Query 035645
Match_columns 217
No_of_seqs 380 out of 1090
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 07:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.7E-41 1.3E-45 259.8 23.3 197 2-198 17-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.8E-37 6.2E-42 239.3 20.9 188 27-214 7-204 (501)
3 2xpi_A Anaphase-promoting comp 99.9 3.4E-23 1.2E-27 163.5 25.0 205 8-216 371-581 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.9E-22 6.4E-27 159.3 25.5 207 7-216 302-547 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 3.3E-24 1.1E-28 172.3 11.2 163 45-212 127-308 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.9 2.7E-24 9.2E-29 172.7 9.8 150 10-164 127-286 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.9 1.5E-18 5.3E-23 130.3 25.9 202 10-216 169-370 (388)
8 2pl2_A Hypothetical conserved 99.8 8.7E-19 3E-23 121.7 20.6 201 6-212 1-212 (217)
9 1w3b_A UDP-N-acetylglucosamine 99.8 8.7E-18 3E-22 126.2 24.3 199 13-216 138-336 (388)
10 2y4t_A DNAJ homolog subfamily 99.8 4.9E-18 1.7E-22 129.7 22.2 204 8-216 24-242 (450)
11 3mkr_A Coatomer subunit epsilo 99.8 1.9E-17 6.5E-22 119.9 22.2 200 6-216 61-266 (291)
12 2ho1_A Type 4 fimbrial biogene 99.8 3.6E-17 1.2E-21 115.6 23.2 203 10-216 37-240 (252)
13 2vq2_A PILW, putative fimbrial 99.8 6.3E-17 2.1E-21 112.2 23.7 205 9-216 7-213 (225)
14 2q7f_A YRRB protein; TPR, prot 99.8 9.2E-18 3.2E-22 117.9 19.5 204 8-216 21-224 (243)
15 3uq3_A Heat shock protein STI1 99.8 2.5E-17 8.7E-22 116.5 21.9 202 10-215 5-237 (258)
16 2y4t_A DNAJ homolog subfamily 99.8 3.4E-17 1.2E-21 125.1 23.3 204 7-216 57-288 (450)
17 4eqf_A PEX5-related protein; a 99.8 8.1E-18 2.8E-22 125.3 19.3 203 9-215 64-311 (365)
18 4eqf_A PEX5-related protein; a 99.8 1.6E-17 5.4E-22 123.8 20.3 171 43-216 63-278 (365)
19 3hym_B Cell division cycle pro 99.8 7.9E-17 2.7E-21 118.0 23.5 204 9-216 89-301 (330)
20 1fch_A Peroxisomal targeting s 99.8 4.4E-16 1.5E-20 115.8 26.2 203 9-215 63-315 (368)
21 3hym_B Cell division cycle pro 99.8 3.2E-16 1.1E-20 114.8 24.5 205 5-214 17-222 (330)
22 3ieg_A DNAJ homolog subfamily 99.8 5.7E-16 2E-20 114.5 23.4 204 9-216 2-219 (359)
23 3cv0_A Peroxisome targeting si 99.8 3.4E-16 1.2E-20 114.5 20.2 204 9-216 20-271 (327)
24 1fch_A Peroxisomal targeting s 99.8 8E-16 2.7E-20 114.5 22.0 201 9-212 97-357 (368)
25 3mkr_A Coatomer subunit epsilo 99.7 6.7E-16 2.3E-20 111.8 20.6 193 11-216 35-231 (291)
26 3cv0_A Peroxisome targeting si 99.7 9E-16 3.1E-20 112.2 21.4 170 44-216 20-237 (327)
27 3vtx_A MAMA; tetratricopeptide 99.7 2.5E-15 8.7E-20 101.3 20.5 167 9-179 4-170 (184)
28 3ieg_A DNAJ homolog subfamily 99.7 6.7E-15 2.3E-19 108.7 24.0 205 8-216 35-265 (359)
29 3nf1_A KLC 1, kinesin light ch 99.7 3.2E-16 1.1E-20 113.8 16.5 208 9-216 26-309 (311)
30 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.5E-20 105.2 18.5 170 42-216 2-182 (217)
31 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.5E-15 8.6E-20 107.3 19.9 202 9-216 42-246 (275)
32 1ouv_A Conserved hypothetical 99.7 6E-14 2E-18 100.4 26.2 188 12-214 40-251 (273)
33 2gw1_A Mitochondrial precursor 99.7 2.6E-15 8.9E-20 116.3 19.9 202 10-215 237-479 (514)
34 2ond_A Cleavage stimulation fa 99.7 3.8E-14 1.3E-18 103.4 24.9 205 8-216 48-272 (308)
35 3vtx_A MAMA; tetratricopeptide 99.7 1.2E-14 4E-19 98.0 20.6 169 44-216 4-172 (184)
36 3u4t_A TPR repeat-containing p 99.7 6.3E-15 2.1E-19 105.2 20.2 204 10-216 37-252 (272)
37 1ouv_A Conserved hypothetical 99.7 8.9E-14 3.1E-18 99.5 26.3 192 9-215 5-216 (273)
38 2gw1_A Mitochondrial precursor 99.7 2.4E-15 8.3E-20 116.5 19.3 167 44-215 236-402 (514)
39 3fp2_A TPR repeat-containing p 99.7 1E-14 3.5E-19 113.7 21.4 205 8-216 274-493 (537)
40 3u4t_A TPR repeat-containing p 99.7 2E-14 6.9E-19 102.6 21.3 202 9-214 2-208 (272)
41 1b89_A Protein (clathrin heavy 99.7 2.5E-16 8.4E-21 118.0 10.9 179 11-215 33-237 (449)
42 2ho1_A Type 4 fimbrial biogene 99.7 6.1E-14 2.1E-18 99.0 22.1 176 8-188 69-245 (252)
43 2q7f_A YRRB protein; TPR, prot 99.7 4.2E-14 1.4E-18 99.1 20.1 169 8-180 55-223 (243)
44 2vq2_A PILW, putative fimbrial 99.7 4.8E-14 1.7E-18 97.5 20.1 170 44-216 7-178 (225)
45 1b89_A Protein (clathrin heavy 99.7 9E-17 3.1E-21 120.4 6.4 160 22-211 15-174 (449)
46 4abn_A Tetratricopeptide repea 99.7 4.6E-15 1.6E-19 114.4 15.5 196 9-209 101-316 (474)
47 2h6f_A Protein farnesyltransfe 99.6 4.8E-14 1.6E-18 105.6 19.8 197 10-211 97-302 (382)
48 2h6f_A Protein farnesyltransfe 99.6 5.5E-14 1.9E-18 105.3 20.0 203 9-217 130-351 (382)
49 3as5_A MAMA; tetratricopeptide 99.6 4.2E-14 1.4E-18 94.8 17.7 166 10-179 8-173 (186)
50 3fp2_A TPR repeat-containing p 99.6 1.1E-13 3.7E-18 107.9 21.6 200 12-216 245-459 (537)
51 3as5_A MAMA; tetratricopeptide 99.6 1.4E-13 4.9E-18 92.2 19.0 168 45-216 8-175 (186)
52 4gyw_A UDP-N-acetylglucosamine 99.6 8.9E-14 3E-18 111.8 19.7 166 9-178 8-173 (723)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-13 6.2E-18 97.6 18.6 189 20-214 15-206 (275)
54 3edt_B KLC 2, kinesin light ch 99.6 2.4E-14 8.2E-19 102.3 13.7 194 22-215 13-282 (283)
55 4gyw_A UDP-N-acetylglucosamine 99.6 1.1E-13 3.7E-18 111.3 18.7 168 44-215 8-175 (723)
56 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4.2E-18 97.4 16.9 169 45-216 5-204 (258)
57 4abn_A Tetratricopeptide repea 99.6 2.5E-13 8.5E-18 104.8 19.4 186 26-216 84-289 (474)
58 4i17_A Hypothetical protein; T 99.6 3.8E-13 1.3E-17 93.7 18.5 197 8-216 5-211 (228)
59 4i17_A Hypothetical protein; T 99.6 1.7E-12 5.8E-17 90.4 20.5 154 44-201 6-169 (228)
60 2ooe_A Cleavage stimulation fa 99.5 7.3E-12 2.5E-16 97.9 24.3 203 9-215 271-493 (530)
61 1qqe_A Vesicular transport pro 99.5 8.7E-13 3E-17 95.5 15.6 203 11-215 38-270 (292)
62 3ulq_A Response regulator aspa 99.5 1.8E-12 6.2E-17 97.2 17.4 203 10-215 143-369 (383)
63 2ond_A Cleavage stimulation fa 99.5 2.8E-11 9.6E-16 88.2 23.2 200 10-214 8-232 (308)
64 2fo7_A Synthetic consensus TPR 99.5 8.1E-12 2.8E-16 79.0 16.2 129 47-178 3-131 (136)
65 3qky_A Outer membrane assembly 99.5 1.3E-11 4.4E-16 87.7 18.4 190 9-202 14-249 (261)
66 3edt_B KLC 2, kinesin light ch 99.4 1.6E-12 5.5E-17 92.8 12.5 170 9-178 42-280 (283)
67 3q15_A PSP28, response regulat 99.4 2.2E-11 7.5E-16 91.2 18.9 201 10-214 141-365 (378)
68 2fo7_A Synthetic consensus TPR 99.4 2.7E-11 9.3E-16 76.6 16.7 130 12-144 3-132 (136)
69 3nf1_A KLC 1, kinesin light ch 99.4 6.3E-12 2.1E-16 91.1 15.3 171 44-214 26-224 (311)
70 4a1s_A PINS, partner of inscut 99.4 2.2E-12 7.5E-17 97.4 12.9 203 11-214 49-292 (411)
71 3mv2_B Coatomer subunit epsilo 99.4 3.1E-11 1E-15 86.9 17.3 181 29-216 85-284 (310)
72 4a1s_A PINS, partner of inscut 99.4 4.7E-12 1.6E-16 95.5 13.9 206 10-215 126-373 (411)
73 3sf4_A G-protein-signaling mod 99.4 7.4E-12 2.5E-16 94.0 14.6 205 10-214 87-336 (406)
74 3qky_A Outer membrane assembly 99.4 3.2E-11 1.1E-15 85.6 17.1 172 43-216 13-226 (261)
75 4g1t_A Interferon-induced prot 99.4 1.9E-10 6.4E-15 88.3 22.6 206 8-216 49-278 (472)
76 2xm6_A Protein corresponding t 99.4 1.1E-09 3.7E-14 84.8 26.5 189 9-212 38-250 (490)
77 1qqe_A Vesicular transport pro 99.4 2E-11 6.7E-16 88.4 15.6 177 25-216 32-230 (292)
78 3ro2_A PINS homolog, G-protein 99.4 6E-12 2E-16 91.9 13.0 206 10-215 83-333 (338)
79 3ulq_A Response regulator aspa 99.4 5.8E-11 2E-15 89.0 18.1 196 16-211 109-332 (383)
80 2pzi_A Probable serine/threoni 99.4 3.2E-11 1.1E-15 97.0 17.5 173 21-200 402-583 (681)
81 3sf4_A G-protein-signaling mod 99.4 8.3E-12 2.8E-16 93.7 13.4 207 7-214 6-256 (406)
82 3urz_A Uncharacterized protein 99.4 3.9E-11 1.3E-15 82.4 15.6 175 10-191 4-196 (208)
83 3urz_A Uncharacterized protein 99.4 4.8E-11 1.6E-15 82.0 15.0 165 46-216 5-188 (208)
84 2xm6_A Protein corresponding t 99.4 2.3E-09 7.7E-14 83.0 26.0 188 10-212 75-286 (490)
85 2ooe_A Cleavage stimulation fa 99.4 4.5E-10 1.5E-14 87.8 22.1 184 27-215 255-455 (530)
86 2yhc_A BAMD, UPF0169 lipoprote 99.4 4.8E-10 1.7E-14 77.9 20.1 186 9-214 3-213 (225)
87 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5.3E-16 89.7 13.1 93 14-107 9-110 (338)
88 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.6E-10 1.2E-14 78.5 18.8 151 44-216 3-178 (225)
89 4g1t_A Interferon-induced prot 99.3 3.3E-10 1.1E-14 87.0 19.5 204 10-216 209-461 (472)
90 2vsy_A XCC0866; transferase, g 99.3 1.1E-10 3.7E-15 92.0 17.0 154 23-180 2-158 (568)
91 2vsy_A XCC0866; transferase, g 99.3 1.6E-10 5.4E-15 91.1 17.1 134 9-145 22-158 (568)
92 3rjv_A Putative SEL1 repeat pr 99.3 5.8E-10 2E-14 76.8 18.0 174 29-214 5-197 (212)
93 2r5s_A Uncharacterized protein 99.3 4.2E-11 1.4E-15 80.1 11.9 78 134-212 93-171 (176)
94 3qou_A Protein YBBN; thioredox 99.3 2.2E-10 7.6E-15 82.6 16.2 168 42-213 114-283 (287)
95 3mv2_B Coatomer subunit epsilo 99.3 5.4E-10 1.8E-14 80.5 17.0 172 7-186 97-287 (310)
96 1xi4_A Clathrin heavy chain; a 99.3 8.8E-10 3E-14 92.7 20.4 183 10-216 1105-1311(1630)
97 1hz4_A MALT regulatory protein 99.3 1.2E-09 4.3E-14 81.3 19.7 203 12-214 95-322 (373)
98 4ga2_A E3 SUMO-protein ligase 99.3 4.1E-11 1.4E-15 78.0 10.0 111 22-135 9-119 (150)
99 3qou_A Protein YBBN; thioredox 99.3 2.1E-10 7E-15 82.8 14.7 165 9-177 116-282 (287)
100 4ga2_A E3 SUMO-protein ligase 99.3 6.7E-11 2.3E-15 77.0 10.6 145 51-200 3-149 (150)
101 3q15_A PSP28, response regulat 99.3 6.9E-10 2.4E-14 83.1 17.6 195 16-210 107-328 (378)
102 2r5s_A Uncharacterized protein 99.3 2E-10 6.9E-15 76.7 13.3 165 10-178 6-172 (176)
103 1hz4_A MALT regulatory protein 99.2 1.7E-09 5.7E-14 80.6 18.7 202 12-213 55-281 (373)
104 3u3w_A Transcriptional activat 99.2 7.2E-09 2.4E-13 74.8 21.1 165 50-214 80-266 (293)
105 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.4E-09 8.2E-14 73.4 17.9 128 11-144 7-150 (213)
106 2ifu_A Gamma-SNAP; membrane fu 99.2 4.7E-10 1.6E-14 81.7 14.7 192 11-207 37-254 (307)
107 3rjv_A Putative SEL1 repeat pr 99.2 4.8E-09 1.6E-13 72.2 19.0 165 8-181 16-199 (212)
108 2pzi_A Probable serine/threoni 99.2 2.2E-10 7.4E-15 92.2 13.6 156 56-216 402-565 (681)
109 2ifu_A Gamma-SNAP; membrane fu 99.2 6.1E-10 2.1E-14 81.1 14.9 176 23-216 29-225 (307)
110 1hh8_A P67PHOX, NCF-2, neutrop 99.2 4.4E-09 1.5E-13 72.1 18.5 145 47-196 8-167 (213)
111 1xi4_A Clathrin heavy chain; a 99.2 7.4E-09 2.5E-13 87.3 20.3 147 44-214 1104-1250(1630)
112 3u3w_A Transcriptional activat 99.2 3.2E-09 1.1E-13 76.7 16.3 164 15-178 80-265 (293)
113 2qfc_A PLCR protein; TPR, HTH, 99.1 2E-08 7E-13 72.4 19.7 167 47-213 77-265 (293)
114 2c2l_A CHIP, carboxy terminus 99.1 6.2E-10 2.1E-14 80.1 11.2 195 8-213 2-198 (281)
115 2qfc_A PLCR protein; TPR, HTH, 99.1 9.9E-09 3.4E-13 74.1 16.9 165 13-177 78-264 (293)
116 3dra_A Protein farnesyltransfe 99.1 3.5E-08 1.2E-12 71.5 19.6 202 12-217 69-291 (306)
117 1a17_A Serine/threonine protei 99.1 7.2E-09 2.5E-13 67.9 14.7 96 12-109 15-110 (166)
118 4e6h_A MRNA 3'-END-processing 99.1 1.9E-08 6.4E-13 80.5 19.1 206 9-216 342-572 (679)
119 1a17_A Serine/threonine protei 99.1 8.6E-09 2.9E-13 67.5 14.4 130 45-177 13-144 (166)
120 3gw4_A Uncharacterized protein 99.1 2E-09 6.9E-14 73.1 11.7 158 21-179 3-176 (203)
121 3gw4_A Uncharacterized protein 99.1 2.9E-09 9.9E-14 72.3 12.3 158 56-214 3-176 (203)
122 3e4b_A ALGK; tetratricopeptide 99.1 1.5E-07 5E-12 72.2 22.9 190 9-214 175-387 (452)
123 1na0_A Designed protein CTPR3; 99.1 1.1E-08 3.6E-13 63.5 13.6 97 11-109 10-106 (125)
124 4f3v_A ESX-1 secretion system 99.1 3.1E-09 1.1E-13 75.6 12.1 189 22-216 18-239 (282)
125 2lni_A Stress-induced-phosphop 99.1 1.1E-08 3.8E-13 64.4 13.7 118 8-128 14-131 (133)
126 1na0_A Designed protein CTPR3; 99.1 1.4E-08 4.9E-13 62.9 14.0 96 46-143 10-105 (125)
127 2vyi_A SGTA protein; chaperone 99.1 1.1E-08 3.8E-13 64.0 13.4 119 80-201 12-130 (131)
128 4gco_A Protein STI-1; structur 99.1 1.1E-08 3.8E-13 64.4 13.2 94 13-108 16-109 (126)
129 2vyi_A SGTA protein; chaperone 99.0 5.9E-09 2E-13 65.3 11.8 117 10-129 12-128 (131)
130 3gyz_A Chaperone protein IPGC; 99.0 3.6E-08 1.2E-12 64.0 15.7 96 47-144 38-133 (151)
131 2lni_A Stress-induced-phosphop 99.0 1.8E-08 6.2E-13 63.3 13.9 98 80-179 16-113 (133)
132 4gco_A Protein STI-1; structur 99.0 2.2E-08 7.5E-13 63.0 13.9 96 47-144 15-110 (126)
133 1p5q_A FKBP52, FK506-binding p 99.0 1.4E-08 4.9E-13 74.8 14.2 130 45-176 147-291 (336)
134 3e4b_A ALGK; tetratricopeptide 99.0 1.7E-07 5.9E-12 71.8 20.3 191 11-214 142-351 (452)
135 2e2e_A Formate-dependent nitri 99.0 1.7E-08 5.7E-13 67.2 12.9 118 58-178 23-143 (177)
136 1p5q_A FKBP52, FK506-binding p 99.0 2.1E-08 7E-13 74.0 14.4 142 59-204 127-283 (336)
137 2e2e_A Formate-dependent nitri 99.0 6.5E-09 2.2E-13 69.2 10.6 122 20-144 20-144 (177)
138 3gyz_A Chaperone protein IPGC; 99.0 3.1E-08 1.1E-12 64.3 13.5 104 79-186 35-138 (151)
139 2vgx_A Chaperone SYCD; alterna 99.0 4.1E-09 1.4E-13 68.3 8.7 112 66-180 8-119 (148)
140 2fbn_A 70 kDa peptidylprolyl i 98.9 3E-09 1E-13 72.3 7.4 96 47-143 40-150 (198)
141 2vgx_A Chaperone SYCD; alterna 98.9 1.2E-08 4.1E-13 66.1 9.6 99 44-144 20-118 (148)
142 4b4t_Q 26S proteasome regulato 98.9 1.8E-07 6.3E-12 70.9 17.5 197 17-213 11-244 (434)
143 1elw_A TPR1-domain of HOP; HOP 98.9 1.6E-07 5.5E-12 57.5 14.0 98 10-109 4-101 (118)
144 2kck_A TPR repeat; tetratricop 98.9 8.6E-08 2.9E-12 58.2 12.0 94 83-178 9-105 (112)
145 1elw_A TPR1-domain of HOP; HOP 98.9 2.3E-07 7.8E-12 56.8 13.9 96 46-143 5-100 (118)
146 4gcn_A Protein STI-1; structur 98.9 7.9E-08 2.7E-12 60.4 11.9 96 12-108 10-111 (127)
147 2kck_A TPR repeat; tetratricop 98.9 1E-07 3.6E-12 57.8 12.1 101 114-216 5-108 (112)
148 2xcb_A PCRH, regulatory protei 98.9 8.9E-08 3E-12 61.4 11.9 94 13-108 21-114 (142)
149 2xcb_A PCRH, regulatory protei 98.8 2.3E-08 7.8E-13 64.2 9.0 100 79-180 17-116 (142)
150 2fbn_A 70 kDa peptidylprolyl i 98.8 1.3E-07 4.6E-12 64.0 13.1 131 11-143 39-185 (198)
151 4e6h_A MRNA 3'-END-processing 98.8 4.1E-07 1.4E-11 72.9 17.4 186 26-215 325-534 (679)
152 3upv_A Heat shock protein STI1 98.8 1.9E-07 6.6E-12 58.3 12.7 22 16-37 10-31 (126)
153 2dba_A Smooth muscle cell asso 98.8 4E-07 1.4E-11 58.2 14.3 98 9-109 27-128 (148)
154 3upv_A Heat shock protein STI1 98.8 1.8E-07 6.2E-12 58.5 12.3 94 47-142 6-99 (126)
155 4gcn_A Protein STI-1; structur 98.8 1.9E-07 6.5E-12 58.7 12.3 96 47-143 10-111 (127)
156 2dba_A Smooth muscle cell asso 98.8 5.2E-07 1.8E-11 57.7 14.7 98 44-144 27-128 (148)
157 3sz7_A HSC70 cochaperone (SGT) 98.8 2.2E-07 7.6E-12 61.0 13.1 99 9-109 10-108 (164)
158 3q49_B STIP1 homology and U bo 98.8 3.2E-07 1.1E-11 58.0 13.4 96 10-107 9-104 (137)
159 2c2l_A CHIP, carboxy terminus 98.8 7.8E-08 2.7E-12 69.0 11.7 163 44-215 3-165 (281)
160 3dra_A Protein farnesyltransfe 98.8 8.1E-06 2.8E-10 59.2 22.1 188 21-213 44-249 (306)
161 3q49_B STIP1 homology and U bo 98.8 1.6E-07 5.4E-12 59.5 11.8 100 78-179 7-106 (137)
162 1elr_A TPR2A-domain of HOP; HO 98.8 9.7E-08 3.3E-12 59.6 10.4 61 47-108 6-66 (131)
163 3sz7_A HSC70 cochaperone (SGT) 98.8 1.4E-07 4.9E-12 61.9 11.4 100 79-180 10-109 (164)
164 1elr_A TPR2A-domain of HOP; HO 98.8 1.5E-07 5.2E-12 58.7 11.0 109 10-121 4-118 (131)
165 3q7a_A Farnesyltransferase alp 98.8 2.2E-06 7.6E-11 63.0 18.0 201 13-217 91-335 (349)
166 3ro3_A PINS homolog, G-protein 98.7 9.9E-08 3.4E-12 61.8 9.5 97 11-107 10-116 (164)
167 1hxi_A PEX5, peroxisome target 98.7 2.4E-07 8.1E-12 57.7 10.5 94 83-178 20-113 (121)
168 1hxi_A PEX5, peroxisome target 98.7 3.4E-07 1.2E-11 57.0 11.2 96 12-109 19-114 (121)
169 3ro3_A PINS homolog, G-protein 98.7 1.6E-07 5.4E-12 60.9 9.8 61 47-107 11-76 (164)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 6.2E-07 2.1E-11 68.9 14.4 122 12-135 270-405 (457)
171 1wao_1 Serine/threonine protei 98.7 2E-08 6.7E-13 77.6 5.7 125 12-139 8-134 (477)
172 4f3v_A ESX-1 secretion system 98.7 5E-07 1.7E-11 64.3 12.3 129 13-144 105-237 (282)
173 1wao_1 Serine/threonine protei 98.7 1.5E-08 5E-13 78.3 4.4 124 49-175 10-135 (477)
174 2xev_A YBGF; tetratricopeptide 98.6 1.2E-06 4E-11 54.7 12.0 100 83-186 5-110 (129)
175 3dss_A Geranylgeranyl transfer 98.6 2.2E-05 7.6E-10 57.4 20.2 185 26-217 90-307 (331)
176 2xev_A YBGF; tetratricopeptide 98.6 3.2E-06 1.1E-10 52.7 14.0 94 14-109 6-105 (129)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 8.2E-07 2.8E-11 68.2 12.8 131 45-177 268-413 (457)
178 3k9i_A BH0479 protein; putativ 98.6 2.1E-07 7.1E-12 57.5 7.8 85 58-143 3-89 (117)
179 1ihg_A Cyclophilin 40; ppiase 98.6 1.5E-06 5.2E-11 64.8 13.0 96 48-144 226-336 (370)
180 3k9i_A BH0479 protein; putativ 98.6 1.2E-07 4.2E-12 58.6 5.7 87 92-179 2-90 (117)
181 4b4t_Q 26S proteasome regulato 98.6 2.4E-06 8.3E-11 64.7 13.9 163 52-214 11-204 (434)
182 3n71_A Histone lysine methyltr 98.5 5.4E-07 1.9E-11 69.6 10.0 123 20-142 319-462 (490)
183 1ihg_A Cyclophilin 40; ppiase 98.5 1.1E-06 3.9E-11 65.6 11.5 125 81-207 224-363 (370)
184 2hr2_A Hypothetical protein; a 98.5 2.3E-06 7.9E-11 55.5 11.2 62 82-143 59-130 (159)
185 3dss_A Geranylgeranyl transfer 98.5 9.5E-05 3.3E-09 54.1 21.0 191 21-216 40-269 (331)
186 3rkv_A Putative peptidylprolyl 98.5 3.2E-06 1.1E-10 55.2 12.2 63 81-144 64-126 (162)
187 3q7a_A Farnesyltransferase alp 98.5 8.3E-05 2.9E-09 54.7 20.6 184 13-201 57-258 (349)
188 3n71_A Histone lysine methyltr 98.5 5.8E-07 2E-11 69.4 9.4 124 55-178 319-463 (490)
189 2if4_A ATFKBP42; FKBP-like, al 98.5 6.2E-07 2.1E-11 66.1 8.6 112 47-178 181-292 (338)
190 3rkv_A Putative peptidylprolyl 98.5 4.1E-06 1.4E-10 54.7 11.6 69 115-186 63-131 (162)
191 2if4_A ATFKBP42; FKBP-like, al 98.5 6.2E-07 2.1E-11 66.1 8.2 116 81-216 180-295 (338)
192 1dce_A Protein (RAB geranylger 98.5 3.2E-05 1.1E-09 61.0 18.2 175 24-203 43-244 (567)
193 2hr2_A Hypothetical protein; a 98.4 4.5E-06 1.5E-10 54.1 10.5 98 81-178 12-130 (159)
194 2uy1_A Cleavage stimulation fa 98.4 9E-05 3.1E-09 57.5 18.2 189 8-213 211-412 (493)
195 1klx_A Cysteine rich protein B 98.3 3.3E-05 1.1E-09 49.1 13.1 110 25-145 10-127 (138)
196 1klx_A Cysteine rich protein B 98.3 2.9E-05 9.9E-10 49.3 12.5 113 58-181 8-128 (138)
197 2l6j_A TPR repeat-containing p 98.3 6.9E-07 2.4E-11 54.2 4.2 65 9-74 3-67 (111)
