++..+.+..|
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999999999877654 33556777777777778877 667788877765543
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=6.7e-08 Score=70.70 Aligned_cols=200 Identities=11% Similarity=0.042 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..|..-..+.-+.|+.+.+-.++.+..+.-..++....-.........|+++.|..-.+++.+.+. .+.........+|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHH
Confidence 345556666777788888888888777653345566666677777778888888888887776543 3567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCc-------ccHHHHHHH----------------------------------HHhcC
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFP-------SLYAPIIKG----------------------------------AFRRG 129 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~----------------------------------~~~~g 129 (217)
.+.|++.....+...+.+.+.-.++ .+|..+++- +.++|
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG 277 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC
Confidence 8888888888888888777654333 233333333 34444
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
+.++|.++..+..+++..|+ -...-.+.+.++.+.-.+..++-.+.. +-++..+.+|...|.+.+.|.+|.+.|+
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred ChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555544444444433322 111112233444444443333333221 2244678899999999999999999999
Q ss_pred HHhhhcC
Q 035645 210 LEVSLRS 216 (217)
Q Consensus 210 ~~~~~~~ 216 (217)
...+.++
T Consensus 353 aAl~~~~ 359 (400)
T COG3071 353 AALKLRP 359 (400)
T ss_pred HHHhcCC
Confidence 8877654
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=7.8e-08 Score=65.56 Aligned_cols=164 Identities=11% Similarity=-0.037 Sum_probs=137.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
+..-|.-.|.+.|+...|..-+++..+.. +.+..++..+...|.+.|+.+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34567778999999999999999998853 2356789999999999999999999999999875 456778999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHH
Q 035645 127 RRGQFDDAFCFFSEIKIKGHP-PNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (217)
..|.+++|...|+.......- -...+|..+.-+..+.|+++.|...|++-.+.. +-...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998875222 235788899888899999999999999988765 234456778889999999999999
Q ss_pred HHHHHHhh
Q 035645 206 KIEQLEVS 213 (217)
Q Consensus 206 ~~~~~~~~ 213 (217)
.++++...
T Consensus 194 ~~~~~~~~ 201 (250)
T COG3063 194 LYLERYQQ 201 (250)
T ss_pred HHHHHHHh
Confidence 99877654
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.7e-08 Score=73.99 Aligned_cols=197 Identities=14% Similarity=0.093 Sum_probs=145.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
|--+...|....+.++.+..|+.....+.. ++.+|..-...+.-.+++++|..=|++.++... -+...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHH
Confidence 667777888888888888899888776533 666777767777777888999999988877432 245667777777788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CCH--hHHHHHHHHHhcCCC
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHP-----PNR--PVYTTLITMCGRGGR 165 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~--~~~~~li~~~~~~g~ 165 (217)
.+++++++..|++.++. ++..+.+|+....++...++++.|.+.|+........ .+. .+--.++. +--.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhh
Confidence 88999999999998876 3556788999999999999999999999887654111 111 11112222 224488
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 166 FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
+..|..++++..+.+.+ ....|..|...-.+.|+.++|.++|+....+
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899988888876532 3446888999999999999999999876543
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=2.2e-08 Score=75.11 Aligned_cols=195 Identities=13% Similarity=0.055 Sum_probs=153.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
..+.-.|+...|..-|+..++....++ ..|--+..+|...++.++.+..|+...+.+.. +..+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 344557899999999999988654433 33777888899999999999999999876433 6777888888888889999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
+|..=|++..+.+ +-+...|..+.-+..+.+.+++++..|++.++. ++..+..|+.....+...++++.|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999998775 345667778888888999999999999999887 66678999999999999999999999999987
Q ss_pred HcCCC-----CChh-hHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 178 EMGLT-----PISR-CFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 178 ~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+.... .+.. ..+.-+-.+...+++..|.+++.++.+++|
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc
Confidence 53211 1111 112222233356999999999999999886
No 58
>PF12854 PPR_1: PPR repeat
Probab=99.11 E-value=1.2e-10 Score=55.80 Aligned_cols=32 Identities=38% Similarity=0.488 Sum_probs=16.0
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 145 GHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 145 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.2e-08 Score=74.76 Aligned_cols=206 Identities=11% Similarity=0.050 Sum_probs=157.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
|....+|-++...|...|+..+|.+.|-+....+.. =...|-.....|+-.+..|+|+..|...-+. ++-...-+--+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHH
Confidence 445677888888888889999999998887654211 3456788888888888899998888877553 22222223334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc--CCC----CCHhHHHHHHHHH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--GHP----PNRPVYTTLITMC 160 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~ 160 (217)
.--|.+.+..+.|.++|.+..... +.|+.+++-+--.....+.+.+|...|...... ... .-..+++.|..++
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 445788899999999999888764 557778888877778888999999999887632 111 1245688889999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 161 GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+.+.+++|+..++...... +-+..++.++.-.|...|+++.|.+.|.+..-++|
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999999888754 56788999999999999999999999998887776
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=1.3e-07 Score=67.14 Aligned_cols=185 Identities=13% Similarity=0.073 Sum_probs=102.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch--hhHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSD-P-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV--STYKI 85 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 85 (217)
...+-.+...+.+.|+++.|...|+++...... | ...++..+..++.+.|++++|+..++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 445556666666777777777777766553211 1 1134555666666777777777777776653211111 13334
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHH
Q 035645 86 LIPAVSKA--------GMIDEAFRLLHNLVEDGHNPFP-SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTL 156 (217)
Q Consensus 86 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (217)
+..++... |+.++|.+.|+.+.+.. |+. ..+..+..... ... .. ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence 44444433 55666666666666542 222 12111111000 000 00 0011244
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 157 ITMCGRGGRFVEAANYLMEMTEMGL--TPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 157 i~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
...+.+.|++++|...+....+... +.....+..+..++...|++++|.++++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667788888888888888876431 123467788888888888888888888776543
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.08 E-value=8.7e-08 Score=67.97 Aligned_cols=150 Identities=15% Similarity=0.025 Sum_probs=96.2
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc---cH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC-A-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS---LY 118 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 118 (217)
....+-.+...+.+.|++++|...|+++...... | ...++..+..++.+.|++++|...++++.+.... +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 5566777888888999999999999998764321 1 1246677888899999999999999999876421 222 34
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 035645 119 APIIKGAFRR--------GQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD 189 (217)
Q Consensus 119 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (217)
..+..++.+. |++++|.+.+..+... .|+ ...+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444555443 6788888888888765 233 222222211100 000 000 0112
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 190 LVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.+...+.+.|++++|...++...+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5667788889999999988887654
No 62
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=4e-08 Score=73.43 Aligned_cols=172 Identities=13% Similarity=0.208 Sum_probs=92.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (217)
.+|++++|.+.+++.+.....-....||+=+ .+-..|++++|++.|-++... ..-+..+.-.+.+.|-...+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3577777877777776654332333333322 345567777777777665432 22344555556666666666666666
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChH----------------------------------HHHHHHHHHHhcCCC
Q 035645 102 LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD----------------------------------DAFCFFSEIKIKGHP 147 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~----------------------------------~a~~~~~~~~~~~~~ 147 (217)
++-+.... ++.|+.....|...|-+.|+-. +++..|++..- +.
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 66554432 2334555555555555555544 44444443321 35
Q ss_pred CCHhHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 035645 148 PNRPVYTTLITMCG-RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG 199 (217)
Q Consensus 148 ~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (217)
|+..-|-.++..|. +.|++++|+++++..... ++-|.....-|+..+...|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 56666665554443 456666666666554432 3445555555555555544
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.05 E-value=4.5e-09 Score=83.74 Aligned_cols=175 Identities=18% Similarity=0.186 Sum_probs=117.1
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC------------------------CcchhhHHHH
Q 035645 31 QMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS------------------------CADVSTYKIL 86 (217)
Q Consensus 31 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------~~~~~~~~~l 86 (217)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-... .|...||..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 45677888999999999999999999999999988 7776643211 3567899999
Q ss_pred HHHHHhcCCHHHHHHHHHH-HH-------hCCC-----------------CCCcccHHHHHHHHHhcCChHHHHHHHH--
Q 035645 87 IPAVSKAGMIDEAFRLLHN-LV-------EDGH-----------------NPFPSLYAPIIKGAFRRGQFDDAFCFFS-- 139 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~-~~-------~~~~-----------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~-- 139 (217)
..+|...|++.. ++..++ |. ..|. .||.. ..+.-....|.|+.+..++.
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 999999998754 222222 21 1111 11111 11111222222222222221
Q ss_pred --------------H-------------HHhcCC-CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 035645 140 --------------E-------------IKIKGH-PPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLV 191 (217)
Q Consensus 140 --------------~-------------~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (217)
. |.+.+. .|++.+|..++..-..+|+.+.|..++.+|.+.|++.+..-|..|
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1 111112 488899999999999999999999999999999998888877777
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 035645 192 TDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
+-+ .++...++.++..|..
T Consensus 246 l~g---~~~~q~~e~vlrgmqe 264 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQE 264 (1088)
T ss_pred hhc---CccchHHHHHHHHHHH
Confidence 766 6777777777765544
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=2.5e-07 Score=67.89 Aligned_cols=172 Identities=11% Similarity=-0.011 Sum_probs=120.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|+.+...+...|+++.|...|++..+... -+..+|..+..++...|++++|++.|++..+. .|+.........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~ 173 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLY 173 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 467899999999999999999999999987542 25678888999999999999999999999875 344432223333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc---CC--CC-CHhHHHHHHHHHhc
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK---GH--PP-NRPVYTTLITMCGR 162 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~--~~-~~~~~~~li~~~~~ 162 (217)
.+...++.++|...|.+..... .++...+ . ......|+.+.+ ..+..+.+. .. .| ....|..+...+..
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~ 248 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLS 248 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999997765432 3332222 2 233345665544 344444321 11 11 24688999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHH
Q 035645 163 GGRFVEAANYLMEMTEMGLTPISRCFD 189 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (217)
.|++++|...|++..+.+ +||..-+.
T Consensus 249 ~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 249 LGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 999999999999999866 34544444
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=3.6e-07 Score=62.87 Aligned_cols=162 Identities=9% Similarity=0.056 Sum_probs=122.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM 95 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (217)
-+..|...|+++.+....+.+... . ..+...++.++++..++...+.. +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 345688899999876555433221 1 01223567788888888887653 4578889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 035645 96 IDEAFRLLHNLVEDGHNPFPSLYAPIIKGA-FRRGQ--FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANY 172 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 172 (217)
+++|...|++..+.+ +.+...+..+..++ ...|+ .++|.+++++..+.+. -+..++..+...+.+.|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999875 44667777777764 67777 5999999999998743 3678899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHH
Q 035645 173 LMEMTEMGLTPISRCFDLVTDG 194 (217)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~ 194 (217)
|+++.+.. +|+..-+. +|.+
T Consensus 167 ~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 167 WQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHhhC-CCCccHHH-HHHH
Confidence 99998865 45554443 3344
No 66
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.01 E-value=2.3e-07 Score=77.62 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=155.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDP-----DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTY 83 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (217)
+...|-..|....+.++.++|+++.++.+.. +.+ -...|.++++.-...|.-+...++|+++.+. .-....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3456888999999999999999999998764 222 2346777777777778888899999999774 3345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhc
Q 035645 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHP-PNRPVYTTLITMCGR 162 (217)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 162 (217)
..|...|.+.+..++|-++++.|.+.- .-....|...+..+.++++-++|..++.+..+.-.+ -........++.-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999998762 245678999999999999999999999887765111 124455566666678
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 163 GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
.|+.+.+..+|+...... +--...|+..++.=.++|+.+.++++|++...+.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 888888888888877643 2344578888888888888888888888877653
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.98 E-value=1.7e-07 Score=72.51 Aligned_cols=171 Identities=17% Similarity=0.216 Sum_probs=124.8
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-----C-CCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKL-----G-SCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVED-----GH 111 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~ 111 (217)
-..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677889999999999999999887653 2 123333 3445777888999999999999988743 21
Q ss_pred --CCCcccHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCC-CC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH---c
Q 035645 112 --NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI-----KGHP-PN-RPVYTTLITMCGRGGRFVEAANYLMEMTE---M 179 (217)
Q Consensus 112 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~ 179 (217)
+--..+++.|..+|.+.|++++|...++...+ .|.. |. ...++.+...+...+++++|..++.+..+ .
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 11234677888889999999998888877543 1222 22 24566777888899999999999987763 1
Q ss_pred CCCCCh----hhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 180 GLTPIS----RCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 180 ~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
-+.++. .+++.|...|...|++++|+++++.+.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 122333 58999999999999999999999888754
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=8.7e-07 Score=66.80 Aligned_cols=197 Identities=15% Similarity=0.055 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChh-hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGS-DPDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
.|..+...+...|+.+.+...+....+... .++.. ........+...|++++|.+.+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344555555555666665555554433211 11211 11222334455666666666666665532 122223321 111
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCC
Q 035645 90 VSK----AGMIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 90 ~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 164 (217)
+.. .+..+.+.+.+... ....|+ ......+...+...|++++|...++...+.. +.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 212 23333333333321 111121 1222334445566666666666666666542 223455556666666666
Q ss_pred CHHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 165 RFVEAANYLMEMTEMGL-TPIS--RCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 165 ~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
++++|...+++...... .|+. ..|..+...+...|++++|.++++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666666666554321 1121 2344556666666666666666666543
No 69
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.96 E-value=6.5e-08 Score=77.95 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC-CCcchhhHHHHHHHHHhc---------
Q 035645 24 GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-SCADVSTYKILIPAVSKA--------- 93 (217)
Q Consensus 24 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~--------- 93 (217)
++..+|...+++..... ..++..++.+...+.....+..|.+-|....+.- ..+|..+.-.|.+.|.+.
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 45555666666555432 2345555555666666666666666665554321 124556555666655432
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 94 ---GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 94 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
+..++|+.+|.+.++.. +.+..+-|-+--.++..|++.+|..+|..+.+... .+..+|-.+..+|...|++..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 34678888888888775 55677778888888999999999999999988743 35568889999999999999999
Q ss_pred HHHHHHHH-cCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 171 NYLMEMTE-MGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++|+...+ ..-.-+..+...|..++.+.|.+.+|.+.+.....+.|
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 99988774 44445677888999999999999999998877766543
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=5.3e-07 Score=62.06 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=118.2
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 035645 51 LIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ 130 (217)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 130 (217)
.+-.|...|+++.+....+.+.. |. . .+...++.+++...++...+.+ +.+...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34568889998887555433322 11 0 1223677788888888888775 6678899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHhHHHHHHHHH-hcCCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHH
Q 035645 131 FDDAFCFFSEIKIKGHPPNRPVYTTLITMC-GRGGR--FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (217)
+++|...|+...... +.+...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+...+.+.|++++|.+.
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998874 33678888888764 67777 599999999999876 33667889999999999999999999
Q ss_pred HHHHhhhcC
Q 035645 208 EQLEVSLRS 216 (217)
Q Consensus 208 ~~~~~~~~~ 216 (217)
++.+.++.|
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 999988765
No 71
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.95 E-value=1.2e-06 Score=70.39 Aligned_cols=204 Identities=15% Similarity=0.094 Sum_probs=157.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
.|.+...-.......-.|++++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-..-..+ +-|...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3334444444555555699999999999999875 4488899999999999999999999886665442 3467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----hHHHHHHHHHhc
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR----PVYTTLITMCGR 162 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~ 162 (217)
.....+.|.++.|.-+|.+..+.+ +++...+-.-...|-+.|+...|.+.|.++.....+.|. ...-.+++.+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 555556666778899999999999999999887332222 233345667777
Q ss_pred CCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 163 GGRFVEAANYLMEMTE-MGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.++-+.|.+.+..... .+-..+...++.++..|.+..+++.|.........
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 7877999998887765 23355667788899999999999998887655543
No 72
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.5e-06 Score=60.53 Aligned_cols=158 Identities=14% Similarity=0.042 Sum_probs=111.0
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 49 NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
..+-..+...|+-+....+....... .+.|....+..+....+.|++.+|...+++..... ++|..+|+.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55566666677777766666654332 23355566667777788888888888888877665 66777888888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 129 GQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 129 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
|+.+.|..-|.+..+.- .-+....|.+.-.+.-.|+++.|..++......+ .-|..+-..+..+....|++++|+++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888777652 2245667777777777888888888887766544 235556667777777888888887775
Q ss_pred HH
Q 035645 209 QL 210 (217)
Q Consensus 209 ~~ 210 (217)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 73
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=6.8e-08 Score=75.71 Aligned_cols=193 Identities=16% Similarity=0.058 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..|.-++.+|...|+-.+|..+..+..++ +||+..|..+.+......-+++|+++.+..... +-..+....
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~ 495 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccc
Confidence 34556666677777777776666666552 566666766666666666666666666544221 011111112
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
.+.++++++.+.|+.-.+.+ +....+|-.+-.+..+.++++.|...|....... +.+...||.+-.+|.+.++-.+|.
T Consensus 496 ~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred ccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHH
Confidence 23455666666666555443 3344566666666667777777777777766541 224677888888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 171 NYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
..+.+..+.+ .-+...|..-+....+-|.+++|.+.++.+.+.+
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8887777766 4444455556666667788888887777776543
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=2.9e-06 Score=66.41 Aligned_cols=198 Identities=19% Similarity=0.188 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhc-----CchhHHHHHHHHHHhcCCC---c---
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLE-TFNSLIETICKS-----GEVEFCVEMYYSVCKLGSC---A--- 78 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~---~--- 78 (217)
.........+.+.|+.++|..+|..+++++ |+.. -|..+..+..-. .+.+...++|+++...-.. |
T Consensus 39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl 116 (517)
T PF12569_consen 39 AVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence 335566677788888888888888888774 4444 444444444222 2455566666665432110 0
Q ss_pred -------------------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCcc--c
Q 035645 79 -------------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVED----G----------HNPFPS--L 117 (217)
Q Consensus 79 -------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~ 117 (217)
-+.+|+.+-..|......+-..+++...... + -+|+.. +
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~ 196 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWT 196 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHH
Confidence 0123444444444333333344444444321 1 123332 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 035645 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLK 196 (217)
Q Consensus 118 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (217)
+.-+...|-..|++++|++.+++.+++ .|+ +..|..-...+-+.|++++|.+.++..+..+ .-|...-+..+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 455667788899999999999988876 455 6778888888899999999999999888766 467777888888889
Q ss_pred hcCCchHHHHHHHHHhh
Q 035645 197 NCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 197 ~~~~~~~a~~~~~~~~~ 213 (217)
++|++++|++++....+
T Consensus 274 Ra~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTR 290 (517)
T ss_pred HCCCHHHHHHHHHhhcC
Confidence 99999999998877654
No 75
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.8e-06 Score=59.00 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=133.3
Q ss_pred cCCHHHHHHHHHHHhh---CC-CCCChhh-HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 23 AGYLESAKQMVNKMIK---QG-SDPDLET-FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~---~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
..+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4568888888888764 34 4555543 446666777888899999999888765 3334444333344456678899
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
+|.++++.+.+.+ +.|..++--=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999988876 556667766666777778777888887777766 56688999999999999999999999998888
Q ss_pred HcCCCCChhhHHHHHHHHHhcC---CchHHHHHHHHHhhhcC
Q 035645 178 EMGLTPISRCFDLVTDGLKNCG---KHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~ 216 (217)
-.. +.++..+..+.+.+...| +.+.|.+.+....++.|
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 643 234444555655554444 45566777776665543
No 76
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=6.8e-07 Score=62.16 Aligned_cols=160 Identities=20% Similarity=0.221 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhc
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKA 93 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (217)
..+-..+...|+-+....+....... .+.|....+.......+.|++.+|+..+.+.... -++|..+|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 33444555566666666666554332 2335566677889999999999999999999765 467899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYL 173 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 173 (217)
|+.++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+. -|..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999998874 34567889999999999999999999999887743 36777888888889999999999887
Q ss_pred HHHH
Q 035645 174 MEMT 177 (217)
Q Consensus 174 ~~~~ 177 (217)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
No 77
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.2e-06 Score=65.74 Aligned_cols=161 Identities=15% Similarity=0.192 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
.....+...|-...+...|++++-+..+. ++.|+...+-|...|-+.|+-.+|.+.+-.--+. ++-+..+..=|...|
T Consensus 559 evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayy 636 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYY 636 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHH
Confidence 33444455555556666666666554432 4446667777777777777777777765444332 445667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF-RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
....-+++++..|++..- +.|+..-|..++..|. +.|++++|.++|+..... ++.|.....-|+..+...|- .++
T Consensus 637 idtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~ 712 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDA 712 (840)
T ss_pred HhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhH
Confidence 777778888888887654 4789999998886654 689999999999999876 67788888888888877774 445
Q ss_pred HHHHHHHH
Q 035645 170 ANYLMEMT 177 (217)
Q Consensus 170 ~~~~~~~~ 177 (217)
.++-+++.
T Consensus 713 key~~kle 720 (840)
T KOG2003|consen 713 KEYADKLE 720 (840)
T ss_pred HHHHHHHH
Confidence 55555444
No 78
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=8.5e-07 Score=57.86 Aligned_cols=95 Identities=8% Similarity=-0.171 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (217)
+..+...+.+.|++++|...|+...... +.+..++..+..++.+.|++++|...|++....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666665532 2245556666666666666666666666666543 3345555666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 035645 128 RGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~ 144 (217)
.|++++|...|......
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=1.1e-06 Score=71.20 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=88.5
Q ss_pred CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 035645 42 DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD-VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120 (217)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (217)
..+...+-.|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|....++..... +-+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 335666666777777777777777777777663 343 4556666777777777777777777777654 233445566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
+..++.+.|++++|.++|+++... .+-+..++..+..++-..|+.++|...|+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777777777777777777663 223466677777777777777777777777664
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=8.1e-07 Score=71.85 Aligned_cols=138 Identities=9% Similarity=0.001 Sum_probs=118.5
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 035645 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTT 155 (217)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (217)
...+...+..|..+..+.|+.++|..+++...+.. +-+......+..++.+.+++++|...++...... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45578899999999999999999999999999874 3345678889999999999999999999998873 235677788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 156 LITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 156 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 8889999999999999999999843 23477899999999999999999999998877653
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=2.5e-06 Score=64.36 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=110.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCcc-hhhHHHHHHHHH
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGSCAD-VSTYKILIPAVS 91 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 91 (217)
...+...|++++|.+.+++..+.. +.+...+.. ...+.. .+..+.+.+.++.. ....|+ ......+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 345667899999999999988763 234444442 222222 34455555555441 112233 344556667888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCH--hHHHHHHHHHhcCCCHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH-PPNR--PVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~ 168 (217)
..|++++|...+++..+.. +.+...+..+..++...|++++|...+.+...... .|+. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999875 44566788888999999999999999998876532 2232 345578888999999999
Q ss_pred HHHHHHHHHH
Q 035645 169 AANYLMEMTE 178 (217)
Q Consensus 169 a~~~~~~~~~ 178 (217)
|.+++++...
T Consensus 205 A~~~~~~~~~ 214 (355)
T cd05804 205 ALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=6.6e-07 Score=58.38 Aligned_cols=114 Identities=9% Similarity=-0.097 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
..++++..+. .|+. +..+...+...|++++|...|+.....+ +.+..+|..+..++.+.|++++|...|......
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4556666653 3443 5567788899999999999999998875 557788999999999999999999999999976
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 145 GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 145 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
. +.+...+..+..++...|++++|...|+...+.. |+..
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~ 126 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADA 126 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh
Confidence 3 3478899999999999999999999999988754 5443
No 83
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.84 E-value=2.1e-07 Score=70.46 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=102.7
Q ss_pred cCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 035645 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED--GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151 (217)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 151 (217)
.+.+.+......+++.+....+++++..++.+++.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344556777888888888888899999998888865 222334566789999999999999999999888899999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNC 198 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (217)
++|.|++.+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988877777778887777777665
No 84
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=8.8e-06 Score=60.13 Aligned_cols=200 Identities=12% Similarity=0.060 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCch--hHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 13 RDLLVQGLLNAG-YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV--EFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 13 ~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
|+.--.++...| ++++++..++++.+...+ +..+|+..-..+.+.|+. ++++.+++++.+... -+..+|+...-+
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~ 151 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 444444444444 456666666666654322 444555444344444432 455666666655432 255666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CCh----HHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR---GQF----DDAFCFFSEIKIKGHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 162 (217)
+...|+++++++.++++.+.+ +-+..+|+.....+.+. |.. ++......+..... +-|...|+-+...+..
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 677777777777777777765 33455566555544443 222 34555555555442 2356677777666665
Q ss_pred C----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC------------------CchHHHHHHHHHhhhcCC
Q 035645 163 G----GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG------------------KHDLAEKIEQLEVSLRSV 217 (217)
Q Consensus 163 ~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~a~~~~~~~~~~~~v 217 (217)
. ++..+|.+.+.+..+.+ ..+......|++.|+... ..++|.++++.+.+.+||
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 230 DKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred CCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 2 33455777776665543 335566777888887532 236677777777666654
No 85
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.83 E-value=9e-08 Score=72.36 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=104.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh
Q 035645 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ--GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST 82 (217)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (217)
+.+.+......+++.+....+++.+..++.+.+.. ....-..|..++++.|.+.|..++++.++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556777888888888888999999999988865 3333455667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
+|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777778877777777665
No 86
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.82 E-value=4.1e-06 Score=68.05 Aligned_cols=201 Identities=12% Similarity=0.013 Sum_probs=149.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch--hhHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSD--PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV--STYK 84 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 84 (217)
+++..+.|...|.-.|++..++.+...+...... .-...|-.+.++|...|++++|...|....+. .++. ..+-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~ 346 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLV 346 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccccc
Confidence 5667888888899999999999999988765321 12445778899999999999999999777654 3443 3445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG----QFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
-+...+.+.|+++.+...|+...+.. +.+..+...+-..|...+ ..+.|..++.+....- +.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 68888999999999999999998874 334556666666666654 5677888888777653 44677887777766
Q ss_pred hcCCCHHHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 161 GRGGRFVEAANYLMEMT----EMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 161 ~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
-. ++...+..++.... ..+-.+.+...+.+.......|+++.|...|+...+.
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 54 44444477776554 4555577788899999999999999999999887654
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=2.5e-07 Score=67.34 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=114.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH----HH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA----VS 91 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~ 91 (217)
....+...|+++.|+++++.- .+.......+.+|.+.++++.|.+.++.|.+. ..| .+...+..+ +.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHh
Confidence 334566789999999987542 36777788899999999999999999999874 333 333334443 33
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH-HHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF-VEAA 170 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~ 170 (217)
-.+.+++|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+ +-++.+...++.+....|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHH
Confidence 345799999999998765 46788889999999999999999999999987654 33577888888888888888 6688
Q ss_pred HHHHHHHHc
Q 035645 171 NYLMEMTEM 179 (217)
Q Consensus 171 ~~~~~~~~~ 179 (217)
+.+.++...
T Consensus 257 ~~l~qL~~~ 265 (290)
T PF04733_consen 257 RYLSQLKQS 265 (290)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHHHh
Confidence 888888764
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.81 E-value=3.9e-06 Score=70.63 Aligned_cols=199 Identities=13% Similarity=0.067 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
-.|.++++.-...|.-+...++|+++.+.- -....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHH
Confidence 357777777777788899999999998752 23456789999999999999999999999876 345778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHN-PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
.+.++-+.|..++++.++.-.+ -........+..-.+.|+.+.+..+|+...... +--...|+.+|++-.++|+.+.+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHH
Confidence 9999999999999998876211 123345555666678999999999999998763 33578999999999999999999
Q ss_pred HHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 170 ANYLMEMTEMGLTPIS--RCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 170 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
..+|++....++.|-. ..|..-++.=...|+-+.++.+-.++.+
T Consensus 1654 R~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999999998887754 4677777777778888888777655543
No 89
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.81 E-value=1.2e-08 Score=49.37 Aligned_cols=33 Identities=33% Similarity=0.659 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD 44 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 44 (217)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677778888888888888888888777777776
No 90
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.81 E-value=5.5e-06 Score=66.75 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=45.3
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 150 RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
...|.-+..++...|++.+|..+|..+......-+...|-.+..+|...|..++|.+.+++...+.|
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4455556667777777777777777776654444555677777777777777777777777666554
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=2.2e-06 Score=70.52 Aligned_cols=204 Identities=9% Similarity=0.025 Sum_probs=131.6
Q ss_pred CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCchhHHHHHHHHHHhcC-------
Q 035645 5 GFNP-PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDL-ETFNSLIETICKSGEVEFCVEMYYSVCKLG------- 75 (217)
Q Consensus 5 g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 75 (217)
++.| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++...+..+ .+...-
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 3444 4577999999999999999999999977765 3443 3344444466666666655554 332210
Q ss_pred -----------CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 76 -----------SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 76 -----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
..-+..++..+..+|-+.|+.++|..+|+++.+.+ +-+..+.|.+...|+.. ++++|.+++.+....
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11233577788888889999999999999999987 66788999999999999 999999999887654
Q ss_pred CC---CCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 145 GH---PPN--RPVYTTLITMCGRGGRFVEAANYLMEMTEM-GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 145 ~~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
-+ .++ ...|.-++. ....+.+.-.++.+.+... |..--..++--+-..|....+|+++.++++.+.+.++
T Consensus 179 ~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 11 000 111222211 1223333334444444322 3333344555566677777777777777777776553
No 92
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=1.2e-05 Score=59.36 Aligned_cols=197 Identities=8% Similarity=0.019 Sum_probs=141.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-chhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG-EVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
++..+-..+...++.++|+.+..++++... -+..+|+..-.++...| ++++++..++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 455566667778899999999999987632 25567776666666777 679999999999876433 556677665556
Q ss_pred HhcCCH--HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC---CC
Q 035645 91 SKAGMI--DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG---GR 165 (217)
Q Consensus 91 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~ 165 (217)
.+.++. +++..+++++.+.+ +-+..+|+....++.+.|+++++++.+.++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 67888998998776 456788999999999999999999999999987644 567777776665544 22
Q ss_pred H----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCchHHHHHHHHHhh
Q 035645 166 F----VEAANYLMEMTEMGLTPISRCFDLVTDGLKNC----GKHDLAEKIEQLEVS 213 (217)
Q Consensus 166 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~ 213 (217)
. ++..++..+.+... +-|...|+.+...+... ++..+|.+++....+
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 2 45666776666654 34566788777777763 344557666655443
No 93
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.77 E-value=1.8e-08 Score=48.38 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDP 43 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 43 (217)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567777777777777777777777777777766
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=7e-06 Score=64.31 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=106.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
++..+...|...|++++|.+++++..+.. |+ +..|..-.+.+.+.|++++|.+.++........ |...-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 45667777889999999999999998874 44 668888899999999999999999999887543 677777888999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 161 GRGGRFVEAANYLMEMTEMGLTPISRCF--------DLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.+.|++++|.+++....+.+..|....+ .....+|.+.|++..|.+-+....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999877654533222 4557889999999999998876654
No 95
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.3e-06 Score=63.72 Aligned_cols=208 Identities=13% Similarity=0.076 Sum_probs=138.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHH
Q 035645 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYK 84 (217)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (217)
|...+......-.+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+. .+....+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 344556666666777777888888888888877653 445555555555777777766666666666554 333456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH----------------------------------HHhcCC
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG----------------------------------AFRRGQ 130 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------------------------------~~~~g~ 130 (217)
++.--|...|+..+|.+.|.+....+-. -...|-.+... |.+.++
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc
Confidence 7776677777777777777665433211 11233333333 455556
Q ss_pred hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH----c--CCCCChhhHHHHHHHHHhcCCchHH
Q 035645 131 FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE----M--GLTPISRCFDLVTDGLKNCGKHDLA 204 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~--~~~~~~~~~~~l~~~~~~~~~~~~a 204 (217)
.+.|..+|.....- .+-|+...+-+.-.....+.+.+|..+|+.... . .......+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 66666666655433 233567777777777788999999999988762 1 1113567899999999999999999
Q ss_pred HHHHHHHhhhcC
Q 035645 205 EKIEQLEVSLRS 216 (217)
Q Consensus 205 ~~~~~~~~~~~~ 216 (217)
...++....+.|
T Consensus 475 I~~~q~aL~l~~ 486 (611)
T KOG1173|consen 475 IDYYQKALLLSP 486 (611)
T ss_pred HHHHHHHHHcCC
Confidence 999999887765
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.7e-06 Score=64.65 Aligned_cols=192 Identities=17% Similarity=0.161 Sum_probs=126.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
..+.+.|++.+|.-.|+..++.... +...|..|....+..++-..|+..+.+..+... -+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 3456788899999999998887533 778899998888888888899999988887532 25566777777777777666
Q ss_pred HHHHHHHHHHhC------------------------------------------CCCCCcccHHHHHHHHHhcCChHHHH
Q 035645 98 EAFRLLHNLVED------------------------------------------GHNPFPSLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 98 ~a~~~~~~~~~~------------------------------------------~~~~~~~~~~~ll~~~~~~g~~~~a~ 135 (217)
.|.+.++.-... +..+|+.+...|--.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 676666544322 11134444445555555666677777
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS-RCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
+.|+..+... +-|..+||-|...++...+.++|+..|++.++. .|.- .+...|.-+|...|.+++|.+.|-.+..+
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 7777666542 224567777777777777777777777766653 3432 23444556666777777776666554443
No 97
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.9e-05 Score=55.35 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
....-...|...+++++|++..... -+....-.=+..+.+..+++-|...+++|.+.. +..|.+.|..++.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv 180 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWV 180 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHH
Confidence 3334444566667777776665541 122222233334556666666666666666543 3445554544443
Q ss_pred h----cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 127 R----RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 127 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
+ .+.+..|.-+|++|.++ .+|+..+.+-...++...|++++|..++++.....
T Consensus 181 ~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3 23466666666666553 45666666666666666677777777766666543
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=2e-06 Score=55.44 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC
Q 035645 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 163 (217)
..+...+...|++++|...|+.....+ +.+...+..+...+.+.|++++|...++.....+ +.+..++..+...+...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 334444444444444444444444332 2233344444444444444444444444443332 22334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 035645 164 GRFVEAANYLMEMTE 178 (217)
Q Consensus 164 g~~~~a~~~~~~~~~ 178 (217)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555554444444
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=6.7e-07 Score=57.69 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=90.8
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 102 LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
.+++....+ +.+......+...+...|++++|.+.+......+ +.+...+..+...+...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 455555543 2234556677788899999999999999998764 4477888899999999999999999999988765
Q ss_pred CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 182 TPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+.+...+..+..++...|++++|.+.++...++.|
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44667788889999999999999999999887765
No 100
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.71 E-value=1.8e-05 Score=62.13 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
|-....-+...|++..|..++....+.... +...|-..+..-..+.+++.|..+|.+... ..|+...|..-+..--.
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHH
Confidence 333333444455555555555555444222 444555555555555555555555555543 23445555554444445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAAN 171 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 171 (217)
.+..++|.+++++.++. .|+ ...|-.+-+.+-+.++.+.|.+.|..=.+. ++-.+..|-.+...--+.|.+-.|..
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 55555555555555443 222 234444445555555555555554433222 22234555555555556666666777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 172 YLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
+++...-.+ +-+...|-..|+.=.+.|+.+.|+.+..++.+
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 766665544 33555677777777777777777776655543
No 101
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.70 E-value=4.4e-08 Score=47.28 Aligned_cols=31 Identities=29% Similarity=0.658 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 035645 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148 (217)
Q Consensus 118 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 148 (217)
|+.++.+|++.|++++|.++|.+|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3333333333333333333333333333333
No 102
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=2.3e-06 Score=64.54 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
...++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|++++++..+.. +.+......-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456666667788888888888888764 44 34457777777788888888888887542 3356667777777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
.++.+.|..+.+++.+.. +-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888763 3334588888888888888888888887654
No 103
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.67 E-value=1.7e-05 Score=62.36 Aligned_cols=94 Identities=12% Similarity=-0.070 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|-..+..-....++++|..+|.+.... .|+...|.--+..-.-.+..++|++++++..+. ++.-...|-.+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 5667888888888888899999988888764 466777766666666677888888888777664 2222345555555
Q ss_pred HHHhcCCHHHHHHHHHH
Q 035645 89 AVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~ 105 (217)
.+-+.++++.|...|..
T Consensus 694 i~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55555555555555443
No 104
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.65 E-value=5.8e-08 Score=46.55 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 183 (217)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 105
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.64 E-value=5.8e-06 Score=62.44 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 49 NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
..++..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 355666667788888888888887653 44 34456777777777888888888877653 33455555566677888
Q ss_pred CChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 129 GQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 129 g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
++++.|..+.+++.+. .|+ -.+|..|..+|...|+++.|.-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888765 444 4588888888888888888887777654
No 106
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.5e-05 Score=60.29 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=55.8
Q ss_pred HhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChHHH
Q 035645 56 CKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 134 (217)
...|++++|+..++.+... .+-|..........+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++++|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555555555555443 2223333344445555555555555555555544 222 23333444555555555555
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
..+++..... .+.|+..|..|..+|...|+..++.....+.
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 5555554433 2334555555555555555444444444333
No 107
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.64 E-value=1.1e-06 Score=53.33 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------chhHHHHHHHHHHhcCCCcchhhHH
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGS-DPDLETFNSLIETICKSG--------EVEFCVEMYYSVCKLGSCADVSTYK 84 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (217)
..-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555556777777777777777777 677777777776665532 1234566666666666666666666
Q ss_pred HHHHHHHh
Q 035645 85 ILIPAVSK 92 (217)
Q Consensus 85 ~ll~~~~~ 92 (217)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=5.6e-05 Score=57.35 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=101.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHhcCCHHH
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD-VSTYKILIPAVSKAGMIDE 98 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 98 (217)
+...|+++.|+..++.+... .+-|...+......+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44668888888888887765 2234455556677888888888888888888764 455 4556677788888888888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 99 AFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
|+.+++...... +-|+..|..|.++|...|+..++..-..+ .+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 888888877664 55778888888888888888777665554 34457888888887777665
Q ss_pred c
Q 035645 179 M 179 (217)
Q Consensus 179 ~ 179 (217)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 109
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=5.2e-06 Score=54.28 Aligned_cols=125 Identities=19% Similarity=0.180 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhHHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF---PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN--RPVYTTLI 157 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li 157 (217)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+ ....-.+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3566666666666666543 111 12222344556667777777777777766542222 12333455
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
..+...|++++|...++...... .....+....++|.+.|++++|.+.|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66667777777777775533222 23345556677777777777777776653
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.59 E-value=7.9e-06 Score=53.45 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch--hhHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDP--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV--STYKILIP 88 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~ 88 (217)
|..++..+ ..++...+...++.+.+..... .....-.+...+...|++++|...|+........|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344433 2455555555555554432110 0112222334444555555555555555443311111 12223444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFS 139 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 139 (217)
.+...|++++|...++..... ......+...-.++.+.|++++|...|+
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444555555555555432211 1122233334444555555555555444
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.3e-05 Score=54.98 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh-
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK- 92 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~- 92 (217)
..-...|.+.|++++|.+..... . +......=...+.+..+++-|.+.+++|.+. .+..|.+.|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL 182 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence 33455688999999999987762 1 3333334445567788999999999999874 366677766666654
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH-HH
Q 035645 93 ---AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF-VE 168 (217)
Q Consensus 93 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~ 168 (217)
.+.+.+|.-+|++|.+. .+|+..+.+-...++...|++++|..++++...+... ++.+...+|..-...|.. +-
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence 46789999999999875 3788999999999999999999999999999887544 566666666655556654 44
Q ss_pred HHHHHHHHHHc
Q 035645 169 AANYLMEMTEM 179 (217)
Q Consensus 169 a~~~~~~~~~~ 179 (217)
..+.+..+...
T Consensus 261 ~~r~l~QLk~~ 271 (299)
T KOG3081|consen 261 TERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHhc
Confidence 55666666654
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=2.6e-05 Score=60.15 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=135.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHH-----------------
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC----------------- 72 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------------- 72 (217)
...|--|.......++-..|+..+.+..+... -|....-.|.-.|...|.-.+|++.++.-+
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~ 397 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENED 397 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccc
Confidence 44555555555556666666666666655431 144444455555555554444444443332
Q ss_pred -------------------------hcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 035645 73 -------------------------KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127 (217)
Q Consensus 73 -------------------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (217)
..+..+|..+...|.-.|.-.|++++|.+.|+..+... +-|...||-|-..++.
T Consensus 398 ~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 398 FENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLAN 476 (579)
T ss_pred ccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcC
Confidence 22223677788888888999999999999999999875 5567899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH---c------CCCCChhhHHHHHHHHHh
Q 035645 128 RGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTE---M------GLTPISRCFDLVTDGLKN 197 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~~~~~l~~~~~~ 197 (217)
..+.++|..-|.+.++. .|+ +.+...|.-+|...|.+++|.+.|-..+. . +..++..+|..|=.++.-
T Consensus 477 ~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~ 554 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA 554 (579)
T ss_pred CcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 99999999999999876 555 56666777889999999999998876552 2 112345678888888888
Q ss_pred cCCchHHHHH
Q 035645 198 CGKHDLAEKI 207 (217)
Q Consensus 198 ~~~~~~a~~~ 207 (217)
.++.|.+.+.
T Consensus 555 ~~~~D~l~~a 564 (579)
T KOG1125|consen 555 MNRSDLLQEA 564 (579)
T ss_pred cCCchHHHHh
Confidence 8888865554
No 113
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.6e-05 Score=58.14 Aligned_cols=190 Identities=13% Similarity=0.041 Sum_probs=117.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHH
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEA 99 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (217)
....++++.|+.+-++.+.... -+...+-.-...+...++.++|.-.|+..+... +-+...|.-|+..|...|++.+|
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHH
Confidence 3344455555555555544321 133333333445556667777777776665531 12456677777777777777776
Q ss_pred HHHHHHHHhCCCCCCcccHHHHH-HHHHh-cCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 100 FRLLHNLVEDGHNPFPSLYAPII-KGAFR-RGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll-~~~~~-~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
.-+-+...+. ++.+..+.+.+- ..+.- -.--++|..++++-... .|+ ....+.+...+...|..++++.++++-
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 6655544332 122333333221 22221 12245566666655443 344 456667777788899999999999887
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 177 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.. ..||....+.|.+.+...+.+.+|.+.|..+.+++|
T Consensus 465 L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 465 LI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred Hh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 76 368999999999999999999999999999988876
No 114
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.57 E-value=1.6e-06 Score=52.56 Aligned_cols=77 Identities=13% Similarity=0.296 Sum_probs=47.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC-CCCHhHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCCCChhhHHHH
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKGH-PPNRPVYTTLITMCGRGG--------RFVEAANYLMEMTEMGLTPISRCFDLV 191 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (217)
.|.-+...+++.....+|..++..|+ .|+..+|+.++.+.++.. +.-....++++|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 666666666666655432 234556666777766777777777777
Q ss_pred HHHHHh
Q 035645 192 TDGLKN 197 (217)
Q Consensus 192 ~~~~~~ 197 (217)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766654
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=7.7e-05 Score=52.07 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=128.1
Q ss_pred CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHH
Q 035645 6 FNPPVRG-RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYK 84 (217)
Q Consensus 6 ~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (217)
..++..+ |..++-+....|+.+.|...++++..+ ++-+..+-..-...+-..|++++|+++|+.+.+.. +.|..++-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH
Confidence 4556544 666777888899999999999998876 33233333333333455789999999999998875 44677787
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC-
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG- 163 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 163 (217)
.-+.+.-..|+.-+|++-++...+. +..|...|.-+...|...|++++|.-+++++.-.. +.++..+..+...+.-.
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHh
Confidence 7777888888888999999888876 46789999999999999999999999999998652 23455555565554433
Q ss_pred --CCHHHHHHHHHHHHHcC
Q 035645 164 --GRFVEAANYLMEMTEMG 180 (217)
Q Consensus 164 --g~~~~a~~~~~~~~~~~ 180 (217)
.+.+.+.++|....+..
T Consensus 203 g~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLN 221 (289)
T ss_pred hHHHHHHHHHHHHHHHHhC
Confidence 35667888888777654
No 116
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.54 E-value=1.6e-07 Score=43.94 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGS 41 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 41 (217)
+||+++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.46 E-value=2.1e-05 Score=49.31 Aligned_cols=98 Identities=15% Similarity=0.059 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--cchhhHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSD--PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC--ADVSTYKILI 87 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 87 (217)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|++++|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555556666666666666666543211 11234444555666666666666666665542211 1133455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 035645 88 PAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555666666666666665554
No 118
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.00015 Score=55.25 Aligned_cols=188 Identities=12% Similarity=0.092 Sum_probs=136.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHH
Q 035645 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAF 100 (217)
Q Consensus 21 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (217)
...+++..|..+|++.+.-. ..+...|.-.+.+=.++.....|..+|++....-.. -...|-..+..=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHH
Confidence 34567778889999888755 336777777888888888899999999988764222 2234555555556678899999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 035645 101 RLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM- 179 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 179 (217)
++|.+-.+- .|+..+|.+.|+.=.+...++.|..+|+...-- .|+..+|--...---+.|....+..++....+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999887765 688999999999999999999999999887653 588888888888888889998888888877652
Q ss_pred CC-CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 180 GL-TPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 180 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
|- .-+...|.+...-=.++..++.|.-+++.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112223333333334567777777777776543
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.43 E-value=6.9e-06 Score=48.80 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC
Q 035645 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 163 (217)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...+....... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344444555555555555555554432 1222344444555555555555555555544432 11223444444455555
Q ss_pred CCHHHHHHHHHHHH
Q 035645 164 GRFVEAANYLMEMT 177 (217)
Q Consensus 164 g~~~~a~~~~~~~~ 177 (217)
|++++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555554443
No 120
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.0001 Score=55.10 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 187 CFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
....+.+.+...|..+.+..+++..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHH
Confidence 3444555555556666665555544
No 121
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=7.8e-05 Score=53.45 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=79.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch
Q 035645 1 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV 80 (217)
Q Consensus 1 M~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (217)
|...|+....--+++.+..+.+..+++.|++++..-.++. +.+....+.+..+|....++..|-..|+++... .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 4445666655668889999999999999999999887764 227788889999999999999999999999764 3544
Q ss_pred hhHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 035645 81 STYKI-LIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 81 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
.-|.. -...+.+.+.+-+|.++...|.+
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 44432 23445566777777777776654
No 122
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.40 E-value=1.4e-05 Score=47.43 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
+..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555555666666666666555432 1233445555555555566666666665554432 1223445555555555
Q ss_pred cCCHHHHHHHHHHHH
Q 035645 93 AGMIDEAFRLLHNLV 107 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~ 107 (217)
.|++++|...+....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555544
No 123
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.40 E-value=2.4e-05 Score=57.00 Aligned_cols=131 Identities=8% Similarity=0.002 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIET-ICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
.+|..+|...-+.+..+.|..+|.+.++.+ ..+...|...... +.-.++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468899999999999999999999998653 2345555555444 33457777799999999876 66688889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
+.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+..+...+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999866 23222 48999999999999999999999988765
No 124
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.39 E-value=6.3e-07 Score=41.83 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=6.3
Q ss_pred HHHHHhcCChHHHHHHHH
Q 035645 122 IKGAFRRGQFDDAFCFFS 139 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~ 139 (217)
+++|++.|++++|.++|+
T Consensus 7 i~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFD 24 (31)
T ss_pred HHHHHccchHHHHHHHHH
Confidence 333333333333333333
No 125
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=3.3e-05 Score=56.54 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=126.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH-----HHHhcCchhHHHHHHHHHHhcCCCcch-hhHHHHH
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIE-----TICKSGEVEFCVEMYYSVCKLGSCADV-STYKILI 87 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll 87 (217)
-.++-.|.+.+++.+|..+.+++.. ..|-......+.. -........-|.+.|+-.-+++..-|. .--.++.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 3455567889999999998877632 1122222221111 112223355677777766665554443 3344566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
..+.-..++++++-.++.+...-...|...+ .+.++.+..|++.+|+++|-.+....++.+..-.+.|..+|.+.+.++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 6666677888988888888776443444444 477899999999999999987765545533344445677888999999
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 168 EAANYLMEMTEMGLTPIS-RCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.|++++-++.. ..+. .....+..-|.+++.+--|-+.|+.+..++|
T Consensus 446 lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 446 LAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 99888754332 2222 2344556778888888888888888877765
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=1.8e-05 Score=62.67 Aligned_cols=162 Identities=15% Similarity=0.074 Sum_probs=129.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
+||...|..+.+......-+++|.++.+..-.+ .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~ 525 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGL 525 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhc
Confidence 578888999999888888899999988875322 22233333345789999999999876643 2356788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
.-+..+.++++.|.+.|....... +.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-.....|.+
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccH
Confidence 888999999999999999887753 3345689999999999999999999999998876 44667888888888999999
Q ss_pred HHHHHHHHHHHH
Q 035645 167 VEAANYLMEMTE 178 (217)
Q Consensus 167 ~~a~~~~~~~~~ 178 (217)
++|.+.+..+.+
T Consensus 604 eda~~A~~rll~ 615 (777)
T KOG1128|consen 604 EDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 127
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00017 Score=56.05 Aligned_cols=185 Identities=13% Similarity=0.109 Sum_probs=114.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
..-+=++.+.+.|++++|.+..+++...+ +-+...+..-+-+..+.+++++|+.+.+.-.. ...+...+---.-+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHH
Confidence 34445677788899999999999998876 44566677777788999999999955443221 0111111122233455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 170 (217)
+.+..++|...++-.. +.+..+...-...+.+.|++++|..+|..+.+++...- ...-..++.+-.. ..+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~- 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV- 161 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-
Confidence 7899999999988221 12334566667889999999999999999987754311 1111222221111 111
Q ss_pred HHHHHHHHcCCCCChhhHHH---HHHHHHhcCCchHHHHHHHHHh
Q 035645 171 NYLMEMTEMGLTPISRCFDL---VTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
+ .+......| ..+|.. ....+...|++.+|+++++...
T Consensus 162 ~---~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 162 Q---LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred H---HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1 122222233 223443 3455668899999999998873
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.36 E-value=1.7e-06 Score=50.87 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 035645 23 AGYLESAKQMVNKMIKQGSD-PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (217)
.|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|+.++++ .+.+. .+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777664321 2334444566777777777777777766 22211 122333344666777777777777
Q ss_pred HHHH
Q 035645 102 LLHN 105 (217)
Q Consensus 102 ~~~~ 105 (217)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 129
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.36 E-value=1.3e-05 Score=54.66 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=65.9
Q ss_pred CcchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----------------ChHHHH
Q 035645 77 CADVSTYKILIPAVSKA-----GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG----------------QFDDAF 135 (217)
Q Consensus 77 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------------~~~~a~ 135 (217)
..+..+|..+++.|.+. |..+-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 46888999999988765 667778888888889999889999999998875421 234566
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhcCCC
Q 035645 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGR 165 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 165 (217)
+++++|...|+.||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 666667666777777777777766665554
No 130
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.36 E-value=2.3e-05 Score=57.03 Aligned_cols=144 Identities=10% Similarity=0.141 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA-VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (217)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|-..... +...++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999887543 2244455554444 33356777799999988875 34566778888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 035645 125 AFRRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (217)
+...|+.+.|..+|+..... +.++. ..|...+..-.+.|+.+.+.++.+++.+. .|+......+++-
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 89999999999999988765 33222 48888888888889999999888888874 3444444444443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.33 E-value=7.9e-05 Score=61.73 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=97.7
Q ss_pred CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------
Q 035645 40 GSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV-STYKILIPAVSKAGMIDEAFRLLHNLVEDG------- 110 (217)
Q Consensus 40 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 110 (217)
+..| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .+...-
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 3444 5668889999999999999999999977664 3443 4444444467777777666544 332221
Q ss_pred -----------CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 035645 111 -----------HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179 (217)
Q Consensus 111 -----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 179 (217)
..-+..++-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|+.. ++++|.+++.+....
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 01122466677788888899999999999999886 44788999999999888 999999998877653
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=4e-05 Score=48.02 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCHhHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHN--PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHP--PNRPVYTTL 156 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l 156 (217)
.++..+...+.+.|++++|...|..+.+.... .....+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667777888899999999999998865311 11345666888899999999999999988765211 124567777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 157 ITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 157 i~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
..++...|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788888999999999999888764
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.32 E-value=5.1e-05 Score=50.95 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNP--FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3444444444455555555555444332111 11244444455555555555555555444331 11223333333333
Q ss_pred h-------cCCCHHHHHHHHHH
Q 035645 161 G-------RGGRFVEAANYLME 175 (217)
Q Consensus 161 ~-------~~g~~~~a~~~~~~ 175 (217)
. ..|+++.|...+++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHH
Confidence 3 55666655544443
No 134
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.32 E-value=0.00077 Score=54.15 Aligned_cols=127 Identities=18% Similarity=0.067 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhcC
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP-NRPVYTTLITMCGRG 163 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 163 (217)
.....+.+.+..++|...+.+..... +.....|...-..+...|.+++|.+.|...... .| ++....++...+.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHh
Confidence 33344445555555555555554432 233445555555667778888888888877654 34 367788899999999
Q ss_pred CCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 164 GRFVEAAN--YLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 164 g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|-+.|+...+++
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 98888888 999999877 5678899999999999999999999999888775
No 135
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.31 E-value=0.00044 Score=49.27 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=45.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 156 LITMCGRGGRFVEAANYLMEMTEM--GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 156 li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
+..-|.+.|.+.-|..-++.+.+. +.+........++.+|...|..++|.++.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445678889999999999998863 334455677889999999999999999887654
No 136
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.30 E-value=3.2e-05 Score=51.94 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHh-hCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc--chhhHHHHHHHHHhcCCHHHHHHH
Q 035645 26 LESAKQMVNKMI-KQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA--DVSTYKILIPAVSKAGMIDEAFRL 102 (217)
Q Consensus 26 ~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 102 (217)
+..+...+..+. ..+..-....|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555553 33322245566777888888999999999999887643222 235788888899999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHH-------hcCChHHHHHHHHHH
Q 035645 103 LHNLVEDGHNPFPSLYAPIIKGAF-------RRGQFDDAFCFFSEI 141 (217)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~~~a~~~~~~~ 141 (217)
+++..... +....++..+...+. ..|+++.|...+.+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99888653 233455666666666 667777655555443
No 137
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.29 E-value=1e-05 Score=55.21 Aligned_cols=88 Identities=22% Similarity=0.267 Sum_probs=57.9
Q ss_pred ChhhHHHHHHHHHh-----cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhc----------------CCHHHHHHH
Q 035645 44 DLETFNSLIETICK-----SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKA----------------GMIDEAFRL 102 (217)
Q Consensus 44 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 102 (217)
+..+|..++..|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 45555555555543 345555566666666666666667777766665432 223567888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 035645 103 LHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131 (217)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 131 (217)
+++|...|+.||..++..+++.+++.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 88888888888888888888888777753
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=2.1e-06 Score=50.51 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=45.3
Q ss_pred cCchhHHHHHHHHHHhcCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH
Q 035645 58 SGEVEFCVEMYYSVCKLGSC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFC 136 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 136 (217)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777654321 1334444466777777777777777766 2221 1122333344666677777777777
Q ss_pred HHHH
Q 035645 137 FFSE 140 (217)
Q Consensus 137 ~~~~ 140 (217)
++.+
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.27 E-value=0.00014 Score=48.98 Aligned_cols=90 Identities=18% Similarity=0.084 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
...+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566777777888888888888888876433222 3567777888888888888888888877653 22345556666
Q ss_pred HHHHhcCChHHHH
Q 035645 123 KGAFRRGQFDDAF 135 (217)
Q Consensus 123 ~~~~~~g~~~~a~ 135 (217)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666644433
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=0.00028 Score=46.03 Aligned_cols=96 Identities=7% Similarity=-0.088 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
..-.+...+...|++++|..+|+.+..... -+..-|..|..++...|++++|+..|......+ +-++..+-.+-.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 334455556677888888888877766422 244556667777777788888888888777665 346677777777777
Q ss_pred hcCChHHHHHHHHHHHhc
Q 035645 127 RRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~ 144 (217)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888877766654
No 141
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.0011 Score=50.67 Aligned_cols=202 Identities=12% Similarity=0.048 Sum_probs=140.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHHHH--------HHHHhcCchhHHHHHHHHHHhcCCC
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDL--ETFNSLI--------ETICKSGEVEFCVEMYYSVCKLGSC 77 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll--------~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (217)
.|-.+|-..+..-...|+.+...++|++.+.. ++|-. ..|.-.| -.=....+.+.+.++|+...+. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 35567777777778889999999999998876 44422 1222222 1223467888889999888874 55
Q ss_pred cchhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHH
Q 035645 78 ADVSTYKILIPAVS----KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVY 153 (217)
Q Consensus 78 ~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 153 (217)
....||..+--.|. +..++..|.+++.... |.-|-..++-..|..=.+.+++|.+..+|+.....+. -+..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHH
Confidence 56666666555553 5677888888877665 3457777777788888888888888888888887753 366777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 154 TTLITMCGRGGRFVEAANYLMEMTEMGL-TPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 154 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
......-...|+.+.|..+|.-.++... .-....+.+-|+-=...|.++.|..+++...+.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 7777777788888888888887775321 112234555555556788888888888877654
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.23 E-value=7.2e-05 Score=48.74 Aligned_cols=98 Identities=8% Similarity=-0.031 Sum_probs=83.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
....-.+...+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|+..|........ -|...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 344556677788999999999999999886533 677788899999999999999999999988653 477889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 035645 90 VSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (217)
+...|+.+.|.+.|+.....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00048 Score=53.03 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=138.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH-------
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI------- 85 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 85 (217)
...+..+..+..+++.+.+-+....+.. -+..-++....+|...|.+.+....-+...+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456777778888899998888887764 35666677777888888888877777666655533 2222332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH-------------------------HHHHHHHHhcCChHHHHHHHHH
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY-------------------------APIIKGAFRRGQFDDAFCFFSE 140 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~g~~~~a~~~~~~ 140 (217)
+..+|.+.++++.+...|++.......|+...- -.--..+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 334566667788888888876544333332110 0112336788899999999999
Q ss_pred HHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 141 IKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 141 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++... +-|...|+.-.-+|.+.|.+..|.+-.+...+.. ++....|..=..++.-..+++.|.+.|+...+++|
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 88875 4568889999999999999998888777777654 33444566666677777788888888888877664
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=9.5e-05 Score=55.79 Aligned_cols=93 Identities=13% Similarity=-0.003 Sum_probs=77.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM 95 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (217)
-...+...|+++.|++.|++.++... -+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 34566788999999999999988643 367788888999999999999999999998753 2356778888999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 035645 96 IDEAFRLLHNLVEDG 110 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~ 110 (217)
+++|...|++..+.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988764
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=0.00012 Score=55.33 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=68.8
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 131 (217)
...+...|++++|++.|++..+... .+...|..+..+|...|++++|...+++..+.+ +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4456677888888888888877532 356677777888888888888888888887764 33556777777888888888
Q ss_pred HHHHHHHHHHHhc
Q 035645 132 DDAFCFFSEIKIK 144 (217)
Q Consensus 132 ~~a~~~~~~~~~~ 144 (217)
++|...|+.....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887765
No 146
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.19 E-value=0.0013 Score=56.09 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=131.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCC--C-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc--CCCc--ch
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIK----QGSD--P-DLETFNSLIETICKSGEVEFCVEMYYSVCKL--GSCA--DV 80 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~ 80 (217)
++..+...+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+++.... ...+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 445566677889999999998887654 2221 1 2233445566677789999999998877542 1112 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCcccH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---Hh
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-PFPSLY-----APIIKGAFRRGQFDDAFCFFSEIKIKGHPPN---RP 151 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~ 151 (217)
..+..+...+...|+.++|...+.+....... .....+ ...+..+...|+.+.|...+........... ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 44555666788899999999998887542101 111111 1122445568899999988776543211111 11
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEM----GLTPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.+..+..++...|++++|...+...... |..++ ..+...+..++.+.|+.++|.+.+....++
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2345667788899999999999887642 33322 246667788899999999999999887664
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.0015 Score=50.65 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChHHHHHHHH
Q 035645 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP-FPSLYAPIIKGAFRRGQFDDAFCFFS 139 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 139 (217)
.+.....++++...-..--..+|-.+++.--+..=++.|..+|.+..+.+..+ +..++++++..+| .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55666667776543222223457777777777777888899999988876665 5667777777666 577888888888
Q ss_pred HHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 140 EIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS--RCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 140 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.=.+. +..++.--...++-+...++-..+..+|++....++.||. .+|..++.-=..-|+...+.++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65443 2334455567788888888888899999988877666554 5888888888888988888888776654
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=0.00026 Score=47.67 Aligned_cols=91 Identities=15% Similarity=0.049 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD--LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577888889999999999999999987543332 4678889999999999999999999998753 22456677777
Q ss_pred HHHHhcCCHHHHHH
Q 035645 88 PAVSKAGMIDEAFR 101 (217)
Q Consensus 88 ~~~~~~~~~~~a~~ 101 (217)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 78888777555443
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=0.00072 Score=49.44 Aligned_cols=192 Identities=15% Similarity=0.130 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHh----cCCCcc--
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCK----LGSCAD-- 79 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-- 79 (217)
..|......|...|++++|.+.|.+.... +-+. -...|.....+|.+. ++++|++.+++..+ .| .|+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 45677777777888888888888776431 2111 122344444444443 77888887776643 22 222
Q ss_pred hhhHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----
Q 035645 80 VSTYKILIPAVSKA-GMIDEAFRLLHNLVED----GHNPF--PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHP----- 147 (217)
Q Consensus 80 ~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----- 147 (217)
...+..+...|... |++++|.+.|++..+. + .+. ..++..+...+.+.|++++|.++|++....-..