198 1dce_A Protein (RAB geranylger 98.2 0.00015 5.2E-09 57.2 16.7 153 60-216 44-223 (567)
199 2l6j_A TPR repeat-containing p 98.2 1.1E-05 3.6E-10 48.8 7.9 65 44-109 3-67 (111)
200 2kat_A Uncharacterized protein 98.2 1.7E-05 5.7E-10 48.5 8.4 80 98-179 3-82 (115)
201 1na3_A Designed protein CTPR2; 98.1 7E-05 2.4E-09 43.3 10.1 63 11-74 10-72 (91)
202 1na3_A Designed protein CTPR2; 98.1 5.1E-05 1.7E-09 43.9 9.4 63 46-109 10-72 (91)
203 2kat_A Uncharacterized protein 98.1 4.1E-05 1.4E-09 46.7 9.0 62 80-142 19-80 (115)
204 1zu2_A Mitochondrial import re 98.1 3.2E-05 1.1E-09 50.0 8.3 97 21-121 13-130 (158)
205 3ma5_A Tetratricopeptide repea 98.0 4.7E-05 1.6E-09 45.3 7.7 86 114-200 6-92 (100)
206 1zu2_A Mitochondrial import re 97.9 5.7E-05 2E-09 48.9 7.7 99 56-158 13-132 (158)
207 3ma5_A Tetratricopeptide repea 97.9 0.00011 3.6E-09 43.8 8.4 62 10-72 7-68 (100)
208 3qwp_A SET and MYND domain-con 97.9 0.00019 6.5E-09 54.6 10.7 91 52-142 294-398 (429)
209 3qww_A SET and MYND domain-con 97.8 0.00011 3.6E-09 56.0 9.1 84 59-142 312-409 (433)
210 3qww_A SET and MYND domain-con 97.8 7E-05 2.4E-09 57.0 7.8 85 94-178 312-410 (433)
211 3qwp_A SET and MYND domain-con 97.8 0.00011 3.9E-09 55.8 8.9 91 87-177 294-398 (429)
212 3ly7_A Transcriptional activat 97.8 0.0024 8.2E-08 47.2 14.7 144 41-190 190-348 (372)
213 2uy1_A Cleavage stimulation fa 97.8 0.0012 4E-08 51.3 13.9 173 26-211 195-380 (493)
214 3ly7_A Transcriptional activat 97.7 0.00086 2.9E-08 49.5 12.2 137 76-216 190-341 (372)
215 3mkq_A Coatomer beta'-subunit; 97.7 0.0011 3.8E-08 54.3 14.2 101 18-142 607-708 (814)
216 3mkq_A Coatomer beta'-subunit; 97.6 0.0049 1.7E-07 50.5 16.6 131 13-176 632-762 (814)
217 2kc7_A BFR218_protein; tetratr 97.5 0.0005 1.7E-08 40.4 7.2 58 16-74 6-64 (99)
218 3mkq_B Coatomer subunit alpha; 97.5 0.0076 2.6E-07 39.6 13.9 129 18-176 13-141 (177)
219 2kc7_A BFR218_protein; tetratr 97.5 0.00033 1.1E-08 41.2 6.1 57 87-144 7-64 (99)
220 1pc2_A Mitochondria fission pr 97.5 0.0012 4.1E-08 42.3 8.8 82 96-179 14-100 (152)
221 2v5f_A Prolyl 4-hydroxylase su 97.4 0.004 1.4E-07 37.2 9.8 67 8-74 3-75 (104)
222 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0019 6.4E-08 38.6 8.3 71 114-186 4-80 (104)
223 1pc2_A Mitochondria fission pr 97.2 0.012 4.2E-07 37.6 10.9 83 25-109 13-100 (152)
224 3bee_A Putative YFRE protein; 97.1 0.0053 1.8E-07 35.9 8.1 68 112-180 3-73 (93)
225 3u64_A Protein TP_0956; tetrat 97.0 0.021 7.1E-07 40.8 11.5 82 63-146 181-271 (301)
226 3bee_A Putative YFRE protein; 97.0 0.019 6.6E-07 33.4 11.2 65 44-109 5-72 (93)
227 1nzn_A CGI-135 protein, fissio 96.9 0.014 4.8E-07 36.0 8.8 88 90-179 11-103 (126)
228 3mkq_B Coatomer subunit alpha; 96.8 0.055 1.9E-06 35.6 15.6 130 52-211 12-141 (177)
229 1wy6_A Hypothetical protein ST 96.6 0.053 1.8E-06 34.0 13.4 130 12-146 7-156 (172)
230 4h7y_A Dual specificity protei 96.6 0.048 1.6E-06 34.8 9.8 103 44-148 12-127 (161)
231 3u64_A Protein TP_0956; tetrat 96.6 0.058 2E-06 38.6 11.1 93 96-190 179-282 (301)
232 1nzn_A CGI-135 protein, fissio 96.4 0.05 1.7E-06 33.6 8.7 84 25-109 16-103 (126)
233 1wy6_A Hypothetical protein ST 96.3 0.097 3.3E-06 32.8 9.8 68 44-112 90-157 (172)
234 4gns_B Protein CSD3, chitin bi 96.3 0.061 2.1E-06 43.8 11.0 125 14-141 252-397 (754)
235 4h7y_A Dual specificity protei 96.2 0.12 4.1E-06 33.0 10.2 104 8-113 11-127 (161)
236 4gns_B Protein CSD3, chitin bi 96.1 0.27 9.4E-06 40.1 13.9 125 49-177 252-398 (754)
237 2ff4_A Probable regulatory pro 96.0 0.25 8.5E-06 37.0 12.8 116 79-195 111-255 (388)
238 2ff4_A Probable regulatory pro 95.9 0.056 1.9E-06 40.6 8.6 76 84-160 175-255 (388)
239 1v54_E Cytochrome C oxidase po 95.8 0.13 4.5E-06 30.2 8.1 65 130-195 25-89 (109)
240 3lvg_A Clathrin heavy chain 1; 95.8 4.8E-06 1.7E-10 63.2 -13.3 185 10-214 54-258 (624)
241 4fhn_B Nucleoporin NUP120; pro 95.5 0.57 1.9E-05 40.4 14.3 147 50-204 817-990 (1139)
242 4fhn_B Nucleoporin NUP120; pro 95.3 0.65 2.2E-05 40.1 14.1 193 14-214 816-1050(1139)
243 1v54_E Cytochrome C oxidase po 95.1 0.25 8.6E-06 29.0 9.1 63 25-88 25-87 (109)
244 2y69_E Cytochrome C oxidase su 94.3 0.55 1.9E-05 29.3 9.1 61 63-124 71-131 (152)
245 2y69_E Cytochrome C oxidase su 94.2 0.56 1.9E-05 29.2 8.6 62 96-158 69-130 (152)
246 4b4t_P 26S proteasome regulato 94.1 1.5 5E-05 33.6 17.0 172 6-177 52-245 (445)
247 3lvg_A Clathrin heavy chain 1; 93.1 0.0025 8.7E-08 48.8 -4.3 125 9-142 82-226 (624)
248 3o48_A Mitochondria fission 1 92.6 1.1 3.9E-05 27.8 9.1 66 113-178 38-106 (134)
249 4b4t_R RPN7, 26S proteasome re 92.2 2.1 7.3E-05 32.5 10.4 97 12-108 133-236 (429)
250 1y8m_A FIS1; mitochondria, unk 92.1 1.4 4.8E-05 27.7 10.8 68 112-179 36-106 (144)
251 1k1a_A B-cell lymphoma 3-encod 92.1 1.9 6.5E-05 29.2 10.2 181 16-209 12-204 (241)
252 3txn_A 26S proteasome regulato 91.7 3.2 0.00011 31.2 15.6 167 11-177 20-208 (394)
253 4b4t_P 26S proteasome regulato 91.6 3.6 0.00012 31.4 18.9 189 24-212 30-245 (445)
254 1zbp_A Hypothetical protein VP 91.4 1.1 3.7E-05 31.6 7.3 71 123-194 5-77 (273)
255 3ffl_A Anaphase-promoting comp 90.9 2.2 7.5E-05 27.7 9.6 61 12-72 22-90 (167)
256 3hra_A Ankyrin repeat family p 89.5 3.1 0.00011 27.2 8.4 184 17-207 9-197 (201)
257 4b4t_R RPN7, 26S proteasome re 89.2 6 0.00021 30.0 12.5 97 47-143 133-236 (429)
258 3jxi_A Vanilloid receptor-rela 88.6 1 3.5E-05 31.2 5.6 191 16-212 8-249 (260)
259 3ffl_A Anaphase-promoting comp 88.5 3.6 0.00012 26.7 9.2 116 83-211 23-148 (167)
260 3o48_A Mitochondria fission 1 88.4 3.1 0.00011 25.8 10.5 68 42-109 37-107 (134)
261 3esl_A Checkpoint serine/threo 87.7 4.7 0.00016 27.1 9.1 57 93-149 92-149 (202)
262 2uwj_G Type III export protein 87.7 2.9 9.8E-05 24.6 6.1 49 125-179 49-97 (115)
263 3txn_A 26S proteasome regulato 87.6 7.5 0.00026 29.2 15.3 164 46-210 20-206 (394)
264 2p58_C Putative type III secre 87.2 3.1 0.00011 24.5 6.6 15 125-139 50-64 (116)
265 2uwj_G Type III export protein 84.8 4.3 0.00015 23.9 7.1 51 89-145 48-98 (115)
266 2d2s_A Exocyst complex compone 84.4 8.1 0.00028 26.7 10.0 92 13-107 21-118 (235)
267 2p58_C Putative type III secre 84.3 4.6 0.00016 23.8 8.0 49 90-144 50-98 (116)
268 3esl_A Checkpoint serine/threo 84.1 7.5 0.00026 26.1 9.0 59 128-186 92-151 (202)
269 3eu9_A Huntingtin-interacting 83.6 7.2 0.00025 26.1 7.8 17 193-209 215-231 (240)
270 3lpz_A GET4 (YOR164C homolog); 83.2 11 0.00039 27.5 20.1 102 55-160 65-177 (336)
271 1k1a_A B-cell lymphoma 3-encod 83.1 8.4 0.00029 25.9 8.6 149 52-209 13-171 (241)
272 2etb_A Transient receptor pote 82.9 7.1 0.00024 26.7 7.6 189 15-211 4-244 (256)
273 3kea_A K1L; tropism, ANK repea 82.5 11 0.00036 26.6 9.6 18 122-139 165-182 (285)
274 3kea_A K1L; tropism, ANK repea 82.1 11 0.00037 26.5 8.4 144 16-175 34-183 (285)
275 2wpv_A GET4, UPF0363 protein Y 81.7 13 0.00043 27.0 15.4 161 17-177 20-215 (312)
276 3eu9_A Huntingtin-interacting 81.5 8.8 0.0003 25.7 7.6 174 17-210 13-199 (240)
277 1mzb_A Ferric uptake regulatio 81.0 1.8 6.1E-05 27.0 3.5 63 35-98 8-71 (136)
278 1y8m_A FIS1; mitochondria, unk 80.9 8.2 0.00028 24.3 12.0 68 42-109 36-106 (144)
279 2d2s_A Exocyst complex compone 80.5 12 0.0004 25.9 8.3 92 50-144 23-120 (235)
280 2fe3_A Peroxide operon regulat 80.5 2.1 7.2E-05 27.0 3.8 64 34-98 11-74 (145)
281 3eyy_A Putative iron uptake re 80.4 2.3 8E-05 26.8 3.9 62 34-97 8-69 (145)
282 3aji_A 26S proteasome non-ATPa 78.6 12 0.00042 24.9 8.1 114 16-138 9-126 (231)
283 4ady_A RPN2, 26S proteasome re 78.4 31 0.001 29.4 13.3 153 55-211 500-655 (963)
284 2wvi_A Mitotic checkpoint seri 78.3 9.1 0.00031 24.8 6.2 50 99-148 79-129 (164)
285 1wdy_A 2-5A-dependent ribonucl 77.7 15 0.0005 25.3 8.8 15 169-183 198-212 (285)
286 4a1g_A Mitotic checkpoint seri 77.2 12 0.0004 23.9 8.7 50 134-183 84-134 (152)
287 2nsz_A Programmed cell death p 77.2 10 0.00035 23.3 6.4 25 13-37 10-34 (129)
288 3l6a_A Eukaryotic translation 77.1 14 0.00047 27.5 7.7 63 47-113 14-81 (364)
289 1wdy_A 2-5A-dependent ribonucl 75.9 17 0.00057 25.0 9.1 112 14-138 6-125 (285)
290 2pnn_A Transient receptor pote 75.2 11 0.00036 26.2 6.5 189 15-210 15-255 (273)
291 3lpz_A GET4 (YOR164C homolog); 75.1 22 0.00075 26.1 17.3 23 47-69 37-59 (336)
292 2o03_A Probable zinc uptake re 74.9 2.2 7.4E-05 26.4 2.6 45 52-96 17-61 (131)
293 3t8k_A Uncharacterized protein 74.8 15 0.00051 24.0 10.2 92 20-115 13-109 (186)
294 2ion_A PDCD4, programmed cell 74.6 14 0.00047 23.5 6.4 24 13-36 12-35 (152)
295 2wpv_A GET4, UPF0363 protein Y 73.7 23 0.00079 25.7 17.2 162 26-206 13-189 (312)
296 3eiq_C Programmed cell death p 73.3 26 0.00087 26.0 13.7 26 12-37 56-81 (358)
297 1zbp_A Hypothetical protein VP 73.1 22 0.00075 25.2 13.7 54 90-144 7-60 (273)
298 2rfa_A Transient receptor pote 72.9 18 0.00062 24.1 9.8 183 15-211 5-220 (232)
299 1bd8_A P19INK4D CDK4/6 inhibit 72.8 10 0.00035 23.5 5.5 21 15-35 4-24 (156)
300 4gq2_M Nucleoporin NUP120; bet 71.8 46 0.0016 28.3 10.6 49 151-199 898-950 (950)
301 2b7e_A PRE-mRNA processing pro 70.9 6.3 0.00022 20.5 3.3 29 97-125 3-31 (59)
302 3jxi_A Vanilloid receptor-rela 70.8 17 0.00059 24.8 6.8 94 52-150 9-121 (260)
303 3eyy_A Putative iron uptake re 70.7 17 0.00057 22.8 6.4 60 70-131 9-68 (145)
304 2wvi_A Mitotic checkpoint seri 70.3 19 0.00065 23.3 8.8 53 134-186 79-132 (164)
305 4a1g_A Mitotic checkpoint seri 70.2 18 0.00062 23.0 8.5 53 97-149 82-135 (152)
306 4aez_C MAD3, mitotic spindle c 70.2 13 0.00046 25.4 5.6 84 63-149 95-184 (223)
307 2xig_A Ferric uptake regulatio 70.0 18 0.00061 22.8 8.0 63 34-97 16-78 (150)
308 1mzb_A Ferric uptake regulatio 68.6 18 0.00061 22.3 6.5 61 71-132 9-70 (136)
309 2w57_A Ferric uptake regulatio 67.7 20 0.00069 22.6 6.6 63 34-97 6-69 (150)
310 3twr_A Tankyrase-2; ankyrin re 67.6 20 0.00067 22.4 7.6 19 16-34 11-29 (165)
311 4ets_A Ferric uptake regulatio 67.5 22 0.00074 22.8 6.4 71 26-97 13-86 (162)
312 2zu6_B Programmed cell death p 67.4 32 0.0011 24.8 14.0 26 12-37 5-30 (307)
313 2xig_A Ferric uptake regulatio 67.1 21 0.00071 22.5 7.0 29 121-149 32-60 (150)
314 2ijq_A Hypothetical protein; s 65.9 24 0.00082 22.7 8.0 48 24-71 46-101 (161)
315 3hra_A Ankyrin repeat family p 65.3 22 0.00076 23.0 6.2 126 16-150 42-173 (201)
316 2fe3_A Peroxide operon regulat 65.1 22 0.00077 22.2 7.9 63 69-132 11-73 (145)
317 4ets_A Ferric uptake regulatio 64.9 25 0.00085 22.6 6.4 56 108-164 26-83 (162)
318 4gq2_M Nucleoporin NUP120; bet 64.4 67 0.0023 27.4 10.7 108 51-164 816-950 (950)
319 2ijq_A Hypothetical protein; s 64.4 26 0.00088 22.6 8.3 49 59-107 46-102 (161)
320 2dzn_A Probable 26S proteasome 63.5 23 0.00077 23.5 6.0 173 16-208 5-194 (228)
321 2fu4_A Ferric uptake regulatio 63.1 17 0.00057 20.0 6.9 60 35-95 7-67 (83)
322 1ug3_A EIF4GI, eukaryotic prot 62.9 33 0.0011 25.1 7.0 64 13-78 14-79 (339)
323 2ion_A PDCD4, programmed cell 62.5 27 0.00092 22.2 8.2 63 48-111 12-76 (152)
324 2w57_A Ferric uptake regulatio 62.0 27 0.00092 22.0 6.2 58 106-164 8-66 (150)
325 3mwm_A ZUR, putative metal upt 61.3 15 0.00051 22.9 4.3 45 120-164 18-62 (139)
326 2o03_A Probable zinc uptake re 61.0 21 0.00071 21.9 5.0 44 16-59 16-59 (131)
327 3mwm_A ZUR, putative metal upt 60.8 18 0.00063 22.4 4.7 47 50-96 18-64 (139)
328 3l6a_A Eukaryotic translation 60.5 49 0.0017 24.5 7.7 62 12-77 14-80 (364)
329 2rg8_A Programmed cell death p 59.1 24 0.00083 22.7 5.2 25 13-37 13-37 (165)
330 3ltm_A Alpha-REP4; protein eng 58.4 36 0.0012 22.3 16.9 17 114-130 125-141 (211)
331 3t8k_A Uncharacterized protein 57.4 37 0.0012 22.1 11.3 155 54-212 12-178 (186)
332 2nsz_A Programmed cell death p 57.0 31 0.0011 21.1 9.4 63 48-111 10-74 (129)
333 4g8k_A 2-5A-dependent ribonucl 56.8 51 0.0017 23.5 10.8 150 17-185 172-329 (337)
334 3aji_A 26S proteasome non-ATPa 56.5 40 0.0014 22.3 8.8 81 52-138 10-93 (231)
335 4ady_A RPN2, 26S proteasome re 54.7 1E+02 0.0035 26.4 15.4 153 20-178 500-657 (963)
336 3ltm_A Alpha-REP4; protein eng 54.6 42 0.0014 22.0 14.0 150 43-208 31-180 (211)
337 1bd8_A P19INK4D CDK4/6 inhibit 54.1 25 0.00085 21.6 4.7 142 51-208 5-153 (156)
338 3twr_A Tankyrase-2; ankyrin re 54.1 37 0.0013 21.1 6.2 118 52-185 12-136 (165)
339 2etb_A Transient receptor pote 52.6 51 0.0017 22.3 6.5 93 51-149 5-117 (256)
340 4aez_C MAD3, mitotic spindle c 52.1 54 0.0018 22.4 8.3 56 131-186 130-186 (223)
341 4fke_A Aminopeptidase N; zinc 51.9 1.1E+02 0.0038 26.0 18.5 158 14-177 690-858 (909)
342 3qil_A Clathrin heavy chain 1; 51.9 16 0.00055 22.2 3.1 48 51-101 38-85 (125)
343 4g8k_A 2-5A-dependent ribonucl 51.3 63 0.0022 23.0 8.4 105 31-150 220-329 (337)
344 2rfa_A Transient receptor pote 50.9 51 0.0017 21.8 9.3 152 15-176 39-220 (232)
345 3f3f_C Nucleoporin NUP85; stru 50.3 71 0.0024 25.4 7.2 26 152-177 518-543 (570)
346 3qye_A TBC1 domain family memb 49.9 55 0.0019 23.7 6.4 45 137-181 210-254 (331)
347 3pvs_A Replication-associated 49.6 85 0.0029 24.0 12.4 38 92-129 267-304 (447)
348 4b4t_S RPN3, 26S proteasome re 49.2 95 0.0033 24.4 10.0 62 80-144 231-299 (523)
349 1ug3_A EIF4GI, eukaryotic prot 48.8 75 0.0026 23.2 9.5 63 48-111 14-77 (339)
350 3bu8_A Telomeric repeat-bindin 48.4 62 0.0021 22.1 11.6 49 61-109 88-143 (235)
351 3bge_A Predicted ATPase; struc 47.9 60 0.002 21.7 9.7 64 13-76 7-78 (201)
352 3ljn_A Hypothetical protein; a 47.9 76 0.0026 22.9 8.6 176 15-209 22-232 (364)
353 1wty_A Hypothetical protein TT 47.7 43 0.0015 20.0 6.6 76 95-177 3-79 (119)
354 1fad_A Protein (FADD protein); 47.5 35 0.0012 19.6 4.2 44 166-211 54-97 (99)
355 3eiq_C Programmed cell death p 47.3 84 0.0029 23.3 7.5 78 48-126 220-299 (358)
356 2f8y_A Notch homolog 1, transl 47.2 58 0.002 21.3 8.4 174 14-209 26-212 (223)
357 3lxu_X Tripeptidyl-peptidase 2 46.6 1.6E+02 0.0056 26.4 10.1 78 61-141 1265-1342(1354)
358 3ljn_A Hypothetical protein; a 46.4 80 0.0027 22.8 9.5 182 15-210 55-266 (364)
359 3f3f_C Nucleoporin NUP85; stru 45.9 1.1E+02 0.0038 24.3 8.5 72 61-134 497-568 (570)
360 3lxu_X Tripeptidyl-peptidase 2 45.9 1.6E+02 0.0054 26.4 9.1 78 131-211 1265-1342(1354)
361 1gp8_A Protein (scaffolding pr 45.5 24 0.00081 16.4 3.4 26 188-213 13-38 (40)
362 2qq8_A TBC1 domain family memb 45.4 40 0.0014 24.5 5.1 82 25-110 169-258 (334)
363 2bn5_A PSI; nuclear protein, s 44.7 22 0.00075 15.8 2.4 24 190-213 7-30 (33)
364 2r9g_A AAA ATPase, central reg 44.5 69 0.0024 21.5 10.2 65 12-77 13-85 (204)
365 3bu8_A Telomeric repeat-bindin 44.2 74 0.0025 21.7 7.5 49 26-74 88-143 (235)
366 3ltj_A Alpharep-4; protein eng 43.2 65 0.0022 20.8 15.1 121 44-177 58-178 (201)
367 1qsa_A Protein (soluble lytic 42.8 1.3E+02 0.0045 24.2 20.3 115 95-213 229-347 (618)
368 2yru_A Steroid receptor RNA ac 42.3 55 0.0019 19.8 5.2 41 33-73 49-89 (118)
369 2rg8_A Programmed cell death p 42.0 38 0.0013 21.8 4.0 26 82-107 12-37 (165)
370 2r9g_A AAA ATPase, central reg 41.6 78 0.0027 21.3 8.4 17 59-75 28-44 (204)
371 3bge_A Predicted ATPase; struc 41.6 77 0.0026 21.2 7.1 20 59-78 21-40 (201)
372 2ko4_A Mediator of RNA polymer 41.3 39 0.0013 18.7 3.3 32 5-36 31-62 (81)
373 3d9h_A CDNA FLJ77766, highly s 41.3 52 0.0018 22.9 5.1 173 16-209 62-243 (285)
374 2zu6_B Programmed cell death p 40.6 1E+02 0.0035 22.3 6.6 61 50-111 171-233 (307)
375 3b7b_A Euchromatic histone-lys 40.1 79 0.0027 20.9 7.6 179 15-213 46-235 (237)
376 3d9h_A CDNA FLJ77766, highly s 39.8 93 0.0032 21.6 10.5 148 15-184 94-249 (285)
377 3ygs_P Procaspase 9; apoptosis 39.6 54 0.0018 18.8 4.8 12 131-142 53-64 (97)
378 1n11_A Ankyrin; clathrin, BAND 39.5 1.2E+02 0.004 22.6 7.5 19 15-33 16-34 (437)
379 4fke_A Aminopeptidase N; zinc 39.3 1.8E+02 0.0061 24.7 18.0 143 50-198 691-844 (909)
380 1wgl_A TOLL-interacting protei 39.3 41 0.0014 17.4 4.5 6 166-171 39-44 (59)
381 2xai_A ASB-9, ankyrin repeat a 39.1 89 0.0031 21.2 9.8 110 17-138 7-121 (261)
382 3ctd_A Putative ATPase, AAA fa 38.8 90 0.0031 21.1 9.6 20 59-78 49-68 (213)
383 1zl8_A LIN-7; heterodimer, alp 38.7 18 0.00061 18.0 1.5 22 24-45 7-28 (53)
384 3hzj_A Rabgap1L, RAB GTPase-ac 37.1 1.1E+02 0.0038 21.8 6.6 45 137-181 176-220 (310)
385 3ltj_A Alpharep-4; protein eng 36.8 84 0.0029 20.3 17.8 150 43-208 26-175 (201)
386 3qil_A Clathrin heavy chain 1; 36.7 62 0.0021 19.7 4.0 52 117-171 34-85 (125)
387 3t5v_B Nuclear mRNA export pro 36.4 64 0.0022 24.8 5.0 61 117-177 178-247 (455)
388 2qq8_A TBC1 domain family memb 36.1 94 0.0032 22.6 5.8 44 137-180 215-258 (334)
389 2dzn_A Probable 26S proteasome 36.1 39 0.0013 22.2 3.7 142 52-208 6-160 (228)
390 1jog_A Hypothetical protein HI 36.0 80 0.0027 19.8 4.9 80 131-213 54-141 (146)
391 2f6m_A Suppressor protein STP2 35.6 52 0.0018 17.5 4.1 42 49-91 6-47 (65)
392 3bqo_A Telomeric repeat-bindin 34.9 1E+02 0.0035 20.7 5.2 49 61-109 94-146 (211)
393 1uzc_A Hypothetical protein FL 34.8 56 0.0019 17.6 3.6 31 96-126 14-44 (71)
394 2p22_A Suppressor protein STP2 34.7 42 0.0014 21.9 3.3 49 149-198 110-158 (174)
395 4hbd_A KN motif and ankyrin re 34.3 1.1E+02 0.0039 21.0 5.9 79 122-210 187-272 (276)
396 3t5v_B Nuclear mRNA export pro 34.2 1.1E+02 0.0037 23.6 6.0 62 12-73 178-248 (455)
397 3rjo_A Endoplasmic reticulum a 34.2 1.5E+02 0.0051 22.3 18.8 142 13-163 200-353 (419)
398 2qfz_A TBC1 domain family memb 34.0 79 0.0027 23.0 5.1 83 26-112 188-276 (345)
399 1bpo_A Protein (clathrin); cla 33.4 1.7E+02 0.0058 22.8 9.7 140 59-211 343-482 (494)
400 2pnn_A Transient receptor pote 33.3 1.2E+02 0.0039 20.8 6.2 19 56-74 21-39 (273)
401 1oai_A Nuclear RNA export fact 33.2 53 0.0018 17.0 3.0 22 23-44 33-55 (59)
402 3qye_A TBC1 domain family memb 32.9 1.4E+02 0.0047 21.6 9.9 135 23-164 162-308 (331)
403 2qfz_A TBC1 domain family memb 32.0 90 0.0031 22.7 5.2 74 137-210 231-311 (345)
404 3utm_A Tankyrase-1; tankyrase, 31.9 1.3E+02 0.0046 21.1 7.7 113 15-139 26-145 (351)
405 3v30_A DNA-binding protein rfx 31.5 94 0.0032 19.2 5.8 19 17-35 6-24 (172)
406 1n3k_A Astrocytic phosphoprote 31.4 64 0.0022 19.9 3.6 42 168-210 41-82 (130)
407 3ctd_A Putative ATPase, AAA fa 31.1 1.2E+02 0.0042 20.5 7.9 68 83-150 35-110 (213)
408 3ezq_B Protein FADD; apoptosis 30.9 91 0.0031 18.9 5.0 24 187-210 65-88 (122)