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 24566677777777 7888888888776532 2 111 235666777788888888888888877654222
Q ss_pred CCH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCCchHHHHHH
Q 035645 148 PNR-PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR------CFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 148 ~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
.+. ..|-..+-++...|++-.|.+.+++.... .|.-. ....|+.+| +.|+.+...+..
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~--~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av 257 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQ--DPSFASSREYKFLEDLLEAY-EEGDVEAFTEAV 257 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT--STTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHC
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 111 12222333455667888888887776653 35553 234455555 345555544443
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.17 E-value=0.0003 Score=55.60 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
..|..+.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++.+..++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 334433333333444455554444444433 344444444444444455555544444444443
No 151
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.00025 Score=57.07 Aligned_cols=110 Identities=23% Similarity=0.320 Sum_probs=81.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCC
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR 165 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 165 (217)
.+.+.....+|.+|+.+++.+..++. -..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34555667888899999988887642 3456778888999999999999998743 246677888999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 166 FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
|+.|.++-.+.. |.......|-.-.+-+-.+|++.+|++++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 999988876543 33455566666666677777777777664
No 152
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00014 Score=52.14 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=26.5
Q ss_pred HhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 035645 56 CKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 110 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (217)
.+.|+++.|++-|+...+-+.--....||..+ +..+.++.+.|.+...++.++|
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 34555666666665554432222334444433 3334455556666555555544
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.12 E-value=2e-05 Score=44.33 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=50.1
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CchHHHHHHHHHhhhcC
Q 035645 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG-KHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 216 (217)
+..+|..+...+...|++++|...|.+..+.. +-+...|..+..++...| ++++|.+.++...+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777888888888888888877764 235567777788888887 68888888888777765
No 154
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.11 E-value=0.0013 Score=56.06 Aligned_cols=202 Identities=16% Similarity=0.049 Sum_probs=128.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCC--c-c
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQ----GSD-PDLETFNSLIETICKSGEVEFCVEMYYSVCKL----GSC--A-D 79 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 79 (217)
..+.+...+...|+++.|...+++.... |.. +...++..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3455666777899999999998887642 111 11234556677788899999999998876432 211 1 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CcccHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHh--
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDG--HNP--FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG--HPPNRP-- 151 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~-- 151 (217)
...+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|.+.+....... ......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2334556667778899999999988875431 112 12344456667888999999999988875421 111110
Q ss_pred HH--HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 152 VY--TTLITMCGRGGRFVEAANYLMEMTEMGLTPI---SRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 152 ~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.. ...+..+...|+.+.|.+++........... ......+..++...|+.++|...++....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10 1122344567899999988776553211111 11245677788899999999999887764
No 155
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00051 Score=57.09 Aligned_cols=184 Identities=14% Similarity=0.155 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..|+.+..+-.+.|.+.+|.+-|-+. -|+..|..++....+.|.|++-++.+....+....|.+. +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 44556666666666666655554332 255566666666666777766666666555544444433 3566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC--------------------CCCCH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG--------------------HPPNR 150 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~ 150 (217)
.+.++..+..++.. .|+..-...+-.-|...+.++.|.-+|....... -..+.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 66666665554432 2233222333333333333333333332211000 01133
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.||..+-.+|...+.+..| .|-..++.....-..-|+..|...|-+++...+++....+
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 4555555555444433322 1222333445555677888888888888888877665543
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.11 E-value=0.00058 Score=54.03 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=75.9
Q ss_pred CCCChhhHHHHHHHHHhc-----CchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 035645 41 SDPDLETFNSLIETICKS-----GEVEFCVEMYYSVCKLGSCADV-STYKILIPAVSKA--------GMIDEAFRLLHNL 106 (217)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~ 106 (217)
.+.+...|...+.+.... ++.+.|.++|++..+. .|+- ..+..+..++... .++..+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345666666666654332 2255666666666653 3432 2333322222111 1123334444433
Q ss_pred HhCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh
Q 035645 107 VEDG-HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS 185 (217)
Q Consensus 107 ~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 185 (217)
.... ...+..+|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+.+....+ |..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 3321 22334556666555556677777777777776653 566677777777777777777777777666533 444
Q ss_pred hhH
Q 035645 186 RCF 188 (217)
Q Consensus 186 ~~~ 188 (217)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 443
No 157
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00054 Score=56.93 Aligned_cols=181 Identities=14% Similarity=0.051 Sum_probs=118.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
|...|..+++...+.|.|++-.+.+...++..-+|... +.|+-+|++.++..+..++. ..||..-...+.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 56679999999999999999999999888876666555 47888999999988766654 2366666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH------------------------Hhc
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI------------------------KIK 144 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~------------------------~~~ 144 (217)
-|...+.++.|.-+|... .-|..+...+...|+++.|.+.-++. -..
T Consensus 1203 rcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL 1273 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGL 1273 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCc
Confidence 777777777666555432 22444444444444444443332221 111
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 145 GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 145 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
.+.....-...++..|-..|-+++.+.+++.-.... +.....|+.|.-.|.+- +.++..+-++
T Consensus 1274 ~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1274 NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 122334556778899999999999998887544221 23445778777777764 3444444443
No 158
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.03 E-value=0.0018 Score=52.13 Aligned_cols=205 Identities=13% Similarity=0.097 Sum_probs=144.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-chhhHH
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYK 84 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 84 (217)
+.-+...|..+.-+....|+++.+.+.|++....- .-....|..+...+.-.|....|+.+++......-.| +...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44577889999999999999999999999987542 2366788899999999999999999998775543234 344444
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCcccHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCC-C
Q 035645 85 ILIPAVS-KAGMIDEAFRLLHNLVED--GH--NPFPSLYAPIIKGAFRR-----------GQFDDAFCFFSEIKIKGH-P 147 (217)
Q Consensus 85 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~-~ 147 (217)
..-..|. +.+..+++.++-.+..+. +. ......|-.+--+|... ....++.+.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444 356677777776666551 11 12234444444444322 224567777777766543 3
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 148 PNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
|+...| +.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+....
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333333 3345677889999999999999887678888999999999999999999999877654
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=6.2e-05 Score=53.75 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=75.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 167 (217)
-+.+.+++++|+..|.+.++.. +-|..-|..-..+|++.|.++.|.+=.+..+.. .|. ..+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3566788888888888888764 445667778888888888888888777766654 233 578888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLK 196 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (217)
+|.+.|++.++ +.|+-.+|..=+....
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 88888887666 4577777765555443
No 160
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.02 E-value=0.002 Score=50.91 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHH------HHhcCChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDG-HNPFPSLYAPIIKG------AFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
.|..+..+..-.|+...|..+.++..+.. ..|+...|...... ....|..++|.+.+..-... +......-.
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e 223 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence 34444444444555555555555554433 12333333322221 23344444444444433222 111111222
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDL 190 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (217)
.-...+.+.+++++|..++..+.... ||..-|..
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~ 257 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYE 257 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHH
Confidence 23344555666666666666666543 55444443
No 161
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.0037 Score=51.31 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=35.3
Q ss_pred hcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 035645 57 KSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132 (217)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 132 (217)
+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|+..... .|+......+..+|.+.+++.
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 455555555555444333222 4455555555555555555555555555443 233444444445555544443
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.00 E-value=0.0011 Score=41.70 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=42.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc----hhhHHHHHHHHH
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPD--LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD----VSTYKILIPAVS 91 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~ 91 (217)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+++...... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344455666666666666555554332 2234445555555566666666655554421 21 112222233445
Q ss_pred hcCCHHHHHHHHHHHH
Q 035645 92 KAGMIDEAFRLLHNLV 107 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~ 107 (217)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554433
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.0058 Score=50.20 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=111.5
Q ss_pred hHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 12 GRDLLVQGL--LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 12 ~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
.|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|++.... .|+..-...+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFma 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHH
Confidence 345555554 4789999999999888776555 8889999999999999999999999999764 4677777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC----------hHHHHHHHHHHHhcC-CCCCHhHHHHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ----------FDDAFCFFSEIKIKG-HPPNRPVYTTLIT 158 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~-~~~~~~~~~~li~ 158 (217)
|.+.+.+.+-.+.--++-+ +.+-....+-++++...+.-. .--|...++.+.+.+ ---+..-......
T Consensus 120 yvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 8888777653332222222 123334444445544433211 122344444444332 1111222222233
Q ss_pred HHhcCCCHHHHHHHHHHH-HHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 159 MCGRGGRFVEAANYLMEM-TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
.+-..|++++|.+++..- .+.-..-+...-+.-++.+...++|.+..++...+
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344566777777777332 22222222333334444455555555554444333
No 164
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.98 E-value=0.0028 Score=50.37 Aligned_cols=179 Identities=13% Similarity=0.124 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
..|-.-+..+.++|++......|+..+.. .+.--...|...+....+.+-++-++++|++..+. ++..-+-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34555666677788888888888887653 33334557888888888888899999999998773 34447788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCC------CCCCcccHHHHHHHHHhcCChHH---HHHHHHHHHhcCCCCC--HhHHHHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDG------HNPFPSLYAPIIKGAFRRGQFDD---AFCFFSEIKIKGHPPN--RPVYTTLIT 158 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~li~ 158 (217)
+++.+++++|.+.+....... -+.+...|..+....+++.+.-. ...+++.+... -+| ...|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 999999999998888776431 23455667777666666554333 33444444332 244 368899999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 035645 159 MCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN 197 (217)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (217)
.|.+.|++++|..++++....- .+..-|..+.++|..
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 9999999999999998877642 344455666666654
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=0.0012 Score=41.45 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=49.9
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----cccHHHHHHHH
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF----PSLYAPIIKGA 125 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~ 125 (217)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445556667777777777666655433 2344556666666677777777776665442 22 11222233455
Q ss_pred HhcCChHHHHHHHHHHH
Q 035645 126 FRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~ 142 (217)
...|+.++|...+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 56666666666665443
No 166
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.96 E-value=0.0056 Score=48.59 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
..|.....-.+...|+-++|......-....+. +.+.|.++.-.+....++++|+..|......+ +.|...+.-+--.
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslL 118 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLL 118 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 444555555567789999999988887776544 77888888888888899999999999988754 2356677766666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHhHHHHHH------HHHhc
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG-HPPNRPVYTTLI------TMCGR 162 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~ 162 (217)
=++.++++.......++.+.. +.....|..+..++.-.|++..|..+++...+.. -.|+...+.... .....
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 678888988888888887763 2334568888888889999999999999887653 245655555433 23456
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 163 GGRFVEAANYLMEMTEMGLTPISRCF-DLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.|.+++|.+-+..-... ..|...+ ..-...+.+.++.++|..++..+....|
T Consensus 198 ~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred cccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 78888887777554322 2233322 3456667788999999999888776554
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00034 Score=50.10 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=64.6
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHH
Q 035645 55 ICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 134 (217)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+..+..+ +....+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 456677777777777777642 2245556667777777777777777776666654 23356777777777777777777
Q ss_pred HHHHHHHHhcCCCCCHhHHHH
Q 035645 135 FCFFSEIKIKGHPPNRPVYTT 155 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~ 155 (217)
.+.|++.++. .|+-.+|-.
T Consensus 169 ~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHH
Confidence 7777776653 555544443
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.94 E-value=0.0007 Score=56.03 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC-CCcchhhHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-SCADVSTYKILIPA 89 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~ 89 (217)
..|..|...|+...+..+|.+.|+...+.+ ..+...+......|++..+++.|..+.-..-+.. ...-..-|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 457777777777777777888887776654 2266677777788888888888777732222110 00011122234444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH--HHHhcCCCHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI--TMCGRGGRFV 167 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~ 167 (217)
|.+.++..+|...|+...+.. +-|...|..+..+|...|.+..|..+|.+.... .|+ .+|...- ...+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHH
Confidence 566777777777777777664 445667888888888888888888888776654 333 2333322 2235677788
Q ss_pred HHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 168 EAANYLMEMTEM------GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 168 ~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
++...+...... +..--..++-.+...+.-.|-..+|..+++..
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 887777666521 11112233444444444445555555555443
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=4.9e-05 Score=42.57 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=18.9
Q ss_pred cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
.|++++|++.|+++.... +-+......+..+|.+.|++++|..+++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444443321 1133333344444444444444444444443
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=7.2e-05 Score=41.88 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 21 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.+.|++++|.++|+++..... -+...+..+..+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 568999999999999988643 37788889999999999999999999999875 45644444443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=7.4e-05 Score=41.44 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=32.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
...+.+.|++++|...|+.+.+.. +-+...+..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666553 22455555666666666666666666666554
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=0.00012 Score=40.55 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 73 (217)
..+.+.|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555543 11444555555555555555555555555544
No 173
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.88 E-value=0.00066 Score=44.39 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 141 (217)
...++..+...|++++|..+.+.+.... +.+...|..+|.++...|+...|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344445555555555555555555543 344555555555566666555555555554
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.88 E-value=0.0034 Score=43.57 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGS--DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
.-.....+...|++++|.+.|+.+...-. +-.....-.++.++.+.|+++.|...+++..+.-......-+-..+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445566788999999999999987522 2233455677888999999999999999987653221122222222222
Q ss_pred HhcCC-------------HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 035645 91 SKAGM-------------IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157 (217)
Q Consensus 91 ~~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 157 (217)
+.... ..+|... +..++.-|-......+|...+..+.+. =...--.+.
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 21111 1223333 444455555555566666655555432 011122356
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCchHHHH
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMG--LTPISRCFDLVTDGLKNCGKHDLAEK 206 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (217)
..|.+.|.+..|..-++.+.+.- ..........++.+|.+.|..+.+..
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 77889999999999999988642 12233466788999999998885544
No 175
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00044 Score=50.91 Aligned_cols=154 Identities=17% Similarity=0.087 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLL 103 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (217)
....|.+.|+-.-+++..-|.. --.++.+++.-..++++++-.+..+... +.-|...--.+..+++..|.+.+|+++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 4566777777666666555443 3446666777778899999888888765 3334444446788999999999999999
Q ss_pred HHHHhCCCCCCcccH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHH-HHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 104 HNLVEDGHNPFPSLY-APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVY-TTLITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 104 ~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
-++....++ +..+| ..+.++|.+++.++.|++++-.+... .+..+. -.+.+-|.+.+.+--|.+.|+.+...+.
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 888765544 34455 45668889999999999988766432 122333 3344667788998888888888876554
Q ss_pred CC
Q 035645 182 TP 183 (217)
Q Consensus 182 ~~ 183 (217)
.|
T Consensus 493 ~p 494 (557)
T KOG3785|consen 493 TP 494 (557)
T ss_pred Cc
Confidence 33
No 176
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.86 E-value=0.00037 Score=56.08 Aligned_cols=171 Identities=18% Similarity=0.240 Sum_probs=95.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
+.+......|.+|+.+++.+..+. .-..-|..+..-|+..|+++.|.++|-+.- .++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 444555677778888887776553 233446677778888888888888875432 255667788888888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHh----------cC-----------CCCC--HhHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI----------KG-----------HPPN--RPVY 153 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------~~-----------~~~~--~~~~ 153 (217)
+.|.++-.+.... ......|-.-..-.-++|++.+|.++|-.+.. .| ..|+ ..|-
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 8887776654321 22233343333444444444444444321110 00 0111 1233
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 154 TTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 154 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
..+..-+-..|+...|.+-|-+.. -|.+-+..|..++-|++|.++.+
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 444445555566666655543322 25566666777777777776653
No 177
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.84 E-value=0.0026 Score=41.56 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=54.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCChhhHH
Q 035645 117 LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT-----EMGLTPISRCFD 189 (217)
Q Consensus 117 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 189 (217)
+...++..+...|++++|..+...+.... +.+...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45567778889999999999999998773 4578899999999999999999999999886 469999887643
No 178
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.83 E-value=0.0061 Score=44.97 Aligned_cols=196 Identities=11% Similarity=0.061 Sum_probs=144.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM 95 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (217)
.+..+.-.|+...|+....++++-. +-|...+..-..+|...|++..|+.=+....+.. ..+..++..+-..+...|+
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhh
Confidence 4455667799999999999998853 4588888999999999999999998887776542 3466777777888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHH----HH---------HHHHHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHH
Q 035645 96 IDEAFRLLHNLVEDGHNPFPSLYA----PI---------IKGAFRRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITM 159 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~----~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~ 159 (217)
.+.++...++.++.+ ||...+- .+ +......++|.++.+-.+...+....... ..+..+-.+
T Consensus 239 ~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 239 AENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 999999888888763 5543211 11 22345667888888888877766433222 344455666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 160 CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+...+++.+|++...+..+.. +.|..++.-=..+|.-...++.|..=++.+.++++
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 778899999999999888753 23477888888888888889999888888777653
No 179
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=0.00017 Score=40.49 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG-MIDEAFRLLHNLV 107 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~ 107 (217)
.+|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.| ++++|...+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444555555555555555554432 113344444444455554 3555555554443
No 180
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.81 E-value=0.011 Score=47.21 Aligned_cols=200 Identities=12% Similarity=0.085 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC----------
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD---LETFNSLIETICKSGEVEFCVEMYYSVCKLGSC---------- 77 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------- 77 (217)
..|..+...|-..|+++.|..+|++..+-..+.- ..+|..-...=.+..+++.|+++.++.....-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4588999999999999999999999987544322 345666666666778888899888776432111
Q ss_pred c-------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 035645 78 A-------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR 150 (217)
Q Consensus 78 ~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 150 (217)
| +...|...++.--..|-++....+|+.+.+..+- ++...-.....+-.+.-++++.++|++-...=-.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 3455666667667778888888888888876543 2332222333344556677777777754443112332
Q ss_pred -hHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCCCChhhHHHHH--HHHHhcCCchHHHHHHHHHh
Q 035645 151 -PVYTTLITMCG---RGGRFVEAANYLMEMTEMGLTPISRCFDLVT--DGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 151 -~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~ 212 (217)
..|+..+.-+. ..-.++.|..+|++..+ |.+|...-+--|+ .-=-+.|-...|..+++++.
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45665554443 23467888888888888 5555443222121 11224567777777776654
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0062 Score=44.59 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----CCChh-h
Q 035645 121 IIKGAFRR-GQFDDAFCFFSEIKIK----GHPPN--RPVYTTLITMCGRGGRFVEAANYLMEMTEMGL-----TPISR-C 187 (217)
Q Consensus 121 ll~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~-~ 187 (217)
+...|... |+++.|.+.|.+..+. | .+. ..++..+...+.+.|++++|.++|++...... .++.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33444444 5566666666554321 2 111 23444555556666666666666666553221 11111 2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 188 FDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
|-..+-++...|+...|.+.++...+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 222333444456666666666655544
No 182
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.73 E-value=0.0091 Score=44.12 Aligned_cols=198 Identities=13% Similarity=0.068 Sum_probs=123.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH---HHHHHHhcCchhHHHHHHHHHHhcCCCcchhh-HHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNS---LIETICKSGEVEFCVEMYYSVCKLGSCADVST-YKI 85 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 85 (217)
+.-.-.+...+...|++..|+.-|...++- |+..|.. -...|...|+-.-|+.=+++..+ .+||-.. -..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH
Confidence 344555677777888888888888888664 3333433 34566777777777777777776 4566432 223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--c------------ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPF--P------------SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 151 (217)
-...+.+.|.++.|..=|+..++.+..-. . ......+..+.-.|+...|+.....+.+- .+-|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhH
Confidence 34456788888888888888876531110 0 11223344456677788888877777765 244667
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
.+..-..+|...|++..|+.=++...+.. .-+..++-.+-..+..-|+.+.+....+.-..++
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 77777778888888888877666655543 2233444455555666666666665554444443
No 183
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.71 E-value=0.0028 Score=52.70 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCcccHHHHHHH
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-NPFPSLYAPIIKG 124 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~ 124 (217)
..|..|...|...-+...|...|+...+..- .+........+.|.+..+++.|..+.-..-+... ..-...|...--.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3556666666665566666666666655321 2445556666667777777766666222111100 0001112222223
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCchH
Q 035645 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR-CFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 203 (217)
|.+.++...|..-|+...... +-|...|..+..+|.+.|++..|.++|.+.... .|+.. .---..-.-+..|++++
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 445566666666666655442 225667777777777777777777777766553 34332 11112222345667777
Q ss_pred HHHHHHHHhh
Q 035645 204 AEKIEQLEVS 213 (217)
Q Consensus 204 a~~~~~~~~~ 213 (217)
|...++++..
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 184
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.015 Score=45.23 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=101.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHHhcC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV-STYKILIPAVSKAG 94 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~ 94 (217)
+..++.+.++++.++..|++.......|+. ..+....+++....+...-.+ |.. .-...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhcc
Confidence 344566677788888888876554333222 233344555655555554432 322 22233366777889
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLM 174 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 174 (217)
++..|+..|.++.+.+ +-|...|....-+|.+.|.+..|+.--+...+.. ++....|.-=..++....++++|.+.|.
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988886 6678889999999999999999888877777662 2234555555555666678888888888
Q ss_pred HHHHcC
Q 035645 175 EMTEMG 180 (217)
Q Consensus 175 ~~~~~~ 180 (217)
+-++.+
T Consensus 451 eale~d 456 (539)
T KOG0548|consen 451 EALELD 456 (539)
T ss_pred HHHhcC
Confidence 877654
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.68 E-value=0.0027 Score=45.79 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCcccHHHH
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSCADV----STYKILIPAVSKAGMIDEAFRLLHNLVEDGH--NPFPSLYAPI 121 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 121 (217)
|...+....+.|++++|+..|+.+.+.. |+. .++.-+..+|...|++++|...|+.+.+... +.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344455555555555555432 221 3444555555555555555555555554310 1112233333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 035645 122 IKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
...+...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555566666665555544
No 186
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.68 E-value=0.00078 Score=42.69 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=53.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
|..++..+|.++++.|+.+....+++..-.- .++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456666666777777766666666544321 111100 0000 1122334566666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh-CCCCCCcccHHHHHHHHHhc
Q 035645 89 AVSKAGMIDEAFRLLHNLVE-DGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~ 128 (217)
+|+..+++..|.++.+.+.+ .+++.+..+|..|++-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 66666666666666666553 25555555666666554433
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0089 Score=43.16 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=65.8
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 78 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG---QFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
-|...|-.|..+|...|+.+.|..-|....+.. .++...+..+..++.... ...++..+|+++..... -|+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence 366777777777777777777777777776653 334445555554443322 34567777777776532 2566666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
.|...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66677777777777777777777654
No 188
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.65 E-value=0.0016 Score=41.24 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHH
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMT-EMGLTPISRCFDLVTDGLK 196 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 196 (217)
..|+..+..+++.+|+..|++..|.++.+.+. ..+++.+..+|..|++-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34555555555555555555555555555554 2344444555555554443
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.63 E-value=0.015 Score=43.88 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=32.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHh---cCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQG---SDPDLETFNSLIETICK---SGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
++-.|....+++...++.+.+.... +.-+...-....-++.+ .|+.++|++++..+....-.++..+|..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555555555555555554321 00011111122333334 55555555555553333334455555555544
Q ss_pred H
Q 035645 90 V 90 (217)
Q Consensus 90 ~ 90 (217)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.62 E-value=0.0027 Score=45.81 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=39.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcC
Q 035645 126 FRRGQFDDAFCFFSEIKIKGHPPN----RPVYTTLITMCGRGGRFVEAANYLMEMTEMGL--TPISRCFDLVTDGLKNCG 199 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 199 (217)
.+.|++++|...|+.+.+.. |+ ...+-.+..+|...|++++|...|+.+.+.-. ......+..+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 34455555555555554431 11 13344444555555555555555555543210 111223333444454555
Q ss_pred CchHHHHHHHHHhh
Q 035645 200 KHDLAEKIEQLEVS 213 (217)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (217)
+.+.|.++++...+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.014 Score=43.35 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
.+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+-.. +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345556667777888888877766663 46777888888999999999887765432 12347788888888
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 161 GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
...|+..+|..+...+ .+..-+..|.++|++.+|.+.....
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888888887651 2245667777788888777664433
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.011 Score=43.89 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
.+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. .-++..|-.++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 455666777788899888888765552 37999999999999999999987765432 22457899999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 126 FRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+..
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 9999999999888762 23566788889999999987765443
No 193
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0066 Score=49.87 Aligned_cols=193 Identities=15% Similarity=0.126 Sum_probs=108.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CC--------CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QG--------SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD 79 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (217)
+...|..+...|.+..+++-|.-.+..|.. +| -.|+ .+=.-..-...+.|-+++|..+|.+.++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 345688888888888877777766666643 11 1111 1112222233456677777777766654
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH----------hcC----
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK----------IKG---- 145 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~---- 145 (217)
|..|=..|...|+|++|.++-+.--... -..||..-..-+-..++.+.|++.|++.. ...
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 3344445666677777766544221111 12345555555555666666666665421 110
Q ss_pred -----CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------C----------CCCChhhHHHHHHHHHhcCC
Q 035645 146 -----HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM----------G----------LTPISRCFDLVTDGLKNCGK 200 (217)
Q Consensus 146 -----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~----------~~~~~~~~~~l~~~~~~~~~ 200 (217)
-..|...|.--.+.+-..|+.+.|+.++....+. | -.-|....-.|.+.|...|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 1124445555555555667777776666654421 1 02245566678888888999
Q ss_pred chHHHHHHHHHhhh
Q 035645 201 HDLAEKIEQLEVSL 214 (217)
Q Consensus 201 ~~~a~~~~~~~~~~ 214 (217)
+.+|..+|-++...
T Consensus 983 v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888776543
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.006 Score=43.34 Aligned_cols=155 Identities=17% Similarity=0.072 Sum_probs=96.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
..+......+...+.|++=. ...-+.++.++.-.+.+.-...++.+.++...+.++.....|.+.-.+.|+.+
T Consensus 157 ~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k 229 (366)
T KOG2796|consen 157 ANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK 229 (366)
T ss_pred HHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH
Confidence 33333333466666666543 22345566666667777788888888877665666777777777778888888
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHH-----HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPII-----KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANY 172 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 172 (217)
.|...|++..+..-..+..+.+.++ ..+.-.+++-.|...+.+....+- -|+...|.-.-++.-.|+..+|.+.
T Consensus 230 ~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 230 TAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHH
Confidence 8888888766554444444444433 334455667777777776665432 2344444444444456778888888
Q ss_pred HHHHHHcC
Q 035645 173 LMEMTEMG 180 (217)
Q Consensus 173 ~~~~~~~~ 180 (217)
++.+....
T Consensus 309 ~e~~~~~~ 316 (366)
T KOG2796|consen 309 LEAMVQQD 316 (366)
T ss_pred HHHHhccC
Confidence 88877654
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0091 Score=43.11 Aligned_cols=103 Identities=13% Similarity=0.007 Sum_probs=84.2
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCChhhH
Q 035645 112 NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR---GGRFVEAANYLMEMTEMGLTPISRCF 188 (217)
Q Consensus 112 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 188 (217)
+-|...|..|-.+|...|+.+.|..-|....+. ..++...+..+..++.. .....++..+|++....+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 567889999999999999999999999998775 23456666666665543 234578999999999865 4567788
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 189 DLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..|...+...|++.+|...|+.|.++-|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999988754
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.0013 Score=37.23 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=8.0
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 035645 121 IIKGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~ 141 (217)
....+.+.|++++|.+.+...
T Consensus 35 ~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 35 RARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 333333333333333333333
No 197
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.013 Score=48.29 Aligned_cols=187 Identities=12% Similarity=0.080 Sum_probs=130.4
Q ss_pred ChhhHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-C--------CC
Q 035645 9 PVRGRDLLVQ--GLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL-G--------SC 77 (217)
Q Consensus 9 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 77 (217)
|..|-..+++ .|..-|+.+.|.+-++-++ +...|..+.++|.+.++++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444444 3556789999988877664 5678999999999999999888777666432 1 11
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 035645 78 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157 (217)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 157 (217)
|+ .+=..+.-.....|.+++|..+|++-+.. ..|=+.|...|.|++|.++-+.=-. .--..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR---iHLr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR---IHLRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc---eehhhhHHHHH
Confidence 22 22233444456889999999999988753 3455677889999999998763211 11235777777
Q ss_pred HHHhcCCCHHHHHHHHHHHH----------HcC---------CCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 158 TMCGRGGRFVEAANYLMEMT----------EMG---------LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.-+-..++.+.|++.|++.. ... -..|...|..-.+.+...|+.+.|..++..+.+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 77778888888888887532 111 1236677888888888899999999998887654
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.019 Score=40.90 Aligned_cols=132 Identities=13% Similarity=0.049 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHH-----H
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTL-----I 157 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i 157 (217)
.+.++..+.-.+.+.-....+++..+.+.+.++.....+.+...+.|+.+.|...|+...+..-..|..+++.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 44555555555666666666666665544444555555556666666666666666655433222222222222 2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
..+.-++++-.|...+.++...+ ..|....+.=.-+..-.|+...|.+..+.+++..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 23344555556666665555433 1222222222223333455666666665555543
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.46 E-value=0.00075 Score=38.26 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=50.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhh
Q 035645 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC 187 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 187 (217)
-..|.+.+++++|.++++.+...+ +.+...+.....++...|++++|.+.|+...+.+ |+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHH
Confidence 356788999999999999998874 3367788888889999999999999999988764 54443
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.015 Score=38.41 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=63.9
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 131 (217)
..-+...|++++|..+|..+.-.++. +..-+..|..++-..+++++|...|......+ .-|+..+-..-.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33455678888888888887654332 45556677777777888888888888766544 23444455567778888888
Q ss_pred HHHHHHHHHHHhc
Q 035645 132 DDAFCFFSEIKIK 144 (217)
Q Consensus 132 ~~a~~~~~~~~~~ 144 (217)
+.|...|......
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888877763
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.38 E-value=0.00095 Score=38.41 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhc----CC-Ccc-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKL----GS-CAD-VSTYKILIPAVSKAGMIDEAFRLLHNL 106 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (217)
+++.+...|...|++++|+..|++..+. |- .|+ ..+++.+..++...|++++|.+.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555555544321 10 011 234555555555555555555555543
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.36 E-value=0.00082 Score=38.68 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC-CCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEM----GL-TPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.+++.+...|...|++++|.+.|++..+. |- .|+ ..++..+..++...|++++|.+.++...++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555666666666666666666655521 11 111 345666666666666666666666665543
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0091 Score=39.38 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
.-.....+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+. -|...+--...++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 344555667889999999999999876533 666778888889999999999999988765443 355566777889999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 035645 93 AGMIDEAFRLLHNLVED 109 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~ 109 (217)
.|+.+.|...|....+.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999988773
No 204
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.31 E-value=0.0034 Score=45.01 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=70.7
Q ss_pred CCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------chhHH
Q 035645 6 FNPPVRGRDLLVQGLLNA-----GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG----------------EVEFC 64 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a 64 (217)
-+.|..+|-..+..+... +.++-....++.|.+.|++-|..+|+.|++.+-+.. +-+=+
T Consensus 63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 345667777777777654 667778888888999999999999999998865432 12237
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
+.++++|...|+.||..+-..+++++.+.+..