409 4b93_B Ankyrin repeat domain-c 30.0 1.4E+02 0.0047 20.6 8.3 27 7-34 6-32 (269)
410 2cwy_A Hypothetical protein TT 30.0 82 0.0028 18.0 4.9 16 24-39 15-30 (94)
411 3c1d_A Protein ORAA, regulator 29.8 1.1E+02 0.0037 19.4 11.1 48 62-111 47-94 (159)
412 2dod_A Transcription elongatio 29.5 78 0.0027 17.7 4.0 28 97-125 17-45 (82)
413 2p22_A Suppressor protein STP2 28.9 1.1E+02 0.0036 20.1 4.4 56 42-98 108-163 (174)
414 1wty_A Hypothetical protein TT 27.9 1E+02 0.0034 18.4 7.0 26 115-141 53-78 (119)
415 2keb_A DNA polymerase subunit 27.3 97 0.0033 18.0 6.6 29 31-59 30-58 (101)
416 2jab_A H10-2-G3; HER2, darpin, 26.9 1E+02 0.0035 18.2 7.6 22 13-34 14-35 (136)
417 3v31_A Ankyrin repeat family A 26.8 1.1E+02 0.0039 18.7 9.2 19 17-35 7-25 (167)
418 1yyh_A HN1;, notch 1, ankyrin 26.7 1.3E+02 0.0044 20.3 5.0 7 197-203 232-238 (253)
419 2crb_A Nuclear receptor bindin 26.6 98 0.0033 17.8 3.8 25 151-175 16-40 (97)
420 1rw2_A ATP-dependent DNA helic 25.9 52 0.0018 20.9 2.6 12 131-142 74-85 (152)
421 3bqo_A Telomeric repeat-bindin 25.2 1.6E+02 0.0055 19.8 5.0 21 122-142 124-144 (211)
422 2i2x_B MTAC, methyltransferase 24.1 72 0.0025 22.2 3.3 38 56-93 47-84 (258)
423 3e3v_A Regulatory protein RECX 23.4 1.6E+02 0.0054 19.1 9.3 50 62-112 50-99 (177)
424 1dp3_A TRAM protein; helix-loo 23.3 20 0.00067 18.2 0.2 34 26-59 12-45 (55)
425 1a1w_A FADD protein; apoptosis 23.2 1.1E+02 0.0038 17.3 4.7 50 160-210 30-82 (91)
426 2yqf_A Ankyrin-1; death domain 23.1 1.2E+02 0.0042 17.8 4.3 41 166-208 58-98 (111)
427 1naf_A ADP-ribosylation factor 23.0 1.3E+02 0.0046 19.2 4.1 25 32-56 21-45 (158)
428 2cos_A Serine/threonine protei 22.8 86 0.0029 15.9 3.6 11 96-106 38-48 (54)
429 3f6q_A Integrin-linked protein 21.9 1.5E+02 0.0052 18.4 7.6 112 18-138 10-125 (179)
430 3ph0_C ASCG; type III secretio 21.8 94 0.0032 16.0 3.9 14 130-143 21-34 (61)
431 3hzj_A Rabgap1L, RAB GTPase-ac 21.7 2.2E+02 0.0076 20.2 9.5 112 25-140 130-252 (310)
432 3cqc_A Nuclear pore complex pr 21.6 74 0.0025 22.5 2.9 25 13-37 37-61 (270)
433 2e2a_A Protein (enzyme IIA); h 21.3 1.4E+02 0.0047 17.6 3.7 19 20-38 30-48 (105)
434 1ixm_A SPO0B, protein (sporula 21.3 1.1E+02 0.0039 20.1 3.7 23 15-37 37-59 (192)
435 2rpa_A Katanin P60 ATPase-cont 21.1 1.2E+02 0.004 16.8 3.1 24 50-73 17-40 (78)
436 1dvk_A PRP18; PRE-mRNA splicin 20.9 1.8E+02 0.0062 18.9 4.3 44 64-107 65-109 (173)
437 1n11_A Ankyrin; clathrin, BAND 20.9 2.6E+02 0.0089 20.7 8.9 81 15-103 49-133 (437)
438 1uwk_A Urocanate hydratase; hy 20.7 73 0.0025 24.8 2.8 44 24-80 217-260 (557)
439 1awc_B Protein (GA binding pro 20.6 1.5E+02 0.0052 17.8 9.3 21 15-35 4-24 (153)
440 3k1s_A PTS system, cellobiose- 20.4 1.5E+02 0.005 17.6 7.1 19 20-38 32-50 (109)
441 1wcr_A PTS system, N, N'-diace 20.3 1.4E+02 0.0049 17.5 3.7 19 20-38 28-46 (103)
442 3mv2_A Coatomer subunit alpha; 20.1 2.6E+02 0.009 20.4 10.8 91 91-181 125-238 (325)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.7e-41 Score=259.78 Aligned_cols=197 Identities=13% Similarity=0.138 Sum_probs=183.0
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCc---------hhHHHHHHHHH
Q 035645 2 SDKGFNPPV-RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE---------VEFCVEMYYSV 71 (217)
Q Consensus 2 ~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~ 71 (217)
++++..++. ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +++|.++|++|
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 455665554 45899999999999999999999999999999999999999999987654 68899999999
Q ss_pred HhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 035645 72 CKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151 (217)
Q Consensus 72 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 151 (217)
.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNC 198 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (217)
||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-37 Score=239.27 Aligned_cols=188 Identities=17% Similarity=0.173 Sum_probs=164.6
Q ss_pred HHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC---------H
Q 035645 27 ESAKQMVNKMIKQGSDPDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM---------I 96 (217)
Q Consensus 27 ~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~ 96 (217)
..+..+.+++.+.+..+.+. .++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556667777777766554 6889999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 177 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.+.|+.||..||+.|+.+|++.|+.++|.++++.|.+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=3.4e-23 Score=163.55 Aligned_cols=205 Identities=12% Similarity=0.009 Sum_probs=142.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 345667777777777777777777777776542 2356677777777777777777777777776542 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHh
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPN--RPVYTTLITMCG 161 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~ 161 (217)
.+|.+.|++++|.++|+++.+.. +.+..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 77777777777777777776653 335666777777777777777777777777654 55565 567777777777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 162 RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++.+.++.|
T Consensus 528 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 7777777777777777654 33566777777777777777777777777766654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.9e-22 Score=159.33 Aligned_cols=207 Identities=7% Similarity=-0.073 Sum_probs=159.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------------------------------CCChhhHHHHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGS---------------------------------DPDLETFNSLIE 53 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---------------------------------~~~~~~~~~ll~ 53 (217)
+++..+|+.++..|.+.|++++|.++|+++.+.+. +.+..+++.++.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 35667777777777777777777777777664321 235667777778
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH
Q 035645 54 TICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD 133 (217)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 133 (217)
+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877642 2356788888888888888888888888887764 4567788888888888888888
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCCchHHHHH
Q 035645 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM----GLTPI--SRCFDLVTDGLKNCGKHDLAEKI 207 (217)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 207 (217)
|.++|+++.+.. +.+..+|+.++..+.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888887763 346788888888888999999999998888765 66677 67888899999999999999999
Q ss_pred HHHHhhhcC
Q 035645 208 EQLEVSLRS 216 (217)
Q Consensus 208 ~~~~~~~~~ 216 (217)
++.+.+..|
T Consensus 539 ~~~~~~~~p 547 (597)
T 2xpi_A 539 LNQGLLLST 547 (597)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhCC
Confidence 888877654
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=172.26 Aligned_cols=163 Identities=10% Similarity=0.097 Sum_probs=130.7
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHH---hcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVC---KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI 121 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (217)
..||+++|++|++.|++++|.++|++|. ..|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998875 4578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHHH
Q 035645 122 IKGAFRRGQF-DDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI------SRCFDLVTDG 194 (217)
Q Consensus 122 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 194 (217)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+.+..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999988655443 333333333 3344443 4566677777
Q ss_pred HHhcCC---------chHHHHHHHHHh
Q 035645 195 LKNCGK---------HDLAEKIEQLEV 212 (217)
Q Consensus 195 ~~~~~~---------~~~a~~~~~~~~ 212 (217)
|.+.+. .++-.+.|+...
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHH
Confidence 776552 245555555444
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=172.74 Aligned_cols=150 Identities=12% Similarity=0.114 Sum_probs=128.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIK---QGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
..|||++|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988864 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------HhHHHHHHHH
Q 035645 87 IPAVSKAGMI-DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN------RPVYTTLITM 159 (217)
Q Consensus 87 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~ 159 (217)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+-++. .+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~----Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA----VHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH----HGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH----HHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999984 7899999999999999999999999876665543333 3333 2234443 5566677777
Q ss_pred HhcCC
Q 035645 160 CGRGG 164 (217)
Q Consensus 160 ~~~~g 164 (217)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 87665
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=1.5e-18 Score=130.30 Aligned_cols=202 Identities=15% Similarity=0.110 Sum_probs=152.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
..+|+.+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|+..|++..+.. +.+..++..+..+
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence 3455555566666666666666666665542 2244555566666666666666666666665532 2246778888889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
+.+.|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|...|+++.+. .+.+..++..+...+...|++++|
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988864 335668888999999999999999999998876 345788899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 170 ANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+.++++.+.. +.+..++..+..++.+.|++++|.+.++.+.++.|
T Consensus 325 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 325 VRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999988753 34567888999999999999999999999887765
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=8.7e-19 Score=121.70 Aligned_cols=201 Identities=17% Similarity=0.089 Sum_probs=163.0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (217)
++++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 36788899999999999999999999999999864 3478889999999999999999999999998864 235678899
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 86 LIPAVSKA-----------GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 86 ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
+..++... |++++|...|++..+.+ +-+...+..+..++...|++++|...|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 99999999999998874 3456788899999999999999999999998886 6889999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
.+..++...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999998865 3456788899999999999999999987653
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=8.7e-18 Score=126.22 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 215 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 3334444444444444444444444331 1133444455555555555555555555554432 1133445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANY 172 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 172 (217)
.|++++|...+++..+.. +.+..++..+..++.+.|++++|...|+.+.+.. +.+..+|..+...+.+.|++++|.+.
T Consensus 216 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 216 ARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554432 2235566777777777777888877777777653 22466777777777788888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 173 LMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++++.+.. +.+..++..+...+.+.|++++|.+.++.+.+..|
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 87777654 44666777788888888888888888877766543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=4.9e-18 Score=129.72 Aligned_cols=204 Identities=15% Similarity=0.101 Sum_probs=175.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356778999999999999999999999998763 4478899999999999999999999999998864 33578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCc---ccHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCHhH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFP---SLYAPI------------IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV 152 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 152 (217)
.+|.+.|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...|+.+.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999999864 2233 555555 444899999999999999998763 447889
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 153 YTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 153 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+..+..++...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|.+.++.+.+..|
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998754 35678899999999999999999999999887654
No 11
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.9e-17 Score=119.91 Aligned_cols=200 Identities=11% Similarity=0.087 Sum_probs=164.1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHH
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYK 84 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (217)
-+|+..++..+...+...|+.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHH
Confidence 34567788889999999999999999999998876555 455666777899999999999999987 45778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH----HHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI----IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
.+..++.+.|++++|...|+++.+.+ |+.. ...+ +..+...|++++|..+|+++.+. .+.+...++.+..++
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACH 210 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 99999999999999999999998764 4432 2223 23344558999999999999887 456788999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH-HHHHHHHHhhhcC
Q 035645 161 GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL-AEKIEQLEVSLRS 216 (217)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~ 216 (217)
.+.|++++|.+.+++..+.. +-+..++..++..+...|+.++ +.++++.+.++.|
T Consensus 211 ~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999988765 3466788899999999999976 6789888887765
No 12
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=3.6e-17 Score=115.65 Aligned_cols=203 Identities=15% Similarity=0.076 Sum_probs=175.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678889999999999999999999998764 3467889999999999999999999999998764 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNP-FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 168 (217)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733334 45678888999999999999999999998763 3357889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 169 AANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
|...++...+.. +.+...+..+...+...|+.++|.++++.+.+..|
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999988754 35667888999999999999999999999887654
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=6.3e-17 Score=112.20 Aligned_cols=205 Identities=11% Similarity=-0.011 Sum_probs=175.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46778899999999999999999999998764 3467889999999999999999999999998763 336778899999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 89 AVSKA-GMIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 89 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...+.++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999988322333 5678889999999999999999999998763 33578899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 167 VEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++|.+.+++..+.....+...+..+...+...|+.+.|..+++.+.+..|
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999998765325667788888899999999999999998876654
No 14
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=9.2e-18 Score=117.91 Aligned_cols=204 Identities=12% Similarity=0.059 Sum_probs=160.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.+++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 355678888889999999999999999998864 3478889999999999999999999999998763 33678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
..+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998765 4467788899999999999999999999998763 346788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+|.+.+++..+.. +.+..++..+..++...|++++|.+.++...++.|
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999998764 34577899999999999999999999999887764
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.5e-17 Score=116.53 Aligned_cols=202 Identities=13% Similarity=0.087 Sum_probs=173.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--cc----hhhH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC--AD----VSTY 83 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 83 (217)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|++.+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678889999999999999999999999876 68889999999999999999999999998764211 11 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC------------------------C-CCCcccHHHHHHHHHhcCChHHHHHHH
Q 035645 84 KILIPAVSKAGMIDEAFRLLHNLVEDG------------------------H-NPFPSLYAPIIKGAFRRGQFDDAFCFF 138 (217)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------~-~~~~~~~~~ll~~~~~~g~~~~a~~~~ 138 (217)
..+...+...|++++|...|++..+.. . +.+...+..+...+...|++++|...+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999988732 1 223457888889999999999999999
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 139 SEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 139 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
++..... +.+..++..+...+...|++++|.+.+++..+.. +.+..++..+..++...|++++|.+.++...++.