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 88889999999999999999999999887654
No 205
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.26 E-value=0.0037 Score=44.82 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=60.2
Q ss_pred CcchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----------------ChHHHH
Q 035645 77 CADVSTYKILIPAVSKA-----GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG----------------QFDDAF 135 (217)
Q Consensus 77 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------------~~~~a~ 135 (217)
..|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+-. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45677777777777553 556777777788888888888888888888764332 123355
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 136 CFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
.++++|...|+.||-.+-..+++++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 6666666666666666666666666665543
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.22 E-value=0.013 Score=44.98 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV----STYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555666666666666666666665553 2332 23556666666666666666666655543
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.18 E-value=0.034 Score=37.62 Aligned_cols=134 Identities=17% Similarity=0.115 Sum_probs=87.6
Q ss_pred CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCcccHH
Q 035645 41 SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-PFPSLYA 119 (217)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 119 (217)
..|+...--.|..+..+.|+..+|...|++...--+-.|....-.+..+....+++-.|...++.+.+.+.. -++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 356666666777788888888888888887766545556677777777777788888888888877765411 1233445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
.+.+.+...|.+..|+.-|+..... -|+...-......+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 5667778888888888888877765 344333333334455666666555444443
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.17 E-value=0.048 Score=42.04 Aligned_cols=65 Identities=9% Similarity=0.059 Sum_probs=57.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDL----ETFNSLIETICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (217)
.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999886 4553 46999999999999999999999999874
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.16 E-value=0.07 Score=42.14 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=108.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhc-CCCcc-----hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccH
Q 035645 49 NSLIETICKSGEVEFCVEMYYSVCKL-GSCAD-----VSTYKILIPAVSK----AGMIDEAFRLLHNLVEDGHNPFPSLY 118 (217)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (217)
..+++..+-.|+-+.+++.+.+..+. ++... ..+|+..+..++. ....+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555566788999999998877543 22221 2345555544443 45678899999999876 5776655
Q ss_pred HHH-HHHHHhcCChHHHHHHHHHHHhcC---CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 035645 119 API-IKGAFRRGQFDDAFCFFSEIKIKG---HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194 (217)
Q Consensus 119 ~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (217)
... .+.+...|++++|.+.|+...... .+.....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|..+.-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 356778899999999999765321 11223444556666788999999999999999754 3455555544433
Q ss_pred -HHhcCCc-------hHHHHHHHHHhhh
Q 035645 195 -LKNCGKH-------DLAEKIEQLEVSL 214 (217)
Q Consensus 195 -~~~~~~~-------~~a~~~~~~~~~~ 214 (217)
+...|+. ++|.+++.....+
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4457777 7888888776654
No 210
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.15 E-value=0.057 Score=39.80 Aligned_cols=132 Identities=7% Similarity=0.082 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCCC---CCcccHHHHHHHHHhcCC-
Q 035645 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSK--AG----MIDEAFRLLHNLVEDGHN---PFPSLYAPIIKGAFRRGQ- 130 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~- 130 (217)
+++.+.+++.|.+.|+..+..+|-+....... .. ...+|..+|+.|++...- ++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677788999999998888777664444443 22 345788999999987432 333455555444 3333
Q ss_pred ---hHHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 035645 131 ---FDDAFCFFSEIKIKGHPPN--RPVYTTLITMCGRGGR--FVEAANYLMEMTEMGLTPISRCFDLVTDG 194 (217)
Q Consensus 131 ---~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (217)
.+.++.+|+.+.+.|+..+ ....+.++........ ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4567888888888777654 2344444444333333 34788888899999988877777655433
No 211
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.045 Score=38.62 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCchhHHHHHHHHHH----hcCCCcch
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDL------ETFNSLIETICKSGEVEFCVEMYYSVC----KLGSCADV 80 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 80 (217)
..|.....+|....++++|...+.+..+- .+-+. ..|...+...-+...+.++..++++.. +.| .|+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDT 109 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccch
Confidence 44667777888899999999988776531 12122 234444444555666777777777653 333 3444
Q ss_pred hhH--HHHHHHHHhcCCHHHHHHHHHHHHhC---CCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC
Q 035645 81 STY--KILIPAVSKAGMIDEAFRLLHNLVED---GHN--PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPN 149 (217)
Q Consensus 81 ~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~ 149 (217)
..- ..-. -..+..++++|+.+|++.... +-. --...+..+-+.+.+...+++|-..+.+-... .--++
T Consensus 110 AAmaleKAa-k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 110 AAMALEKAA-KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 321 1111 133456778888888775432 100 11223555666777777787776665543221 01122
Q ss_pred -HhHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 150 -RPVYTTLITMCGRGGRFVEAANYLMEMTEM---GLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 150 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
-..|-..|-.+....++..|.+.++.-.+. .-.-+..+...|+.+| ..|+.+++.++.
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 234666666777888999999999885432 2233566888889888 568899888876
No 212
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.15 E-value=0.082 Score=41.59 Aligned_cols=151 Identities=9% Similarity=0.063 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-chhhHHHHHHHHHhcCCHHHHHHHHH
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLH 104 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (217)
.+.....+++++..-..--..+|...|+...+..-...|..+|.+..+.+..+ ++.+.++++.-+| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55666777777653222234467888888888888999999999998877777 6677778887665 467889999998
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 105 NLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN--RPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 105 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
--++.- ..++.--...+..+...++-..+..+|+.....+++|+ ...|..+|.--+.-|+...+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 765542 22333345678888999999999999999998877666 47999999999999999999888877653
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.11 E-value=0.032 Score=36.14 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
...++..+.+.+.+.....+++.+...+. .+...++.++..|++.+ ....++.++. .++.......+..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34555566666666666666666665542 45556666666666543 2222233221 1223333445555555
Q ss_pred cCCHHHHHHHHHHH
Q 035645 93 AGMIDEAFRLLHNL 106 (217)
Q Consensus 93 ~~~~~~a~~~~~~~ 106 (217)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
No 214
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.03 E-value=0.022 Score=44.36 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=86.5
Q ss_pred HHHhcCCHHHHHHHHHHHh-hCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 19 GLLNAGYLESAKQMVNKMI-KQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 19 ~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
...-.|+++.+.++.+.-. -..+ .....+.++..+-+.|..+.|+++-..-. .-.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 4455688888777775211 1112 24557788888888888888887743321 2233455677777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
.|.++.++. .+...|..|.....+.|+++.|.+.|.+.. -|..|+-.|...|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 777664322 255677777777778888888877777543 24555566666777777666666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 178 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
..|- ++....++.-.|+.++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5552 2333444444455555555554
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.056 Score=36.61 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=97.7
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCHhH
Q 035645 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG---HPPNRPV 152 (217)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 152 (217)
.-|+..---.|..++.+.|+..+|...|++...--.-.|....-.+.++....+++..|...++.+-+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4577777778999999999999999999998865455677778888899999999999999999987652 3344 4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHH
Q 035645 153 YTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 206 (217)
Q Consensus 153 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (217)
.-.+...+...|++.+|...|+..... .|+...-..-...+.+.|+.+++..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 456678889999999999999988875 4555544444555667776665543
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.94 E-value=0.045 Score=42.69 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
...+.++..+.+.|..+.|+++.+.-. .-.....+.|+++.|.++-++. .+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 347888888888999999888754432 2355667788888888775433 3667899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
.+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.+++.
T Consensus 358 L~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 99999999999988654 256777888889998888888877776642 555566666778888888
Q ss_pred HHHHH
Q 035645 171 NYLME 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77753
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.89 E-value=0.053 Score=35.01 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGS--DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
+-.-.....+.|+++.|.+.|+.+..+-. +-...+--.++.+|.+.+++++|...+++.++........-|-..+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33344455577899999999998887521 2244556678888889999999999999888765433334455555555
Q ss_pred HhcC
Q 035645 91 SKAG 94 (217)
Q Consensus 91 ~~~~ 94 (217)
+...
T Consensus 93 ~~~~ 96 (142)
T PF13512_consen 93 SYYE 96 (142)
T ss_pred HHHH
Confidence 4433
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.83 E-value=0.097 Score=37.22 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQG--SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
.|+.-+. -.+.|++++|...|+.+.++. -+-...+--.++.++.+.+++++|+...++..+.........|-..|.+
T Consensus 37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3444433 346788888888888887642 1223445556667777888888888888877664332222334444444
Q ss_pred HH
Q 035645 90 VS 91 (217)
Q Consensus 90 ~~ 91 (217)
++
T Consensus 116 Ls 117 (254)
T COG4105 116 LS 117 (254)
T ss_pred HH
Confidence 43
No 219
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.82 E-value=0.12 Score=38.15 Aligned_cols=150 Identities=11% Similarity=0.126 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cC----chhHHHHHHHHHHhcCCC---cchhhHHHHHHHHHhcCCH
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICK--SG----EVEFCVEMYYSVCKLGSC---ADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 96 (217)
+++...+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|++.... ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55677889999999998888776654333333 22 345799999999876432 234455555443 44443
Q ss_pred ----HHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCHhHHHHHHHHH-hcCCC--
Q 035645 97 ----DEAFRLLHNLVEDGHNPFPS--LYAPIIKGAFRRGQ--FDDAFCFFSEIKIKGHPPNRPVYTTLITMC-GRGGR-- 165 (217)
Q Consensus 97 ----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~-- 165 (217)
+.+..+|+.+.+.|+..+.. ....++..+..... ...+.+++..+.+.|+++....|..+.-.. ...+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 56778888898877665432 33333333333333 347888999999999998887777664333 23333
Q ss_pred -HHHHHHHHHHHH
Q 035645 166 -FVEAANYLMEMT 177 (217)
Q Consensus 166 -~~~a~~~~~~~~ 177 (217)
.+...++.+.+.
T Consensus 236 ~~~~i~ev~~~L~ 248 (297)
T PF13170_consen 236 IVEEIKEVIDELK 248 (297)
T ss_pred HHHHHHHHHHHHh
Confidence 334444444444
No 220
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.18 Score=40.16 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhcC--chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCcc
Q 035645 47 TFNSLIETICKSG--EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLH--------NLVEDGHNPFPS 116 (217)
Q Consensus 47 ~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~ 116 (217)
.+.+++..+.+.. .+..+.+++...-+....-...+--..+......|+++.|.+++. .+.+.+.. +.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hh
Confidence 3444554443322 356666666666543222234556667777888899999998888 44444433 34
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 035645 117 LYAPIIKGAFRRGQFDDAFCFFSEIKIKG--HPPNR----PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDL 190 (217)
Q Consensus 117 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (217)
+...+...+.+.++-+.|..++.+..... ..+.. .++..+...-.+.|+.++|...++++.+.. ++|..+...
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~ 497 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHH
Confidence 55667777778888777777777765431 11222 233333334456789999999999988865 578888888
Q ss_pred HHHHHHhcCCchHHHHHHHHHh
Q 035645 191 VTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
++.+|++. +.+.|+.+-+.+.
T Consensus 498 lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 498 LVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHhc-CHHHHHHHhhcCC
Confidence 88888764 5666666655443
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.078 Score=39.32 Aligned_cols=151 Identities=9% Similarity=-0.046 Sum_probs=83.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc---CCCcchhhHHHHHHHHHhcCCHHHH
Q 035645 23 AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL---GSCADVSTYKILIPAVSKAGMIDEA 99 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 99 (217)
.|++.+|-..++++... .+.|...+...=.+|.-.|+.+.-...++++... +++-....-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 35555555666666554 4446666666666777777777777777666532 1111122223344445566777777
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 035645 100 FRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHP---PNRPVYTTLITMCGRGGRFVEAANYLME 175 (217)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 175 (217)
++.-++..+.+ +.|.-.-.+....+--.|++.++.++..+-...--. .-...|=...-.+...+.++.|.++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77777766655 445555556666666677777777666543322110 0112222233344555777777777754
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.80 E-value=0.15 Score=39.45 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh-HHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQG-SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST-YKILIPA 89 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~ 89 (217)
.|...|....+..-++.|..+|-+..+.| ..+++..+++++..++. |+...|..+|+-=... + ||... -+..+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHHHH
Confidence 45566666667777778888888887777 45666777777765554 6677777777643332 2 34333 3456667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPF--PSLYAPIIKGAFRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 143 (217)
+...++-+.|..+|+...++ +..+ ...|..+|..=+..|+...+..+=+.+..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77777777777777744332 0111 34677777777777777776666655544
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.77 E-value=0.18 Score=39.45 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=31.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHP-PNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
.+..++-+.|+.++|.+.++++.+.... .+......|+.++...+++.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444555566666666666666543111 123355556666666666666666665544
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.1 Score=38.72 Aligned_cols=152 Identities=11% Similarity=-0.047 Sum_probs=104.0
Q ss_pred cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCcccHHHHHHHHHhcCChHHH
Q 035645 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG---HNPFPSLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a 134 (217)
.|++.+|-..++++.+. .+.|...++..=.+|...|+.+.....++++.... ++-.+.+-....-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 46677777778888765 56677888888888999999988888888887652 211223333444556678999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE---MGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
++.-++..+-+ +.|.-.-.++...+--.|++.++.++..+-.. .+.-.-...|-...-.+...+.++.|+++|+..
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99888876653 23555556666677778899998888765432 222222234555566667778999999988654
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.70 E-value=0.078 Score=34.29 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
....++..+.+.+.......+++.+...+. .+....+.++..|++.+ .++..+.+.. ..+......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 345677778888899999999999987763 67788999999999875 3444455442 123455666889999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 035645 127 RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG-GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN 197 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (217)
+.+.++++..++..+.. +...+..+... ++++.|.+++.+ ..+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 99999999999987642 22233333334 888889888865 2355677777776654
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.69 E-value=0.11 Score=35.88 Aligned_cols=205 Identities=17% Similarity=0.114 Sum_probs=132.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
...+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 355666777777888888888888777652 234455666677777777788888888888887643332 122222223
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCC
Q 035645 89 -AVSKAGMIDEAFRLLHNLVEDGH--NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR 165 (217)
Q Consensus 89 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 165 (217)
.+...++++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 67888888888888888755221 012223333444456778888888888888765221135677777777888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 166 FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++.+...+......... ....+..+...+...+..+.+...++......+
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 88888888877764321 233444455555566678888877777665543
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.081 Score=40.00 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=84.8
Q ss_pred HHHHhcCchhHHHHHHHHHHhc-----CCC---------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH
Q 035645 53 ETICKSGEVEFCVEMYYSVCKL-----GSC---------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY 118 (217)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (217)
+.|.+.|++..|..-|++..+. +.. .-...++.+.-++.+.+++..|+..-++.+..+ +++....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4567778888888887775431 111 123467778888899999999999999888876 5667776
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH-HHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 035645 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV-YTTLITMCGRGGRF-VEAANYLMEMTE 178 (217)
Q Consensus 119 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~-~~a~~~~~~~~~ 178 (217)
----.++...|+++.|+..|..+++. .|+-.. -+.++...-+..+. +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66778888999999999999999876 454444 44444443333333 344677777763
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.064 Score=40.53 Aligned_cols=124 Identities=17% Similarity=0.107 Sum_probs=92.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC-----CCCC---------ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQ-----GSDP---------DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST 82 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~-----~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (217)
...+.+.|++..|..-|++..+. +..+ -...++.+..++.+.+++..|++.-+...... ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34678899999999998886542 1111 23457788899999999999999999998764 457888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChH-HHHHHHHHHHh
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS-LYAPIIKGAFRRGQFD-DAFCFFSEIKI 143 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~-~a~~~~~~~~~ 143 (217)
.-.-..++...|+++.|...|+++.+.. |+.. +-+.++..-.+..... ...++|..|-.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888899999999999999999999874 4444 4445555444444443 34677877754
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.64 E-value=0.08 Score=33.69 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=49.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC------------------cchh
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC------------------ADVS 81 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~ 81 (217)
..-.|.+++..+++.+...+. +..-+|-++--....-+-+-..++++.+-+. +. .+..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDis~C~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDISKCGNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-GGG-S-THHHHHHHHHTT---H
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh-cCchhhcchHHHHHHHHHhcchHH
Confidence 345688888888888877542 3333333332222223333334444433221 10 1222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
.....++.+...|+-+...++++.+.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33334444444444444444444444322 3334444444444444444444444444444444
No 230
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.58 E-value=0.052 Score=39.37 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHhHHHHH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI-----KGHPPNRPVYTTL 156 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 156 (217)
++..++..+...++.+.+.+.++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555556666666666666666666654 44566666666666666666666666666544 3566666555555
Q ss_pred HHH
Q 035645 157 ITM 159 (217)
Q Consensus 157 i~~ 159 (217)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 231
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=96.53 E-value=0.19 Score=36.55 Aligned_cols=138 Identities=9% Similarity=0.099 Sum_probs=94.3
Q ss_pred chhHHHHHHHHHHh-cCCCcchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChHHHH
Q 035645 60 EVEFCVEMYYSVCK-LGSCADVSTYKILIPAVSKAG--MIDEAFRLLHNLVED-GHNPFPSLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 60 ~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~ 135 (217)
...+|+++|+.... ..+-.|..+...+++...... ....-.++.+-+... +-.++..+...++..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34567777764322 234457777777777776622 233333444444432 34677788889999999999999999
Q ss_pred HHHHHHHhc-CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCCChhhHHHHHHHHHh
Q 035645 136 CFFSEIKIK-GHPPNRPVYTTLITMCGRGGRFVEAANYLMEM-----TEMGLTPISRCFDLVTDGLKN 197 (217)
Q Consensus 136 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 197 (217)
++|...... +..-|...|..+|......|+..-..++.++= .+.++..+...-..+-..|.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999987655 56668899999999999999988777777652 255666666666665555543
No 232
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.021 Score=41.69 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=77.5
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCC--hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc
Q 035645 4 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG---SDPD--LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA 78 (217)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (217)
.|.+.+..+...++..-....+++.+...+-+++.+. ..|+ .++|-.++. .-+.++++.+...-++.|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 4667777788888888888888999999888887541 1222 223322322 236778888888888999999
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 035645 79 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 110 (217)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (217)
|..+++.+++.+.+.+++.+|..+.-.|...+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887776553
No 233
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.1 Score=39.66 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=91.3
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH---HH---------
Q 035645 54 TICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA---PI--------- 121 (217)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--------- 121 (217)
++.-.|+.++|.+.-....+..- .+....-.--.++...++.+.+...|++.+..+ |+...-. ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 45566777777777666655321 122222222223445677788888888776653 3332211 11
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhc---CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 035645 122 -IKGAFRRGQFDDAFCFFSEIKIK---GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI-SRCFDLVTDGLK 196 (217)
Q Consensus 122 -l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 196 (217)
-.-..+.|++..|.+.|.+.+.. ...|+...|-....+..+.|+.++|+.--++..+.+ |. ...|..-..++.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHH
Confidence 12246778888888888887653 345566677777777778888888887776655432 11 122333344555
Q ss_pred hcCCchHHHHHHHHHhhh
Q 035645 197 NCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~ 214 (217)
..++|++|.+-++...++
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667777777777666554
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.51 E-value=0.061 Score=39.01 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCcccHH
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-----DGHNPFPSLYA 119 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 119 (217)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455566666666777777777777766542 23556677777777777777777777666554 36666666555
Q ss_pred HHHHH
Q 035645 120 PIIKG 124 (217)
Q Consensus 120 ~ll~~ 124 (217)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.36 Score=39.21 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh-----------h
Q 035645 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR-----------C 187 (217)
Q Consensus 119 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~ 187 (217)
-.+...+.+...+.-|-++|.+|-. ...+++.....++|++|+.+-+...+. .||.. -
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhh
Confidence 3333344445555556666665532 235667778889999999888765542 33332 3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 188 FDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
|...-++|.++|+..+|.++++.+.
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhh
Confidence 4455667788888888888876654
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.1 Score=37.45 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=42.3
Q ss_pred hcCChHHHHHHHHHHHhcCCC--CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCCch
Q 035645 127 RRGQFDDAFCFFSEIKIKGHP--PNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG-LTP-ISRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 202 (217)
+.|++..|..-|....+.... -....+--|..++...|++++|..+|..+.+.- -.| -+.++-.|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555544211 112233345555555555555555555554321 111 1234455555555555555
Q ss_pred HHHHHHHHHhhh
Q 035645 203 LAEKIEQLEVSL 214 (217)
Q Consensus 203 ~a~~~~~~~~~~ 214 (217)
+|...++...+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.2 Score=35.94 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC-Cc-chhhHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGS--DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS-CA-DVSTYKILI 87 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ll 87 (217)
.|+..+..+ +.|++..|...|...++... .-....+--|..++...|++++|..+|..+.+.-. .| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555444 44556666666666665421 11233344566666666666666666666654311 11 124455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 035645 88 PAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666666666666666666554
No 238
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.37 E-value=0.024 Score=43.02 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CCCCCh
Q 035645 116 SLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GH-PPNRPVYTTLITMCGRGGRFVEAANYLMEMTE----M-GLTPIS 185 (217)
Q Consensus 116 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~ 185 (217)
.++..+-.++.-.|+++.|.+.|+..... |- ......+-.|...|.-..++++|+.++.+-.. . ...-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34566666677777777777777654322 21 11234455566666666777888877765432 1 112244
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 186 RCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
..+.+|..+|...|..++|..+.+...+
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5788888888888999988888766554
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.34 E-value=0.35 Score=37.56 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDG-HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITM 159 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 159 (217)
.+|-..++...+..-.+.|..+|-+..+.+ +.++...+++++..++ .|+...|..+|+.=... ++.+..--+-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 345566666667777888999999999888 5577888888888766 67788889998865443 23334444566777
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 160 CGRGGRFVEAANYLMEMTEMGLTPI--SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
+...++-+.|..+|+....+ +.-+ ..+|..+|..=..-|+...+..+-+++..+-
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 88889999999999865532 1122 4578888888888899888887777766543
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.34 E-value=0.39 Score=38.09 Aligned_cols=162 Identities=13% Similarity=0.078 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-----hhhHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCcchhh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQ-GSDPD-----LETFNSLIETICK----SGEVEFCVEMYYSVCKLGSCADVST 82 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (217)
+..++...+=.|+-+.+++.+.+..+. ++.-. .-+|...+..+.. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555566678888999888887653 22211 1223333333332 45678899999999874 466655
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 83 YK-ILIPAVSKAGMIDEAFRLLHNLVEDG---HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 83 ~~-~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
|. .-.+.+...|++++|.+.|+...... .......+--+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 54 34455667899999999999765421 11233445566777888999999999999998752 223444444433
Q ss_pred H-HhcCCCH-------HHHHHHHHHHH
Q 035645 159 M-CGRGGRF-------VEAANYLMEMT 177 (217)
Q Consensus 159 ~-~~~~g~~-------~~a~~~~~~~~ 177 (217)
+ +...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3466777 88888888875
No 241
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.13 Score=37.89 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
++++++.++..=++.|+-||..+++.+++.+.+.+++.+|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554444
No 242
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.32 Score=37.19 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=102.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhH-------------HH
Q 035645 19 GLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTY-------------KI 85 (217)
Q Consensus 19 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~ 85 (217)
++.-.|+.+.|.++--..++... .+....-.--.++.-.++.+.++..|++..+.+ |+...- ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 34456788888777666655431 133333233334555677888888888876643 443221 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh---HHHHHHHH
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVED---GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP---VYTTLITM 159 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~ 159 (217)
-.+-..+.|.+.+|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--+...+. |.. .+..-..+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c 330 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANC 330 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHH
Confidence 222345678888898888887754 34455666777778888889999888887776643 322 22222344
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 035645 160 CGRGGRFVEAANYLMEMTEMGLTP-ISRCFDLVTDGLKN 197 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 197 (217)
+...++|++|.+-++...+..-.+ +..+......++.+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 455678888888887766543222 23344444444443
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.29 Score=38.36 Aligned_cols=141 Identities=15% Similarity=0.200 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC------------------
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS------------------ 76 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------ 76 (217)
.+|.-.-+..+...-.+.-++..+. .|+..+.-+++ +--......++.++|++..+.|-
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 4555566777777777777777663 34443322222 11123446677777766543320
Q ss_pred --Ccc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 035645 77 --CAD----VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 77 --~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 149 (217)
..+ ..+-..+..++-+.|+.++|.+.+++|.+..-. ....+...|+.++...+.+.++..++.+..+...+.+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 011 222344666777889999999999999865322 2344778899999999999999999998754333222
Q ss_pred -HhHHHHHHH
Q 035645 150 -RPVYTTLIT 158 (217)
Q Consensus 150 -~~~~~~li~ 158 (217)
...|+..+-
T Consensus 330 Ati~YTaALL 339 (539)
T PF04184_consen 330 ATICYTAALL 339 (539)
T ss_pred HHHHHHHHHH
Confidence 356665543
No 244
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.07 E-value=0.28 Score=34.03 Aligned_cols=153 Identities=15% Similarity=0.033 Sum_probs=83.3
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKLGSC--ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (217)
.....+.+.|++++|++.|+.+...... --....-.++.++.+.|+++.|...++++.+.........+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3445567889999999999999865221 12345667888899999999999999998876322222233333343332
Q ss_pred cCChHHHHHHHHHHHhcCCCC-----CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCch
Q 035645 128 RGQFDDAFCFFSEIKIKGHPP-----NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (217)
........ .....+ -...+..++.-|-.+....+|...+..+.+. .-.. --.+..-|.+.|.+.
T Consensus 90 ~~~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 90 YKQIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HH
T ss_pred HHhCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHH
Confidence 22211110 000000 1235556666666666667776666555431 0011 123555666777777
Q ss_pred HHHHHHHHHhh
Q 035645 203 LAEKIEQLEVS 213 (217)
Q Consensus 203 ~a~~~~~~~~~ 213 (217)
.|..-++.+.+
T Consensus 159 aA~~r~~~v~~ 169 (203)
T PF13525_consen 159 AAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.05 E-value=0.015 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 188 FDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
+..+..+|.+.|++++|+++++...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4445555555555555555555554443
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.94 E-value=0.045 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQ 39 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 39 (217)
+|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.90 E-value=0.23 Score=31.61 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=65.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCH---hHHHHHHHHHhcC
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-GHPPNR---PVYTTLITMCGRG 163 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~~li~~~~~~ 163 (217)
-++...|+.+.|++.|.+....- +-...+||.-..++--.|+.++|++=+++..+. |-. .. ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 35677888888888888877653 345678888888888888888888888887664 322 22 2233333455667
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 035645 164 GRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 164 g~~~~a~~~~~~~~~~~~ 181 (217)
|+.+.|..=|...-+.|-
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888887777764
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.86 E-value=0.25 Score=31.56 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 111 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 111 (217)
+.......+......|+-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3455667777888888888888888888653 457888888999999999999999999999998885
No 249
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.84 E-value=0.43 Score=34.22 Aligned_cols=82 Identities=10% Similarity=-0.031 Sum_probs=54.1
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST---YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (217)
+...+-.....+.+.|++++|++.|+.+...-.. +... .-.+..++.+.+++++|...+++..+.........|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333334455567789999999999999875322 2222 24566778899999999999999988743333334544
Q ss_pred HHHHHH
Q 035645 121 IIKGAF 126 (217)
Q Consensus 121 ll~~~~ 126 (217)
.+.+.+
T Consensus 110 Y~~g~~ 115 (243)
T PRK10866 110 YMRGLT 115 (243)
T ss_pred HHHHHh
Confidence 555543
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.77 E-value=0.38 Score=33.08 Aligned_cols=193 Identities=15% Similarity=0.098 Sum_probs=138.8
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-CCCcchhhHHHHHHHHHhcCCHHHHH
Q 035645 23 AGYLESAKQMVNKMIKQGSD-PDLETFNSLIETICKSGEVEFCVEMYYSVCKL-GSCADVSTYKILIPAVSKAGMIDEAF 100 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (217)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666654322 13567778888889999999999998888652 23445667778888888889999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHH-HHHhcCChHHHHHHHHHHHhcCC--CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 101 RLLHNLVEDGHNPFPSLYAPIIK-GAFRRGQFDDAFCFFSEIKIKGH--PPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988764333 222333333 78899999999999999855321 1233444445555677899999999999988
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 178 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..........+..+...+...++++.|...+.......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 754221467788889999999999999999888776543
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.46 Score=33.84 Aligned_cols=117 Identities=10% Similarity=0.036 Sum_probs=69.9
Q ss_pred hcCchhHHHHHHHHHHhc---C--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCc-ccHHHHHHHHH
Q 035645 57 KSGEVEFCVEMYYSVCKL---G--SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE----DGHNPFP-SLYAPIIKGAF 126 (217)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~-~~~~~ll~~~~ 126 (217)
+..++++|+++|++.... + ..--...+..+-..+.+...+++|-..+.+-.. ..-.++. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 345566677777665321 1 011124455666667777777776655543321 1111221 23556666677
Q ss_pred hcCChHHHHHHHHHHHhcC---CCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 035645 127 RRGQFDDAFCFFSEIKIKG---HPPNRPVYTTLITMCGRGGRFVEAANYLM 174 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 174 (217)
-..++..|..+++.--+.+ -+.+..+...|+.+| ..|+.+++.+++.
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 7789999999999854432 123567888888887 6688888777653
No 252
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.74 E-value=0.64 Score=35.47 Aligned_cols=157 Identities=14% Similarity=0.041 Sum_probs=75.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHhcCCHHHHH
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD-VSTYKILIPAVSKAGMIDEAF 100 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~ 100 (217)
-.|+.+.|.+-|+.|.... +....-...|.-..-+.|..+.|.+.-++.-.. -|. .-.....+...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHH
Confidence 3466666666666665420 001111222333334556666666665555432 222 244566777777778888887
Q ss_pred HHHHHHHhCC-CCCCcc--cHHHHHHHH--Hh-cCChHHHHHHHHHHHhcCCCCCHhH-HHHHHHHHhcCCCHHHHHHHH
Q 035645 101 RLLHNLVEDG-HNPFPS--LYAPIIKGA--FR-RGQFDDAFCFFSEIKIKGHPPNRPV-YTTLITMCGRGGRFVEAANYL 173 (217)
Q Consensus 101 ~~~~~~~~~~-~~~~~~--~~~~ll~~~--~~-~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~ 173 (217)
++++.-+... +.++.. .-..|+.+- .. .-+...|.+.-.+..+ +.||..- -..-..++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 7777654432 122221 111222111 11 1123333333333322 2444322 222345667777777777777
Q ss_pred HHHHHcCCCC
Q 035645 174 MEMTEMGLTP 183 (217)
Q Consensus 174 ~~~~~~~~~~ 183 (217)
+.+-+....|
T Consensus 287 E~aWK~ePHP 296 (531)
T COG3898 287 ETAWKAEPHP 296 (531)
T ss_pred HHHHhcCCCh
Confidence 7776655444
No 253
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.73 E-value=0.011 Score=38.37 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=38.3
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 131 (217)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444445555555555555554433344555555555555555555555444410 112223344555555555
Q ss_pred HHHHHHHHH
Q 035645 132 DDAFCFFSE 140 (217)
Q Consensus 132 ~~a~~~~~~ 140 (217)
+++.-++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.72 E-value=0.28 Score=31.26 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=68.6
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCC
Q 035645 54 TICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS---LYAPIIKGAFRRGQ 130 (217)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~ 130 (217)
+.+..|+.+.|++.|.+.... .+-....||.-..++--.|+.++|.+=+++..+..-.-+.. .|..--..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 567889999999999988764 23367889999999999999999999998887653222222 23333345677889
Q ss_pred hHHHHHHHHHHHhcCC
Q 035645 131 FDDAFCFFSEIKIKGH 146 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~ 146 (217)
-+.|..=|....+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998888777663
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.72 E-value=0.63 Score=38.27 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=31.8
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
++.+....-.+.+++.+.|.-++|.+.+-+ .+. | ...+..|...++|.+|.++.+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666677777777777777666532 221 1 2344556666666666665543
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.42 Score=39.82 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
+-...++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+-+.+-.++|..+-....