T Consensus 163 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 163 TEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9998764 3468899999999999999999999999998865 3457789999999999999999999999988775
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.80 E-value=3.4e-17 Score=125.08 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=171.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch---hhH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV---STY 83 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (217)
+.+..+|..+..++...|++++|...|+++.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+... .+. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHH
Confidence 3467889999999999999999999999999875 33678899999999999999999999999987532 233 555
Q ss_pred HHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh
Q 035645 84 KIL------------IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP 151 (217)
Q Consensus 84 ~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 151 (217)
..+ ...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++|...|..+.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 555 444899999999999999998764 4567789999999999999999999999998763 44688
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hhhHHHH------------HHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI-SRCFDLV------------TDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++..+...+...|++++|.+.|+++.+.. |+ ...+..+ ...|.+.|++++|.+.++.+.+..|
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998754 43 3344444 8899999999999999999887654
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=8.1e-18 Score=125.35 Aligned_cols=203 Identities=17% Similarity=0.088 Sum_probs=151.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..|++..+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45567788888888888888888888887753 3367778888888888888888888888887653 234677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC------------------------------------------CC---CcccHHHHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGH------------------------------------------NP---FPSLYAPIIK 123 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------~~---~~~~~~~ll~ 123 (217)
+|...|++++|...|+++.+... .| +..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888887777654310 11 4556777778
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
.+...|++++|...|++..+.. +.+..+|..+..++...|++++|.+.|++..+.. +.+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888877653 3357788888888888888888888888877654 2346677888888888888888
Q ss_pred HHHHHHHHhhhc
Q 035645 204 AEKIEQLEVSLR 215 (217)
Q Consensus 204 a~~~~~~~~~~~ 215 (217)
|.+.++.+.++.
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888777654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.6e-17 Score=123.76 Aligned_cols=171 Identities=11% Similarity=0.005 Sum_probs=135.6
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 43 PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|++..+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 356678999999999999999999999998764 3467889999999999999999999999998875 44577899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCC------------------------------------------CC---CHhHHHHHH
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGH------------------------------------------PP---NRPVYTTLI 157 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~------------------------------------------~~---~~~~~~~li 157 (217)
..+...|++++|...++++.+... .| +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999988765310 01 456677777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..+...|++++|.+.+++..+.. +.+..++..+..+|...|++++|.+.++.+.++.|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777777654 33456777777777777777777777777766543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=7.9e-17 Score=117.96 Aligned_cols=204 Identities=13% Similarity=0.066 Sum_probs=123.6
Q ss_pred ChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 9 PVRGRDLLVQGLLNAG-YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
+...|..+...+...| ++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 166 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIG 166 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence 3445666666666666 6666666666666543 2245556666666666666666666666665542 12344555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCCCHhHHHHHHHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG--------HPPNRPVYTTLITM 159 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~ 159 (217)
..+...|++++|...+++..+.. +.+..++..+...+...|++++|...++...+.. .+.+..++..+...
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 66666666666666666666553 3344566666666666777777776666665421 12234566666666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 160 CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+...|++++|.+.+++..+.. +.+..++..+..++.+.|++++|.+.++...++.|
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 667777777777776666543 22445666666667777777777777666655543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=4.4e-16 Score=115.84 Aligned_cols=203 Identities=14% Similarity=0.087 Sum_probs=154.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35668888899999999999999999998864 3477788899999999999999999999988764 336778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-----------------------------------------------C---CcccH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHN-----------------------------------------------P---FPSLY 118 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------------------------~---~~~~~ 118 (217)
++...|++++|...++++.+.... | +..++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 999999999998888887764311 1 24556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 035645 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNC 198 (217)
Q Consensus 119 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (217)
..+...+.+.|++++|...+.++.... +.+..++..+...+...|++++|.+.+++..+.. +.+..++..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 667777777788888888877776652 3346677777777777888888888887777653 23456777777788888
Q ss_pred CCchHHHHHHHHHhhhc
Q 035645 199 GKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 199 ~~~~~a~~~~~~~~~~~ 215 (217)
|++++|.+.++.+.++.
T Consensus 299 g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQ 315 (368)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 88888888777776554
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.2e-16 Score=114.76 Aligned_cols=205 Identities=9% Similarity=-0.038 Sum_probs=175.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHH
Q 035645 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYK 84 (217)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (217)
+.+.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 456677888899999999999999999999998764 3466777888899999999999999999998753 33678899
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC
Q 035645 85 ILIPAVSKAG-MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG 163 (217)
Q Consensus 85 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 163 (217)
.+...+...| ++++|...|++..+.. +.+..+|..+...+...|++++|...+....+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999875 4456789999999999999999999999998763 33467788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 164 GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
|++++|.+.+++..+.. +.+..++..+...+...|++++|.+.++...+.
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999998765 345678999999999999999999999988765
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=5.7e-16 Score=114.50 Aligned_cols=204 Identities=14% Similarity=0.085 Sum_probs=174.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
++..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998864 3467899999999999999999999999998763 236688999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCcccHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHN--PFPSLYAPI------------IKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
++...|++++|...|++..+.... .+...+..+ ...+...|++++|...+..+.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999876410 234445444 578899999999999999998763 34678899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|.+.++...+..|
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99999999999999999999998764 45678899999999999999999999998877654
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=3.4e-16 Score=114.46 Aligned_cols=204 Identities=14% Similarity=0.045 Sum_probs=148.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...+......+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44566777888888888888888888887753 3366777888888888888888888888887753 335677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC------------------------------------------------CCCcccHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGH------------------------------------------------NPFPSLYAP 120 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 120 (217)
.+...|++++|...+++..+... +.+..++..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 88888888888888777665421 113345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGK 200 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (217)
+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|.+.+++..+.. +.+..++..+..++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 6667777888888888888776653 3356777777788888888888888888777654 2345677778888888888
Q ss_pred chHHHHHHHHHhhhcC
Q 035645 201 HDLAEKIEQLEVSLRS 216 (217)
Q Consensus 201 ~~~a~~~~~~~~~~~~ 216 (217)
+++|.+.++...+..|
T Consensus 256 ~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888877765543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=8e-16 Score=114.46 Aligned_cols=201 Identities=11% Similarity=0.017 Sum_probs=160.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC------------
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS------------ 76 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------ 76 (217)
+...|..+...+.+.|++++|...++++.+.. +.+..++..+..++...|++++|++.++++.+...
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 45667777778888888888888888777653 33666777777777777777777777776654211
Q ss_pred -----------------------------------Cc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH
Q 035645 77 -----------------------------------CA---DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY 118 (217)
Q Consensus 77 -----------------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (217)
.| +..++..+..++.+.|++++|...+++..+.. +.+..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 12 46778889999999999999999999998764 4456789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----------ChhhH
Q 035645 119 APIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP----------ISRCF 188 (217)
Q Consensus 119 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~ 188 (217)
..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|.+.|++..+..... ...+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 999999999999999999999998763 3467899999999999999999999999988643111 25789
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHh
Q 035645 189 DLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
..+..+|...|+.++|.+++++..
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999999999876443
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=6.7e-16 Score=111.78 Aligned_cols=193 Identities=13% Similarity=0.106 Sum_probs=160.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-chhhHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKILIPA 89 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~ 89 (217)
.....+..+|...|+++.|...++. .-+|+..++..+...+...++.++|++.++++...+..| +...+..+..+
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 3556678899999999999986654 245677888999999999999999999999998766545 45667777899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHH---HHHHHHHhcCCCH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVY---TTLITMCGRGGRF 166 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~ 166 (217)
+...|++++|.+.+++ +.+..++..+...+.+.|++++|...++.+.+.. |+.... ...+..+...|++
T Consensus 111 ~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHH
T ss_pred HHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHH
Confidence 9999999999999987 4567789999999999999999999999998873 453211 2334555567999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 167 VEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++|..+|+++.+.. +.+...++.+..++.+.|++++|++.++.+.+++|
T Consensus 183 ~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 183 QDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999874 56788899999999999999999999999988776
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=9e-16 Score=112.20 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=131.4
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...+++..+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567788889999999999999999998764 3367888899999999999999999999998874 446678888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC------------------------------------------------CCCHhHHHH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGH------------------------------------------------PPNRPVYTT 155 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 155 (217)
.+...|++++|...++.+..... +.+..++..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999998888765311 123456666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 156 LITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 156 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|.+.++.+.+..|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6777777777777777777777654 23456677777777777778877777777665543
No 27
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.73 E-value=2.5e-15 Score=101.29 Aligned_cols=167 Identities=17% Similarity=0.089 Sum_probs=127.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|..+...+.+.|++++|.+.|++..+.. +-+..++..+..++.+.|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 55678888888888888888888888887754 2366778888888888888888888888887653 234566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 168 (217)
.+...++++.|...+.+..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7888888888888888877654 3456677777888888888888888888877653 3356778888888888888888
Q ss_pred HHHHHHHHHHc
Q 035645 169 AANYLMEMTEM 179 (217)
Q Consensus 169 a~~~~~~~~~~ 179 (217)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888887764
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.73 E-value=6.7e-15 Score=108.75 Aligned_cols=205 Identities=13% Similarity=0.024 Sum_probs=168.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--cchhhHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC--ADVSTYKI 85 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 85 (217)
.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|++..+.... .+...+..
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 356789999999999999999999999998764 336788999999999999999999999999875320 23444444
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHH
Q 035645 86 L------------IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVY 153 (217)
Q Consensus 86 l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 153 (217)
+ ...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+....+.. +.+..++
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 191 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 4 578899999999999999998765 4567788999999999999999999999998763 4468899
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH------------HHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 154 TTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFD------------LVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 154 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..+...+...|++++|.+.+++..+... .+...+. .+...+.+.|++++|.+.++...+..|
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999987542 2222222 336778999999999999998877654
No 29
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.2e-16 Score=113.80 Aligned_cols=208 Identities=15% Similarity=0.155 Sum_probs=168.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc------C
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-------GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL------G 75 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 75 (217)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677889999999999999999999998873 22335667888999999999999999999988754 2
Q ss_pred C-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHhc---
Q 035645 76 S-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVED------GHNP-FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--- 144 (217)
Q Consensus 76 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 144 (217)
- +....++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|...+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 234577889999999999999999999988754 2122 3457888899999999999999999998764
Q ss_pred ---CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------------------------------------
Q 035645 145 ---GHPP-NRPVYTTLITMCGRGGRFVEAANYLMEMTEM----------------------------------------- 179 (217)
Q Consensus 145 ---~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------------------------- 179 (217)
+..| ...++..+...+...|++++|.+.+++..+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 2467888999999999999999999998752
Q ss_pred -------CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 180 -------GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 180 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.-+.+..++..+..+|.+.|++++|.+.++...++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1122446788999999999999999999999887754
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.6e-15 Score=105.18 Aligned_cols=170 Identities=12% Similarity=0.072 Sum_probs=150.2
Q ss_pred CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 035645 42 DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI 121 (217)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (217)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.+ +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677888999999999999999999999998753 3367889999999999999999999999999875 4456788899
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 035645 122 IKGAFRR-----------GQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDL 190 (217)
Q Consensus 122 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (217)
..++... |++++|...+++..+.. +-+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998863 2357889999999999999999999999999887 78888999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 191 VTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+..+|...|++++|.+.++...++.|
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988765
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=2.5e-15 Score=107.32 Aligned_cols=202 Identities=13% Similarity=-0.057 Sum_probs=163.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|++..+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 46678889999999999999999999998864 3368889999999999999999999999998753 236788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 168 (217)
++.+.|++++|...|+++.+.. |+.......+..+...|++++|...+....... +++...+ .++..+...++.++
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHH
Confidence 9999999999999999998763 444445555566677899999999998877652 3344444 46777788888899
Q ss_pred HHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 169 AANYLMEMTEMGLTP---ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 169 a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
|.+.+....+..... +..++..+..+|.+.|++++|.+.++...+..|
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 999998877543211 257888999999999999999999999988765
No 32
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=6e-14 Score=100.41 Aligned_cols=188 Identities=12% Similarity=-0.047 Sum_probs=87.8
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCcchhhH
Q 035645 12 GRDLLVQGLLN----AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGSCADVSTY 83 (217)
Q Consensus 12 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (217)
.+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 113 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGC 113 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHH
Confidence 34444444444 444444444444444433 34444444444444 444555555544444432 33444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhHHHH
Q 035645 84 KILIPAVSK----AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKGHPPNRPVYTT 155 (217)
Q Consensus 84 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (217)
..+...|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...|+...+.+ +...+..
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 187 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFN 187 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 444444444 455555555555444433 23334444444444 455555555555444432 2344444
Q ss_pred HHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCchHHHHHHHHHhhh
Q 035645 156 LITMCGR----GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 156 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 214 (217)
+...+.. .+++++|.+.+++..+.+. ...+..+...|.+ .+++++|.+.++...++
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 4444444 5555555555555444331 3344445555555 55555555555555444
No 33
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.6e-15 Score=116.31 Aligned_cols=202 Identities=12% Similarity=-0.013 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
..++..+...+...|++++|...++++.+... +...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 44455555556666666666666665554322 24445555555555555555555555554431 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC---------------------------------CCCcccHHHHHHHHHhcCChHHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGH---------------------------------NPFPSLYAPIIKGAFRRGQFDDAFC 136 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~ll~~~~~~g~~~~a~~ 136 (217)
+...|++++|...+++..+... +.+..++..+...+...|++++|..
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555444444321 2233444445555555555555555
Q ss_pred HHHHHHhcCCC-CC----HhHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 137 FFSEIKIKGHP-PN----RPVYTTLITMCGR---GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 137 ~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
.+..+...... ++ ..++..+...+.. .|++++|.+.++...+.. +.+..++..+..++.+.|++++|.+.+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55544432100 11 1245555555555 555555555555555432 223444555555555555665555555
Q ss_pred HHHhhhc
Q 035645 209 QLEVSLR 215 (217)
Q Consensus 209 ~~~~~~~ 215 (217)
+...++.
T Consensus 473 ~~a~~~~ 479 (514)
T 2gw1_A 473 EESADLA 479 (514)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 5555443
No 34
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=3.8e-14 Score=103.36 Aligned_cols=205 Identities=12% Similarity=0.013 Sum_probs=165.1
Q ss_pred CChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 035645 8 PPVRGRDLLVQGLL-------NAGYL-------ESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73 (217)
Q Consensus 8 ~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 73 (217)
.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|++..+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 35567777777765 35886 99999999999841233566899999999999999999999999988
Q ss_pred cCCCcc-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCCH
Q 035645 74 LGSCAD-VS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF-RRGQFDDAFCFFSEIKIKGHPPNR 150 (217)
Q Consensus 74 ~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~ 150 (217)
. .|+ .. +|..+...+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|..+|+...+.. +.+.
T Consensus 128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 203 (308)
T 2ond_A 128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 203 (308)
T ss_dssp S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCH
T ss_pred c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 4 454 33 79999999999999999999999999864 334445544433322 3799999999999988762 3467
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMG-LTP--ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++.+.+..|
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 899999999999999999999999999863 455 356788889999999999999999999887665
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=1.2e-14 Score=98.02 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=148.5
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
++..|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 67789999999999999999999999998864 2367889999999999999999999999998765 345667888889
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
.+...++++.|...+....... +.+...+..+...+.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988763 3467889999999999999999999999999865 3466789999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 035645 204 AEKIEQLEVSLRS 216 (217)
Q Consensus 204 a~~~~~~~~~~~~ 216 (217)
|.+.++...+++|
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999988765
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=6.3e-15 Score=105.20 Aligned_cols=204 Identities=9% Similarity=0.027 Sum_probs=135.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD--LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
...+..+...+...|++++|...+++..+.+..|+ ...|..+..++...|++++|+..|++..+.. +.+..++..+.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 115 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG 115 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 44677777777777777777777777776321111 2236677777777777777777777776643 22456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCC--
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR-- 165 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-- 165 (217)
..|...|++++|...|++..+.. +.+..++..+...+...+++++|...|+...+.. +.+...+..+...+...|+
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~ 193 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDT 193 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcch
Confidence 77777777777777777776653 3344555555524444557777777777776652 2235666666666666666
Q ss_pred -HHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 166 -FVEAANYLMEMTEMG-LTPI------SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 166 -~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+++|...+++..+.. -.|+ ..+|..+...|...|++++|.+.++...++.|
T Consensus 194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 667777777766421 1233 24677788888889999999999988887765
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=8.9e-14 Score=99.50 Aligned_cols=192 Identities=10% Similarity=-0.007 Sum_probs=169.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCcchhhHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGSCADVSTYK 84 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (217)
+..++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888999999999999999999999883 356788889999999 999999999999998865 678888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhHHHHH
Q 035645 85 ILIPAVSK----AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKGHPPNRPVYTTL 156 (217)
Q Consensus 85 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (217)
.+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 67788889999999 999999999999999875 56778888
Q ss_pred HHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCchHHHHHHHHHhhhc
Q 035645 157 ITMCGR----GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 157 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 215 (217)
...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.++...+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 888887 999999999999998865 45678889999999 999999999999887654
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-15 Score=116.46 Aligned_cols=167 Identities=15% Similarity=0.066 Sum_probs=144.4
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+..++..+...+...|++++|...|+++.+.. |+..++..+..++...|++++|...+++..+.. +.+..++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 56678888999999999999999999998864 348889999999999999999999999998875 446778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
.+...|++++|...++...+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998764 3357788999999999999999999999988754 3356788889999999999999
Q ss_pred HHHHHHHHhhhc
Q 035645 204 AEKIEQLEVSLR 215 (217)
Q Consensus 204 a~~~~~~~~~~~ 215 (217)
|.+.++.+.+..
T Consensus 391 A~~~~~~a~~~~ 402 (514)
T 2gw1_A 391 ALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999998887654
No 39
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.69 E-value=1e-14 Score=113.70 Aligned_cols=205 Identities=15% Similarity=0.047 Sum_probs=119.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
|+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|+..|++..+.. +.+..++..+.
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 351 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA 351 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344455555556666666666666666655542 2245556666666666666666666666665532 12345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CCCHhHHHHHHHHHhc
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH-----PPNRPVYTTLITMCGR 162 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~ 162 (217)
.++...|++++|...+++..+.. +.+..++..+...+...|++++|...|+.+.+... ......+......+..
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666665543 23344566666666666666666666666544310 0011122333344444
Q ss_pred C----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 163 G----------GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 163 ~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
. |++++|...+++..+.. +.+..++..+..+|.+.|++++|.+.++...++.|
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4 66666666666666543 23456778888888888888888888888777654
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=2e-14 Score=102.56 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=162.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc--hhhHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD--VSTYKIL 86 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 86 (217)
|...+......+...|++++|...|++..+... .+...+..+..++...|++++|+..+++..+....|+ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 345666778889999999999999999988642 3566899999999999999999999999987432222 2348899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998865 445678999999999999999999999998876 234567777777344445699
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---chHHHHHHHHHhhh
Q 035645 167 VEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGK---HDLAEKIEQLEVSL 214 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 214 (217)
++|.+.|++..+.. +.+...+..+..++...|+ +++|...++...+.
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 99999999998864 2346677888888888888 88898888877655
No 41
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=2.5e-16 Score=118.02 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC---------------
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG--------------- 75 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------- 75 (217)
.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+..
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 45666666666666666666666432 344555555555555666666655444443320
Q ss_pred -----------CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 76 -----------SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 76 -----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
-.|+..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+.++
T Consensus 107 lg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--- 174 (449)
T 1b89_A 107 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--- 174 (449)
T ss_dssp --CHHHHTTTTTCC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH---
T ss_pred hCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc---
Confidence 0134445555555555555555555555544 34666666666666666666666655
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 145 GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 145 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
.++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|++++|..+++....++
T Consensus 175 ---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 175 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred ---CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 1566677777777777777776443332 22222224457777777788888888877776654
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=6.1e-14 Score=98.99 Aligned_cols=176 Identities=10% Similarity=0.024 Sum_probs=149.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-chhhHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKIL 86 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 86 (217)
.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.+..| +...+..+
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 356788899999999999999999999998764 3377889999999999999999999999998733334 56788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 166 (217)
..++...|++++|...+++..+.. +.+..++..+...+...|++++|...+....+.. +.+...+..+...+...|++
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH
Confidence 999999999999999999998764 3456788899999999999999999999998763 34677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhH
Q 035645 167 VEAANYLMEMTEMGLTPISRCF 188 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~ 188 (217)
++|.+.++++.+.. |+...+
T Consensus 226 ~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 226 DTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHHHHHHHHHHHC--CCCHHH
Confidence 99999999998764 544433
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=4.2e-14 Score=99.12 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=148.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 132 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLG 132 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 357788899999999999999999999998764 3477889999999999999999999999998764 34677889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
..+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|...+....+.. +.+..++..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHH
Confidence 99999999999999999998764 4467788899999999999999999999998763 346788999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 035645 168 EAANYLMEMTEMG 180 (217)
Q Consensus 168 ~a~~~~~~~~~~~ 180 (217)
+|.+.+++..+..
T Consensus 211 ~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 211 KALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccC
Confidence 9999999998864
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=4.8e-14 Score=97.53 Aligned_cols=170 Identities=9% Similarity=-0.029 Sum_probs=146.4
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56678889999999999999999999998753 3357789999999999999999999999998764 445678889999
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCc
Q 035645 124 GAFRR-GQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKH 201 (217)
Q Consensus 124 ~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (217)
.+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999988433333 6788899999999999999999999998764 33577889999999999999
Q ss_pred hHHHHHHHHHhhhcC
Q 035645 202 DLAEKIEQLEVSLRS 216 (217)
Q Consensus 202 ~~a~~~~~~~~~~~~ 216 (217)
++|.+.++...+..|
T Consensus 164 ~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 164 GDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999998877654
No 45
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=9e-17 Score=120.36 Aligned_cols=160 Identities=15% Similarity=0.197 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (217)
+.|++++|.++++++ +++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 678899999999998 23459999999999999999999999653 577789999999999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 102 LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 87776654 3446667777777777777777776664 245556666666666666666666666543
Q ss_pred CCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 182 TPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
..|..++.++.+.|++++|.+.++++
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 24555555555555555555555444
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=4.6e-15 Score=114.45 Aligned_cols=196 Identities=11% Similarity=0.030 Sum_probs=156.9
Q ss_pred ChhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYL-ESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
+...|..+...+...|++ ++|.+.|++..+.. +-+...|..+..+|.+.|++++|++.|++..+. .|+..++..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 567788888888889999 99999999888764 235778888889999999999999999988874 46678888888
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc--------CChHHHHHHHHHHHhcCCC--C
Q 035645 88 PAVSKA---------GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR--------GQFDDAFCFFSEIKIKGHP--P 148 (217)
Q Consensus 88 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~--~ 148 (217)
.++... |++++|...|++..+.. +.+...|..+..++... |++++|...|+...+.... .
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 888888 88999999999888764 34567788888888888 8899999999988875210 3
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
+...|..+..++...|++++|.+.|++..+.. +-+...+..+..++...|++++|.+.+.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888888889999999999999998888754 2345567788888888888888876543
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=4.8e-14 Score=105.59 Aligned_cols=197 Identities=9% Similarity=0.015 Sum_probs=165.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCc-hhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE-VEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
...|+.+...+.+.|++++|+..+++.++.. +-+...|+.+..++...|+ +++|+..|++..+... -+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4568888899999999999999999999864 2367889999999999997 9999999999988643 36788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc-CCCHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR-GGRFV 167 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 167 (217)
++...|++++|+..|++..+.+ +-+..+|..+..++.+.|++++|+..++++.+... -+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999875 44678899999999999999999999999988743 367899999999988 66657
Q ss_pred HH-----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CchHHHHHHHHH
Q 035645 168 EA-----ANYLMEMTEMGLTPISRCFDLVTDGLKNCG--KHDLAEKIEQLE 211 (217)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~ 211 (217)
+| .+.+++..+.. +-+...|..+...+...| ++++|.+.++.+
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77 47888887754 235568888888888888 688888888765
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=5.5e-14 Score=105.27 Aligned_cols=203 Identities=9% Similarity=0.072 Sum_probs=169.4
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGY-LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
+...|+.+..++...|+ +++|+..|++.++.... +...|..+..++...|++++|+..|+++.+... -+...|..+.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg 207 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQ 207 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHH
Confidence 46779999999999997 99999999999986533 788999999999999999999999999988643 3678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCChHHH-----HHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR-RGQFDDA-----FCFFSEIKIKGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~ 161 (217)
.++.+.|++++|+..|+++++.+ +-+..+|+.+..++.+ .|..++| +..+.+..... +-+...|+.+...+.
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999875 4467889999999999 6665777 58888887763 335789999999999
Q ss_pred cCC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---------CchHHHHHHHHH-hhhcCC
Q 035645 162 RGG--RFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCG---------KHDLAEKIEQLE-VSLRSV 217 (217)
Q Consensus 162 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~v 217 (217)
..| ++++|.+.+.++ +.. ..+...+..+..+|.+.| ..++|.++++.+ .+++|+
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred ccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 888 689999999887 322 345667888999998874 258999999998 777763
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=4.2e-14 Score=94.82 Aligned_cols=166 Identities=17% Similarity=0.050 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456777788888888888888888877653 3366778888888888888888888888887653 3356777788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...+....+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877664 3456677777888888888888888888877663 33567777888888888888888
Q ss_pred HHHHHHHHHc
Q 035645 170 ANYLMEMTEM 179 (217)
Q Consensus 170 ~~~~~~~~~~ 179 (217)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877654
No 50
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.64 E-value=1.1e-13 Score=107.91 Aligned_cols=200 Identities=15% Similarity=0.032 Sum_probs=168.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
+|..+...+...|++++|...+++..+. .|+...+..+...+...|++++|+..|++..+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 5777778889999999999999999986 4568889999999999999999999999998764 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAAN 171 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 171 (217)
..|++++|...+++..+.+ +.+..++..+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|.+
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999998865 3456789999999999999999999999998773 3457789999999999999999999
Q ss_pred HHHHHHHcCCC-----CChhhHHHHHHHHHhc----------CCchHHHHHHHHHhhhcC
Q 035645 172 YLMEMTEMGLT-----PISRCFDLVTDGLKNC----------GKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 172 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~ 216 (217)
.+++..+.... .....+.....++... |++++|.+.++...+..|
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 99998754311 1122244556777777 999999999999887664
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1.4e-13 Score=92.20 Aligned_cols=168 Identities=17% Similarity=0.097 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (217)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778889999999999999999987653 3467888999999999999999999999998764 4456788889999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHH
Q 035645 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 204 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (217)
+...|++++|...++.+.... +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998763 4467889999999999999999999999998765 34577899999999999999999
Q ss_pred HHHHHHHhhhcC
Q 035645 205 EKIEQLEVSLRS 216 (217)
Q Consensus 205 ~~~~~~~~~~~~ 216 (217)
.+.++...+..|
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999998876643
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=8.9e-14 Score=111.83 Aligned_cols=166 Identities=10% Similarity=0.095 Sum_probs=120.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+..+|+.+...+.+.|++++|++.|++.++... -+..+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 356677888888888888888888888776532 256677778888888888888888888777643 124567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 168 (217)
+|.+.|++++|.+.|++..+.+ +-+..+|+.+..++...|++++|...|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 8888888888888888777654 3345677777777888888888888887777652 2246677777777777788877
Q ss_pred HHHHHHHHHH
Q 035645 169 AANYLMEMTE 178 (217)
Q Consensus 169 a~~~~~~~~~ 178 (217)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.8e-13 Score=97.61 Aligned_cols=189 Identities=9% Similarity=-0.046 Sum_probs=152.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSD---PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
....|++++|...++++.+.... .+..++..+...+...|++++|+..|++..+.. +.+..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34568899999999999986321 246678899999999999999999999998864 33678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
++|...|++..+.. +.+..++..+...+.+.|++++|...++.+.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999864 445788999999999999999999999999876 344444445555567779999999999888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 177 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.... +++... ..+...+...++.++|.+.++...+.
T Consensus 171 ~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 171 FEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred HhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 7654 334443 44777788888888999888776543
No 54
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.60 E-value=2.4e-14 Score=102.34 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=121.7
Q ss_pred hcCCHHHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc------CC-CcchhhHHHHH
Q 035645 22 NAGYLESAKQMVNKMIK-------QGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL------GS-CADVSTYKILI 87 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 87 (217)
..|++++|...+++..+ ...+....++..+...+...|++++|+..+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554443 121223456666777777777777777777766543 11 12345666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------C-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCC-CHhHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVED------G-HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK------GHPP-NRPVY 153 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~ 153 (217)
..|...|++++|...+++..+. . .+....++..+...+...|++++|...+.+..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777777766543 1 1122445666667777777777777777766543 1112 24566
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc------------------------------------------------CCCCCh
Q 035645 154 TTLITMCGRGGRFVEAANYLMEMTEM------------------------------------------------GLTPIS 185 (217)
Q Consensus 154 ~~li~~~~~~g~~~~a~~~~~~~~~~------------------------------------------------~~~~~~ 185 (217)
..+...+...|++++|.+.+++..+. ..+...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 66677777777777777777666542 112234
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 186 RCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
.++..+..+|...|++++|.++++...+.+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 578889999999999999999999887654
No 55
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=1.1e-13 Score=111.34 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=147.5
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+..+++.+..++.+.|++++|++.|++..+.. +-+..+++.+..+|.+.|++++|...|++..+.+ +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999998853 2257889999999999999999999999998875 345778999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
++...|++++|.+.|++..+.. +-+...|+.+..++...|++++|.+.|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998763 2357899999999999999999999999999865 2356789999999999999999
Q ss_pred HHHHHHHHhhhc
Q 035645 204 AEKIEQLEVSLR 215 (217)
Q Consensus 204 a~~~~~~~~~~~ 215 (217)
|.+.++...++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999998887653
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-13 Score=97.43 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=144.5
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----cccH
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH--NPF----PSLY 118 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 118 (217)
...+..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888999999999999999999998876 7889999999999999999999999999886531 112 4788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC------------------------CCC-CHhHHHHHHHHHhcCCCHHHHHHHH
Q 035645 119 APIIKGAFRRGQFDDAFCFFSEIKIKG------------------------HPP-NRPVYTTLITMCGRGGRFVEAANYL 173 (217)
Q Consensus 119 ~~ll~~~~~~g~~~~a~~~~~~~~~~~------------------------~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 173 (217)
..+...+...|++++|...|.+..... ..| +...+..+...+...|++++|.+.+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 899999999999999999999988732 122 3567888899999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 174 MEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++..+.. +.+..++..+..++...|++++|.+.++...+..|
T Consensus 163 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 163 TEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 9998765 34677899999999999999999999999887654
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=2.5e-13 Score=104.79 Aligned_cols=186 Identities=8% Similarity=-0.105 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCch-hHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV-EFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLH 104 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (217)
++++...+++..... +.+...+..+..++...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666777665542 34788899999999999999 99999999998763 2357889999999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC--------CCHH
Q 035645 105 NLVEDGHNPFPSLYAPIIKGAFRR---------GQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG--------GRFV 167 (217)
Q Consensus 105 ~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 167 (217)
+..+.. |+..++..+...+... |++++|...+++..+.. +.+...|..+..++... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999874 6678888999999999 99999999999998873 33688999999999888 9999
Q ss_pred HHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 168 EAANYLMEMTEMGLT--PISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
+|.+.|++..+.... -+...|..+..+|...|++++|.+.++...+++|
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999986421 3778899999999999999999999999988765
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=3.8e-13 Score=93.68 Aligned_cols=197 Identities=12% Similarity=-0.027 Sum_probs=152.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.|...+......+...|++++|...|++..+...+++...+..+..++...|++++|++.|++..+... .+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 456788889999999999999999999999876546888888899999999999999999999987532 3567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HhHHHHHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFP-------SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN---RPVYTTLI 157 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li 157 (217)
.++...|++++|...+++..+.. +.+. .+|..+-..+...|++++|...|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998764 2234 45777888889999999999999999875 444 46777777
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 158 TMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..+...| ...++++...+ ..+...|..... ...+.+++|...++...++.|
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCC
Confidence 7775443 34455555443 233444444433 345668999999999888765
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.7e-12 Score=90.35 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=101.7
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...|++..+.+ +.+..+|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566666777777777777777777777665433555566667777777777777777777777654 234556777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCH-------hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNR-------PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI---SRCFDLVTD 193 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 193 (217)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+.. |+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 7777777777777777776652 1233 446667777777777777777777776643 43 345666666
Q ss_pred HHHhcCCc
Q 035645 194 GLKNCGKH 201 (217)
Q Consensus 194 ~~~~~~~~ 201 (217)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 60
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=7.3e-12 Score=97.89 Aligned_cols=203 Identities=12% Similarity=-0.006 Sum_probs=161.0
Q ss_pred ChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 035645 9 PVRGRDLLVQGLLN-------AGYLE-------SAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 9 ~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (217)
+...|......+.+ .|+++ +|..++++..+.-.+-+...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 56677777777775 79987 89999999986323346788999999999999999999999999884
Q ss_pred CCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCHh
Q 035645 75 GSCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG-AFRRGQFDDAFCFFSEIKIKGHPPNRP 151 (217)
Q Consensus 75 ~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~ 151 (217)
.|+ ...|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+.. +.+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~ 426 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 426 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH
Confidence 454 2578999999999999999999999998763 2223333332222 346899999999999988762 33688
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC--hhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGL-TPI--SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
.|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+.++.+++.+.-
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999987642 332 3478788888889999999999998887654
No 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.52 E-value=8.7e-13 Score=95.48 Aligned_cols=203 Identities=11% Similarity=-0.069 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCchhHHHHHHHHHHhcC----CCc-ch
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GSDPD-LETFNSLIETICKSGEVEFCVEMYYSVCKLG----SCA-DV 80 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 80 (217)
..|......|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|+..|++..+.. -.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35788888899999999999999988653 32222 5688999999999999999999999886531 111 13
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-C----cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----
Q 035645 81 STYKILIPAVSKA-GMIDEAFRLLHNLVEDGHNP-F----PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR---- 150 (217)
Q Consensus 81 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 150 (217)
.+++.+..+|... |++++|...|++..+..... + ..++..+...+.+.|++++|...|+...........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788999999996 99999999999987542110 1 346888899999999999999999999876432221
Q ss_pred --hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH--hcCCchHHHHHHHHHhhhc
Q 035645 151 --PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS------RCFDLVTDGLK--NCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 151 --~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 215 (217)
..|..+..++...|++++|...|++..+.. |+. ..+..++.++. ..+++++|.+.++.+..++
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 156778888999999999999999877532 321 13445666665 4567888888887665554
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.8e-12 Score=97.17 Aligned_cols=203 Identities=9% Similarity=-0.014 Sum_probs=144.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCC---C-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCc-
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ--GSD---P-DLETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCA- 78 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~- 78 (217)
..+|..+...+...|+++.|...+++..+. ... + ...+++.+..+|...|++++|+..|++..+. +-.+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 356788888888889999988888887652 111 1 2346777888888889999999888877643 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC
Q 035645 79 DVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GH-NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPN 149 (217)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~ 149 (217)
...++..+..+|...|++++|...+++..+. +. +....++..+...+.+.|++++|...+++.... +-+..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1247788888888999999999888887762 22 233557788888888999999999888877543 11112
Q ss_pred HhHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 150 RPVYTTLITMCGRGGR---FVEAANYLMEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 150 ~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
...+..+...+...|+ +++|..++++. +..|+ ...+..+...|...|++++|.+.++...++.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3345667777888888 66666666544 33333 3467789999999999999999999887654
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=2.8e-11 Score=88.16 Aligned_cols=200 Identities=10% Similarity=0.007 Sum_probs=155.5
Q ss_pred hhhHHHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCch-------hHHHHH
Q 035645 10 VRGRDLLVQGLLNA----GYL----ESAKQMVNKMIKQGSDPDLETFNSLIETICK-------SGEV-------EFCVEM 67 (217)
Q Consensus 10 ~~~~~~ll~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~ 67 (217)
...|...+..-.+. ++. ++|..+|++..... +-+...|..+...+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666665443 233 78889999998753 3477788888877753 5776 899999
Q ss_pred HHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-cc-cHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 68 YYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF-PS-LYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
|++..+.-.+.+...|..++..+.+.|++++|..+|++..+. .|+ .. +|..+...+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999987312235568999999999999999999999999985 444 33 79999999999999999999999998764
Q ss_pred CCCCHhHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 146 HPPNRPVYTTLITMC-GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 146 ~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
+++...|....... ...|++++|.++|+...+.. +-+...+..++..+.+.|+.++|..+++...+.
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 23455555444332 23799999999999998753 235678889999999999999999999998874
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.48 E-value=8.1e-12 Score=79.03 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555666666666666666666665542 2244555556666666666666666666665543 223445555556666
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 127 RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
..|++++|...++.+.... +.+..++..+...+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666655442 22345555555556666666666666655544
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.47 E-value=1.3e-11 Score=87.72 Aligned_cols=190 Identities=9% Similarity=-0.004 Sum_probs=142.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--cchhhH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD---LETFNSLIETICKSGEVEFCVEMYYSVCKLGSC--ADVSTY 83 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 83 (217)
+...+-.....+.+.|++++|...|+++.+.... + ...+..+..++.+.|++++|+..|++..+.... ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566778888899999999999999999886422 3 567888999999999999999999999875321 124567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCcccH-----------------HHHHHHHHhcCChHHHHHHH
Q 035645 84 KILIPAVSK--------AGMIDEAFRLLHNLVEDGHNPFPSLY-----------------APIIKGAFRRGQFDDAFCFF 138 (217)
Q Consensus 84 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~g~~~~a~~~~ 138 (217)
..+..++.. .|++++|...|++..+.. +.+.... ..+...+.+.|++++|...|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 788888888 999999999999998764 2233333 45578889999999999999
Q ss_pred HHHHhcCCCC--CHhHHHHHHHHHhcC----------CCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCch
Q 035645 139 SEIKIKGHPP--NRPVYTTLITMCGRG----------GRFVEAANYLMEMTEMGLTPIS----RCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 202 (217)
+.+.+..... ....+..+..++... |++++|...|+++.+.. |+. .....+...+.+.++++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHHHHhh
Confidence 9998763221 245677777777765 89999999999998754 544 23444444444444443
No 66
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=1.6e-12 Score=92.79 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=136.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc------C
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ------GSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCKL------G 75 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 75 (217)
...++..+...+...|++++|...+++..+. +-.| ...++..+..++...|++++|++.|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4567889999999999999999999998754 2222 4567889999999999999999999988754 1
Q ss_pred -CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHhc---
Q 035645 76 -SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED------GHNP-FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--- 144 (217)
Q Consensus 76 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 144 (217)
.+....++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|...+.+..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234678889999999999999999999998764 1122 3457888999999999999999999988653
Q ss_pred ---------------------------------------------CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 145 ---------------------------------------------GHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 145 ---------------------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
..+....++..+...+...|++++|.+++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112245788889999999999999999988765
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=2.2e-11 Score=91.18 Aligned_cols=201 Identities=8% Similarity=0.023 Sum_probs=148.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCc-
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GS-DP-DLETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCA- 78 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~- 78 (217)
..++..+...+...|+++.|...+++..+. +. .+ ...+++.+..+|...|++++|++.|++..+. +..+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 456788888999999999999999887652 11 11 2456778888999999999999999887642 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC
Q 035645 79 DVSTYKILIPAVSKAGMIDEAFRLLHNLVE-----DGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG----HPPN 149 (217)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~ 149 (217)
...+++.+..+|...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+.. -+..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 235678888899999999999999998876 33 2235678888899999999999999999887642 1222
Q ss_pred HhHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 150 RPVYTTLITMCGRGGR---FVEAANYLMEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 150 ~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
...+..+...+...++ +++|...+++ .+..|+ ...+..+...|...|++++|.+.++...+.
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456666677778888 6666666654 333333 346778999999999999999999888764
No 68
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.44 E-value=2.7e-11 Score=76.57 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666666666666666665543 2245556666666666666666666666665543 224455666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
..|++++|...++++.+.. +.+..++..+...+.+.|++++|...+.++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666666543 233455666666666666666666666666543
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=6.3e-12 Score=91.06 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=138.7
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-------CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKL-------GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED------G 110 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 110 (217)
+..++..+...+...|++++|...|+++.+. ..+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998763 23335677889999999999999999999988754 2
Q ss_pred C-CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc---
Q 035645 111 H-NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK------GHPP-NRPVYTTLITMCGRGGRFVEAANYLMEMTEM--- 179 (217)
Q Consensus 111 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 179 (217)
- +....++..+...+...|++++|...+.+..+. +..| ...++..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223567888999999999999999999998764 2222 3567888999999999999999999998764
Q ss_pred ---CCCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 180 ---GLTP-ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 180 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
+..| ...++..+..+|...|++++|.+.++.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2123 3457889999999999999999999988764
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.2e-12 Score=97.36 Aligned_cols=203 Identities=16% Similarity=0.078 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCchhHHHHHHHHHHhc----CC-Ccchh
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDL----ETFNSLIETICKSGEVEFCVEMYYSVCKL----GS-CADVS 81 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 81 (217)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|+..+++..+. +. +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556777889999999999999999886322 33 47888899999999999999999988643 11 22456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCcccHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVED----G-HNPFPSLYAPIIKGAFRRGQ-----------------FDDAFCFFS 139 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~ 139 (217)
++..+...|...|++++|...+++..+. + ......++..+...+...|+ +++|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888999999999999999999987654 1 11224578888899999999 999999988
Q ss_pred HHHhc----CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 140 EIKIK----GHPP-NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLT-PI----SRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 140 ~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
+..+. +..+ ...++..+...+...|++++|.+.+++..+.... ++ ..++..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 1111 2357888889999999999999999988753211 11 2378889999999999999999998
Q ss_pred HHhhh
Q 035645 210 LEVSL 214 (217)
Q Consensus 210 ~~~~~ 214 (217)
...++
T Consensus 288 ~al~~ 292 (411)
T 4a1s_A 288 RTLAL 292 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 71
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=3.1e-11 Score=86.94 Aligned_cols=181 Identities=10% Similarity=0.043 Sum_probs=131.1
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 29 AKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS-CADVSTYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 29 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
+...|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777777655 45666667888889999999999999998866543 2366788889999999999999999999997
Q ss_pred hCCCCC-----CcccHHHHHHH--HHhcC--ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 108 EDGHNP-----FPSLYAPIIKG--AFRRG--QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 108 ~~~~~~-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
+. .| +..+...+..+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 24555666655 33334 899999999998765 34533444455578889999999999987664
Q ss_pred cC-----C----CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 179 MG-----L----TPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 179 ~~-----~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.. - +-|..+...+|......|+ +|.++++.+.++.|
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 31 0 2355566455555556676 88888888887765
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=4.7e-12 Score=95.54 Aligned_cols=206 Identities=16% Similarity=0.089 Sum_probs=146.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCChhhHHHHHHHHHhcCc-----------------hhHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GS-DPDLETFNSLIETICKSGE-----------------VEFCVEM 67 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~ 67 (217)
...+..+...+...|++++|...+++..+. +- +....++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456777888888888888888888877653 11 1134467778888888888 8888888
Q ss_pred HHHHHhc----CCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----cccHHHHHHHHHhcCChHHHHHH
Q 035645 68 YYSVCKL----GSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-PF----PSLYAPIIKGAFRRGQFDDAFCF 137 (217)
Q Consensus 68 ~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~ 137 (217)
+++..+. +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8776432 1111 2357778888888899999999888887653211 11 22677888888899999999998
Q ss_pred HHHHHhcCC--C---CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCchHHHHH
Q 035645 138 FSEIKIKGH--P---PNRPVYTTLITMCGRGGRFVEAANYLMEMTEM----GL-TPISRCFDLVTDGLKNCGKHDLAEKI 207 (217)
Q Consensus 138 ~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (217)
+++...... . ....++..+...+...|++++|.+.+++..+. +- .....++..+..+|...|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 887764311 0 11467778888888999999999998887642 11 11234777888889999999999999
Q ss_pred HHHHhhhc
Q 035645 208 EQLEVSLR 215 (217)
Q Consensus 208 ~~~~~~~~ 215 (217)
++...++.