T Consensus 415 nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 333333444444332 33334455555555555555544444332 1111 1123334455555555555554444332
Q ss_pred hcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 143 IKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 143 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
. +......++. ..|++++|.+.+..+
T Consensus 491 ~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred c-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 1 2233333333 356677777766554
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.67 E-value=0.4 Score=32.55 Aligned_cols=112 Identities=10% Similarity=0.077 Sum_probs=67.8
Q ss_pred HHHHHHhhCCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 31 QMVNKMIKQGSDPD-LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 31 ~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
.-++...+..++-+ ...+..+...|.+.|+.+.|++.|.++.+....+. ...+-.++......+++..+.....+..
T Consensus 21 ~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 21 AELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444433333 34677888888888888888888888876544433 3556778888888888888887777665
Q ss_pred hCCCCC-CcccHH--HHHH--HHHhcCChHHHHHHHHHHH
Q 035645 108 EDGHNP-FPSLYA--PIIK--GAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 108 ~~~~~~-~~~~~~--~ll~--~~~~~g~~~~a~~~~~~~~ 142 (217)
..-..+ |...-+ .... .+...+++..|-..|-+..
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 431111 111111 1111 2234678888888777664
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.57 Score=34.23 Aligned_cols=150 Identities=10% Similarity=0.036 Sum_probs=91.3
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 035645 53 ETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132 (217)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 132 (217)
......|++.+|...|+....... -+...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667888888888887765422 2355566777788888888888888887654422222222223345555555555
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCchHHH
Q 035645 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL-TPISRCFDLVTDGLKNCGKHDLAE 205 (217)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 205 (217)
+...+-...-.. +-|...--.+...+...|+.+.|.+.+-.+.+.+. .-|...-..+++.|.--|.-+.+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 555555544433 22566666777778888888888777766654322 234455667777777666554433
No 259
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=95.65 E-value=0.25 Score=32.08 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred HHHHHhhCCCCCChh--hHHHHHHHHHhcCchhHHHHHHHHHHhcC-----CCcchhhHHHHHHHHHhcCC-HHHHHHHH
Q 035645 32 MVNKMIKQGSDPDLE--TFNSLIETICKSGEVEFCVEMYYSVCKLG-----SCADVSTYKILIPAVSKAGM-IDEAFRLL 103 (217)
Q Consensus 32 ~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~ 103 (217)
....|.+.+..++.. ..+.++.-....+.+...+.+++.+.... -..+...|++++.+.++..- ---+..+|
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 344455555555543 35667777777788888777777764211 12356789999999876665 34567788
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCChHH
Q 035645 104 HNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133 (217)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 133 (217)
+.+.+.+..+++.-|..++.++.+-...+.
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 888887788888889999988877644443
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.59 E-value=0.04 Score=26.27 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCchhHHHHHHHH
Q 035645 48 FNSLIETICKSGEVEFCVEMYYS 70 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~ 70 (217)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555544
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.58 E-value=0.029 Score=26.79 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 188 FDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
+..|...|.+.|++++|.++++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666533
No 262
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.57 E-value=0.18 Score=30.06 Aligned_cols=62 Identities=8% Similarity=0.131 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
+.=++.+-++.+....+.|++....+.+++|.+.+++..|+++++-.+.. ...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 44456677777777788888888888888888888888888888877632 112344555544
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.54 E-value=0.42 Score=31.98 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCchhH
Q 035645 31 QMVNKMIKQGSDPDLETFNSLIETICKSGEVEF 63 (217)
Q Consensus 31 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 63 (217)
+.++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444445555555555555555555555443
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.53 E-value=0.45 Score=32.27 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCH----h
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF--PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK---GHPPNR----P 151 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~----~ 151 (217)
..+..+...|.+.|+.++|.+.|.++.+....+. ...+-.+|+.....+++..+.....+.... |-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5688899999999999999999999988754443 345678889999999999999988877543 221221 2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
.|..+ .+...+++..|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 2345789999988887665
No 265
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.49 E-value=0.44 Score=31.88 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 66 EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
+..+.+.+.+++|+...+..+++.+.+.|++. .+.++...++-+|.......+-.+.. ....+.++--+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 44555566677777777777777777777654 34444555555665554444333222 222333333333322
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
+ ...+..++..+...|++-+|.++.+..... +......++++-.+.++...-..+++..
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 013455666666777777777777654321 1112244556655666555555554443
No 266
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.47 E-value=0.044 Score=25.55 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 187 CFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+|..+..+|...|++++|.+.+++..+++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 456666666777777777777776666654
No 267
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.4 Score=39.44 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=85.6
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 035645 78 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157 (217)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 157 (217)
...-+.+--+.-+...|+..+|.++-.+++ -||-..|-.-+.+++..++|++-+++-+..+ ++.-|.-++
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344455666677778899999988877764 5788889889999999999998777666443 245677888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
.+|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.++.-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999998865332 1156778888888888887653
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.17 E-value=0.5 Score=30.62 Aligned_cols=80 Identities=15% Similarity=0.011 Sum_probs=51.8
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCA---DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
.....+.|++++|.+.|+.+... .+. ...+--.++.+|.+.+++++|...++++.+.+.......|...+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33445678888888888888654 222 23455567777888888888888888887775333345566666666554
Q ss_pred CChH
Q 035645 129 GQFD 132 (217)
Q Consensus 129 g~~~ 132 (217)
...+
T Consensus 96 ~~~~ 99 (142)
T PF13512_consen 96 EQDE 99 (142)
T ss_pred HHhh
Confidence 4433
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.15 E-value=0.063 Score=24.86 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 187 CFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+..+..++...|++++|.+.++...++.|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455566666677777777777776666554
No 270
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.06 E-value=0.37 Score=28.83 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDG 194 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (217)
+.-++.+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.+. ..+...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 444566667777777788888888999999999999999999988776332 2244566666654
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.97 E-value=0.64 Score=30.79 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=33.8
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCcchhh-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 53 ETICKSGEVEFCVEMYYSVCKLGSCADVST-YKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
..-.+.++.+++..+++.+.- ..|.... -..-...+...|+|.+|..+|+++.+.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334456777788888777755 2343322 222333466778888888888887654
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=2 Score=36.18 Aligned_cols=177 Identities=12% Similarity=0.090 Sum_probs=114.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH----HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSL----IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
....-+..+.+...++.|..+-+.- + .+..+...+ .+-+.+.|++++|...|-+-+.. +.|+ .++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3455667777777788887775442 2 234444444 44456789999999998777543 3332 345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
.-|....++.+-..+++.+.+.|+. +..--+.|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5666777788888889999998854 44555789999999999999888877544 2221 112445666677777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
+|..+-.+... +......++ -..+++++|.++++.+
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77766554332 223333333 3457788888877654
No 273
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.86 E-value=0.47 Score=28.70 Aligned_cols=60 Identities=7% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 28 SAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 28 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+..+-++.+....+.|++......+.+|.+.+++..|+++++-++.. ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 46667777777788888888888888888888888888888887643 2222225655543
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.79 E-value=0.96 Score=37.29 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=47.6
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------
Q 035645 112 NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL---------- 181 (217)
Q Consensus 112 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------- 181 (217)
+-+....-.+..++.+.|.-++|.+.|-+.. . | ...+..|...++|.+|.++-+...-..+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3344555566677777777777766665322 1 1 1334555666667666666554321100
Q ss_pred -CCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 182 -TPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 182 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
-.+.. ..--|..+.++|.+=.|-+++..|.+
T Consensus 920 ll~~~~-~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 920 LLADAN-HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 00111 11234556667766666666655543
No 275
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.66 E-value=1.2 Score=32.55 Aligned_cols=156 Identities=10% Similarity=0.081 Sum_probs=99.6
Q ss_pred CCCCCChhhHHHHHHHHHhc----C------------CHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHh-cCc-hhHH
Q 035645 4 KGFNPPVRGRDLLVQGLLNA----G------------YLESAKQMVNKMIK-QGSDPDLETFNSLIETICK-SGE-VEFC 64 (217)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~----g------------~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~~-~~~a 64 (217)
.|.+++..-+..+++.+... + .+.+|+.+|+..-- ..+--|..+...+++.... .+. ...-
T Consensus 106 ~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~al 185 (292)
T PF13929_consen 106 MGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNAL 185 (292)
T ss_pred cCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhH
Confidence 46666666666666653322 2 23334444442211 2244577788888888776 222 2222
Q ss_pred HHHHHHHH-hcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChHHHHHHHHH--
Q 035645 65 VEMYYSVC-KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSE-- 140 (217)
Q Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-- 140 (217)
.++.+-+. ..+..++..+...++..+++.++|.+-.++++..... +..-|...|..+|+.....|+..-...+..+
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh 265 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH 265 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC
Confidence 23333332 3345678888999999999999999999999987765 5567889999999999999998877776654
Q ss_pred ---HHhcCCCCCHhHHHHHHHH
Q 035645 141 ---IKIKGHPPNRPVYTTLITM 159 (217)
Q Consensus 141 ---~~~~~~~~~~~~~~~li~~ 159 (217)
+++.++..+...-..+-..
T Consensus 266 LLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 266 LLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred eEEeeecCCcCCHHHHHHHHHH
Confidence 2334555555554444333
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.66 E-value=0.19 Score=30.30 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=45.3
Q ss_pred HHHHhcCChH--HHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 035645 123 KGAFRRGQFD--DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195 (217)
Q Consensus 123 ~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (217)
..+....+.| +..+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+-++.+. .+....|..+++-+
T Consensus 16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHHH
T ss_pred HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 3444444333 566666666677788999999999999999999999999998877432 23333777776543
No 277
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=0.79 Score=37.80 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=87.7
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 43 PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
-..-+.+--+.-+..-|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+..+ ++.-|.-+.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344455666667788899999988876664 3799999999999999999998766654432 256688899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLME 175 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 175 (217)
.+|.+.|+.++|...+...... .-...+|.+.|++.+|.++--+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999988754321 1567888899999888877654
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.51 E-value=0.013 Score=38.03 Aligned_cols=129 Identities=12% Similarity=0.206 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcC
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (217)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 46777788899999999999999877667788999999999999888888888762 12233456778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCC
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR 165 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 165 (217)
.++++.-++.++....- .+..+...++++.|.+...+ .++...|..+++.+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 88888887776533211 01113344555555533332 2356777777777766554
No 279
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.48 E-value=2 Score=34.21 Aligned_cols=180 Identities=10% Similarity=0.031 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
|-....+++..++.+..+.-+..+..+|..-| -+...+..++.+|.+. ..++-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44556788889999999999999999998865 3677888999999888 678888999998886443 4444445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C---cccHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHhHHHHHHHHHhc
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNP--F---PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-GHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 162 (217)
.|-+ ++.+.+..+|.+...+-++- + ...|..+...- -.+.|....+..++... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5554 88888888888877553221 1 12344443321 34566666776666543 444455677777788889
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 035645 163 GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLK 196 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (217)
..++.+|.+++..+.+.+ .-|..+-..++.-+.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 999999999999888655 445555555555544
No 280
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=1.6 Score=32.08 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=94.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHH
Q 035645 19 GLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE 98 (217)
Q Consensus 19 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (217)
.....|++..|..+|......... +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 456778999999999988876433 4666778888999999999999999888653222222223344555666665555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhHHHHHHHHHhcCC
Q 035645 99 AFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--GHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 164 (217)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+. |.. |...-..++..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 55555555432 235566667788888999999998887776554 332 4455556666555545
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.19 E-value=0.17 Score=23.44 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=8.4
Q ss_pred HHHHHHHhcCchhHHHHHHHHH
Q 035645 50 SLIETICKSGEVEFCVEMYYSV 71 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~ 71 (217)
.+..+|...|++++|+..|++.
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHH
Confidence 3333334444444444444333
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.17 E-value=0.13 Score=23.77 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 187 CFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+|..+...|...|++++|.+.++...+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666665543
No 283
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.00 E-value=1.2 Score=30.80 Aligned_cols=75 Identities=9% Similarity=0.062 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhcCChHHHH
Q 035645 60 EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED---GHNPFPSLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~ 135 (217)
.-+.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34678888888877665545555555555555 66789999998887754 33577889999999999999999875
No 284
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.00 E-value=2.1 Score=32.75 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=109.3
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC---CCcchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCccc
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLG---SCADVSTYKILIPAVSK---AGMIDEAFRLLHNLVEDGHNPFPSL 117 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (217)
+..+...++-+|....+++..+++.+.+.... +.-+..+-....-++.+ .|+.++|.+++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444566667999999999999999997641 11123333455566777 8999999999999666656788889
Q ss_pred HHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCHh---HHHHHHHHHhcCCC-HHHHHHHH---HHHH-HcC
Q 035645 118 YAPIIKGAFR---------RGQFDDAFCFFSEIKIKGHPPNRP---VYTTLITMCGRGGR-FVEAANYL---MEMT-EMG 180 (217)
Q Consensus 118 ~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~-~~~a~~~~---~~~~-~~~ 180 (217)
|..+.+.|.. ....++|...|.+.-+. .||.. -+.+|+........ -.+..++- ..+. +.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9888877632 12367788777765433 34432 22233333222111 11222222 2222 333
Q ss_pred C---CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 181 L---TPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 181 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
. ..+-..+..++.++.-.|+.+.|.+..+.+..+.|
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 2 34555778899999999999999999999887754
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.89 E-value=0.19 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKM 36 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m 36 (217)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555444
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.80 E-value=1.1 Score=30.93 Aligned_cols=79 Identities=11% Similarity=-0.032 Sum_probs=57.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCCc
Q 035645 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE---MGLTPISRCFDLVTDGLKNCGKH 201 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 201 (217)
..+.| -+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+ .+-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34444 4567777877877765556666666665555 6788899998888774 33367888999999999999999
Q ss_pred hHHH
Q 035645 202 DLAE 205 (217)
Q Consensus 202 ~~a~ 205 (217)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.73 E-value=2.3 Score=32.13 Aligned_cols=192 Identities=11% Similarity=0.092 Sum_probs=99.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC---C-cchhhHHHHHHHHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS---C-ADVSTYKILIPAVS 91 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~ll~~~~ 91 (217)
...+..+.|+|+...+........ .++...+..+... ..++++++....+.....-. . .....|......+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778889999866665554432 2344455555443 77888888888777643211 0 11223333333333
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-----cCChHHHHHH---HHHHHh--cCCCCCHhHHHHHHHHHh
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR-----RGQFDDAFCF---FSEIKI--KGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~---~~~~~~--~~~~~~~~~~~~li~~~~ 161 (217)
+...+.+..++.+-...... +......++..... .++++.-..+ =..+.. ........+|..+.+.+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~~--~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQ--NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 33333333333332211100 01111111111110 1122111111 111111 112234567888888899
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 162 RGGRFVEAANYLMEMTEMGLTP---ISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
+.|+++.|...+..+...+..+ ++...-.-++.+...|+.++|.+.++....
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999998887644222 334445556667778888888888766554
No 288
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.73 E-value=3.3 Score=34.06 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=12.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQ 31 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~ 31 (217)
|....+.+-+..|...|.+++|.+
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ 577 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQ 577 (1081)
T ss_pred cccccccccchhhhhccchhhhhc
Confidence 334444455555566666666544
No 289
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.50 E-value=0.21 Score=38.25 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHh----cCC-Ccchhh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMI----KQGSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCK----LGS-CADVST 82 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~----~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~ 82 (217)
|..|...|.-.|+|+.|+...+.-. +-|-.. -...+..+.+++.-.|+++.|.+.|+.-.. .|- ......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444445555688999887766432 223222 345788899999999999999999886642 221 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVED-----GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
+.+|.+.|.-..++++|+.++.+-+.. +.......|.+|-.++...|..++|+.+...-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 778888898889999999888764421 122345678889999999999999988776543
No 290
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.39 E-value=2.3 Score=31.06 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=49.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh---
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK--- 92 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 92 (217)
=|++++..++|.+++...-+--+.--+.-.......|-.|.+.+++..+.++-..-.+..-.-+..-|..+...|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36677777777777766554433222223334444555577777777777766655443222233346665555544
Q ss_pred --cCCHHHHHHHH
Q 035645 93 --AGMIDEAFRLL 103 (217)
Q Consensus 93 --~~~~~~a~~~~ 103 (217)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 47777777665
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.31 E-value=0.32 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNL 106 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (217)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444555555555555555555444
No 292
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.31 E-value=1.6 Score=30.20 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCc-----ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFP-----SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 163 (217)
-+.+.|++++|..-|.+.+..- ++.. ..|..-..++.+.+.++.|+.--.+.++.+.. .......-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 4667788888888888877653 2221 23444456677778888877777766665321 122222334466677
Q ss_pred CCHHHHHHHHHHHHHcC
Q 035645 164 GRFVEAANYLMEMTEMG 180 (217)
Q Consensus 164 g~~~~a~~~~~~~~~~~ 180 (217)
..+++|++=++.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 77888888888777654
No 293
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.31 E-value=1.7 Score=30.52 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCcccHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG--HNPFPSLYAPIIK 123 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~ 123 (217)
|.+..++.+.+.++..+++...+.-.+.. +.|...-..++..++-.|+|++|..-++-.-... ..+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34555667777788888888877666543 2355666778888888888888877666554331 1222344555444
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.25 E-value=0.089 Score=24.74 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=6.4
Q ss_pred hHHHHHHHHHhcCCHHH
Q 035645 82 TYKILIPAVSKAGMIDE 98 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~ 98 (217)
+|+.+...|...|++++
T Consensus 15 a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYEE 31 (34)
T ss_pred HHHHHHHHHHHCcCHHh
Confidence 33333333333333333
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.13 E-value=0.33 Score=22.27 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=6.1
Q ss_pred HHHhcCchhHHHHHHHH
Q 035645 54 TICKSGEVEFCVEMYYS 70 (217)
Q Consensus 54 ~~~~~~~~~~a~~~~~~ 70 (217)
++...|++++|++.|++
T Consensus 10 ~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 10 AYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHTT-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 33333333333333333
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.10 E-value=2.6 Score=30.94 Aligned_cols=162 Identities=14% Similarity=0.075 Sum_probs=99.9
Q ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCCh------hhHHHHHHHHHhcC-chhHHHHHHHHHHhc--------CCCcc---
Q 035645 20 LLNAGYLESAKQMVNKMIKQG--SDPDL------ETFNSLIETICKSG-EVEFCVEMYYSVCKL--------GSCAD--- 79 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~--~~~~~------~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~--- 79 (217)
..+.|+++.|..++.+..... ..|+. ..|+.-... .+.+ +++.|...+++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999987642 23332 123333333 3445 888888877766432 11222
Q ss_pred --hhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 80 --VSTYKILIPAVSKAGMID---EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 80 --~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
..++..++.+|...+..+ +|.++++.+.+.. +-.+.++..-+..+.+.++.+++.+++..|... +......+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHH
Confidence 356778888888877765 4566666664432 223556667778888899999999999999876 221334444
Q ss_pred HHHHHH---hcCCCHHHHHHHHHHHHHcCCCCCh
Q 035645 155 TLITMC---GRGGRFVEAANYLMEMTEMGLTPIS 185 (217)
Q Consensus 155 ~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 185 (217)
..+..+ ... ....+...+..+....+.|..
T Consensus 160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 444443 333 345666777666644444444
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.03 E-value=0.36 Score=36.09 Aligned_cols=54 Identities=13% Similarity=-0.013 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
+-|.+.|.+++|++.|..-.... +.+..++..-..+|.+...+..|+.--....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34666777777777777655442 2366777777777777777776665554444
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.98 E-value=1.8 Score=28.74 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=65.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFN-SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (217)
++..-.+.++.+.+..++..+.-. .|...... .-...+...|+|.+|+++|+.+.... |.......|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 344455678999999999998764 34433222 33445788999999999999997653 44444445555554432
Q ss_pred CHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH
Q 035645 95 MIDEAFRL-LHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFC 136 (217)
Q Consensus 95 ~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 136 (217)
. +..++. -++..+.+-.|+.. .+++.+....+...|..
T Consensus 92 ~-D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 92 G-DPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred C-ChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 2 222222 33455554333322 35555555555444444
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.81 E-value=0.2 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHHHhcCchhHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCV 65 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~ 65 (217)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6677777777777888777765
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.74 E-value=2.1 Score=28.95 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=52.8
Q ss_pred hcCchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-cHHHH--HHHHHhcCChH
Q 035645 57 KSGEVEFCVEMYYSVCKLGSCADV-STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS-LYAPI--IKGAFRRGQFD 132 (217)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--l~~~~~~g~~~ 132 (217)
+.+..++|+..|..+.+.|...-+ .............|+...|...|++.-...-.|-.. -..-| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 444555555555555544332111 111122233444555555555555555443222221 00111 11233455555
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
....-.+-+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555444333222223333444444556666666666655553
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.74 E-value=3.9 Score=32.08 Aligned_cols=192 Identities=11% Similarity=0.028 Sum_probs=110.5
Q ss_pred HHhcCCHHHHHHHHHHHhhC--CCCC------------ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC----cchh
Q 035645 20 LLNAGYLESAKQMVNKMIKQ--GSDP------------DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC----ADVS 81 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 81 (217)
+.+.+.+++|.+.+..-.++ +-.| |-..=+..+.++...|++.++..+++++...-++ -+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34678899999988777654 3222 1122246778889999999999999988765333 6788
Q ss_pred hHHHHHHHHHhcCC---------------HHHHHHHHHHHHhC------CCCCCcccHHHHHHHHHhcC-----ChHHHH
Q 035645 82 TYKILIPAVSKAGM---------------IDEAFRLLHNLVED------GHNPFPSLYAPIIKGAFRRG-----QFDDAF 135 (217)
Q Consensus 82 ~~~~ll~~~~~~~~---------------~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g-----~~~~a~ 135 (217)
+|+.++-.+++.=- ++.+.-..+++... .+.|-......++....-.. -+-.+.
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 89987777665411 11222222222211 12233333333333322211 112222
Q ss_pred HHHHHHHhcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 136 CFFSEIKIKGHPPNR-PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP----ISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
..| .+.-+.|+- -+...++..+.. +.+++..+-+.+....+.+ -..+|..++....+.++..+|.+.+..
T Consensus 249 ~~W---e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 249 ENW---ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHH---HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333 233344552 333444455444 5566666665555433222 235788889999999999999999988
Q ss_pred HhhhcC
Q 035645 211 EVSLRS 216 (217)
Q Consensus 211 ~~~~~~ 216 (217)
...++|
T Consensus 324 L~~ldp 329 (549)
T PF07079_consen 324 LKILDP 329 (549)
T ss_pred HHhcCC
Confidence 887765
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.70 E-value=3.3 Score=32.83 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 14 DLLVQGLLNAGYLESAKQ-MVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
..-|.-....|++-.|-+ ++..++...-.|+.... ....+...|+++.+...+...... +.....+..+++....+
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 333444556677766544 44444444333444333 333456678888888888776543 33456777888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
.+++++|..+-..|+...+.. +.......-..-..|-+|++...|+.+...
T Consensus 370 l~r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhhHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 889999988888888766542 333333333344567788888888776543
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=4 Score=33.26 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
...+.+...+.+.|..++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 45667777777788777776652 12211 1223345677777766654442 344577777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
.+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. | ....++...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHH
Confidence 777777777777765432 344555666666666555555555555432 1 2222344566666666
Q ss_pred HHHHH
Q 035645 171 NYLME 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
+++..
T Consensus 742 ~lLi~ 746 (794)
T KOG0276|consen 742 ELLIS 746 (794)
T ss_pred HHHHh
Confidence 66543
No 304
>PRK11906 transcriptional regulator; Provisional
Probab=92.48 E-value=4.3 Score=31.92 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLME 175 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 175 (217)
.+|.++-++..+.+ +.|..+...+-.+....++++.|...|+..... .|| ..+|......+.-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555555554 345555555555556666666666666666554 333 33444444444456666666666666
Q ss_pred HHH
Q 035645 176 MTE 178 (217)
Q Consensus 176 ~~~ 178 (217)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 444
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=5.6 Score=32.50 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=49.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
.+.|+++.|.++..+.. +..-|..|-++..+.|++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 35566666665544332 344566666666666666666666664432 334444455555555444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 171 NYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
.+-....+.| +.| .-..+|...|+++++.+++
T Consensus 713 ~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 713 VLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHH
Confidence 4444444444 221 2223334445555555554
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.15 E-value=7.9 Score=34.20 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=64.3
Q ss_pred CcchhhHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-
Q 035645 77 CADVSTYKILI----PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP- 151 (217)
Q Consensus 77 ~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 151 (217)
.|+...+..+. .-+.+...+++|.-.|+..-+ ....+.+|..+|+|.+|+.+...+... -+..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 34554444433 333445666666666654322 123466777777777777777765421 1221
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 152 -VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 152 -~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
+-..|+.-+...+++-+|-++..+.... ....+..|++...|++|.++....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2256777777888888888777655431 223444455556666666655443
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.97 E-value=5.4 Score=31.92 Aligned_cols=165 Identities=13% Similarity=0.055 Sum_probs=116.6
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 43 PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
.|....-+++..+.++-.+.-+..+-.+|...| -+...|..++.+|... ..+.-..+|+++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556677888888888888888888888754 5778888999999888 677788999988887642 333333444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-----CCHhHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHH
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGHP-----PNRPVYTTLITMCGRGGRFVEAANYLMEMT-EMGLTPISRCFDLVTDGLK 196 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 196 (217)
..|- .++.+.+...|.+....=++ .-...|..++.. -..+.+....+..++. +.|...-...+.-+-.-|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 48888888999888765221 012466666553 2456777777777776 3555556667778888899
Q ss_pred hcCCchHHHHHHHHHhhh
Q 035645 197 NCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~ 214 (217)
...++++|.+++.-+.++
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 999999999999855544
No 308
>PHA02875 ankyrin repeat protein; Provisional
Probab=91.94 E-value=4.5 Score=31.51 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=28.7
Q ss_pred CCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCchhHHHHHH
Q 035645 3 DKGFNPPVRG--RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLE--TFNSLIETICKSGEVEFCVEMY 68 (217)
Q Consensus 3 ~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 68 (217)
+.|..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 3455554432 33445555666766533 3334445444322 1122344445566665544444
No 309
>PRK11906 transcriptional regulator; Provisional
Probab=91.90 E-value=5.2 Score=31.51 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=105.1
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHhh-CCCCCC-hhhHHHHHHHHHh---------cCchhHHHHHHHHHH
Q 035645 11 RGR--DLLVQGLLNA-----GYLESAKQMVNKMIK-QGSDPD-LETFNSLIETICK---------SGEVEFCVEMYYSVC 72 (217)
Q Consensus 11 ~~~--~~ll~~~~~~-----g~~~~a~~~~~~m~~-~~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 72 (217)
..| ...+.+.... -..+.|..+|.+... +...|+ ...|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5666665552 235678888999882 234454 4455544444332 223456777777777
Q ss_pred hcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--
Q 035645 73 KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR-- 150 (217)
Q Consensus 73 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 150 (217)
+.+. -|......+..+..-.++.+.|..+|++....+ +....+|......+.-.|+.++|.+.+++..+. .|..
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~ 407 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRK 407 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhH
Confidence 7643 377777788888888888999999999998875 333456666666777899999999999996654 3432
Q ss_pred -hHHHHHHHHHhcCCCHHHHHHHHHH
Q 035645 151 -PVYTTLITMCGRGGRFVEAANYLME 175 (217)
Q Consensus 151 -~~~~~li~~~~~~g~~~~a~~~~~~ 175 (217)
......++.|+..+ .+.+.+++-+
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 33334455666554 6777777644
No 310
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.86 E-value=1.1 Score=25.67 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=24.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCchHHHHHH
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPI--SRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
..++.++|+..|....+.-..|. ..++..++.+|+.-|+++++.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655554322221 125555666666666666655554
No 311
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.69 E-value=4 Score=29.84 Aligned_cols=126 Identities=10% Similarity=0.058 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC-----C-CCC-------hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQG-----S-DPD-------LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD 79 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~-~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (217)
.....+.+.-..||..|++.-++-.+.= . .++ ......=|.+++..++|.+++...-+--+.--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3444445556788988888887765421 1 111 11233457889999999998877554433222233
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-----hcCChHHHHHHH
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF-----RRGQFDDAFCFF 138 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~g~~~~a~~~~ 138 (217)
..+....|-.|++.+++..+.++-..-...--.-+...|..++..|. =.|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45677788889999999998888776654321222334777766654 458888888877
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.51 E-value=2.8 Score=29.50 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc--CCCcchhhHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL--GSCADVSTYKILIPA 89 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~ 89 (217)
|.+..+..+.+.+.+.+++...++-++.. +.|...-..++..++-.|+|++|..-++-.-.. ...+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 55667888899999999999998877763 336667778999999999999999888766442 223345667666654
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.48 E-value=9.5 Score=33.75 Aligned_cols=22 Identities=27% Similarity=0.108 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 035645 189 DLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
..|+.-+...++.-+|-++...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHH
Confidence 4455556666666666665543
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.36 E-value=2.3 Score=31.24 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
+++...+.|..+|.+.+|.++.++..... +.+...+-.++..+...|+--.+.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44556677777888888888887776642 3466667777788888887777776666654
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.31 E-value=4.5 Score=29.70 Aligned_cols=198 Identities=10% Similarity=0.038 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCC-----hhhHHHHHHHHHhcCchh---HHHHHHHHHHhcCC
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQ--------GSDPD-----LETFNSLIETICKSGEVE---FCVEMYYSVCKLGS 76 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~~~~-----~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~ 76 (217)
||.-...+.+..+++.|..++++..+. ...|+ ..+...++.+|...+..+ +|.++.+.+.+. .
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~ 117 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-Y 117 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-C
Confidence 444444443333888888877765432 12222 245667888888877655 455566666443 2
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCCCHh-HH
Q 035645 77 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR--GQFDDAFCFFSEIKIKGHPPNRP-VY 153 (217)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~-~~ 153 (217)
+-...++-.-+..+.+.++.+.+.+.+.+|...- ......+..++..+... .....|...+..+....+.|... ..