T Consensus 366 ~~~al~~~ 373 (411)
T 4a1s_A 366 AEQHLQLA 373 (411)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88877653
No 73
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=7.4e-12 Score=94.01 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=152.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCc--------------------hhHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GSD-PDLETFNSLIETICKSGE--------------------VEFC 64 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~--------------------~~~a 64 (217)
..++..+...+...|++++|...+++..+. +.. ....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 456778888899999999999998887653 111 114477788888999999 9999
Q ss_pred HHHHHHHHhc----CCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----cccHHHHHHHHHhcCChHHH
Q 035645 65 VEMYYSVCKL----GSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-PF----PSLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 65 ~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a 134 (217)
.+.+++..+. +..| ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876532 1112 2356888889999999999999999887643111 11 23788888999999999999
Q ss_pred HHHHHHHHhc----CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCchHH
Q 035645 135 FCFFSEIKIK----GHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEM----GLTP-ISRCFDLVTDGLKNCGKHDLA 204 (217)
Q Consensus 135 ~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 204 (217)
...+.+.... +..+. ..++..+...+...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999887643 11111 467888889999999999999999887742 1111 145788899999999999999
Q ss_pred HHHHHHHhhh
Q 035645 205 EKIEQLEVSL 214 (217)
Q Consensus 205 ~~~~~~~~~~ 214 (217)
.+.++...++
T Consensus 327 ~~~~~~al~~ 336 (406)
T 3sf4_A 327 MHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=3.2e-11 Score=85.65 Aligned_cols=172 Identities=9% Similarity=-0.035 Sum_probs=135.4
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCccc
Q 035645 43 PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD---VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH--NPFPSL 117 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 117 (217)
.+...+-.+...+.+.|++++|+..|+++.+... .+ ...+..+..++.+.|++++|...|++..+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3566777888889999999999999999987532 23 57788899999999999999999999987631 112346
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCCHhHH-----------------HHHHHHHhcCCCHHHHHHH
Q 035645 118 YAPIIKGAFR--------RGQFDDAFCFFSEIKIKGHPPNRPVY-----------------TTLITMCGRGGRFVEAANY 172 (217)
Q Consensus 118 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~ 172 (217)
+..+..++.. .|++++|...|++..+... .+.... ..+...+...|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6777788888 9999999999999987632 123333 4567888999999999999
Q ss_pred HHHHHHcCCCC--ChhhHHHHHHHHHhc----------CCchHHHHHHHHHhhhcC
Q 035645 173 LMEMTEMGLTP--ISRCFDLVTDGLKNC----------GKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 173 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~ 216 (217)
|++..+..... ....+..+..+|... |++++|.+.++.+.+..|
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 99998754221 345778888888866 889999999998887654
No 75
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.9e-10 Score=88.35 Aligned_cols=206 Identities=12% Similarity=-0.047 Sum_probs=149.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC----
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ--------GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---- 75 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 75 (217)
.....||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987542 122245689999999999999999999999875421
Q ss_pred --CCc-chhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCcccHHHHHHH---HHhcCChHHHHHHHHHHHhcCCC
Q 035645 76 --SCA-DVSTYKILIPAVSKA--GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG---AFRRGQFDDAFCFFSEIKIKGHP 147 (217)
Q Consensus 76 --~~~-~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~ 147 (217)
..+ ...++.....++... +++++|...|++..+.+ +-+...+..+..+ +...++.++|.+.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 111 235566665566554 56899999999998764 2234445444444 455678889999999887763 2
Q ss_pred CCHhHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 148 PNRPVYTTLITMCG----RGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 148 ~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+..++..+...+. ..|++++|.+.+++..... +.+..++..+...|...|++++|.+.++...+..|
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 34566666554443 4567889999999888765 44567888999999999999999999999887654
No 76
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.40 E-value=1.1e-09 Score=84.80 Aligned_cols=189 Identities=13% Similarity=-0.016 Sum_probs=106.3
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCcch
Q 035645 9 PVRGRDLLVQGLLN----AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGSCADV 80 (217)
Q Consensus 9 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (217)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34445555555655 666777777777666553 44555666666666 666667777666665543 34
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhH
Q 035645 81 STYKILIPAVSK----AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKGHPPNRPV 152 (217)
Q Consensus 81 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 152 (217)
..+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555556655 566666666666666554 33445555555554 556666666666655543 4455
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCchHHHHHHHHHh
Q 035645 153 YTTLITMCGR----GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIEQLEV 212 (217)
Q Consensus 153 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 212 (217)
+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.++...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 5555555554 556666666665555443 23344444444443 455555555555443
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=2e-11 Score=88.36 Aligned_cols=177 Identities=10% Similarity=0.011 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCcc-hhhHHHHHHHHHhcCCHHHH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCAD-VSTYKILIPAVSKAGMIDEA 99 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a 99 (217)
++++|...|++. ...|...|++++|.+.|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 45678899999999999988653 22222 46899999999999999999
Q ss_pred HHHHHHHHhCCC---CC--CcccHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCC-C----HhHHHHHHHHHhcCCCHHH
Q 035645 100 FRLLHNLVEDGH---NP--FPSLYAPIIKGAFRR-GQFDDAFCFFSEIKIKGHPP-N----RPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 100 ~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 168 (217)
...+++..+... .+ ...+++.+..+|... |++++|...|++........ + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998775311 11 134788889999996 99999999999987541110 1 3578889999999999999
Q ss_pred HHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 169 AANYLMEMTEMGLTPIS------RCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 169 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
|...|++..+....... ..|..+..++...|++++|.+.++...++.|
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999875533222 1567788899999999999999998877654
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=6e-12 Score=91.87 Aligned_cols=206 Identities=13% Similarity=0.113 Sum_probs=128.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCc--------------------hhHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGS-DPD----LETFNSLIETICKSGE--------------------VEFC 64 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a 64 (217)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34566666677777777777777776554210 011 2356666777777777 7777
Q ss_pred HHHHHHHHhc----CCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CcccHHHHHHHHHhcCChHHH
Q 035645 65 VEMYYSVCKL----GSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-P----FPSLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 65 ~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~g~~~~a 134 (217)
.+.+++..+. +..+ ...++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777665321 1111 2345667777777778888888777776543100 1 122667777777888888888
Q ss_pred HHHHHHHHhc----CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCchHH
Q 035645 135 FCFFSEIKIK----GHPP-NRPVYTTLITMCGRGGRFVEAANYLMEMTEM----GLT-PISRCFDLVTDGLKNCGKHDLA 204 (217)
Q Consensus 135 ~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a 204 (217)
...+.+.... +..+ ...++..+...+...|++++|.+.+++..+. +-. ....++..+...|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8887776542 1111 1456667777778888888888888776542 111 1134667778888888888888
Q ss_pred HHHHHHHhhhc
Q 035645 205 EKIEQLEVSLR 215 (217)
Q Consensus 205 ~~~~~~~~~~~ 215 (217)
.+.++...++.
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 88887776553
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=5.8e-11 Score=88.99 Aligned_cols=196 Identities=11% Similarity=0.027 Sum_probs=149.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC--C----CcchhhHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQ----GSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCKLG--S----CADVSTYK 84 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 84 (217)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677899999999999999763 2112 34678889999999999999999999886431 1 11235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCHhHHH
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVEDGHN-P----FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GH-PPNRPVYT 154 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 154 (217)
.+..+|...|++++|...+++..+.... + ...++..+...|...|++++|...+.+..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999987753111 1 1247888999999999999999999998762 23 33467888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCC---chHHHHHHHHH
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEM----GLTPISRCFDLVTDGLKNCGK---HDLAEKIEQLE 211 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~ 211 (217)
.+...+...|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999988743 212223346778888888998 77777776554
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=3.2e-11 Score=97.01 Aligned_cols=173 Identities=10% Similarity=-0.069 Sum_probs=143.0
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 21 LNAGYLESAKQMVNKMI--------KQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 21 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
...|++++|.+.+++.. +. .+.+...+..+..++.+.|++++|++.|++..+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 68899999999999998 33 23466788899999999999999999999998753 2367889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANY 172 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 172 (217)
.|++++|...|++..+.+ +.+...|..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999875 4457788999999999999999 99999998763 33678999999999999999999999
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHHhcCC
Q 035645 173 LMEMTEMGLTPI-SRCFDLVTDGLKNCGK 200 (217)
Q Consensus 173 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 200 (217)
|++..+.+ |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99877653 54 4567777777766554
No 81
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=8.3e-12 Score=93.75 Aligned_cols=207 Identities=13% Similarity=0.078 Sum_probs=151.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCc
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD----LETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCA 78 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 78 (217)
.+....+......+...|++++|...|++..+.+.. + ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445566777888899999999999999998876322 3 356778888999999999999999887532 2122
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----cccHHHHHHHHHhcCC--------------------hH
Q 035645 79 -DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-PF----PSLYAPIIKGAFRRGQ--------------------FD 132 (217)
Q Consensus 79 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~--------------------~~ 132 (217)
...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457788888899999999999998887653100 11 3467788888888899 88
Q ss_pred HHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCCch
Q 035645 133 DAFCFFSEIKIK----GHPP-NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL-TPI----SRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 133 ~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 202 (217)
+|...+...... +..| ...++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876432 1111 135777888888889999999999988774211 111 237788888899999999
Q ss_pred HHHHHHHHHhhh
Q 035645 203 LAEKIEQLEVSL 214 (217)
Q Consensus 203 ~a~~~~~~~~~~ 214 (217)
+|.+.++...++
T Consensus 245 ~A~~~~~~al~~ 256 (406)
T 3sf4_A 245 TASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.39 E-value=3.9e-11 Score=82.45 Aligned_cols=175 Identities=11% Similarity=-0.016 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH----------------HHHHHHhcCchhHHHHHHHHHHh
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNS----------------LIETICKSGEVEFCVEMYYSVCK 73 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~ 73 (217)
...+-.....+.+.|++++|...|++..+... -+...|.. +..++.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556677899999999999999987531 14456666 88899999999999999999987
Q ss_pred cCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCHh
Q 035645 74 LGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ--FDDAFCFFSEIKIKGHPPNRP 151 (217)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~ 151 (217)
.. +-+...+..+..++...|++++|...|++..+.+ +.+..++..+..++...|. .+.+...+..... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 63 2367888999999999999999999999998875 4456778888877766654 3445555555432 222233
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLV 191 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (217)
.+.....++...|++++|...|++..+. .|+......+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 3444555666789999999999988874 4766544443
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.37 E-value=4.8e-11 Score=81.99 Aligned_cols=165 Identities=13% Similarity=0.024 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-chhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKI----------------LIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
..+......+.+.|++++|+..|++..+.. | +...+.. +..++.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445567788999999999999998753 4 3455666 88999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCChh
Q 035645 109 DGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR--FVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 109 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~ 186 (217)
.+ +-+...+..+..++...|++++|...|++..+.. +.+..++..+...+...|+ ...+...++.... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 75 4467789999999999999999999999998863 3357888888888766554 3445555554432 223333
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 187 CFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+.....++...|++++|...++...++.|
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 445566677788999999999999998876
No 84
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.37 E-value=2.3e-09 Score=83.03 Aligned_cols=188 Identities=12% Similarity=-0.064 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCcchh
Q 035645 10 VRGRDLLVQGLLN----AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGSCADVS 81 (217)
Q Consensus 10 ~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 81 (217)
...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|+..|++..+.| +..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4455556666666 667777777777766654 44555556666665 566777777776665543 344
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhHH
Q 035645 82 TYKILIPAVSK----AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKGHPPNRPVY 153 (217)
Q Consensus 82 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 153 (217)
.+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 222 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQ 222 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHH
Confidence 55555555555 556666666666666553 34455555555555 566666666666655543 33444
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCchHHHHHHHHHh
Q 035645 154 TTLITMCGR----GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIEQLEV 212 (217)
Q Consensus 154 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 212 (217)
..+...+.. .+++++|.++|++..+.| +...+..+...|.. .++.++|.+.++...
T Consensus 223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 445444443 455555655555555433 22334444444444 455555555555443
No 85
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=4.5e-10 Score=87.78 Aligned_cols=184 Identities=9% Similarity=0.006 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCchh-------HHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 27 ESAKQMVNKMIKQGSDPDLETFNSLIETICK-------SGEVE-------FCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 27 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
.++..+|++..... +-+...|......+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 47788999988752 3477888888888775 68887 899999999863233467889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH-HhcCCCHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFP--SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITM-CGRGGRFVEA 169 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a 169 (217)
.|++++|..+|++..+. .|+. .+|...+..+.+.|++++|..+|....+.. +.+...|...... +...|++++|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999986 3442 478889999999999999999999998762 2223333332222 3358999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 170 ANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
..+|+...+.. +-+...+..++..+.+.|+.++|..++++..+..
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999988754 2356788999999999999999999999988753
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.36 E-value=4.8e-10 Score=77.88 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=110.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch--hhHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSD-P-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV--STYK 84 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 84 (217)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778889999999999999999875322 1 1357788889999999999999999999875322111 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 85 ILIPAVSK------------------AGMIDEAFRLLHNLVEDGHNPFP-SLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 85 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
.+..++.+ .|++++|...|+++.+.. |+. .++....... .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHHH---
Confidence 44444443 467778888888777653 332 2221111000 0000000
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP--ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.....+...+.+.|++++|...|+++.+..... ....+..+..++.+.|+.++|.+.++.+...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 011233455556666666666666666542111 1234556666666666666666666655543
No 87
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.5e-11 Score=89.68 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCc-chhhHH
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPD----LETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCA-DVSTYK 84 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 84 (217)
......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +..| ...++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33444555555555555555555543211 1 234445555555555555555555544321 1111 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
.+...+...|++++|...+++..
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555555555555555443
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=3.6e-10 Score=78.50 Aligned_cols=151 Identities=11% Similarity=-0.046 Sum_probs=94.1
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc----c
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC-A-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS----L 117 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 117 (217)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++.+.. |+.. +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3455666677888999999999999999875322 1 13567788899999999999999999988764 3321 3
Q ss_pred HHHHHHHHHh------------------cCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 118 YAPIIKGAFR------------------RGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 118 ~~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
+..+..++.. .|++++|...|+.+.+. .|+ ...+...... ..+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH-
Confidence 4344444443 34566666666666554 122 1222111100 00000000
Q ss_pred cCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 179 MGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.....+...|.+.|++++|...++.+.+..|
T Consensus 148 -------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 148 -------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp -------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 0123567788899999999999998887643
No 89
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.3e-10 Score=86.96 Aligned_cols=204 Identities=11% Similarity=-0.004 Sum_probs=130.4
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH
Q 035645 10 VRGRDLLVQGLLN----AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85 (217)
Q Consensus 10 ~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (217)
...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|+..|++..+.. +-+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 3445444444443 356778888888877653 3466778888888999999999999999887753 224556666
Q ss_pred HHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 035645 86 LIPAVSKA-------------------GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH 146 (217)
Q Consensus 86 ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 146 (217)
+..+|... +..++|...+++..+.+ +.+..++..+...+...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 65555332 23566777777777654 44567888899999999999999999999887644
Q ss_pred CCCH--hHHHHHHH-HHhcCCCHHHHHHHHHHHHHcCC-----------------------CCChhhHHHHHHHHHhcCC
Q 035645 147 PPNR--PVYTTLIT-MCGRGGRFVEAANYLMEMTEMGL-----------------------TPISRCFDLVTDGLKNCGK 200 (217)
Q Consensus 147 ~~~~--~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~ 200 (217)
.|.. ..+..+.. .....|++++|...|.+..+... +.+..+|..+..+|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3322 12233322 23578999999998887764321 2356789999999999999
Q ss_pred chHHHHHHHHHhhhcC
Q 035645 201 HDLAEKIEQLEVSLRS 216 (217)
Q Consensus 201 ~~~a~~~~~~~~~~~~ 216 (217)
+++|.+.+++..++.+
T Consensus 446 ~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 446 MQQADEDSERGLESGS 461 (472)
T ss_dssp CC--------------
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999887754
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.33 E-value=1.1e-10 Score=92.05 Aligned_cols=154 Identities=11% Similarity=-0.008 Sum_probs=117.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHH
Q 035645 23 AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRL 102 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (217)
.|++++|.+.+++..+.. +-+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988753 3367889999999999999999999999998753 23578899999999999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC---CCHHHHHHHHHHHHHc
Q 035645 103 LHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG---GRFVEAANYLMEMTEM 179 (217)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 179 (217)
+++..+.+ +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 4456788999999999999999999999998763 33578888999999999 9999999999999886
Q ss_pred C
Q 035645 180 G 180 (217)
Q Consensus 180 ~ 180 (217)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 6
No 91
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=1.6e-10 Score=91.12 Aligned_cols=134 Identities=12% Similarity=-0.012 Sum_probs=113.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 99 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGH 99 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 46778889999999999999999999998864 3367788899999999999999999999998753 235678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CChHHHHHHHHHHHhcC
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR---GQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 145 (217)
++.+.|++++|.+.+++..+.+ +.+...+..+...+... |++++|.+.+++..+.+
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999999999999999988764 34567888888999999 99999999999988764
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.32 E-value=5.8e-10 Score=76.80 Aligned_cols=174 Identities=12% Similarity=0.037 Sum_probs=105.2
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcC----CHHHHHHHHH
Q 035645 29 AKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG----MIDEAFRLLH 104 (217)
Q Consensus 29 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~ 104 (217)
|.+.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455666665543 55666666666666777777777777766543 44555556666655 5 6777777777
Q ss_pred HHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-CCHhHHHHHHHHHhc----CCCHHHHHHHHHH
Q 035645 105 NLVEDGHNPFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKGHP-PNRPVYTTLITMCGR----GGRFVEAANYLME 175 (217)
Q Consensus 105 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~ 175 (217)
+..+.+ +...+..+-..|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|.++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 766554 34555556666655 66777777777776665421 014566666666665 5667777777776
Q ss_pred HHHcCCCCChhhHHHHHHHHHhc-C-----CchHHHHHHHHHhhh
Q 035645 176 MTEMGLTPISRCFDLVTDGLKNC-G-----KHDLAEKIEQLEVSL 214 (217)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~ 214 (217)
..+. ..+...+..|...|... | +.++|.+.+++..+.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 6654 12333455555555542 2 667777777666543
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.31 E-value=4.2e-11 Score=80.05 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
|...++...+.. +.+...+..+...+...|++++|...|++..+....+ +...+..+..++...|+.++|...++...
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555554431 1235555556666666666666666666655543222 23355556666666666666666655443
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.31 E-value=2.2e-10 Score=82.62 Aligned_cols=168 Identities=11% Similarity=0.022 Sum_probs=134.9
Q ss_pred CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH-HH
Q 035645 42 DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY-AP 120 (217)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 120 (217)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...+++..... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4456677788888999999999999999998753 2356788899999999999999999999887653 443322 22
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP-ISRCFDLVTDGLKNCG 199 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 199 (217)
....+...++.+.|...+++..... +.+...+..+...+...|++++|.+.+.++.+..... +...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667788888999999888763 3468899999999999999999999999999865322 2568899999999999
Q ss_pred CchHHHHHHHHHhh
Q 035645 200 KHDLAEKIEQLEVS 213 (217)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (217)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998877654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=5.4e-10 Score=80.51 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=130.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCc-----ch
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGS-DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCA-----DV 80 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 80 (217)
+++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 45566667888999999999999999999877654 236678889999999999999999999999874 46 35
Q ss_pred hhHHHHHHHH--Hh--cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC---------CC
Q 035645 81 STYKILIPAV--SK--AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG---------HP 147 (217)
Q Consensus 81 ~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~ 147 (217)
.+...+..++ .. .++.++|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.- -+
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 5555565553 22 34899999999998765 3543344455568999999999999999765430 13
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 148 PNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
.|+.+...+|......|+ +|.+++.++.+.. |+..
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp 287 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHA 287 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCCh
Confidence 356777677666666776 8899999998854 6554
No 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.29 E-value=8.8e-10 Score=92.69 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=115.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
..+|..+..++.+.|++++|.+.|.+. -|...|..++.++.+.|++++|++.+....+.. ++....+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 566777888888888888888887553 366677778888888888888888887665533 233233346666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
|.+.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 66666655433221 1 223344445555566666666666666643 2455566666666666666
Q ss_pred HHHHHHHHHc------------------------CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 170 ANYLMEMTEM------------------------GLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 170 ~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+.+++.... ++..+...+..++..|.+.|.+++|.++++....+++
T Consensus 1241 IEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1241 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 6555443211 1233555677888889999999999999988766543
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.2e-09 Score=81.34 Aligned_cols=203 Identities=16% Similarity=0.059 Sum_probs=147.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--c--ch
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQ----GSD--P-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC--A--DV 80 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~ 80 (217)
++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566778889999999999999987652 222 2 2345667888899999999999999988653221 1 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-ccHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCC---Hh
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP-SLYA-----PIIKGAFRRGQFDDAFCFFSEIKIKGHPPN---RP 151 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~ 151 (217)
.++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+.........++ ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 56778888899999999999999988754212211 1222 233447799999999999998765432211 23
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMTE----MGLTPIS-RCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.+..+...+...|++++|.+.++.... .|..++. .++..+..++...|+.++|.+.++....+
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566778889999999999999988764 2322233 36777888899999999999999877654
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.28 E-value=4.1e-11 Score=78.04 Aligned_cols=111 Identities=11% Similarity=-0.037 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (217)
..|++++|+..++...... +-+...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555544321 1122334445555555555555555555554432 1134455555555555555555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH
Q 035645 102 LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 135 (217)
.|++..+.+ +-+..+|..+...+.+.|++++|.
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Confidence 555555442 223344555555555555554433
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=2.1e-10 Score=82.79 Aligned_cols=165 Identities=10% Similarity=-0.028 Sum_probs=134.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHH-HHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYK-ILI 87 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll 87 (217)
+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 44567778888899999999999999998864 336778999999999999999999999998764 34544333 333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhcCCCH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP-NRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 166 (217)
..+...++.++|...+++..... +.+...+..+...+...|++++|...|..+....... +...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34667788888999999988875 4567789999999999999999999999998864321 267899999999999999
Q ss_pred HHHHHHHHHHH
Q 035645 167 VEAANYLMEMT 177 (217)
Q Consensus 167 ~~a~~~~~~~~ 177 (217)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99998887654
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.27 E-value=6.7e-11 Score=76.98 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=112.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 51 LIETICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
|...+...|++++|+..++..... .| +...+..+...|.+.|++++|.+.|++..+.+ +-+..+|..+..++.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344566778999999999988653 23 34567788999999999999999999999875 446788999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANY-LMEMTEMGLTPISRCFDLVTDGLKNCGK 200 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (217)
++++|...|+...+.. +-+..++..+...+.+.|+++++.+. +++..+.. +-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999998863 23578899999999999999876665 57777754 2345667777777766664
No 101
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=6.9e-10 Score=83.05 Aligned_cols=195 Identities=10% Similarity=-0.059 Sum_probs=145.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CC----ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----C-CCc-chhhHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGS-DP----DLETFNSLIETICKSGEVEFCVEMYYSVCKL----G-SCA-DVSTYK 84 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~ 84 (217)
....+...|++++|...+++..+.-. .+ ...++..+..+|...|+++.|+..+++..+. + ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456789999999999999876411 12 2457788999999999999999999988642 1 111 246788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCHhHHHH
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVED----GHN-PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPNRPVYTT 155 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ 155 (217)
.+..+|...|++++|...|++..+. +.. ....++..+...+...|++++|...+.+.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999987753 211 12346788889999999999999999998761 22333678888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhcCC---chHHHHHHHH
Q 035645 156 LITMCGRGGRFVEAANYLMEMTEMGL----TPISRCFDLVTDGLKNCGK---HDLAEKIEQL 210 (217)
Q Consensus 156 li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 210 (217)
+...+.+.|++++|.+.+++..+... +.....+..+...+...++ +++|...++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999886322 2223356666667777777 6777766654
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=2e-10 Score=76.67 Aligned_cols=165 Identities=11% Similarity=0.022 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...+......+.+.|++++|...+++..+.. +-+...+..+..++...|++++|+..|++..... |+...+......
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 3456777888999999999999999987653 3367889999999999999999999999987643 344333332212
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhcCCCHH
Q 035645 90 -VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP-NRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 90 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 167 (217)
+...+...+|...+++..+.. +.+...+..+..++...|++++|...|+.+.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 223233345788899888764 3457788999999999999999999999998874332 3568899999999999999
Q ss_pred HHHHHHHHHHH
Q 035645 168 EAANYLMEMTE 178 (217)
Q Consensus 168 ~a~~~~~~~~~ 178 (217)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987653
No 103
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=1.7e-09 Score=80.64 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=138.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----hhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCC--c-c
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGS-DPD----LETFNSLIETICKSGEVEFCVEMYYSVCKL----GSC--A-D 79 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 79 (217)
.++.+...+...|++++|...+++...... .++ ..++..+...+...|++++|...+++..+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 456677778888999999999888765211 111 233566777888899999999999887542 221 2 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHH
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN--P--FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYT 154 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 154 (217)
...+..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++.......++ ...+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 345667888888999999999999887754211 1 124567778888899999999999988765311111 11122
Q ss_pred -----HHHHHHhcCCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 155 -----TLITMCGRGGRFVEAANYLMEMTEMGLTP---ISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 155 -----~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|.+.++...+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344678899999999998876533221 122456778888899999999998877654
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=7.2e-09 Score=74.84 Aligned_cols=165 Identities=10% Similarity=0.013 Sum_probs=124.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcC-CCcch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-Cc----ccHH
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKLG-SCADV----STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP-FP----SLYA 119 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~ 119 (217)
..+..+...|++++|...+++..+.. ..|+. ..+..+...+...+++++|...+++..+..... +. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999999987632 22332 234456777777889999999999998753222 21 2688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc-----CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCCCC-hhhH
Q 035645 120 PIIKGAFRRGQFDDAFCFFSEIKIK-----GHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTE----MGLTPI-SRCF 188 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~ 188 (217)
.+..+|...|++++|...|.+..+. +..+. ..++..+...|.+.|++++|.+.+++..+ .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999998741 11222 34788899999999999999999988774 222222 5688
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHhhh
Q 035645 189 DLVTDGLKNCGK-HDLAEKIEQLEVSL 214 (217)
Q Consensus 189 ~~l~~~~~~~~~-~~~a~~~~~~~~~~ 214 (217)
..+..++.+.|+ +++|.+.++....+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999995 59999998887654
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.24 E-value=2.4e-09 Score=73.38 Aligned_cols=128 Identities=7% Similarity=-0.162 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667778889999999999998773 5688899999999999999999999999988763 34667888999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCc----------------ccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFP----------------SLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
...|++++|...|++..+.. +.+. .++..+..++.+.|++++|...|+...+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999988764 2222 56778888899999999999999988875
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=4.7e-10 Score=81.67 Aligned_cols=192 Identities=12% Similarity=0.026 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCc-ch
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GSDP-DLETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCA-DV 80 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 80 (217)
..|+.....|...|++++|...|.+..+. +-.+ -..+|+.+..+|.+.|++++|+..|++..+. |-.. -.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35777788888889999999999887653 2111 1347778888888999999999999887543 2111 13
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-H
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGH---NP--FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPN-R 150 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~ 150 (217)
.+++.+..+|.. |++++|...|++..+... .+ ...++..+...+.+.|++++|...|++.... +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 567788888888 999999999988765321 11 1356778888899999999999999887653 21111 2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCchHHHHH
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS------RCFDLVTDGLKNCGKHDLAEKI 207 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 207 (217)
..+..+..++...|++++|...|++.. . .|+. .....++.++ ..|+.+.+.++
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 356666777778899999999998887 3 2321 2344556655 56777766664
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=4.8e-09 Score=72.20 Aligned_cols=165 Identities=15% Similarity=0.057 Sum_probs=135.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----chhHHHHHHHHHHhcCCCcchhhH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG----EVEFCVEMYYSVCKLGSCADVSTY 83 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 83 (217)
-+...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|++.|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356778888999999999999999999998876 67778888888887 7 8999999999997754 56778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 84 KILIPAVSK----AGMIDEAFRLLHNLVEDGHN-PFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 84 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
..+...|.. .+++++|..+|++..+.+.. .+...+..|-..|.. .+++++|...|+...+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 888888877 88999999999999887621 126778888888888 88999999999999876 23455777
Q ss_pred HHHHHHhcC-C-----CHHHHHHHHHHHHHcCC
Q 035645 155 TLITMCGRG-G-----RFVEAANYLMEMTEMGL 181 (217)
Q Consensus 155 ~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 181 (217)
.|...|... | ++++|.++|+...+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777777643 3 89999999999988874
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=2.2e-10 Score=92.21 Aligned_cols=156 Identities=13% Similarity=-0.017 Sum_probs=134.3
Q ss_pred HhcCchhHHHHHHHHHH--------hcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 035645 56 CKSGEVEFCVEMYYSVC--------KLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR 127 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (217)
...|++++|++.+++.. +. .+.+...+..+..++.+.|++++|...|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999997 42 23456788899999999999999999999998864 4456789999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHH
Q 035645 128 RGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (217)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998763 2357889999999999999999 99999998865 33567899999999999999999999
Q ss_pred HHHHhhhcC
Q 035645 208 EQLEVSLRS 216 (217)
Q Consensus 208 ~~~~~~~~~ 216 (217)
++.+.++.|
T Consensus 557 ~~~al~l~P 565 (681)
T 2pzi_A 557 LDEVPPTSR 565 (681)
T ss_dssp HHTSCTTST
T ss_pred HHhhcccCc
Confidence 998887765
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.22 E-value=6.1e-10 Score=81.06 Aligned_cols=176 Identities=13% Similarity=-0.004 Sum_probs=132.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCc-chhhHHHHHHHHHhcCCHH
Q 035645 23 AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCA-DVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~ 97 (217)
.++++.|...|++. ...|...|++++|...|.+..+. +-.+ -..+|+.+..+|.+.|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 47788888887765 45778889999999999887543 1111 1457889999999999999
Q ss_pred HHHHHHHHHHhC----CCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhcCCCH
Q 035645 98 EAFRLLHNLVED----GHNPF--PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPP-NRPVYTTLITMCGRGGRF 166 (217)
Q Consensus 98 ~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~ 166 (217)
+|...|++..+. + .+. ..++..+...|.. |++++|...|++.... |..+ ...++..+...+.+.|++
T Consensus 94 ~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp GGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 999999886643 2 222 3578888888988 9999999999987653 1111 146788899999999999
Q ss_pred HHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 167 VEAANYLMEMTEM----GLTPIS-RCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 167 ~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
++|.+.|++..+. +..+.. ..+..+..++...|++++|.+.++... +.|
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 9999999988752 222222 367777788888899999999999877 544
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.22 E-value=4.4e-09 Score=72.05 Aligned_cols=145 Identities=11% Similarity=-0.000 Sum_probs=117.5
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
.+..+...+...|++++|+..|++.. .|+..++..+..++.+.|++++|...|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35566778889999999999998774 5678899999999999999999999999998765 445678999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCC--------------C-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 035645 127 RRGQFDDAFCFFSEIKIKGHP--------------P-NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLV 191 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (217)
..|++++|...|+...+.... | ....+..+..++...|++++|.+.|+...+.........+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 999999999999999875321 1 1278889999999999999999999999876543344444455
Q ss_pred HHHHH
Q 035645 192 TDGLK 196 (217)
Q Consensus 192 ~~~~~ 196 (217)
+..+.
T Consensus 163 ~~~~~ 167 (213)
T 1hh8_A 163 MECVW 167 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 111
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.17 E-value=7.4e-09 Score=87.30 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=109.9
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+...++.. +++...+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 4667777888888888888888888553 366677778888888888888888888776654 33334445778
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|+++.
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHH
Confidence 888888877544432 1 345666777888888999999999999874 378899999999999999
Q ss_pred HHHHHHHHhhh
Q 035645 204 AEKIEQLEVSL 214 (217)
Q Consensus 204 a~~~~~~~~~~ 214 (217)
|.+.+++..+.
T Consensus 1240 AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1240 AVDGARKANST 1250 (1630)
T ss_pred HHHHHHHhCCH
Confidence 99988776543
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.17 E-value=3.2e-09 Score=76.68 Aligned_cols=164 Identities=9% Similarity=0.054 Sum_probs=124.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCh----hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-cc----hhhHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQG-SDPDL----ETFNSLIETICKSGEVEFCVEMYYSVCKLGSC-AD----VSTYK 84 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 84 (217)
..+..+...|++++|..++++..+.. ..|+. ..+..+...+...+++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999999988742 22232 13335677777888999999999999874222 22 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HhHH
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVED-----GHNP-FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPN-RPVY 153 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~ 153 (217)
.+..+|...|++++|...|++..+. +..+ ...++..+...|.+.|++++|...+.+..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998741 1112 2347888999999999999999999987642 22222 5788
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHH
Q 035645 154 TTLITMCGRGGR-FVEAANYLMEMTE 178 (217)
Q Consensus 154 ~~li~~~~~~g~-~~~a~~~~~~~~~ 178 (217)
..+..++...|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999994 6999999988763
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=2e-08 Score=72.44 Aligned_cols=167 Identities=11% Similarity=0.057 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--cc
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD-----VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN---PF--PS 116 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 116 (217)
.+...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445667788899999999999988876432211 123445666778889999999999998754221 11 34
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHh---c-CCCC--CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCC-Ch
Q 035645 117 LYAPIIKGAFRRGQFDDAFCFFSEIKI---K-GHPP--NRPVYTTLITMCGRGGRFVEAANYLMEMTEMG----LTP-IS 185 (217)
Q Consensus 117 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~ 185 (217)
+|+.+...|...|++++|...|.+..+ . +-.+ ...++..+...|...|++++|.+.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998863 2 1111 12588899999999999999999999877432 111 15
Q ss_pred hhHHHHHHHHHhcCCchHH-HHHHHHHhh
Q 035645 186 RCFDLVTDGLKNCGKHDLA-EKIEQLEVS 213 (217)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 213 (217)
.+|..+..+|.+.|+.++| ...++....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777776654
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.14 E-value=6.2e-10 Score=80.05 Aligned_cols=195 Identities=10% Similarity=-0.080 Sum_probs=131.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356778889999999999999999999998863 2378889999999999999999999999998753 33577889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHH
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFV 167 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 167 (217)
.++...|++++|...|++..+.+. .+...+...+....+.. ++. -+..........+......+.. + ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIA---KKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHH---HHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHH---HHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 999999999999999999876431 11111211222222111 111 1222223333444444444433 2 268888
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHHHHhc-CCchHHHHHHHHHhh
Q 035645 168 EAANYLMEMTEMGLTPISR-CFDLVTDGLKNC-GKHDLAEKIEQLEVS 213 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 213 (217)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|..+.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 998888776654 45433 333444444444 668889999887654
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.12 E-value=9.9e-09 Score=74.10 Aligned_cols=165 Identities=7% Similarity=-0.018 Sum_probs=123.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC---cc--hhh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDL-----ETFNSLIETICKSGEVEFCVEMYYSVCKLGSC---AD--VST 82 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 82 (217)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 445677788999999999999988775322111 22344666678889999999999998753211 11 458
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----cccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-Hh
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVED-GHNPF-----PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPN-RP 151 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 151 (217)
++.+...|...|++++|...|++..+. ...|+ ..++..+...|.+.|++++|...+++..+. +.... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 899999999999999999999998732 00112 258889999999999999999999987643 11111 57
Q ss_pred HHHHHHHHHhcCCCHHHH-HHHHHHHH
Q 035645 152 VYTTLITMCGRGGRFVEA-ANYLMEMT 177 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a-~~~~~~~~ 177 (217)
+|..+...+...|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 888999999999999999 77777655
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=3.5e-08 Score=71.50 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=132.8
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCChhhHHHHHHHH----Hhc---CchhHHHHHHHHHHhcCCCcchhh
Q 035645 12 GRDLLVQGLLNAG--YLESAKQMVNKMIKQGSDPDLETFNSLIETI----CKS---GEVEFCVEMYYSVCKLGSCADVST 82 (217)
Q Consensus 12 ~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 82 (217)
.|+.--..+...| +++++++.++.+.....+ +..+|+.--..+ ... +++++++.+++.+.+.. +.+..+
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~a 146 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHV 146 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 3666556666666 777777777777765432 455555433333 333 56777777777776653 235666
Q ss_pred HHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC------hHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 83 YKILIPAVSKAGMID--EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ------FDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
|+.-.-++.+.+.++ ++++.++++.+.+ +-+..+|+.-...+.+.+. ++++++.+..+.... +-|...|+
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~ 224 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWN 224 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHH
Confidence 666666666677776 7777777777665 3355666666555666665 777777777776653 33677777
Q ss_pred HHHHHHhcCCCHHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh-hcCC
Q 035645 155 TLITMCGRGGRFVE-AANYLMEMTEMG--LTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS-LRSV 217 (217)
Q Consensus 155 ~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~v 217 (217)
.+-..+.+.|+... +..+..++.+.+ -..++..+..+..+|.+.|+.++|.++++.+.+ .+|+
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 77777766666433 444555554432 134667888999999999999999999999886 6774
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.11 E-value=7.2e-09 Score=67.91 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
.|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|+..+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555555555555555555432 1244455555555555555555555555554432 123444555555555
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 035645 92 KAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (217)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555555443
No 118
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.10 E-value=1.9e-08 Score=80.52 Aligned_cols=206 Identities=6% Similarity=-0.123 Sum_probs=157.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCC---------Cc
Q 035645 9 PVRGRDLLVQGLLNAGYLESAK-QMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGS---------CA 78 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 78 (217)
+...|-..+..+.+.|+.+.|. .+|++.... .+.+...|...+...-+.|++++|.++|+++..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4566777777788889999996 999999864 344666777888888899999999999999876310 13
Q ss_pred ------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CChHHHHHHHHHHHhcC
Q 035645 79 ------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR-GQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 79 ------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~ 145 (217)
...+|...+....+.|..+.|..+|.+..+.-.......|...+..-.+. ++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 23468888888888999999999999998761122334454433333344 4599999999998876
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP--ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+-+...|...++.....|+.+.|..+|+........+ ....|...+.-=.+.|+.+.+.++.+++.+..|
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44467778888888888999999999999988765322 345788888888899999999999999987654
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.09 E-value=8.6e-09 Score=67.53 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (217)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445666667777777777777777776642 2245666777777777777777777777776653 3345566667777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHH--HHHHHhcCCCHHHHHHHHHHHH
Q 035645 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTT--LITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~~ 177 (217)
+...|++++|...+.+...... .+...+.. ....+...|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777665421 23334422 2333556677777777666544
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.09 E-value=2e-09 Score=73.06 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=107.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCc-chhhHHHHHHHHHhcCC
Q 035645 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL----GSCA-DVSTYKILIPAVSKAGM 95 (217)
Q Consensus 21 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~ 95 (217)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +..+ ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966555432 2235667888888889999999999999887642 2222 34667788888888999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CcccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHhHHHHHHHHHhcCC
Q 035645 96 IDEAFRLLHNLVED----GHNP--FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPP-NRPVYTTLITMCGRGG 164 (217)
Q Consensus 96 ~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g 164 (217)
+++|...+++..+. +-.+ ...++..+...+...|++++|...+.+.... +..+ -..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999888876643 2111 1345677778888888999988888877542 1111 1234567777788888
Q ss_pred CHHHHHHHHHHHHHc
Q 035645 165 RFVEAANYLMEMTEM 179 (217)
Q Consensus 165 ~~~~a~~~~~~~~~~ 179 (217)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888766553
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.09 E-value=2.9e-09 Score=72.28 Aligned_cols=158 Identities=12% Similarity=-0.017 Sum_probs=110.2
Q ss_pred HhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCcccHHHHHHHHHhcCC
Q 035645 56 CKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE----DGHN-PFPSLYAPIIKGAFRRGQ 130 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~g~ 130 (217)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+ .+.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888998865555432 223567788888889999999999999888765 1212 234577788888899999
Q ss_pred hHHHHHHHHHHHhc----CCCC--CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcC
Q 035645 131 FDDAFCFFSEIKIK----GHPP--NRPVYTTLITMCGRGGRFVEAANYLMEMTEM----GLT-PISRCFDLVTDGLKNCG 199 (217)
Q Consensus 131 ~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~ 199 (217)
+++|...+.+.... +-.| ....+..+...+...|++++|.+.+++..+. +-. .-..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999988876543 2121 2456777888888899999999998887632 211 11234678888888999
Q ss_pred CchHHHHHHHHHhhh
Q 035645 200 KHDLAEKIEQLEVSL 214 (217)
Q Consensus 200 ~~~~a~~~~~~~~~~ 214 (217)
++++|.+.++...++
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999888776654
No 122
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.08 E-value=1.5e-07 Score=72.24 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=137.9
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----CchhHHHHHHHHHHhcCCCcchh
Q 035645 9 PVRGRDLLVQGLLNAG---YLESAKQMVNKMIKQGSDPDLETFNSLIETICKS----GEVEFCVEMYYSVCKLGSCADVS 81 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 81 (217)
+...+..+...|...| +.++|++.|++..+.| .++...+..+...|... +++++|++.|++.. . -+..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 3447778888888888 8889999999988876 34555556666677554 68889999998886 2 3556
Q ss_pred hHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCCHhHH
Q 035645 82 TYKILIPA-V--SKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG-----QFDDAFCFFSEIKIKGHPPNRPVY 153 (217)
Q Consensus 82 ~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~ 153 (217)
.+..+... + ...+++++|..+|++..+.| +...+..+-..|. .| ++++|...|+... . -+...+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHH
Confidence 66666666 3 45788999999999988776 5566666766666 55 8999999998776 3 356677
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCchHHHHHHHHHhhh
Q 035645 154 TTLITMCGR----GGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 154 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 214 (217)
..|...|.. ..++++|.++|++..+.|. ......|...|.. ..+.++|...++...+.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 777777765 3488999999988887663 3345566666653 45788888888776654
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=1.1e-08 Score=63.53 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555556666666666666666655432 2244455555555556666666666665555432 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 035645 91 SKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~ 109 (217)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.07 E-value=3.1e-09 Score=75.62 Aligned_cols=189 Identities=7% Similarity=-0.090 Sum_probs=142.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHH-------HHHHHhcCchhHHHHHHHHHHhcCCCcc---------------
Q 035645 22 NAGYLESAKQMVNKMIKQGSDPDLETFNSL-------IETICKSGEVEFCVEMYYSVCKLGSCAD--------------- 79 (217)
Q Consensus 22 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 79 (217)
..++...|.+.|.++.+... -....|..+ ...+...++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 68999999999999998643 266788877 5666666677777766666544 2221
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--H
Q 035645 80 -------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN--R 150 (217)
Q Consensus 80 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~ 150 (217)
....-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|....... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233456778889999999999999887654 433356666678999999999999998655432 111 2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI--SRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
..+..+..++.+.|++++|.+.|++.......|. .........++.+.|+.++|..+|+.+.+.+|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4677888999999999999999999875433253 34677788899999999999999999988776
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-08 Score=64.35 Aligned_cols=118 Identities=9% Similarity=0.016 Sum_probs=71.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
.+...|..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345556667777777777777777777766543 2255666666667777777777777777666542 22455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
.++.+.|++++|...|++..+.. +.+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 66677777777777776666542 22233444444444433
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.07 E-value=1.4e-08 Score=62.94 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444555555555555555555554432 1233444444445555555555555555444332 22233444444444
Q ss_pred HhcCChHHHHHHHHHHHh
Q 035645 126 FRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~~ 143 (217)
...|++++|...++.+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444433
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.06 E-value=1.1e-08 Score=63.99 Aligned_cols=119 Identities=11% Similarity=0.020 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITM 159 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 159 (217)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+....... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3444555555555555555555555555432 2234455555555566666666666666555442 2234555556666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCc
Q 035645 160 CGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKH 201 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (217)
+...|++++|.+.+++..+.. +.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 666666666666666655543 12344455555555555543
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=1.1e-08 Score=64.37 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
|......+.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 4444444444555555555554444432 1234444444444444444555444444444432 1123444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 035645 93 AGMIDEAFRLLHNLVE 108 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~ 108 (217)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.05 E-value=5.9e-09 Score=65.28 Aligned_cols=117 Identities=13% Similarity=0.016 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555555566666666665555432 2244455555555555555555555555554432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
+...|++++|...|++..+.. +.+...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555554432 122334444444444443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.05 E-value=3.6e-08 Score=64.02 Aligned_cols=96 Identities=13% Similarity=-0.018 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
.+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+.+ +.+...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44445555555555555555555555432 1234455555555555555555555555555443 223445555555555
Q ss_pred hcCChHHHHHHHHHHHhc
Q 035645 127 RRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~ 144 (217)
..|++++|...|+...+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-08 Score=63.34 Aligned_cols=98 Identities=12% Similarity=0.005 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITM 159 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 159 (217)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444455555555555555555555554432 2233445555555555555555555555554432 2234555555555
Q ss_pred HhcCCCHHHHHHHHHHHHHc
Q 035645 160 CGRGGRFVEAANYLMEMTEM 179 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~ 179 (217)
+...|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55556666666666555543
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=2.2e-08 Score=62.97 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
.+......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 44445555555566666666665555432 1244555555555555555555555555555443 223445555555555
Q ss_pred hcCChHHHHHHHHHHHhc
Q 035645 127 RRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~ 144 (217)
..|++++|...|+...+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555543
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=1.4e-08 Score=74.81 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD--------------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 110 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (217)
...+..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44455555555555666666666655554321110 3556666666666666666666666666543
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH-HHHHHHH
Q 035645 111 HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA-ANYLMEM 176 (217)
Q Consensus 111 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 176 (217)
+.+..+|..+..++...|++++|...|++..+.. +.+...+..+..++...|+.+++ ...++.|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345556666666666666666666666665542 22455566666666666666655 3344444
No 134
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.00 E-value=1.7e-07 Score=71.83 Aligned_cols=191 Identities=9% Similarity=-0.026 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---chhHHHHHHHHHHhcCCCcchhhHHHHH
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG---EVEFCVEMYYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (217)
..+..+...|...+.++++......+.+.-...++..+..+...|.+.| +.++|++.|++..+.|. ++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 3445555666666644443333222222111223447888888888899 89999999999988763 3555556677
Q ss_pred HHHHhc----CCHHHHHHHHHHHHhCCCCCCcccHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 88 PAVSKA----GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG-A--FRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 88 ~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
..|... +++++|..+|++.. . .+...+..+-.. + ...+++++|...|++..+.| +...+..+...|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 777655 78999999999987 3 355666666666 4 56899999999999998876 567777777777
Q ss_pred hcCC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCchHHHHHHHHHhhh
Q 035645 161 GRGG-----RFVEAANYLMEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 161 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 214 (217)
. .| ++++|.++|++.. . -+......|...|.. ..+.++|.+.+++..+.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 6 44 9999999998776 3 355667777777766 34899999999887654
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.00 E-value=1.7e-08 Score=67.20 Aligned_cols=118 Identities=7% Similarity=0.023 Sum_probs=50.1
Q ss_pred cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCh--HHH
Q 035645 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG-AFRRGQF--DDA 134 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~~a 134 (217)
.|++++|+..+++..+.. +.+...+..+...|...|++++|...|++..+.+ +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444443321 1233444444444444455555544444444332 1223333444444 3444444 555
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
...+....... +.+...+..+...+...|++++|...|++..+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55554444431 11234444444445555555555555554444
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.99 E-value=2.1e-08 Score=73.96 Aligned_cols=142 Identities=8% Similarity=-0.114 Sum_probs=83.8
Q ss_pred CchhHHHHHHHHHHhcCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHHH
Q 035645 59 GEVEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF--------------PSLYAPIIK 123 (217)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~ 123 (217)
+++++|+..|+...+. .| +...+..+...+.+.|++++|...|++..+...... ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4455555554443321 12 345566666666666777777777766665431111 256666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
++.+.|++++|...+....+.. +.+...+..+..++...|++++|...|++..+.. +-+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777776666552 2345666666666666777777777776666543 2234556666666666666666
Q ss_pred H
Q 035645 204 A 204 (217)
Q Consensus 204 a 204 (217)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 6
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.99 E-value=6.5e-09 Score=69.20 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=98.9
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH-HHhcCCH--
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA-VSKAGMI-- 96 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~-- 96 (217)
+...|++++|...+++..+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345788999999999988764 3477889999999999999999999999998753 2356777788888 7789998
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
++|...+++..+.+ +.+...+..+...+...|++++|...|....+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998874 345678888999999999999999999999876
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=3.1e-08 Score=64.29 Aligned_cols=104 Identities=11% Similarity=-0.091 Sum_probs=85.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 79 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
+...+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|...|++..... +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34677788888899999999999999988775 4467788888899999999999999999988763 235778888899
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 159 MCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
++...|++++|...|++..+.. |+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999888754 5543
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=4.1e-09 Score=68.30 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 66 EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
..|+++.+.. +.+...+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|...|+......