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~ 196 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWL 196 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHH
Confidence 2235666677777777899999999999998762 32445566666665222 23445666666665443444443 11
Q ss_pred HH-HH---HHHhcCC------CHHHHHHHHHHHHH-cCCCCChhhHHHH-------HHHHHhcCCchHHHHHHHHHh
Q 035645 154 TT-LI---TMCGRGG------RFVEAANYLMEMTE-MGLTPISRCFDLV-------TDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 154 ~~-li---~~~~~~g------~~~~a~~~~~~~~~-~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~ 212 (217)
.. ++ -...+.+ +.+...+++....+ .+.+.+..+-.++ ...+.+.++++.|.+.++...
T Consensus 197 e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 197 EKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11 11 1112221 24455555554332 2333343332222 334557899999999998654
No 316
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.16 E-value=3.4 Score=28.00 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=56.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-HHHHH--HHHHhcCCCHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPS-LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP-VYTTL--ITMCGRGGRFV 167 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~ 167 (217)
+.+..++|+.-|..+.+.|...-+. ..--........|+...|...|.+.-.....|-.. -..-| .-.+...|-++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 4445566666666666554322111 11112233445566666666666655443333221 11111 11234556666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
....-.+-+...+-+.-...-..|..+-.+.|++..|.+.|+.+.
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 655555554433323333344455555556666666666665543
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.16 E-value=0.68 Score=23.28 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQG 40 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~ 40 (217)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566677777777777777666543
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.42 E-value=0.48 Score=21.50 Aligned_cols=25 Identities=16% Similarity=-0.039 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 190 LVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.+..++.+.|++++|.+.++.+.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 319
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.35 E-value=3.2 Score=26.36 Aligned_cols=36 Identities=6% Similarity=0.117 Sum_probs=17.8
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 035645 37 IKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72 (217)
Q Consensus 37 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 72 (217)
...++.|++......+++|.+.+++..|+++|+-++
T Consensus 76 ~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 76 FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444555555555555555555555555554443
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.93 E-value=5 Score=27.95 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCcc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 55 ICKSGEVEFCVEMYYSVCKLGSCAD-----VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
+...|++++|..-|.+.+.. .++. ...|..-..++.+.+.++.|+.--....+.+ +....+..--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 45667777777777776653 1211 2344555556677777777776666666554 112223333345677777
Q ss_pred ChHHHHHHHHHHHhc
Q 035645 130 QFDDAFCFFSEIKIK 144 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~ 144 (217)
.+++|++=|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777777665
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.77 E-value=1.2 Score=20.41 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
|..+...|...|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555443
No 322
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=89.68 E-value=4 Score=31.34 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 84 KILIPAVSKAGMID---EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 84 ~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
..++..+.+.++.. +|..+++...... +.+...--.+++.|...|..+.|...|..+.-+.+.-|+..+..+ .-+
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~-~r~ 261 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLIL-DRL 261 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHH-HHH
Confidence 44555555555544 5667777766654 445556667889999999999999999987555454444333322 222
Q ss_pred hcCCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 161 GRGGRFVEAA-NYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 161 ~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
...|....+. ..+......-..-...+=..++.+| +.|.+.+..++.+.-.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af-~~gsysKi~ef~~F~~rL 315 (365)
T PF09797_consen 262 STLGPFKSAPENLLENALKFYDNSEKETPEFIIKAF-ENGSYSKIEEFIEFRERL 315 (365)
T ss_pred hccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHH
Confidence 2233333322 3333322110011112223344444 667777777776654443
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.38 E-value=11 Score=30.95 Aligned_cols=179 Identities=16% Similarity=0.091 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHH--HHHH-HHhcCchhHHHHHHHHHHh-------cCCCcchhhHHHHHHHHHhcC-
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNS--LIET-ICKSGEVEFCVEMYYSVCK-------LGSCADVSTYKILIPAVSKAG- 94 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~- 94 (217)
...+.++++...+.|.. ....... .... +....+.+.|+..|+...+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45677788777776532 1111111 2222 4456788888888888765 33 3345566666676643
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH--hcCCCHH
Q 035645 95 ----MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR-RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC--GRGGRFV 167 (217)
Q Consensus 95 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~ 167 (217)
+.+.|..++.+.-+.| .|+....-..+.-... ..+...|.++|....+.|..+ ...+-++.-.. ....+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHH
Confidence 5677888888888777 3443332222222222 245678888888888887542 22222222111 2344677
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
.|..++++.-+.| .|...--...+..+.. +..+.+.-.+..+.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 8888888888777 3332212223333333 55555554444433
No 324
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.37 E-value=3.5 Score=31.16 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=52.4
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 035645 53 ETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131 (217)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 131 (217)
+-|.+.|.+++|++.|.+-... .| +.+++..-..+|.+..++-.|..=.......+ ..-..+|.--..+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 3467788888888888877653 34 77778777888888888777665555544332 11122333333333344455
Q ss_pred HHHHHHHHHHHh
Q 035645 132 DDAFCFFSEIKI 143 (217)
Q Consensus 132 ~~a~~~~~~~~~ 143 (217)
.+|.+-++....
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555554444443
No 325
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.24 E-value=2.2 Score=24.50 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=24.2
Q ss_pred hcCchhHHHHHHHHHHhcCCCcc--hhhHHHHHHHHHhcCCHHHHHHH
Q 035645 57 KSGEVEFCVEMYYSVCKLGSCAD--VSTYKILIPAVSKAGMIDEAFRL 102 (217)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~ 102 (217)
..++.++|+..|....+.-..+. ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666544322221 13455566666666666655544
No 326
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.20 E-value=2.1 Score=27.18 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 035645 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTD 193 (217)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (217)
+..+-+..+....+.|++.....-+.+|-+.+++..|.++|+-++.+- .+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 445555556666778888888888888888888888888887776432 233334555443
No 327
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.05 E-value=9 Score=29.67 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=67.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-CCCcchhhH--HHHHHHHHh---c
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL-GSCADVSTY--KILIPAVSK---A 93 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~--~~ll~~~~~---~ 93 (217)
.-+.|..+.|.+.-+..-+.- +.-...+...+...+..|+|+.|+++.+.-... -+.++..-- -.|+.+-.. .
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 446788888888888776542 224567889999999999999999999876543 233333211 112111100 1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccc-HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFPSL-YAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
-+...|...-.+..+ +.|+... -..-..++.+.|+..++-.+++.+-+.
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 122333333322222 2333321 122335566666666666666665544
No 328
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.93 E-value=4.3 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=22.3
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
..|++.+|..++.++...|+.++|.++..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356667777777777777777777766666665
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.92 E-value=0.8 Score=19.87 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 188 FDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
+..+...+...|+++.|...++...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444555555555555544443
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.81 E-value=6 Score=27.33 Aligned_cols=92 Identities=15% Similarity=0.027 Sum_probs=52.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCC
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPF--PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 164 (217)
...+...+++++|...++........-+ ..+--.|.+.....|.+|+|+..+......+. .......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3446667777777777776654311111 11122334556677777777777776554432 2223333456677777
Q ss_pred CHHHHHHHHHHHHHcC
Q 035645 165 RFVEAANYLMEMTEMG 180 (217)
Q Consensus 165 ~~~~a~~~~~~~~~~~ 180 (217)
+-++|..-|......+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777776654
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.67 E-value=1.5 Score=22.00 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
+..+|...|+.+.|.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.62 E-value=12 Score=30.63 Aligned_cols=154 Identities=17% Similarity=0.172 Sum_probs=92.9
Q ss_pred HHhcCCHHHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcC-----chhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 20 LLNAGYLESAKQMVNKMIK-------QGSDPDLETFNSLIETICKSG-----EVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
+....+++.|+..|+.+.+ .| ......-+..+|.+.. +.+.|..+|...-+.|. |+...+-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 4456789999999998876 44 3345566677776643 56779999988877764 3443332222
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCC
Q 035645 88 PAVSK-AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF--RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 88 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 164 (217)
..... ..+...|.++|...-+.|..+ ..-+..++-... ...+.+.|..+++...+.| .|...--...+..+.. +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22222 246789999999999888432 222222221111 3347888999999988887 3332222223333444 6
Q ss_pred CHHHHHHHHHHHHHcC
Q 035645 165 RFVEAANYLMEMTEMG 180 (217)
Q Consensus 165 ~~~~a~~~~~~~~~~~ 180 (217)
+++.+.-.+..+...|
T Consensus 412 ~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 412 RYDTALALYLYLAELG 427 (552)
T ss_pred cccHHHHHHHHHHHhh
Confidence 6666666665555544
No 333
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.61 E-value=11 Score=29.89 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-------HHHHHHHh----cCchhHHHHHHHHHHhcCCCc
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFN-------SLIETICK----SGEVEFCVEMYYSVCKLGSCA 78 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 78 (217)
..+|..++....+.++...|.+.+.-+..- .|+...-. .+-+..+. .-+...-+.+|+......+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 356788888888999999998888877653 23322111 11122221 111223344444444332211
Q ss_pred chhhHHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCCcccHHHHH----HHHHh---cCChHHHHHHHHHHHhcCCC
Q 035645 79 DVSTYKILI---PAVSKAGM-IDEAFRLLHNLVEDGHNPFPSLYAPII----KGAFR---RGQFDDAFCFFSEIKIKGHP 147 (217)
Q Consensus 79 ~~~~~~~ll---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~---~g~~~~a~~~~~~~~~~~~~ 147 (217)
...-.-|+ .-+.+.|. -++|.++++..++-. +.|..+-|.+. .+|.. ...+..-..+-.-+.+.|++
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 11111222 22344444 556666666655431 12222222111 11211 12333334444444455555
Q ss_pred CCH----hHHHHHHHH--HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 148 PNR----PVYTTLITM--CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 148 ~~~----~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
|-. ..-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|..+++.+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 432 233333322 3355666666544443333 4566666666666666666666666666543
No 334
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.10 E-value=10 Score=29.10 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C--CCcccHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCCHhH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDGH---N--PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI----KGHPPNRPV 152 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~ 152 (217)
...++..++...+.++++.+.|+...+... . ....+|..+-..|.+..++++|.-+..+..+ .++..=..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 344566777778889999999888765321 1 2345788899999999999998877766532 233211122
Q ss_pred HHH-----HHHHHhcCCCHHHHHHHHHHHH----HcCCCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 153 YTT-----LITMCGRGGRFVEAANYLMEMT----EMGLTP-ISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 153 ~~~-----li~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
|.. |..++-..|+.-.|.+.-++.. ..|-.+ .......+.+.|...|+.|.|..-++.+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222 3345556677777766666654 344333 23355678889999999998887766544
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.61 E-value=13 Score=29.74 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHhcCchhHHH-HHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH
Q 035645 55 ICKSGEVEFCV-EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133 (217)
Q Consensus 55 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 133 (217)
-...|+...|- +++.-+......|+.....+ ..+...|+++.+...+...... +.....+...+++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 33456665554 45555555434455444333 3466789999998887766543 23456678889999999999999
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
|..+-.-|....+. ++..........-..|-++++.-.|+.+..
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 99999888877554 444444333344566778888888888764
No 336
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.10 E-value=2.8 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=15.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVT 192 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (217)
+.|-.+++...++.|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444445555555555555555555444443
No 337
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=86.99 E-value=1.7 Score=28.43 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=47.9
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 31 QMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 31 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
++.+.+.+.|.+++.. -..++..+.+.++.-.|.++|+++.+.+...+..|-..-++.+...|-+.
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 4455566777765543 34566777777777889999999988877777777777778888887664
No 338
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.57 E-value=3 Score=21.36 Aligned_cols=31 Identities=10% Similarity=0.335 Sum_probs=15.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLI 52 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 52 (217)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444445555555555555544444444433
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.50 E-value=12 Score=28.24 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 115 PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP---NRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 115 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
..+|..+++.+-+.|+++.|...+..+...+..+ ++...-.-.+.+-..|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777888888888888888888776643111 233444445566667788888887777665
No 340
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=86.21 E-value=8.5 Score=28.68 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035645 66 EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
++|+.+...++.|.-.+|.=+.-.+++.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555666655555555555555555666666666554
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=11 Score=26.99 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=80.1
Q ss_pred HHHHhcCCHHHHHHHHHHHh----hCCCCCChh-hHHHHHHHHHhcCchhHHHHHHHHHHhc----C-CCcchhhHHHHH
Q 035645 18 QGLLNAGYLESAKQMVNKMI----KQGSDPDLE-TFNSLIETICKSGEVEFCVEMYYSVCKL----G-SCADVSTYKILI 87 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll 87 (217)
+.|--..+|+.|=..|.+.- +.|-+.|.. +|....++ .+..++++|.+.++..++. | +..-....-.+.
T Consensus 42 n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 42 NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence 33444445555555444432 233333443 33334443 3445777766666655432 1 111112223455
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC--CCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHH---HH-
Q 035645 88 PAVSKA-GMIDEAFRLLHNLVED--GHNPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTT---LI- 157 (217)
Q Consensus 88 ~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li- 157 (217)
..|-.. .++++|+..|++.-+. |-..+. ..+..+....+..+++.+|+++|+++....+..+.--|+. ++
T Consensus 121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyflk 200 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLK 200 (288)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHH
Confidence 555443 6677788777776542 112222 2333444555778899999999999876644433333332 11
Q ss_pred HHHhc--CCCHHHHHHHHHHHHHcC
Q 035645 158 TMCGR--GGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 158 ~~~~~--~g~~~~a~~~~~~~~~~~ 180 (217)
.++|+ ..+.-.+...+++..+..
T Consensus 201 AgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 201 AGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHhHhcccHHHHHHHHHHHHhcC
Confidence 11222 244445555555555543
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.45 E-value=8.2 Score=25.39 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=39.4
Q ss_pred HhcCchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 56 CKSGEVEFCVEMYYSVCKLGSCADV-STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
...++++++..+++.|.- ..|+. ..-..-.-.+...|+|++|.++|+++.+.+ ....|..-+.++|-.
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~---~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA---GAPPYGKALLALCLN 89 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC---CCchHHHHHHHHHHH
Confidence 346777888888877754 23433 222223334667788888888888877654 122344444444443
No 343
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.43 E-value=5.9 Score=32.49 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVTD 193 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (217)
+.|++.+|.+.+-.+......|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777777777777777666666554444443
No 344
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=85.06 E-value=1.4 Score=28.15 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=23.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 126 FRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
-..|.-..|..+|+.|++.|-+|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345666677888888888887776 466666543
No 345
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.76 E-value=16 Score=28.11 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=117.9
Q ss_pred HHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCchhHHHHHHHH----HHhcC-CCcchhhHHHHHHHHHh
Q 035645 20 LLNAGYLESAKQMVNKMIKQ--GSDPDLETFNSLIETICKSGEVEFCVEMYYS----VCKLG-SCADVSTYKILIPAVSK 92 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~ll~~~~~ 92 (217)
+....+.++|+..|.+-..+ +..-.-.++..+..+.++.|.+++++..--. ..+.. -..-...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888776543 1111234566777888888888876654221 11100 01123456666666666
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCHhHHHHHHHHHhcC
Q 035645 93 AGMIDEAFRLLHNLVED-GHNP---FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG-----HPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~ 163 (217)
..++.+++.+-..-... |..| .-....++-.++...+.++++++.|+...+.- ......+|..|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666655443322 2222 11334456677778888999999998875431 122346888999999999
Q ss_pred CCHHHHHHHHHHHHH----cCCCCChhhHH-----HHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 164 GRFVEAANYLMEMTE----MGLTPISRCFD-----LVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 164 g~~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.++++|.-+..+..+ .++.--..-|. .+.-++...|....|.+.-+...++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 999999877766542 33222222233 3456788888888888776655443
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=14 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 154 TTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 154 ~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
.-++..+.+.|.+.+|..+...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 346667778888888777665543
No 347
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.63 E-value=8.9 Score=25.10 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=49.6
Q ss_pred HHhcCCCcch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C--CCCcccHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 035645 71 VCKLGSCADV--STYKILIPAVSKAGMIDEAFRLLHNLVEDG---H--NPFPSLYAPIIKGAFRRGQ-FDDAFCFFSEIK 142 (217)
Q Consensus 71 ~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~ 142 (217)
|.+.+..++. ...|.++.-....+.......+++.+.... + ..+...|.+++.+.++..- --.+..+|.-++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444444444 335566666666677777666666653211 0 1234456666666655544 334455555555
Q ss_pred hcCCCCCHhHHHHHHHHHhcC
Q 035645 143 IKGHPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 143 ~~~~~~~~~~~~~li~~~~~~ 163 (217)
+.+.+++..-|..+|+++.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 555556666666666655443
No 348
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=13 Score=26.70 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHhc--CCCCCHhHHHHH---HHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 129 GQFDDAFCFFSEIKIK--GHPPNRPVYTTL---ITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 129 g~~~~a~~~~~~~~~~--~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
.+++.|+..|+..-+. |-..+...--++ ...-+..+++.+|+++|++.....+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666677766665442 222222222233 3334577899999999998876543
No 349
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=83.77 E-value=9.8 Score=24.90 Aligned_cols=65 Identities=14% Similarity=-0.029 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 035645 67 MYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132 (217)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 132 (217)
+...+.+.|.+++.. -..++..+.+.+..-.|.++++++.+.+...+..|...-++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344556666665442 34566666666666778888888887765555555555667777776543
No 350
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.66 E-value=8.7 Score=26.39 Aligned_cols=60 Identities=17% Similarity=0.045 Sum_probs=39.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHh-cCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCK-LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
..+.......+.+......+...+ ....|+..+|..++.++...|+.++|.++..++...
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333344444444433333321 225688888999999999999999998888888765
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.63 E-value=7.8 Score=23.61 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=23.2
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
.+.+.|++++|..+.+.+ ..||...|-+|-. .+.|.-+.+..-+..|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555554433 2445555544432 24444444444444444443
No 352
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.56 E-value=2.5 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=14.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 191 VTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+.-++.+.|++++|.+..+.+.+.+|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 44455556666666666655555544
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.33 E-value=12 Score=24.71 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLET-FNSLIETICKSGEVEFCVEMYYSVCKLG 75 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 75 (217)
-...++++++..+++.|.-. .|+..- -..-...+...|+|++|+++|+.+.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34579999999999998763 343322 2223344678999999999999998764
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.92 E-value=41 Score=32.65 Aligned_cols=150 Identities=12% Similarity=-0.004 Sum_probs=84.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcC--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKLG--SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (217)
.+..+-.+++.+.+|+..+++-.... .......|..+...|...+++|+...+...... +.. ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 34445667788888888888731110 011223344455588888888887776654111 122 2334555677
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCchHHHH
Q 035645 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR-CFDLVTDGLKNCGKHDLAEK 206 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 206 (217)
.|++..|...|+.+.+.+ ++...+++-++......|.++.+....+.....- .+... -++.=+++--+.++++..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 888888888888887763 2235667766666666677666665444433221 11111 12222333356666665555
Q ss_pred H
Q 035645 207 I 207 (217)
Q Consensus 207 ~ 207 (217)
.
T Consensus 1540 ~ 1540 (2382)
T KOG0890|consen 1540 Y 1540 (2382)
T ss_pred h
Confidence 4
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.45 E-value=19 Score=26.52 Aligned_cols=202 Identities=12% Similarity=0.118 Sum_probs=126.7
Q ss_pred CCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCchhHHHHHHHHHHh---cC
Q 035645 3 DKGFNPPVRGRDLLVQG-LLNAGYLESAKQMVNKMIKQGSDPDL---ETFNSLIETICKSGEVEFCVEMYYSVCK---LG 75 (217)
Q Consensus 3 ~~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~ 75 (217)
+.+-.||+..=|..-.. -.+...+++|+.-|++..+...+-.. .+...++..+.+.+++++..+.|.++.. +.
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 45667777664442221 12345799999999998874322222 2345678889999999999999988852 22
Q ss_pred CC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 035645 76 SC--ADVSTYKILIPAVSKAGMIDEAFRLLHNLVE----D-GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK---- 144 (217)
Q Consensus 76 ~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 144 (217)
+. -+....|++++..+...+.+-...+++.-++ . +-..--.|-+.+-..|...|.+.+...+++++..+
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 22 2456678888877777776665555544322 1 11112234456777888888888888888887653
Q ss_pred -CCC------CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHH-----HhcCCchHHH
Q 035645 145 -GHP------PNRPVYTTLITMCGRGGRFVEAANYLMEMTE-MGLTPISRCFDLVTDGL-----KNCGKHDLAE 205 (217)
Q Consensus 145 -~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~-----~~~~~~~~a~ 205 (217)
|-. --...|..=|+.|....+-.+...+++.... ..-.|.+.... +|+-| .+.|+|++|.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHH
Confidence 110 1136777888888888888888888877664 23346555444 33333 3566776664
No 356
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=81.40 E-value=19 Score=30.18 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCchhH------HHHHHHHHHhcCCCcchhhHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQ--GSDPDLETFNSLIETICKSGEVEF------CVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
++..+|...|++.++.++++.+... |-+.-...+|..++...+.|.++- |.+.++ ...+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq---~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQ---QARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHH---HhhcCCcchHHHHH
Confidence 7888888888888888888887643 333345667778888888887653 222222 23344577777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~ 108 (217)
+.+-..--+-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665554334444455555554
No 357
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=81.39 E-value=6.7 Score=21.33 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 035645 86 LIPAVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~ 105 (217)
+|.++...|++++|.++.++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 358
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.22 E-value=17 Score=25.85 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 035645 23 AGYLESAKQMVNKMIKQGSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (217)
.|-+..|.-=|.+... +.| -+.+||.+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|+++-|.+
T Consensus 78 lGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence 3444444444444443 233 34466666666677777777777777776643222222222222 2334466666655
Q ss_pred HHHHHHhC
Q 035645 102 LLHNLVED 109 (217)
Q Consensus 102 ~~~~~~~~ 109 (217)
=+-+.-+.
T Consensus 155 d~~~fYQ~ 162 (297)
T COG4785 155 DLLAFYQD 162 (297)
T ss_pred HHHHHHhc
Confidence 55544443
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.05 E-value=15 Score=25.14 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCCCh-hhHHHHHHHHHhcCc-----------hhHHHHHHHHHHhcC
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQ-----GSDPDL-ETFNSLIETICKSGE-----------VEFCVEMYYSVCKLG 75 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~-~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~~ 75 (217)
|...+.-+++..+..++.+++++..+. .+.|+. .++..+..+|...+. +++|.+.|++...
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-- 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-- 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--
Confidence 333444444444444444444444321 234443 345555555443321 3445555555544
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
..|+..+|+.-+.... +|-++..++.+.
T Consensus 109 ~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 3577777777766643 344555555444
No 360
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=80.95 E-value=22 Score=29.83 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=52.5
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhc--CCCcchhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCcccHHHH
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKL--GSCADVSTYKILIPAVSKAGMID------EAFRLLHNLVEDGHNPFPSLYAPI 121 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 121 (217)
+|+.+|...|++-.+.++++..... |-+.-...+|..++-+.+.|.++ .|.+.+++.. +..|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999888643 33334567888888888888764 3444444443 44577788777
Q ss_pred HHHHH
Q 035645 122 IKGAF 126 (217)
Q Consensus 122 l~~~~ 126 (217)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 76643
No 361
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.90 E-value=2.3 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKG 124 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (217)
+|..+|..|++.|.+|| .|+.|+..
T Consensus 113 DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 113 DAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred cHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34556666666665443 34455443
No 362
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=80.09 E-value=17 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
..+..|.+.|.+++|.+++++..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc
Confidence 344567777777777777777665
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.94 E-value=32 Score=28.45 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
.++-.+.+++.-..++++|++.|++..+
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 3444444444444455555555544443
No 364
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.92 E-value=6.5 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=11.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 035645 155 TLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
.+|.++.+.|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555554443
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.75 E-value=37 Score=28.30 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=104.9
Q ss_pred HHHHHHHHh-hCCCCCC--hhhHHHHHHHHH-hcCchhHHHHHHHHHHhcCCCcch-----hhHHHHHHHHHhcCCHHHH
Q 035645 29 AKQMVNKMI-KQGSDPD--LETFNSLIETIC-KSGEVEFCVEMYYSVCKLGSCADV-----STYKILIPAVSKAGMIDEA 99 (217)
Q Consensus 29 a~~~~~~m~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a 99 (217)
|++.++.+. +..++|. ..++--+...+. ...++++|...+++....--.++. ..-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455566665 3334443 334445666555 678899999999877533222222 22334566666666555 8
Q ss_pred HHHHHHHHhCCCC----CCcccHHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCCCHhHHHHHHHHHh--cCCCHHHH
Q 035645 100 FRLLHNLVEDGHN----PFPSLYAPI-IKGAFRRGQFDDAFCFFSEIKIKG---HPPNRPVYTTLITMCG--RGGRFVEA 169 (217)
Q Consensus 100 ~~~~~~~~~~~~~----~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~a 169 (217)
...+++..+.--. +-...+..+ +..+...++...|.+.++.....- ..|-..++-.++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8888886653211 222233333 223333479999999998876532 2334455555555544 45666777
Q ss_pred HHHHHHHHHcCC---------CCChhhHHHHHHHHH--hcCCchHHHHHHHHHh
Q 035645 170 ANYLMEMTEMGL---------TPISRCFDLVTDGLK--NCGKHDLAEKIEQLEV 212 (217)
Q Consensus 170 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 212 (217)
.+.++.+..... .|-..++..+++.++ ..|+++.+...++.+.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777643211 334557777766655 5666667777665554
No 366
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.72 E-value=5.3 Score=29.56 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD 189 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (217)
.-|+..|....+.||+++|.+++++..+.|..--..+|-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345577777777777777777777777777655444443
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.39 E-value=19 Score=25.96 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 117 LYAPIIKGAFRRGQFDDAFCFFSEIKIK-----GHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 117 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
....+..-|.+.|++++|.++|+.+... -..+...+...+..++.+.|+.+....+--++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3345667778888888888888777422 13345566667777777888887776665444
No 368
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.11 E-value=6.8 Score=29.00 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 035645 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHP 147 (217)
Q Consensus 118 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 147 (217)
|+..|....+.|++++|+.++++....|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445566666666666666666666655544
No 369
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.08 E-value=19 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=27.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC
Q 035645 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 163 (217)
..+-.|.+.|.+++|.++++..... |+......-+....+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 3567899999999999999998763 3443334444444433
No 370
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.95 E-value=24 Score=25.64 Aligned_cols=57 Identities=9% Similarity=-0.070 Sum_probs=28.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
+++...|++-++.+.-.++.... +-+...|..=..+.+...+.++|.+=|+...+++
T Consensus 238 QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33444555555555555554432 2344455555555555555555555555555444
No 371
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.90 E-value=14 Score=22.83 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 153 YTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 153 ~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666554
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.25 E-value=49 Score=28.90 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcC---CCcchhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCcccHHH-
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLG---SCADVSTYKILIPAVSKAGMI--DEAFRLLHNLVEDGHNPFPSLYAP- 120 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 120 (217)
-|..|+..|...|..++|+++|......- -..-..-+..++..+.+.+.. +-.+++-....+.+..-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47888999999999999999999886531 111112233466666665554 555555555444321111112211
Q ss_pred -----------HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC--------CCHHHHHHH--HHHH---
Q 035645 121 -----------IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG--------GRFVEAANY--LMEM--- 176 (217)
Q Consensus 121 -----------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~--~~~~--- 176 (217)
-+-.|......+.+...++.+....-.++....+.++..|++. ++-+++.+. -+.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 2334566677778888888887766666777778887777532 122233333 1111
Q ss_pred H--HcCCCC--------ChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 177 T--EMGLTP--------ISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 177 ~--~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
. .....| ....|....-.+.+.|+.++|..++-..
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~ 710 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE 710 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1 112222 2233444444455899999999886543
No 373
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=76.89 E-value=8.8 Score=26.52 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=37.0
Q ss_pred CCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCchhHHHHHH
Q 035645 3 DKGFNPPVRGRDLLVQGLLNAG----YLESAKQMVNKMIKQGSDPDLE----TFNSLIETICKSGEVEFCVEMY 68 (217)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~ 68 (217)
+.|+-++...++-++..+.+.. ..+.+..+=.+...+++.++-. ....-+..|-+.|+|.+.=.+|
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly 74 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLY 74 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHH
Confidence 4688888999998888776654 3444444444444445544322 2233344566666666533333
No 374
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.66 E-value=25 Score=25.10 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
.+||-+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 44555555555555555555555555443
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.43 E-value=29 Score=25.88 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH-------Hh-c------------------CCCcc
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSV-------CK-L------------------GSCAD 79 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~-~------------------~~~~~ 79 (217)
..+|.++|.-+.++.- ...+-..++.++....+..+|...+... .. . ++.-|
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 3567888887776421 2233345566666666655555544322 11 0 11234
Q ss_pred hhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC----------------CcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 80 VSTYKILIPAVSKA-GMIDEAFRLLHNLVEDGHNP----------------FPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 80 ~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
..-|...+.-.... ..++++.++.......-++- -..+++...+.|..+|.+.+|.++.+...
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44444444443322 33455555555443211110 01223444566777777777777777666
Q ss_pred hcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCChhhH
Q 035645 143 IKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT-----EMGLTPISRCF 188 (217)
Q Consensus 143 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 188 (217)
... +.+...+-.++..++..|+--.+.+-++.+. +.|+..+...+
T Consensus 307 tld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 307 TLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred hcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 552 3456666677777777777666665555543 34555554443
No 376
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=76.04 E-value=11 Score=20.61 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=14.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 035645 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIE 53 (217)
Q Consensus 21 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 53 (217)
...|++=+|.++++.+-.....+....+..+|.
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 345566666666666543322223334444443
No 377
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=75.96 E-value=27 Score=25.30 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=110.6
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGS--CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
...|+.-+ .-.+.|++++|.+.|+.+.+... +-...+--.++-++.+.+++++|....++............|..-|
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 33444444 34577999999999999975421 1134556667778889999999999999988764333334566666
Q ss_pred HHHHhc-------CChHH---HHHHHHHHHhc----CCCCCHhHH------------HHHHHHHhcCCCHHHHHHHHHHH
Q 035645 123 KGAFRR-------GQFDD---AFCFFSEIKIK----GHPPNRPVY------------TTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 123 ~~~~~~-------g~~~~---a~~~~~~~~~~----~~~~~~~~~------------~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
.+++.. .+... |..-|++++.. ...||...- ..+.+.|.+.|.+..|..-+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 665533 23333 44444444433 223333211 12346678899999999999999
Q ss_pred HHcC--CCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 177 TEMG--LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 177 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
++.- ..-.....-.+..+|...|-.++|.+.-+.+..
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9751 112334677889999999999999998876643
No 378
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=75.60 E-value=31 Score=25.76 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhCCC----CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 035645 96 IDEAFRLLHNLVEDGH----NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAAN 171 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 171 (217)
.+.|.+.|+.....+. ..++.....++....+.|..+.-..+++..... ++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4677888888876422 334555566777778888877666666655543 467778889999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCc--hHHHHHH
Q 035645 172 YLMEMTEMGLTPISRCFDLVTDGLKNCGKH--DLAEKIE 208 (217)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~ 208 (217)
+++.....+..++.. ...++.++...+.. +.+.+++
T Consensus 223 ~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHH
Confidence 998888754233333 34455555433433 5555554
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.25 E-value=47 Score=27.70 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=102.5
Q ss_pred hhHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCcch
Q 035645 11 RGRDLLVQGLL-NAGYLESAKQMVNKMIKQGSDPDLE-----TFNSLIETICKSGEVEFCVEMYYSVCKL----GSCADV 80 (217)
Q Consensus 11 ~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 80 (217)
.++-.+...+. ...+++.|...+++....--.++-. .-..++..+.+.+... |....++.++. +..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34555666655 6789999999999875432222222 2235667777777666 88888887543 222334
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCcccHHHHHHHHH--hcCChHHHHHHHHHHHhcC---------
Q 035645 81 STYKIL-IPAVSKAGMIDEAFRLLHNLVEDG---HNPFPSLYAPIIKGAF--RRGQFDDAFCFFSEIKIKG--------- 145 (217)
Q Consensus 81 ~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~--------- 145 (217)
..|..+ +..+...++...|.+.++.+.... ..|...++..++.+.. +.+..+++.+....+....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 445555 444444479999999998877542 2344455555555544 4455667777776663321
Q ss_pred CCCCHhHHHHHHHHHh--cCCCHHHHHHHHHHHH
Q 035645 146 HPPNRPVYTTLITMCG--RGGRFVEAANYLMEMT 177 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 177 (217)
..|...+|..+++.++ ..|+++.+...++.+.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345677888877654 6788777777766664
No 380
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=74.90 E-value=9.7 Score=21.03 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=15.0
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 75 (217)
....++.++..+++..-.+.++..+.+..+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444444443
No 381
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.80 E-value=26 Score=24.41 Aligned_cols=127 Identities=8% Similarity=0.026 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhH-----H
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFN--SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTY-----K 84 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~ 84 (217)
.|..++.... .+.. +.....+++..........++. .+...+...+++++|+.-++..... |....+ -
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444454443 2333 4445555555432221222222 3456688899999999999887653 222222 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
.|.......|.+|+|..+++.....+. .......--.++...|+-++|..-|......+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 455667788999999999987765432 12222333467899999999999999998875
No 382
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.67 E-value=72 Score=31.20 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGS--DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
++..+-.+++.+.+|...++.-..... .....-+-.+...|+.-+++|...-+...... .|+ ...-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 455566788899999999888411111 11233344555589999999988887764222 122 2234445677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHH-HHHHhcCCCHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTL-ITMCGRGGRFVEAAN 171 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~ 171 (217)
.|++..|...|+++.+.+ ++....++-++..-...|.++.+....+..... ..+....++.+ +.+--+.++++..+.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999998775 333666776776666677777666655444332 22233333332 333345555555555
Q ss_pred HH
Q 035645 172 YL 173 (217)
Q Consensus 172 ~~ 173 (217)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
No 383
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.06 E-value=34 Score=25.53 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhCCC----CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 035645 26 LESAKQMVNKMIKQGS----DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (217)
.+.|.+.|+.....+. ..+......++....+.|..+....+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5667777777776422 335555566677777777766655555555442 466677788888888888888888
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCh--HHHHHHHHH----HHhcCCCCCHhHHHHHHHHHhc
Q 035645 102 LLHNLVEDGHNPFPSLYAPIIKGAFRRGQF--DDAFCFFSE----IKIKGHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~ 162 (217)
+++.....+..++.. ...++.++...+.. +.+.+.+.. +.+. ...+......++..+..
T Consensus 223 ~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCT
T ss_pred HHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhc
Confidence 888888754222333 34444555433333 566665543 3222 22233355555555444
No 384
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.66 E-value=18 Score=22.11 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=21.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
+...|++++|..+.+.+ ..||...|-.+.. .+.|..+++..-+..+..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34445555555444333 1344444433322 24444444444444444443
No 385
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.36 E-value=16 Score=21.52 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=19.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHH
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 205 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (217)
..|+.+.|.+++..+. +| | ..|...+.++...|..+.|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 3455555555555555 33 1 13455555555555555443
No 386
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=73.34 E-value=30 Score=24.60 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=49.1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---ChhhHH--HHHHHHHhcCchhHHHHHHHHHHhcCCCcch
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDP---DLETFN--SLIETICKSGEVEFCVEMYYSVCKLGSCADV 80 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (217)
+.+...-+|.|+--|.-...+.+|-+.|.. +.|+.| +..+++ .-|....+.|+.+.|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344445566555555555445555555432 334443 333332 4556667778888777777766433233333
Q ss_pred hhHHHHHH----HHHhcCCHHHHHHHHHH
Q 035645 81 STYKILIP----AVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 81 ~~~~~ll~----~~~~~~~~~~a~~~~~~ 105 (217)
..+-.+.. =..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222111 13455666666666553
No 387
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=72.99 E-value=11 Score=23.22 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=20.3
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 55 ICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
+...+..-.|.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 10 l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 10 LLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 333344444555555555544444444444445555555443
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.80 E-value=17 Score=21.46 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=5.7
Q ss_pred CChHHHHHHHHHHH
Q 035645 129 GQFDDAFCFFSEIK 142 (217)
Q Consensus 129 g~~~~a~~~~~~~~ 142 (217)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444433
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.33 E-value=44 Score=26.05 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=41.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHHHh
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAVSK 92 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~ 92 (217)
+...++.|+.+.+..+ .+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHH
Confidence 4445566777665554 45676665433 2344555566777653 34444555544432 12234455556
Q ss_pred cCCHHHHHHHHH
Q 035645 93 AGMIDEAFRLLH 104 (217)
Q Consensus 93 ~~~~~~a~~~~~ 104 (217)
.|+.+.+..+++
T Consensus 78 ~g~~~~v~~Ll~ 89 (413)
T PHA02875 78 EGDVKAVEELLD 89 (413)
T ss_pred CCCHHHHHHHHH
Confidence 677665544443
No 390
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=72.32 E-value=42 Score=25.83 Aligned_cols=68 Identities=15% Similarity=0.017 Sum_probs=45.1
Q ss_pred HHHHHHHhcCchh---HHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH
Q 035645 50 SLIETICKSGEVE---FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY 118 (217)
Q Consensus 50 ~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (217)
.++..+.+.++.+ +|.-+++...... +.+...--.++..|...|-...|..+|..+.=..+..|+-.|
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h 255 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH 255 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH
Confidence 4455454555544 5666667665542 345566667899999999999999999887655444444443
No 391
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.06 E-value=29 Score=23.79 Aligned_cols=13 Identities=15% Similarity=-0.079 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHhc
Q 035645 81 STYKILIPAVSKA 93 (217)
Q Consensus 81 ~~~~~ll~~~~~~ 93 (217)
.++..+..+|...
T Consensus 70 dAlw~lGnA~ts~ 82 (186)
T PF06552_consen 70 DALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555666665544
No 392
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=71.95 E-value=14 Score=23.10 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 44455555555666666666666655555555555555555555443
No 393
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=71.89 E-value=28 Score=23.50 Aligned_cols=62 Identities=6% Similarity=-0.017 Sum_probs=41.0
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 105 NLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 105 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
.+.+.|+.++.. -..++..+...+..-.|.+++..+.+.+..++..|.-.-+..+.+.|-+.
T Consensus 16 ~L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 16 LCAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 345567665544 33566666666667788889998888877666665555566777777554
No 394
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=71.81 E-value=31 Score=24.04 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 116 SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR-PVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 116 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
...+.++..+...|+++.|.+.|.-+.... ..|. ..|..=+..+.+.+.-....+.++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 446777888888888888888888877652 2232 234444444455444444334444443
No 395
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=71.67 E-value=50 Score=26.37 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
.|+.-|...|++.+|...++++---- .....++-+++.+.-+.|+-+..+.+++..-..
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 45555666666666666655543211 123445556666666666655555555555444
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.57 E-value=68 Score=27.91 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=88.0
Q ss_pred HHhcCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH-----HHH
Q 035645 20 LLNAGYLESAKQMVNKMIKQ----GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI-----PAV 90 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~ 90 (217)
....|+++.|.++.+...+. -..+....+.++..+..-.|++++|..+.....+..-.-+...+.... ..+
T Consensus 468 al~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il 547 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEIL 547 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44578899998888877654 223455667778888888999999999987776543333433332222 234
Q ss_pred HhcCCH--HHHHHHHHHHHhC---CCC---CCcccHHHHHHHHHhcCChHHHHHHH----HHHHhcCCCCCHh--HHHHH
Q 035645 91 SKAGMI--DEAFRLLHNLVED---GHN---PFPSLYAPIIKGAFRRGQFDDAFCFF----SEIKIKGHPPNRP--VYTTL 156 (217)
Q Consensus 91 ~~~~~~--~~a~~~~~~~~~~---~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~--~~~~l 156 (217)
...|+. .+....|+..... ..+ +-..++..++.++.+ ++.+..-. .--......|-.. .+..|
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 455633 2233333333222 111 122345555555555 33322222 2222222222222 22367
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc
Q 035645 157 ITMCGRGGRFVEAANYLMEMTEM 179 (217)
Q Consensus 157 i~~~~~~g~~~~a~~~~~~~~~~ 179 (217)
+......|+.++|...++++...
T Consensus 625 A~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 625 AELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 77888899999999999988753
No 397
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=71.52 E-value=41 Score=25.33 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----------cCCchHH
Q 035645 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN----------CGKHDLA 204 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 204 (217)
.++|+.+...++.|.-..|.-+.-.+.+.-.+.++..+|+.+..- ..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 367777777788888877777777777888888888888877642 1225555555553 5666665
Q ss_pred HHHHH
Q 035645 205 EKIEQ 209 (217)
Q Consensus 205 ~~~~~ 209 (217)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 398
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.38 E-value=42 Score=25.37 Aligned_cols=116 Identities=10% Similarity=0.084 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc---CCCHHHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR---GGRFVEAANYLM 174 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~ 174 (217)
.-+.++++.++.+ +.+......++..+.+..+.++..+-|+++.... +-+...|...|..... .-.++.+..+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3344445544442 2334444555555555555555555555555441 1134445544443322 223444444443
Q ss_pred HHHH------cCC------CCC-----hhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 175 EMTE------MGL------TPI-----SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 175 ~~~~------~~~------~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
+... .+. .++ ..++..+..-+..+|..+.|..++|.+.++.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3321 110 000 1234444455567888888888887776653
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.19 E-value=47 Score=25.86 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHH--hcCchhHHHHHHHHHHhc
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLE--TFNSLIETIC--KSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 74 (217)
...+.+.+++..|.++++.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999987 555554 4455555554 356778899999887654
No 400
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=70.85 E-value=13 Score=22.94 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
.++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355666666666778888888877766666666555566666666544
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.48 E-value=18 Score=23.47 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=42.2
Q ss_pred CCCcccHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 035645 112 NPFPSLYAPIIKGAFRRGQ---FDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEM 179 (217)
Q Consensus 112 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 179 (217)
.++..+--.+..++.+..+ ..+.+.+++++.+...+.. ....--|.-++.+.++++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444455566666554 5566777887776332222 233334555677888899999888888774
No 402
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=70.41 E-value=30 Score=23.33 Aligned_cols=61 Identities=5% Similarity=0.015 Sum_probs=36.4
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 36 MIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 36 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
+...|+.++..=. .++..+...++.-.|.++++.+.+.+...+..|-..-|..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3455665444322 444444445556677777777777766666666666666666666554
No 403
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=69.77 E-value=17 Score=20.11 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=41.2
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKS 58 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 58 (217)
+.|+...++.++..+++..-.+.++..+.+..++|. .+..+|.--++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 457778899999999999999999999999999885 4667776666666553
No 404
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.70 E-value=72 Score=27.39 Aligned_cols=102 Identities=10% Similarity=0.113 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhc
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDP---DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKA 93 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (217)
++-+.+.+.+++|+...+..... .| -...+...+..+...|++++|-...-.|... +..-|.-.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44566778888888887665432 33 3445677788888888888888877777543 444455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (217)
++......+ +....-..+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554432222 1111112344566666666555
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.15 E-value=63 Score=26.75 Aligned_cols=62 Identities=10% Similarity=-0.030 Sum_probs=27.4
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 114 FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 114 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
+...-..++..|.+.|..+.|.++.+.+-..-. ...-|..-+..+.++|+...+..+...+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556677777777777777777776644311 23345566666677777766655555554
No 406
>PRK09462 fur ferric uptake regulator; Provisional
Probab=68.67 E-value=30 Score=22.63 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=34.5
Q ss_pred HhhCCCCCChhhHHHHHHHHHhc-CchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 36 MIKQGSDPDLETFNSLIETICKS-GEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 36 m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+.+.|-+
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44556654433 22334444443 45667777777777766656666665666666666654
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.63 E-value=22 Score=21.09 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHhcCCHHHHHHHHHHHh----hCCCCCC----hhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 035645 20 LLNAGYLESAKQMVNKMI----KQGSDPD----LETFNSLIETICKSGEVEFCVEMYYSVCK 73 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~----~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 73 (217)
..+.|++..|.+.+.+.. ..+..+. ....-.+.......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346677777755555443 2222221 11222344455566777777777766643
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.46 E-value=51 Score=25.20 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=37.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGH-NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
+.-+.-+.|+..+|.+.|+++.+.-. ..-......++.++....-+..+..++.+..+-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44444568999999999998765421 111123456777777777777776666655443
No 409
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=68.39 E-value=20 Score=20.58 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=4.9
Q ss_pred HhcCCHHHHHHH
Q 035645 21 LNAGYLESAKQM 32 (217)
Q Consensus 21 ~~~g~~~~a~~~ 32 (217)
++.|+++-+..+
T Consensus 5 ~~~~~~~~~~~l 16 (89)
T PF12796_consen 5 AQNGNLEILKFL 16 (89)
T ss_dssp HHTTTHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 344444433333
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.84 E-value=43 Score=24.16 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVED-----GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 141 (217)
.-.+..-|.+.|++++|.++|+.+... ...+...+...+..++.+.|+.+....+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 335666677777777777777766421 22344555666667777777777766655444
No 411
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.39 E-value=27 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=8.6
Q ss_pred HHHHHhcCchhHHHHHHHHH
Q 035645 52 IETICKSGEVEFCVEMYYSV 71 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~ 71 (217)
+..|...++.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444555554444443
No 412
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=66.30 E-value=12 Score=23.45 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCch
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV 61 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 61 (217)
.-..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-.
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34567777777777888999999999988888887776667777666643
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.16 E-value=93 Score=27.36 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CC-ChhhHHHHHHHHHhcCch--hHHHHHHHHHHhcCCCcchhhHH-
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGS--DP-DLETFNSLIETICKSGEV--EFCVEMYYSVCKLGSCADVSTYK- 84 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~-~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~- 84 (217)
.-|..|+..|...|+.++|+++|.+.....- .+ -...+..++.-+.+.+.. +..++.-++..+....-....+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 3478899999999999999999999876321 11 112233355555555544 55555555554432111111111
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC--------hHHHHHH-----HHH
Q 035645 85 -----------ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ--------FDDAFCF-----FSE 140 (217)
Q Consensus 85 -----------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--------~~~a~~~-----~~~ 140 (217)
.-+-.|......+-+...++.+...+-.++..-.+.++..|...=+ -+++.+. +..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 1333456667777888888888877656666667777766654221 2233333 111
Q ss_pred HHh--cCCCC--------CHhHHHHHHHHHhcCCCHHHHHHHHHHHHH------------c-CCCCChhhHHHHHHHHHh
Q 035645 141 IKI--KGHPP--------NRPVYTTLITMCGRGGRFVEAANYLMEMTE------------M-GLTPISRCFDLVTDGLKN 197 (217)
Q Consensus 141 ~~~--~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------~-~~~~~~~~~~~l~~~~~~ 197 (217)
+.+ ....| ....|....-.+.+.|+.++|..++-.... . ...++...|..++..|..
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhc
Confidence 111 12222 123333333344588888888888766543 1 123466778888888776
Q ss_pred c
Q 035645 198 C 198 (217)
Q Consensus 198 ~ 198 (217)
.
T Consensus 745 ~ 745 (877)
T KOG2063|consen 745 P 745 (877)
T ss_pred c
Confidence 6
No 414
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=65.92 E-value=43 Score=23.36 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=90.0
Q ss_pred CCCCCChhhHHHHHHHHHhcC----chhHHHHHHHHHHhcCCCcch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 035645 39 QGSDPDLETFNSLIETICKSG----EVEFCVEMYYSVCKLGSCADV----STYKILIPAVSKAGMIDEAFRLLHNLVEDG 110 (217)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (217)
.|..++...++.++..+.+.. +.+-+..+=.+....++.++. ...-.=+..|-+.|+|.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 466677777777777665533 344444444455544444433 233334455667777776666655443221
Q ss_pred CCC---------------------CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 111 HNP---------------------FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 111 ~~~---------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
..+ ....|..+..+-++.-..+++...+- ..+=-+++-.|-+..+|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KG 151 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKG 151 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHH
Confidence 111 11223333333333222222211111 12223455667788889999
Q ss_pred HHHHHHHHHcCC--------------CCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 170 ANYLMEMTEMGL--------------TPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 170 ~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
.++++.|.+..+ .+--...+.....|.++|.+|.|..+++
T Consensus 152 rkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 152 RKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 999988865322 2333567888899999999999999886
No 415
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=65.71 E-value=43 Score=23.36 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQ 39 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 39 (217)
..+.++..+...|+++.|-+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3456666777777777777777776654
No 416
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=65.59 E-value=59 Score=24.90 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhcCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 035645 131 FDDAFCFFSEIKIKGHPPN----RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLK 196 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (217)
.+++..++..+... .|+ ...|-++.......|.++.++.+|++.+..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566666666554 334 35667777777777777777778877777777777776666666655
No 417
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.54 E-value=57 Score=24.65 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHH-HHhCCCCCCcc----cHHHHHHHHHhcCChHHHHHHHHH-HHhcCCCCCHhHHHHHHHHHh
Q 035645 88 PAVSKAGMIDEAFRLLHN-LVEDGHNPFPS----LYAPIIKGAFRRGQFDDAFCFFSE-IKIKGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~ 161 (217)
.-..+...+++.....++ |.+.+ -|+.. +|..++++- .|.+-.++..+ ..+ ...+|..|+.+++
T Consensus 263 ~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~ 332 (412)
T KOG2297|consen 263 EQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFC 332 (412)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHh
Confidence 333444556666555544 44444 45554 455555543 33332222221 111 2457888999999
Q ss_pred cCCCHHHH
Q 035645 162 RGGRFVEA 169 (217)
Q Consensus 162 ~~g~~~~a 169 (217)
..|+.+..
T Consensus 333 s~g~sEL~ 340 (412)
T KOG2297|consen 333 SQGQSELE 340 (412)
T ss_pred cCChHHHH
Confidence 99987654
No 418
>PRK09462 fur ferric uptake regulator; Provisional
Probab=65.53 E-value=35 Score=22.30 Aligned_cols=62 Identities=10% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 104 HNLVEDGHNPFPSLYAPIIKGAFRR-GQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
+.+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..|.---+..+...|-+
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445566665443 34455555554 45677888888888776655655554455666666644
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.01 E-value=27 Score=27.83 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHhcC
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD-VSTYKILIPAVSKAG 94 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 94 (217)
..-+...+.++.|..++.+.++. .||.. .|..-..++.+.+++..|+.=....++.. |+ ...|-.=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 33445566777777777777664 34333 33444466677777777766666665532 32 223333334445555
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
++.+|...|+..... .|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 556666666555443 45554444444433
No 420
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=64.90 E-value=79 Score=26.10 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=107.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
++..+|..-+..-.+.|+++.+.-+|++...- +..=...|--.+.-....|+.+.|..++.+..+.-. |+......+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHH
Confidence 35678888889999999999999999887531 111223444444455555888888888776655422 2332222222
Q ss_pred HHH-HhcCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChHHHH---HHHHHHHhcCCCCCHhHHHHHHHH---
Q 035645 88 PAV-SKAGMIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFRRGQFDDAF---CFFSEIKIKGHPPNRPVYTTLITM--- 159 (217)
Q Consensus 88 ~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~--- 159 (217)
..+ -..|++..|..+++.+.+.- |+ ..+-..-+....+.|+.+.+. .++........ +..+.+.+.--
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHH
Confidence 223 34578999999999887763 33 223333345566777777777 33333322211 22222222222
Q ss_pred --HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 035645 160 --CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG 199 (217)
Q Consensus 160 --~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (217)
+.-.++.+.|..++.++.+.- +++...|..++.-....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 223567788888888777653 455556666666555444
No 421
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=64.04 E-value=58 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=16.0
Q ss_pred CCCcccHHHHHHHHHhcCChHHHH
Q 035645 112 NPFPSLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 112 ~~~~~~~~~ll~~~~~~g~~~~a~ 135 (217)
..|+..|..++.+|.-.|+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 356667777777777777655544
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.96 E-value=70 Score=25.19 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHH--hcC----CC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVC--KLG----SC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~--~~~----~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
...|++.++-.|++..|+++++.+. +.+ ++ -.+.+|--+.-+|.-.+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999988763 111 11 134567778888889999999999998764
No 423
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.73 E-value=60 Score=24.31 Aligned_cols=22 Identities=18% Similarity=-0.108 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 035645 189 DLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
..++..+.+.|++.+|..+..-
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 4677778888888888776543
No 424
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.28 E-value=63 Score=24.43 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh---cCChHHHHHH
Q 035645 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR---RGQFDDAFCF 137 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~ 137 (217)
.+.-+.++++..+.+ +.+......++..+.+..+.++..+-|+++.... +.+...|...|..... .-.++.+..+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345566777766653 2455666777777777777888788888887763 3345566666655444 2345566666
Q ss_pred HHHHHhc------CC----CCCH-------hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 138 FSEIKIK------GH----PPNR-------PVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 138 ~~~~~~~------~~----~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
|.+.... +. .+.. ..+..+...+.++|..+.|..+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6554321 11 1111 2333333445678999999999988887655
No 425
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.59 E-value=30 Score=20.50 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=25.1
Q ss_pred HhcCchhHHHHHHHHHH----hcCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 56 CKSGEVEFCVEMYYSVC----KLGSCAD----VSTYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~----~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
.+.|++..|.+.+.+.. ..+.... ....-.+.......|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45667777655544442 2222211 1122223344555666666666666654
No 426
>PRK09857 putative transposase; Provisional
Probab=62.43 E-value=63 Score=24.13 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 149 (217)
+..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++.++|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666666666554 222333344555666666766778888888888887654
No 427
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.30 E-value=84 Score=25.53 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-hHHHHHHHH
Q 035645 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ-FDDAFCFFS 139 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~ 139 (217)
......+|+..... +..|+..|...+..+.+.+.+.+...+|.+|...+ +.++..|-.........+. ++.|..+|.
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHH
Q ss_pred HHHhcCCCCCHhHHHHHHHH
Q 035645 140 EIKIKGHPPNRPVYTTLITM 159 (217)
Q Consensus 140 ~~~~~~~~~~~~~~~~li~~ 159 (217)
.-... .+.++..|-...+.
T Consensus 165 rgLR~-npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 165 RGLRF-NPDSPKLWKEYFRM 183 (568)
T ss_pred HHhhc-CCCChHHHHHHHHH
No 428
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=62.21 E-value=63 Score=24.05 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCC
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR 165 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 165 (217)
++....+.++..+..+.+..+.. ...-...++.+...|++..|++++.+..+. .. ...-|+++=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHH
Confidence 33444444444444444444432 222344566677788888888888776543 00 11111111111 112
Q ss_pred HHHHHHHHHHHHH-----cCCCCChhhHHHHHHHHHhcCCchHHHH
Q 035645 166 FVEAANYLMEMTE-----MGLTPISRCFDLVTDGLKNCGKHDLAEK 206 (217)
Q Consensus 166 ~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (217)
+++......++.+ .-...|+..|..+..||.-.|+...+.+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 2333333333322 1125677788888888888887665543
No 429
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.07 E-value=69 Score=24.44 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=75.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHH----hcCCCcc
Q 035645 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GSDPDLETFNSLIETICKSGEVEFCVEMYYSVC----KLGSCAD 79 (217)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 79 (217)
.++.|...++++..+ +..++++-.+..++..+. |-.--...+.....-|++-|+.+.|++.+.+.. ..|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 445565666665554 233444444555555443 322234566677788899999999988877654 4466777
Q ss_pred hhhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035645 80 VSTYKILIPAV-SKAGMIDEAFRLLHNLVEDGHNPFP----SLYAPIIKGAFRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 80 ~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 143 (217)
+..+.+-+..+ ....-+.+-++..+.+.+.|-.-+. .+|..+- +....++.+|-.+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 76666544433 3333344555555555555533222 2343332 2345577788787776654
No 430
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=61.32 E-value=25 Score=19.15 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=24.1
Q ss_pred HhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH-----HhcCCHHHHHHH
Q 035645 56 CKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV-----SKAGMIDEAFRL 102 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~ 102 (217)
...|++-+|.++++.+-.....+....+..+|.+. .+.|+.+.|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34567777777777764332223444455555443 334566555544
No 431
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.57 E-value=18 Score=17.18 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCchHHHHHHH--HHhhh
Q 035645 190 LVTDGLKNCGKHDLAEKIEQ--LEVSL 214 (217)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~--~~~~~ 214 (217)
.+.-.+-..|++++|.++++ .+..+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 34555666777777777744 55443
No 432
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.54 E-value=63 Score=23.49 Aligned_cols=119 Identities=9% Similarity=-0.036 Sum_probs=74.1
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChH
Q 035645 55 ICKSGEVEFCVEMYYSVCKLGSCADV-STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS-LYAPIIKGAFRRGQFD 132 (217)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~ 132 (217)
|.....++.|+..|.+.+. +.|+. .-|+.=+.++.+..+++.+..=-...++ +.|+.. ....+-.+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4555678888888877766 45666 4455667777788888877655554444 345544 3333445566677888
Q ss_pred HHHHHHHHHHh----cCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 133 DAFCFFSEIKI----KGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 133 ~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
+|+.++.+... ..+.|-......|..+--..-...+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 88888877633 3344555667777666544444555555555443
No 433
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.70 E-value=55 Score=26.18 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=66.2
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcC
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTY-KILIPAVSKAGMIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFRRG 129 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g 129 (217)
++.+.+.+.++.|+.++.+.++ ..||...| ..--.++.+.+++..|..=+....+.. |+ ...|.-=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 4556677889999999998887 45655444 333477888888888887777777654 32 233333334455555
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66666666665554 467776666666554
No 434
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.96 E-value=40 Score=20.78 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555556666666666666655554
No 435
>PRK12798 chemotaxis protein; Reviewed
Probab=58.42 E-value=91 Score=24.65 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=74.2
Q ss_pred cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH-hcCCHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChHHH
Q 035645 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS-KAGMIDEAFRLLHNLVED--GHNPFPSLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a 134 (217)
.|+.+++.+.+..+.....++....|-.|+.+-. ...+..+|+++|++..-. |.-.......--+......|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 4667777777766655545555666666555533 345677777777765432 2111222333444455666776665
Q ss_pred HHHHHHHHhc-CCCCCHhHH-HHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 135 FCFFSEIKIK-GHPPNRPVY-TTLITMCGRGGRFVEAANYLMEMTE-MGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
..+-...... ...|-..-| ..+..++.+.++-..-. -+..+.. ....--...|-.+...-.-.|+.+.|.-.-++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~-~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDA-RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHH-HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 5554443322 222322222 22222333322211111 1222221 111112346666666666667766666555554
Q ss_pred hhh
Q 035645 212 VSL 214 (217)
Q Consensus 212 ~~~ 214 (217)
..+
T Consensus 284 ~~L 286 (421)
T PRK12798 284 LKL 286 (421)
T ss_pred HHh
Confidence 443
No 436
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=58.28 E-value=71 Score=23.39 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC-CCC-----ChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEMG-LTP-----ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.++..|.+.|+.+.|..++--+...+ ... +...-..|+......++|+.+.++.+.+..+++
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~ 251 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDP 251 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 55666677777777777776665433 122 233445667777788889999888888877653
No 437
>PRK09857 putative transposase; Provisional
Probab=57.86 E-value=77 Score=23.68 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 035645 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI 184 (217)
Q Consensus 118 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 184 (217)
+..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445666656777777777777777655 333344455666777777877888999999999887655
No 438
>PRK09687 putative lyase; Provisional
Probab=57.84 E-value=75 Score=23.53 Aligned_cols=120 Identities=15% Similarity=0.042 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 035645 79 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG-QFDDAFCFFSEIKIKGHPPNRPVYTTLI 157 (217)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 157 (217)
+..+-...+.++++.++ +++...+-.+.+. ++..+-...+.++++.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444555555554 3344444444432 23334444444455442 13344444444442 23556666667
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
.++.+.|+. .+...+-...+.+. .....+.++...|.. +|...+..+.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 777777763 45545444444321 234677777777775 4555554444
No 439
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.37 E-value=1.6e+02 Score=27.10 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=90.2
Q ss_pred hcCchhHHHH------HHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCcccHHHHHH
Q 035645 57 KSGEVEFCVE------MYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-------EDGHNPFPSLYAPIIK 123 (217)
Q Consensus 57 ~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~ 123 (217)
..|.+.++.+ ++...-..-.++....|..+-..+.+.++.++|...-+... ..+..-+...|..+..
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3445555554 44433222223345667777788888888888877654321 1222223445666666
Q ss_pred HHHhcCChHHHHHHHHHHHhc-----C--CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC--CCChhhHH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIK-----G--HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM-----GL--TPISRCFD 189 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 189 (217)
.+....+...|...+...... | .+|...+++.+-..+...++++.|.++.+...+. |. ..+..+|.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 666666777777776665432 2 2344455555555555568888888888877642 11 23455677
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 035645 190 LVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~ 209 (217)
.+.+.+...+++..|....+
T Consensus 1104 ~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHHh
Confidence 77777777777777665543
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.34 E-value=94 Score=24.53 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhc--CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKL--GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
.+.-+...|..+|+++.|++.|.+.... .....+..|-.+|..-...|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4556666777777777777777775331 0112234455566666666777666665555543
No 441
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.31 E-value=17 Score=15.81 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=7.3
Q ss_pred ChHHHHHHHHHHHhc
Q 035645 130 QFDDAFCFFSEIKIK 144 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~ 144 (217)
+.+.|..+|+.+...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344555555555443
No 442
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.91 E-value=79 Score=23.49 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC---CC--CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-----CCCcchhh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQ---GS--DPDLETFNSLIETICKSGEVEFCVEMYYSVCKL-----GSCADVST 82 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 82 (217)
.-.++....+.|++++....+.++..- .+ ..+..+.|+++..-+...+.+...++|+.-.+. +-+.--.|
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 445677888889999888888877531 11 235566778887777666666655555433211 11222344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CC-------cccHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHN----PF-------PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-GHPPNR 150 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 150 (217)
-..|...|...+++.+..++++++..+-.. .| ...|..=|+.|....+-.+...+|+....- ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 556777888888888888888887643111 11 245777777888888877777888765432 223444
Q ss_pred hHHHHHHHHH-----hcCCCHHHHH
Q 035645 151 PVYTTLITMC-----GRGGRFVEAA 170 (217)
Q Consensus 151 ~~~~~li~~~-----~~~g~~~~a~ 170 (217)
.... .|.-| .+.|++++|-
T Consensus 228 lImG-vIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHH
Confidence 3332 23333 3566676654
No 443
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=56.82 E-value=49 Score=21.13 Aligned_cols=111 Identities=12% Similarity=0.160 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH----HHHHHHh-------c
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI----LIPAVSK-------A 93 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~-------~ 93 (217)
++.-|.+++.++...+ -+...++.+.+..-.-.+.++..++....-.|.. ..+. .+..|-. .
T Consensus 4 Np~IA~~~l~~l~~s~------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~e-fl~~yI~~cI~~ce~~kd~~~q~ 76 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQE-FLHMYISNCIKSCESIKDKYMQN 76 (126)
T ss_pred cHHHHHHHHHHHcCCc------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHH-HHHHHHHHHHHHHHhhccccccc
Confidence 4555566655554332 1555566666666666666666666554433332 2222 2333322 1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
....-.-.+++.+.+.++......+..+=..|.+-.+..+|-.+|+.++
T Consensus 77 R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 77 RLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred chhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 2223344556667777766555666666667777778888888887654
No 444
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.72 E-value=97 Score=24.47 Aligned_cols=174 Identities=13% Similarity=0.031 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC---------CCcc
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ--GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---------SCAD 79 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~~ 79 (217)
..+.-+.+.|..+|+++.|++.|-+.+.- ..+-....|-.+|..-.-.|+|......-.+..+.- +++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45788889999999999999999996542 112244566677777778888888877777665431 2222
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C----CCCCcccHHHHHHHHHhcCChHHHHHH-----HHHHHhcCCCC
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVED--G----HNPFPSLYAPIIKGAFRRGQFDDAFCF-----FSEIKIKGHPP 148 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~----~~~~~~~~~~ll~~~~~~g~~~~a~~~-----~~~~~~~~~~~ 148 (217)
...+..+...+. ++++.|.+.|-..... + +.|...+....+.+.+--++-+--..+ |+...+.
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 333333433333 3666666555433211 1 122222222233343333332222222 2222222
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCChhhHHHHH
Q 035645 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTE-----MGLTPISRCFDLVT 192 (217)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 192 (217)
.+..+..+.+-| .+++..+.++++++.. .-+.|.+.+.-.+|
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 334455554444 4678888888887753 23345554443333
No 445
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.20 E-value=44 Score=20.40 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 035645 131 FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD 189 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (217)
.....+-+++....+....+-.-..|--.|++.|+.+.|.+-|+.=.. +-|.+.+|-
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
Confidence 344455566665554433334445566678888998888888875333 456655554
No 446
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=56.07 E-value=48 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcC
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLG 75 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~ 75 (217)
++.+.++...++|+++.+.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444455555666666666665554
No 447
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=55.97 E-value=22 Score=20.12 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK 57 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 57 (217)
-.|+.+.+.+++++....|..|.......+..+..+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345666666666666655555555544444444433
No 448
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.28 E-value=1.3e+02 Score=25.31 Aligned_cols=136 Identities=10% Similarity=-0.052 Sum_probs=70.7
Q ss_pred CChhhHHHHHHHHHhcC--chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 035645 43 PDLETFNSLIETICKSG--EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP 120 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (217)
|+..+..+++.-....- ..+-+-.++..|. ....|-....|......--.|+...|...+.........-.......
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 45555554443332211 1223333333333 22334444444333333345777777777666554322222334455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
+.+...+.|..-.|-.++....... ...+-++-.+..++....+++.|++.|++..+..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 6666666666666766666655443 2234556666677777777777777777766543
No 449
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=55.15 E-value=38 Score=19.85 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 164 GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
+..+.+.+++..-.+.. ....|...|+.++.+.|.-+-|+++|
T Consensus 44 ~~~eq~~~mL~~W~~r~--g~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 44 DIKMQAKQLLVAWQDRE--GSQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred CHHHHHHHHHHHHHHhc--CccccHHHHHHHHHHcCcHHHHHhhC
Confidence 33566677776666543 24467888888888888888777764
No 450
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.91 E-value=76 Score=22.70 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc---chhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 035645 41 SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA---DVSTY--KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP 115 (217)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (217)
+.+...-.|.|+--|.-...+.+|-..|..- .|+.| |..++ ..-|....+.|++++|++..+++...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 4455566666665555555566666666433 34444 33333 35667778999999999999887644333333
Q ss_pred ccHHHHH----HHHHhcCChHHHHHHHHHH
Q 035645 116 SLYAPII----KGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 116 ~~~~~ll----~~~~~~g~~~~a~~~~~~~ 141 (217)
..+-.+. -=..+.|..++|+++.+.-
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222222 2245777788888877653
No 451
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.69 E-value=13 Score=28.17 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=53.0
Q ss_pred hcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHH
Q 035645 57 KSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP-SLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~ 135 (217)
..|.++.|++.|...+..+ ++....|..-.+++.+..++..|++=++...+.+ ||. .-|-.--.+....|+|++|-
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4566777777777766643 2344555556666777777777776666665543 332 22322223334567777777
Q ss_pred HHHHHHHhcCCCCC
Q 035645 136 CFFSEIKIKGHPPN 149 (217)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (217)
..++...+.++.+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77777776655443
No 452
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.52 E-value=91 Score=23.46 Aligned_cols=132 Identities=18% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHh----cCCCcchh
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK----LGSCADVS 81 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 81 (217)
+-|...+|+++.- +..++++--+-+++..+ .|-.-....+..+...|++-++.+.+.+...+..+ -|.+.|+.
T Consensus 78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~ 155 (412)
T COG5187 78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF 155 (412)
T ss_pred ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence 3444455555542 11223333233344333 23444567788899999999999998888776643 35555554
Q ss_pred hHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 82 TYKI-LIPAVSKAGMIDEAFRLLHNLVEDGHNPFP----SLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 82 ~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
...+ +.-.|....-.++.++..+.|.+.|-.-+. .+|.-+. +....++.+|-.++.+..
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 3332 223344444467777888888877644322 2332221 123345666666666554
No 453
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=54.39 E-value=48 Score=20.25 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--chhHHHHHHHHHHhcCCC
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG--EVEFCVEMYYSVCKLGSC 77 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 77 (217)
...++..|...|+.++|..-+.++... .--......++..+...+ .-+.+..++..+.+.+.-
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 345677788889999999999886322 112233344444444442 233455555666554443
No 454
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.09 E-value=52 Score=20.58 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
++..+-++...++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4444444555555555555555444
No 455
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=84 Score=22.89 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=79.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh-HHHHHHHHHhcCC
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDL-ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST-YKILIPAVSKAGM 95 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~ 95 (217)
..|....+++.|..-|.+.+. +.|+. .-|+.-+.++.+..+++.+..=-.+..+ +.||..- ...+..++.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 345556678888887766665 45666 4456778888889999988776666655 5566544 3445566677888
Q ss_pred HHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 035645 96 IDEAFRLLHNLVE----DGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 96 ~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 141 (217)
+++|+..+.+..+ ..+.+-......|..+--+.-...+..++..+.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999888743 334444455666666555555555666666554
No 456
>PHA02798 ankyrin-like protein; Provisional
Probab=53.75 E-value=1.2e+02 Score=24.53 Aligned_cols=116 Identities=11% Similarity=0.144 Sum_probs=52.5
Q ss_pred HHHHHHhhCCCCCChh---hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHHhcCCHHHHHHHHHH
Q 035645 31 QMVNKMIKQGSDPDLE---TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 31 ~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~ 105 (217)
++++.+.+.|..++.. -.+.|..++.....+....++.+.+.+.|..++... -.+.+...+..+.. .-.++++.
T Consensus 52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~~ 130 (489)
T PHA02798 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILLF 130 (489)
T ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHHH
Confidence 4555556667665431 112222221111123334677777777777665422 22333333333322 22355666
Q ss_pred HHhCCCCCCcc---cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 035645 106 LVEDGHNPFPS---LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 106 ~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 149 (217)
+.+.|..++.. -++ .+..+.+.|.. .-.++.+.+.+.|..++
T Consensus 131 Ll~~Gadvn~~d~~g~t-pL~~a~~~~~~-~~~~vv~~Ll~~gadin 175 (489)
T PHA02798 131 MIENGADTTLLDKDGFT-MLQVYLQSNHH-IDIEIIKLLLEKGVDIN 175 (489)
T ss_pred HHHcCCCccccCCCCCc-HHHHHHHcCCc-chHHHHHHHHHhCCCcc
Confidence 66666555432 223 34445555541 11234444555665544
No 457
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=53.21 E-value=36 Score=19.28 Aligned_cols=42 Identities=29% Similarity=0.364 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 166 FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
.+.+.+++...... .....|...|+.++.+.|..+-|..+-+
T Consensus 40 ~~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~~ 81 (83)
T PF00531_consen 40 REQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIEQ 81 (83)
T ss_dssp HHHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHHh
Confidence 35566666666554 3445567788888888888887777654
No 458
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=53.05 E-value=1.9e+02 Score=26.67 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=96.9
Q ss_pred HHHHhcCCHHHHHH------HHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH-------HhcCCCcchhhHH
Q 035645 18 QGLLNAGYLESAKQ------MVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSV-------CKLGSCADVSTYK 84 (217)
Q Consensus 18 ~~~~~~g~~~~a~~------~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~ 84 (217)
+.....|.+..+.+ ++...-..-.++....|..+...+.+.++.++|+..-.+. ......-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34555667776666 5553222223445667888888999999999998875443 1111222345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC--CCCH
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVED-------GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-----GH--PPNR 150 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~ 150 (217)
.+.......+....|...+.+.+.. ..+|...+++.+-..+...+.++.|.++.+..... |. -++.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666667777777777765532 22334444555555555668888999888887543 21 2345
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHH
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLM 174 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~ 174 (217)
.++..+...+...+++..|....+
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
Confidence 677777777777777766554443
No 459
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.03 E-value=25 Score=26.79 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=75.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-hHHHHHHHHHhcCCCHHHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR-PVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~ 170 (217)
..|.++.|++.|-..++.+ ++....|..-.+++.+.+.+..|++=+...... .||. .-|-.--.+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4577888888888877765 455666667777888888888888877776654 3442 22222223344578999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 171 NYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
+.+....+.++.+.. =..+-...-+.+..++-.+..++.
T Consensus 203 ~dl~~a~kld~dE~~--~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN--SATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHhccccHHH--HHHHHHhccchhhhhhchhHHHHH
Confidence 999888887654433 344555555566655555554443
No 460
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.86 E-value=24 Score=16.35 Aligned_cols=22 Identities=9% Similarity=0.469 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHH
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFN 49 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~ 49 (217)
++.|..+|++.+.. .|++.+|.
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45566666665543 34544443
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.80 E-value=58 Score=28.89 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcC--chhHHHHHHHHHHhcCCC-------------cchhhHHHHHHHH----------HhcCCHHHHHH
Q 035645 47 TFNSLIETICKSG--EVEFCVEMYYSVCKLGSC-------------ADVSTYKILIPAV----------SKAGMIDEAFR 101 (217)
Q Consensus 47 ~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~-------------~~~~~~~~ll~~~----------~~~~~~~~a~~ 101 (217)
-...++.+|++.+ ++++|+....++.+.+.. +-...|+..+..| ..+.++.|=+-
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLP 893 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLP 893 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHH
Confidence 3445666666666 666666666666533111 0112233322222 33456666666
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 035645 102 LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSE 140 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 140 (217)
+++++.+. +++..-|. .=...+++++|+.-+.+
T Consensus 894 fL~~L~~l--~~~~rry~----ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 894 FLQELQKL--PPLYRRYK----IDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHhC--Chhheeee----HhhhhCCHHHHHHHHHh
Confidence 66666543 22222221 11346778888876654
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.68 E-value=1.6e+02 Score=25.65 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=97.6
Q ss_pred HHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch----------hhHHHHHHHHHhcCC
Q 035645 29 AKQMVNKMIKQGSDP---DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV----------STYKILIPAVSKAGM 95 (217)
Q Consensus 29 a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~ll~~~~~~~~ 95 (217)
-...+.+|+.+--.| ...+...++-.|....+++..+++.+.+++. ||. ..|...++---+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 344667777653344 3456677777888889999999999998774 321 234444544455678
Q ss_pred HHHHHHHHHHHHhCC--CCCCcccH-----HHH--HHHHHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhcC
Q 035645 96 IDEAFRLLHNLVEDG--HNPFPSLY-----API--IKGAFRRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITMCGRG 163 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~--~~~~~~~~-----~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 163 (217)
-++|+...-.+.+.. +.||.... --+ -+.|...+..+.|...|++.-+. .|+. ..+..|+.+-.+
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~- 335 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGE- 335 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhh-
Confidence 888888877776553 34554322 111 12234455677788888876543 4443 223333333222
Q ss_pred CCHHHHHH------HHHHHH-HcCCCCChhhHH---HHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 164 GRFVEAAN------YLMEMT-EMGLTPISRCFD---LVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 164 g~~~~a~~------~~~~~~-~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.++...+ .+..+. ++|..-...-|. ..+.+-.-++++.+|.+..+.|.++++
T Consensus 336 -~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 336 -HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred -hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 1221111 111222 122111111111 223344456778888888777777764
No 463
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.10 E-value=1.1e+02 Score=23.71 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=39.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 035645 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG-RGGRFVEAANYLMEMTE 178 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 178 (217)
+..+.+.|.+..|.++-+-+......-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4566777888888888887777655446666666677665 66777777777766544
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.72 E-value=88 Score=22.50 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCchhHHHHHHHHHHh
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK-SGEVEFCVEMYYSVCK 73 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 73 (217)
.-++..+-+.|+++++...++++...+...+..--+.+-.+|-. .|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 45677788999999999999999998877777776666666632 4556667777766643
No 465
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.41 E-value=55 Score=20.02 Aligned_cols=41 Identities=12% Similarity=0.001 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 035645 65 VEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (217)
.+-+++....+....+.....|...|++.|+.+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444444333322222333444455666666666655554
No 466
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=50.84 E-value=43 Score=21.87 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
.|...++. +.+.|-..+...++++|.+.|+..+...|+..+.-.
T Consensus 111 GtlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 111 GTLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred ehhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34444444 445577888888999999889988888888777654
No 467
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.61 E-value=1.1e+02 Score=23.39 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=9.8
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 035645 120 PIIKGAFRRGQFDDAFCFFSE 140 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~ 140 (217)
.....|++.|+.+.|.+.++.
T Consensus 109 ~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 333445555555555444443
No 468
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.54 E-value=1.4e+02 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
.++.-|.+.+++++|..++..|-
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45556666666666666666553
No 469
>PRK14700 recombination factor protein RarA; Provisional
Probab=50.25 E-value=1.1e+02 Score=23.06 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHHHHHHHHh---cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCC
Q 035645 48 FNSLIETICK---SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI-----DEAFRLLHNLVEDGH 111 (217)
Q Consensus 48 ~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~ 111 (217)
+-.+++++.+ -.+.+.|+-.+-+|.+.|-.|....-..++-++-.-|.- ..|...++.....|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344555543 456777777777777777666666666666666555532 344555555555553
No 470
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.24 E-value=1.1e+02 Score=23.08 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNL 106 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (217)
.++..+...|++.++.+.+.++.++.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44445555555555555555554443
No 471
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.10 E-value=76 Score=25.17 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC------
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG------ 163 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 163 (217)
+...|++.+|...|+.++ +...+.......+.+++.+++....+. +...-+..-.+.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrEY-------ilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICREY-------ILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHCTS-TTTH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccccch
Q ss_pred CCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 164 GRFVEAANYLMEMTEMGLTPISR--CFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+.....++-..+..-.+.|.+. +...-+..+.+.+++..|-.+.+++.++.|
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
No 472
>PRK10941 hypothetical protein; Provisional
Probab=49.14 E-value=1.1e+02 Score=22.68 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHH
Q 035645 118 YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG-LTPISRCFDLVTDGLK 196 (217)
Q Consensus 118 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 196 (217)
.+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 4556678888999999999998888762 2345556666667888899998888888877543 2455666666666655
Q ss_pred hc
Q 035645 197 NC 198 (217)
Q Consensus 197 ~~ 198 (217)
..
T Consensus 263 ~~ 264 (269)
T PRK10941 263 QK 264 (269)
T ss_pred hc
Confidence 43
No 473
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.74 E-value=91 Score=21.77 Aligned_cols=18 Identities=28% Similarity=0.587 Sum_probs=13.2
Q ss_pred HhcCChHHHHHHHHHHHh
Q 035645 126 FRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~~ 143 (217)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 466778888888777754
No 474
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=48.72 E-value=33 Score=23.82 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMY 68 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 68 (217)
.....++..|...|+.+...++.-.+ .|+.--.+.++..|.+.|-++.-+-+|
T Consensus 23 ~v~k~lv~~y~~~~~~~~lE~lI~~L-----D~~~LDidq~i~lC~~~~LydalIYv~ 75 (196)
T PF12816_consen 23 EVFKALVEHYASKGRLERLEQLILHL-----DPSSLDIDQVIKLCKKHGLYDALIYVW 75 (196)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhC-----CHHhcCHHHHHHHHHHCCCCCeeeeee
Confidence 44445555555555555544444443 122222334444444444444433333
No 475
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.57 E-value=1.6e+02 Score=24.46 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 75 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 75 (217)
..|+.++..+.. =+.+.-.++++++.. . + ...+..++++....|......-+.+.+....
T Consensus 311 ~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 311 AKFLRLVRLLRT-LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 345555554433 335555555555543 1 1 4566677777777776555555555554433
No 476
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=48.48 E-value=36 Score=17.19 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=11.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNK 35 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 35 (217)
.|.+...+..+...+...+....+..++++
T Consensus 11 FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~ 40 (46)
T PF06855_consen 11 FPKQETDFDEISSYLESNYDYLESMEIFDR 40 (46)
T ss_dssp S-TT-SSHHHHHHHHHCHCCHHCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCchhHHHHHHH
Confidence 334444444444444444444334443333
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.31 E-value=70 Score=20.34 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=5.8
Q ss_pred HHHHhcCChHHHHHHH
Q 035645 123 KGAFRRGQFDDAFCFF 138 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~ 138 (217)
..+...|++++|.++|
T Consensus 107 ~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHTT-HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3333334444443333
No 478
>PRK10941 hypothetical protein; Provisional
Probab=48.12 E-value=1.1e+02 Score=22.59 Aligned_cols=61 Identities=10% Similarity=-0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
..+.+-.+|.+.++++.|.++.+.+.... |+ +.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44566677888999999999998888754 43 334455555677888888887766665543
No 479
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.04 E-value=71 Score=20.32 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 035645 62 EFCVEMYYSVCKLGSCAD-VSTYKILIPAVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (217)
+.+.++|..|...|+... ...|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 389999999988777654 46688888889999999999999975
No 480
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=48.01 E-value=59 Score=21.27 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
..|...++ .+.+.|-+.+...++++|.+.|+..+...|+.+++-.
T Consensus 110 ~GtlGvL~-~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 110 TGTLGVLA-LAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred eehhHHHH-HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34444444 4456778888999999999999999999998877654
No 481
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=47.69 E-value=55 Score=18.96 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=15.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 035645 117 LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148 (217)
Q Consensus 117 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 148 (217)
....++..+.. ++++++...+.++...|+++
T Consensus 7 ~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~ 37 (89)
T PF08542_consen 7 VIEEILESCLN-GDFKEARKKLYELLVEGYSA 37 (89)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH
Confidence 33444444433 36666666666666555543
No 482
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.51 E-value=1.9e+02 Score=25.11 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=45.0
Q ss_pred HHHHhcCchhHHHHHHHHHHhcCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 53 ETICKSGEVEFCVEMYYSVCKLGSCA---DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
+-+.+.+.+++|+++-+.... ..| -.......+..+.-.|++++|-...-.|... +...|---+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 334445555555555444322 222 2234445555555556666655555555432 2333444444444444
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 162 (217)
+......++ .......+...|..++..+..
T Consensus 438 ~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 433222211 111111344566666666655
No 483
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.65 E-value=1.1e+02 Score=22.28 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC------------CcchhhHHHHH
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS------------CADVSTYKILI 87 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~ll 87 (217)
|.+..+..--.++.+-....+++.+......++ +...|+..+|+..++.-...-- .|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH--HHHHHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF--CFFSEI 141 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~--~~~~~~ 141 (217)
..|.+.+ +++|.+++.++.+.|..| ....+.+.+.+-... ..+-. +++++.
T Consensus 247 ~~~~~~~-~~~A~~il~~lw~lgysp-~Dii~~~FRv~K~~~-~~E~~rlE~ikei 299 (333)
T KOG0991|consen 247 QACLKRN-IDEALKILAELWKLGYSP-EDIITTLFRVVKNMD-VAESLRLEFIKEI 299 (333)
T ss_pred HHHHhcc-HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhcc-HHHHHHHHHHHHH
No 484
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.55 E-value=1.2e+02 Score=22.36 Aligned_cols=151 Identities=12% Similarity=0.011 Sum_probs=77.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh----c
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK----A 93 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 93 (217)
..+++..+...+......+.. .....+...|.. ..+..+|.+.|...-+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 456666666666666553322 333333333332 3456667777776655443 2223334444443 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-----C--ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh----c
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR-----G--QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG----R 162 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~ 162 (217)
.+..+|..+|++.-+.|..+...+...+-..|..- - +...|...|......+ +......+...|. -
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 36677777777777776433211122232333221 1 2236777777776665 3333334433332 2
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 035645 163 GGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~ 181 (217)
..+.++|...|...-+.|-
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 3466777777777766664
No 485
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=46.49 E-value=1.1e+02 Score=22.03 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHN 112 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (217)
+..++-.+...|+++.|+++.+...+.|.+
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 334444556667777777777777777644
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.41 E-value=1.3e+02 Score=23.10 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 035645 96 IDEAFRLLHNLVEDGHNPFP----SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 161 (217)
.+++..+++.+.+. -|+. .-|..+++.....|.++.++.+|++....|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777654 3443 3467777888888999999999999998888887666666666554
No 487
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.30 E-value=1.5e+02 Score=23.62 Aligned_cols=182 Identities=8% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc--CCCcchhhHHHHHHHHH
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL--GSCADVSTYKILIPAVS 91 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~ 91 (217)
+..+.++...++.+..-..|-...-. ......+.--|++...-.|++....+..+.+.+. |..|...+--.+.-+|.
T Consensus 205 ~~ql~~~~s~~dp~~va~~~g~s~~y-~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayL 283 (525)
T KOG3677|consen 205 SIQLTASVSNKDPALVALIFGASQPY-ANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYL 283 (525)
T ss_pred HHHHHHHhcCCChhhhhhhhccccHH-HhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHH
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh-------cC
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG-QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG-------RG 163 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~ 163 (217)
-.+++.+|.+.|-..+.. +.-+...+...--.+...+ .+|....++......-..--..++...+.-++ +.
T Consensus 284 mmrryadai~~F~niLly-Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml~mqn 362 (525)
T KOG3677|consen 284 MMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKMLPMQN 362 (525)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhhhhhc
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 035645 164 GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN 197 (217)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (217)
|+.+.-..+|.-....-+.|....|..+..-|.+
T Consensus 363 g~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~k 396 (525)
T KOG3677|consen 363 GDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHK 396 (525)
T ss_pred CChHHHHHHHHHcCccccCCCCcccccccccccc
No 488
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=46.25 E-value=77 Score=20.27 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 167 VEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
.-.-.++..+.+.++.-....+..+-.-|.+-.+..+|..+|+.++
T Consensus 80 Rlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 80 RLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred hhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHh
Confidence 3344455566666665555556666666667777888888887765
No 489
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.19 E-value=1.7e+02 Score=24.16 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
...++.-|.+.+++++|+.++..|.=.... ---...+.+++.+.+..--++.+..++.....
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 345777888888888888888877422111 01233444555555555445555555555544
No 490
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.12 E-value=2e+02 Score=24.94 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=9.3
Q ss_pred HHHHhcCchhHHHHHH
Q 035645 53 ETICKSGEVEFCVEMY 68 (217)
Q Consensus 53 ~~~~~~~~~~~a~~~~ 68 (217)
..|.-.|++++|++.-
T Consensus 67 KVyy~Lgeye~Al~yA 82 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYA 82 (929)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555566666666553
No 491
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.77 E-value=2.1e+02 Score=25.19 Aligned_cols=169 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
..|...|++++|+++-..-... -..++..-...|.+.+++..|-++|-++ ...|..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~----le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDA----LETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH---------------------HhcCChHHHHHHHHHHHhcCCCCCHhHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKGA---------------------FRRGQFDDAFCFFSEIKIKGHPPNRPVYTTL 156 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~---------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (217)
+++.|-.=+-.+++|...+=..++... ......+...+-|...... .-+.....+.
T Consensus 434 -~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~--~~~~~nretv 510 (911)
T KOG2034|consen 434 -ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVL--HKDELNRETV 510 (911)
T ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHh--hHHhhhHHHH
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 157 ITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 157 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
.+.+...|+.+.+..+-.-+.+ |..++.-+.+.+.+++|.+++..
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.56 E-value=1.1e+02 Score=21.84 Aligned_cols=119 Identities=12% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...|..+++++....+ ..-.+.++.+.+-.+.|+-... ++.++...|+.+.|+.+++.... ...+...-..++..
T Consensus 76 p~~~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA 150 (226)
T ss_pred CHHHHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH----hcCChHHHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF----RRGQFDDAFCF 137 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~ 137 (217)
..++.+.+|+.+-+...+ ......+..++..+. +.+..++...+
T Consensus 151 -La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred -HHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 493
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.46 E-value=1.1e+02 Score=21.69 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCCCCh-----h
Q 035645 125 AFRRGQFDDAFCFFSEIKIK----GHPPN--RPVYTTLITMCGRGGR-------FVEAANYLMEMTEMGLTPIS-----R 186 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~-----~ 186 (217)
+.....+++|.+.|....-. +.+|. ...+--+.-.|-..|+ ...|.+.|.+..+..-.|.. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhhcCC
Q 035645 187 CFDLVTDGLKNCGKHDLAEKIEQLEVSLRSV 217 (217)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~v 217 (217)
..-.+.....+.|+.++|.+.|..+......
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
No 494
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.09 E-value=1.8e+02 Score=24.25 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 035645 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCG-RGGRFVEAANYLMEMT 177 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~ 177 (217)
+..+.+.|.|..|.++-+.+.+....-|+.....+|+.|+ ++.+++-.+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445677788888887777776655446666667777665 5667777777776664
No 495
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=44.78 E-value=95 Score=21.21 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHhhCC----CCCCh---hhHHHHHHHHHhcCchhHHHHHHHHHHh-cCCCcchhhHHHHHHHHHhcCCH
Q 035645 25 YLESAKQMVNKMIKQG----SDPDL---ETFNSLIETICKSGEVEFCVEMYYSVCK-LGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
+-+.|..++..+.+.. ..++. ......+..+.+..+ -++++.+.+ .|+.|...++.-++..+.+.-..
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYD----PDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 5677888887776532 23332 222233333333332 355666764 78888888888888899988889
Q ss_pred HHHHHHHHHHHhCC
Q 035645 97 DEAFRLLHNLVEDG 110 (217)
Q Consensus 97 ~~a~~~~~~~~~~~ 110 (217)
+.+.++|+.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988766
No 496
>PRK10292 hypothetical protein; Provisional
Probab=44.62 E-value=24 Score=19.27 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=26.0
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHH
Q 035645 31 QMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSV 71 (217)
Q Consensus 31 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 71 (217)
++.-.|...|.+|.......+++.-..+++.+......+.|
T Consensus 20 dvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 20 KVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred HHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 34456788888998888888886665555544333333333
No 497
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.59 E-value=2.6e+02 Score=25.82 Aligned_cols=165 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhc-----------------------CCCcchhh-----HHHHHHHHHhcCCHHHHHH
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKL-----------------------GSCADVST-----YKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~-----~~~ll~~~~~~~~~~~a~~ 101 (217)
.+..+|...|+..+|++.|.+.... |-.|+..- |...+..+-+.+..+++.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHHhC---CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH------------
Q 035645 102 LLHNLVED---GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF------------ 166 (217)
Q Consensus 102 ~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~------------ 166 (217)
+-....+. .-+.-..+++.+.+.....|.+-+|...+-..... ..-......++..++..|.+
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchH
Q ss_pred HHHHH-HHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHH-HHHHhhhcC
Q 035645 167 VEAAN-YLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI-EQLEVSLRS 216 (217)
Q Consensus 167 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~ 216 (217)
++... +++..-.....-...-|..|-.-+.+.+++.+|-.+ ++....+++
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
No 498
>PHA02798 ankyrin-like protein; Provisional
Probab=44.33 E-value=1.6e+02 Score=23.84 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHHhcCCHHHHHHHH
Q 035645 28 SAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVSKAGMIDEAFRLL 103 (217)
Q Consensus 28 ~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~ 103 (217)
...++.+.+.+.|..++... -.+.+...+..+.. .-.++.+.+.+.|..++... -.+.+..+.+.+.. .-.++.
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~-~~~~vv 164 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHH-IDIEII 164 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCc-chHHHH
Confidence 34677777788887665432 11223333333322 23455566666776654321 22344455555541 122344
Q ss_pred HHHHhCCCCCC
Q 035645 104 HNLVEDGHNPF 114 (217)
Q Consensus 104 ~~~~~~~~~~~ 114 (217)
+.+.+.|..++
T Consensus 165 ~~Ll~~gadin 175 (489)
T PHA02798 165 KLLLEKGVDIN 175 (489)
T ss_pred HHHHHhCCCcc
Confidence 55555665543
No 499
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=44.07 E-value=1.2e+02 Score=27.07 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=30.4
Q ss_pred hcCchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 035645 57 KSGEVEFCVEMYYSVCKLGSCADV-STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP 113 (217)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (217)
....+.++.++|..|.+.|+.... ..|-.....+.+.+.+++|..+|+.-.+..-.|
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP 147 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP 147 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 344455666666666655555443 234444455555556666666666555443333
No 500
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.95 E-value=1.1e+02 Score=21.56 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHhh----CCCCCC--hhhHHHHHHHHHhcCc-------hhHHHHHHHHHHhcCCCcch-----h
Q 035645 20 LLNAGYLESAKQMVNKMIK----QGSDPD--LETFNSLIETICKSGE-------VEFCVEMYYSVCKLGSCADV-----S 81 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-----~ 81 (217)
+.....++.|.+.+.-..- .+.+|. ...+.-+.-.|...|+ ...|.+.|.+.....-.|.. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
..-.+.....+.|+.++|.+.|.++...+-.........+.+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Done!