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455665532 2255677888899999999999999999998775 4467788889999999999999999999998763
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
+.+...+..+..++...|++++|.+.|+...+..
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3357888899999999999999999999988643
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.93 E-value=3e-09 Score=72.26 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-cc--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSC-AD--------------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 111 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 111 (217)
.+..+...+...|++++|+..|++..+.... |+ ..++..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444555555555555555555555442111 00 1344444444444455555554444444432
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035645 112 NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 112 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 143 (217)
+.+..++..+..++...|++++|...|+...+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22333444444444444444444444444443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=1.2e-08 Score=66.09 Aligned_cols=99 Identities=17% Similarity=0.084 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|++....+ +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 44566667777888888888888888877653 2356677777788888888888888888877664 335567777788
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 035645 124 GAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~ 144 (217)
++...|++++|...|+...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877654
No 142
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.8e-07 Score=70.90 Aligned_cols=197 Identities=10% Similarity=0.006 Sum_probs=141.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------hhhHHHHHHHHHhcCchhHHHHHHHHHHhcC-CCcc
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPD----------------LETFNSLIETICKSGEVEFCVEMYYSVCKLG-SCAD 79 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 79 (217)
...+.+.|++++|.+.|..+.+...... ...+..+...|.+.|++++|.+.+..+.... ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999987532221 1236788999999999999999998875421 1112
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHhc--CC--
Q 035645 80 V----STYKILIPAVSKAGMIDEAFRLLHNLVED----GHNP-FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--GH-- 146 (217)
Q Consensus 80 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~-- 146 (217)
. .+.+.+-..+...|+.++|..++...... +..+ -..++..+...+...|++++|..++...... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 23344444455678999999998886532 2222 2457788999999999999999999987643 11
Q ss_pred CC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC-CC-C--hhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 147 PP-NRPVYTTLITMCGRGGRFVEAANYLMEMTEM--GL-TP-I--SRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 147 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.+ ...++..++..|...|++++|...+++.... .. .| . ...+..+...+...|++++|.+.+....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2468888999999999999999999887632 11 12 1 24567777888889999999888766543
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=1.6e-07 Score=57.48 Aligned_cols=98 Identities=16% Similarity=0.077 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455566666666666666666666665542 2245556666666666666666666666665542 1234555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 035645 90 VSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (217)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=8.6e-08 Score=58.18 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHhHHHHHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP--NRPVYTTLITMC 160 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 160 (217)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3333444444444444444444443322 1122333344444444444444444444443331 11 233444444444
Q ss_pred hcC-CCHHHHHHHHHHHHH
Q 035645 161 GRG-GRFVEAANYLMEMTE 178 (217)
Q Consensus 161 ~~~-g~~~~a~~~~~~~~~ 178 (217)
... |++++|.+.++...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 444 444444444444443
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.87 E-value=2.3e-07 Score=56.77 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555555555555555554432 1234445555555555555555555555554432 22334444455555
Q ss_pred HhcCChHHHHHHHHHHHh
Q 035645 126 FRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~~ 143 (217)
...|++++|...+....+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555444
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.87 E-value=7.9e-08 Score=60.45 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--cc----hhhHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC--AD----VSTYKI 85 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 85 (217)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|++.+++..+.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45555666666666666666666665542 224555666666666666666666666665442110 00 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555444
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.87 E-value=1e-07 Score=57.80 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=87.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--ChhhHHHH
Q 035645 114 FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP--ISRCFDLV 191 (217)
Q Consensus 114 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 191 (217)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45677888899999999999999999998763 3467889999999999999999999999998764 23 57788999
Q ss_pred HHHHHhc-CCchHHHHHHHHHhhhcC
Q 035645 192 TDGLKNC-GKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 192 ~~~~~~~-~~~~~a~~~~~~~~~~~~ 216 (217)
..++... |++++|.+.++......|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999887764
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=8.9e-08 Score=61.37 Aligned_cols=94 Identities=14% Similarity=-0.010 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|+..|++..... +.+...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4444445555555555555555555432 1244445555555555555555555555554432 1233444455555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 035645 93 AGMIDEAFRLLHNLVE 108 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~ 108 (217)
.|++++|...|++..+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=2.3e-08 Score=64.17 Aligned_cols=100 Identities=11% Similarity=0.000 Sum_probs=85.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 79 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
+...+..+...+.+.|++++|...|++....+ +.+...|..+..++.+.|++++|...|+...... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44567778888999999999999999998775 4467788889999999999999999999998864 335778888999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcC
Q 035645 159 MCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
++...|++++|.+.|+...+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988653
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=1.3e-07 Score=64.03 Aligned_cols=131 Identities=10% Similarity=-0.067 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC--------------hhhHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSD-PD--------------LETFNSLIETICKSGEVEFCVEMYYSVCKLG 75 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 75 (217)
..+..+...+.+.|++++|...|++..+.... |+ ...+..+..++.+.|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45677788899999999999999999875322 10 2688889999999999999999999998763
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 035645 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF-CFFSEIKI 143 (217)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~ 143 (217)
+.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++. ..+..+..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467889999999999999999999999998764 335567777777777777766665 44444443
No 151
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.83 E-value=4.1e-07 Score=72.91 Aligned_cols=186 Identities=7% Similarity=-0.074 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHH-HHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCV-EMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLH 104 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (217)
.+++..+|++.+.. .+-+...|-..+..+.+.|+.++|. ++|++.... .+.+...+-..+....+.|++++|..+|+
T Consensus 325 ~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 325 KARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34567788888775 3447888988888888999999997 999999864 34456667788888999999999999999
Q ss_pred HHHhCC---------CCCC------------cccHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHhHHHHHHHHHhc
Q 035645 105 NLVEDG---------HNPF------------PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-GHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 105 ~~~~~~---------~~~~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 162 (217)
.+.+.. ..|+ ..+|...+....+.|..+.|..+|....+. +. +....|...+..-.+
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 987631 0132 236888888888999999999999999876 21 123344433333334
Q ss_pred C-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhc
Q 035645 163 G-GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLR 215 (217)
Q Consensus 163 ~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (217)
. ++.+.|.++|+...+. .+-+...+...++.....|+.+.|..+|++.....
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4 4589999999999876 23345556678888888999999999999987654
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.9e-07 Score=58.33 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 035645 16 LVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
....+.+.|++++|...|++..
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al 31 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMI 31 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333444444444443333
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=4e-07 Score=58.22 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD----LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYK 84 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (217)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34455566666666666666666666665542 33 4455555556666666666666666655432 12344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555566666666666666655543
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.8e-07 Score=58.46 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.+ +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444455555555555555544432 1133444444444555555555555554444432 222334444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 035645 127 RRGQFDDAFCFFSEIK 142 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~ 142 (217)
..|++++|...|++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 4444444444444443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=1.9e-07 Score=58.69 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----cccHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH--NPF----PSLYAP 120 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 120 (217)
.+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.+. .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666666666666666666542 22445566666666666666666666666554310 000 113344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~ 143 (217)
+-.++...|++++|.+.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=5.2e-07 Score=57.67 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=66.6
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD----VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA 119 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (217)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556667777777777788888777777664 344 4666667777777777777777777766553 22455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 120 PIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6667777777777777777776654
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=2.2e-07 Score=60.95 Aligned_cols=99 Identities=9% Similarity=-0.074 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+...|..+...+.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777777888888888888888877653 2266677777778888888888888888777653 224667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 035645 89 AVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (217)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.81 E-value=3.2e-07 Score=58.03 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 4445555555555555555555555555432 1234455555555555555555555555554432 1134445555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 035645 90 VSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~ 107 (217)
+...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555544
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.81 E-value=7.8e-08 Score=69.05 Aligned_cols=163 Identities=9% Similarity=-0.044 Sum_probs=109.8
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.+ +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56678888899999999999999999998753 2367889999999999999999999999998774 445678889999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
++...|++++|...|....+.... +...+...+....+ ..++. -+......-...+......+ ..+. .|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l-~~l~-~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYL-TRLI-AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHH-HHHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHH-HHHH-HHHHHH
Confidence 999999999999999988764210 11111111111111 11111 12222333333444443333 3332 577788
Q ss_pred HHHHHHHHhhhc
Q 035645 204 AEKIEQLEVSLR 215 (217)
Q Consensus 204 a~~~~~~~~~~~ 215 (217)
|.+.++...+++
T Consensus 154 A~~~~~~al~~~ 165 (281)
T 2c2l_A 154 ELEECQRNHEGH 165 (281)
T ss_dssp HHTTTSGGGTTT
T ss_pred HHHHHHhhhccc
Confidence 777766655544
No 160
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=8.1e-06 Score=59.16 Aligned_cols=188 Identities=7% Similarity=-0.022 Sum_probs=145.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--chhHHHHHHHHHHhcCCCcchhhHHHHHHHH----Hhc-
Q 035645 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG--EVEFCVEMYYSVCKLGSCADVSTYKILIPAV----SKA- 93 (217)
Q Consensus 21 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~- 93 (217)
.+....++|++.++.++..... +...|+.--.++...+ +++++++.++.+...+.. +..+|+.--.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3444557999999999986432 6677888888888888 999999999999886433 455666555555 555
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCC----
Q 035645 94 --GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD--DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGR---- 165 (217)
Q Consensus 94 --~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 165 (217)
+++++++.+++.+.+.+ +-+..+|+.--..+.+.|.++ ++++.+..+.+.... |-..|+.-...+...++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 78999999999999875 456778888888888899988 999999999987543 77888888777777777
Q ss_pred --HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH-HHHHHHHHhh
Q 035645 166 --FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL-AEKIEQLEVS 213 (217)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 213 (217)
++++.+.+++..... +-|...|+.+-..+.+.|+... +..+.....+
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 899999999998865 4577788888888888887544 5556555443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.81 E-value=1.6e-07 Score=59.46 Aligned_cols=100 Identities=10% Similarity=-0.103 Sum_probs=86.9
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHH
Q 035645 78 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLI 157 (217)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 157 (217)
.+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...+....... +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788899999999999999999999988765 4456788999999999999999999999998764 33678899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc
Q 035645 158 TMCGRGGRFVEAANYLMEMTEM 179 (217)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~ 179 (217)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.79 E-value=9.7e-08 Score=59.64 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
.+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34445555555555555555555554432 22344444555555555555555555555443
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.78 E-value=1.4e-07 Score=61.88 Aligned_cols=100 Identities=12% Similarity=-0.030 Sum_probs=88.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 79 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...|+...+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56778889999999999999999999998875 4467789999999999999999999999998874 335889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcC
Q 035645 159 MCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
++...|++++|.+.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.78 E-value=1.5e-07 Score=58.72 Aligned_cols=109 Identities=11% Similarity=0.149 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--cc----hhhH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC--AD----VSTY 83 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 83 (217)
...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4568888999999999999999999998764 347788889999999999999999999998764321 11 6678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 035645 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPI 121 (217)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (217)
..+..++...|++++|...|++..+.. |+......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 888888899999999999998888753 444444333
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=2.2e-06 Score=62.96 Aligned_cols=201 Identities=10% Similarity=0.031 Sum_probs=111.2
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-C-chhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 13 RDLLVQGLLNAG-YLESAKQMVNKMIKQGSDPDLETFNSLIETICKS-G-EVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 13 ~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
|+.--..+...| .+++++.+++.+.....+ +..+|+.--.++.+. + ++++++++++++.+.. +.|..+|+--.-+
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wv 168 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWL 168 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 454444455555 366666666666655332 555565555444444 4 5666666666665542 2244555544444
Q ss_pred HHhcCCHH--------HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-------hHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 90 VSKAGMID--------EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ-------FDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 90 ~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
+.+.+.++ ++++.++++.+.+ +-+..+|+..-..+.+.+. ++++++.+.+..... +-|...|+
T Consensus 169 l~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~ 246 (349)
T 3q7a_A 169 YSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWN 246 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44444444 6666666666654 3355566666666655554 466666666665542 23556665
Q ss_pred HHHHHHhcCCCH--------------------HHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 155 TLITMCGRGGRF--------------------VEAANYLMEMTEMG-----LTPISRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 155 ~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
-+-..+.+.|+. ....+...++...+ -.+++.....+++.|...|+.++|.++++
T Consensus 247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 554444444432 22222222222211 13566778889999999999999999998
Q ss_pred HHh-hhcCC
Q 035645 210 LEV-SLRSV 217 (217)
Q Consensus 210 ~~~-~~~~v 217 (217)
.+. +.+||
T Consensus 327 ~l~~~~dpi 335 (349)
T 3q7a_A 327 KLSSEYDQM 335 (349)
T ss_dssp HHHHTTCGG
T ss_pred HHHhhhChH
Confidence 886 55654
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.74 E-value=9.9e-08 Score=61.83 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCchhHHHHHHHHHHhcC----CCc-ch
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSD-PD----LETFNSLIETICKSGEVEFCVEMYYSVCKLG----SCA-DV 80 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 80 (217)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666666667777776666665542100 01 1245555556666666666666666553310 000 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
.++..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455555555555555555555543
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=2.4e-07 Score=57.72 Aligned_cols=94 Identities=10% Similarity=-0.067 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 162 (217)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344455555666666666666655543 2244455555555666666666666666555542 1234455555555556
Q ss_pred CCCHHHHHHHHHHHHH
Q 035645 163 GGRFVEAANYLMEMTE 178 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~ 178 (217)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655544
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.72 E-value=3.4e-07 Score=57.00 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+... .+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 45555666677777777777777776643 22566666777777777777777777777766432 24556666777777
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 035645 92 KAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (217)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776654
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.71 E-value=1.6e-07 Score=60.85 Aligned_cols=61 Identities=18% Similarity=0.056 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-cc----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSC-AD----VSTYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666655432100 01 1245555555555666666665555544
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=6.2e-07 Score=68.88 Aligned_cols=122 Identities=13% Similarity=-0.070 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD--------------LETFNSLIETICKSGEVEFCVEMYYSVCKLGSC 77 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (217)
.|..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 455566666667777777777776665321111 3555566666666666666666666665542 2
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH
Q 035645 78 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 135 (217)
.+...|..+..+|...|++++|...|++..+.. +.+..++..+..++.+.++.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 244555566666666666666666666665543 223445555555555555555443
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.69 E-value=2e-08 Score=77.58 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
.+..+...+.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444556778899999999999998863 3368899999999999999999999999998863 235788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCChHHHHHHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG--AFRRGQFDDAFCFFS 139 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 139 (217)
..|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998764 3344556666555 888899999999988
No 172
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=5e-07 Score=64.35 Aligned_cols=129 Identities=9% Similarity=-0.077 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc--hhhHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD--VSTYKILIPAV 90 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~ 90 (217)
+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3445666777888888888888877643 433355556667788888888888887554321 111 23667777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPF--PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888888775432243 234555667777888888888888888775
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=1.5e-08 Score=78.28 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 035645 49 NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR 128 (217)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (217)
..+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...+++..+.. +.+..++..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334445667778888888888777652 2246777777788888888888888888877764 33456777777778888
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhHHHHHHHH--HhcCCCHHHHHHHHHH
Q 035645 129 GQFDDAFCFFSEIKIKGHPPNRPVYTTLITM--CGRGGRFVEAANYLME 175 (217)
Q Consensus 129 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 175 (217)
|++++|...|++..+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888888887776652 1233444444444 6666777777777653
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.64 E-value=1.2e-06 Score=54.75 Aligned_cols=100 Identities=16% Similarity=0.006 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HhHHHHH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN---RPVYTTL 156 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 156 (217)
+..+...+...|++++|...|++..+.. +.+. ..+..+..++.+.|++++|...|........ .+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHH
Confidence 4456677889999999999999998764 2233 4777888999999999999999999887632 23 5678888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 157 ITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 157 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
..++...|++++|...|+++.+.. |+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 889999999999999999998764 5443
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.64 E-value=2.2e-05 Score=57.38 Aligned_cols=185 Identities=8% Similarity=0.017 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC-HHHHHHH
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSG--EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM-IDEAFRL 102 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~ 102 (217)
+++++.+++.+..... -+..+|+.-...+...+ .+++++.+++++.+... .|..+|+--.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 6789999999987643 38888888777777777 48999999999988643 477888877777888888 6999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC-----
Q 035645 103 LHNLVEDGHNPFPSLYAPIIKGAFRR--------------GQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG----- 163 (217)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 163 (217)
+.++.+.+ +-|..+|+.....+.+. +.++++++.+....... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 99999876 45677787776666655 45788999999888763 34678887655555544
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCChhhHHHHHH-----HHHhcCCchHHHHHHHHHhhhcCC
Q 035645 164 ------GRFVEAANYLMEMTEMGLTPISRCFDLVTD-----GLKNCGKHDLAEKIEQLEVSLRSV 217 (217)
Q Consensus 164 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~v 217 (217)
+.++++.+.++++.+.. ||. .|..+.. +....|..+++...++.+.+++|+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 45789999999998754 554 2333222 223567788999999999999874
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.64 E-value=3.2e-06 Score=52.71 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc---hhhHHHHH
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDL---ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD---VSTYKILI 87 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 87 (217)
..+...+...|++++|...|++..+.... +. ..+..+..++.+.|++++|+..|++..+.... + ..++..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34455566666666666666666653211 22 35555666666666666666666666553211 2 34455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 035645 88 PAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
.++...|++++|...|++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.62 E-value=8.2e-07 Score=68.19 Aligned_cols=131 Identities=11% Similarity=-0.000 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 035645 45 LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD--------------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 110 (217)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (217)
...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|...+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44667778888889999999999988876421111 4678888888888899999988888888764
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHH-HHHHHH
Q 035645 111 HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAAN-YLMEMT 177 (217)
Q Consensus 111 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~ 177 (217)
+.+..+|..+..++...|++++|...|++..+.. +-+...+..+..++...++.+++.+ .+..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888889999988888887653 2245677777777877787776653 344443
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=2.1e-07 Score=57.51 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=41.4
Q ss_pred cCchhHHHHHHHHHHhcC--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH
Q 035645 58 SGEVEFCVEMYYSVCKLG--SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAF 135 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 135 (217)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|...|++..+.. +-+..++..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 11233445555555555555555555555555443 223444555555555555555555
Q ss_pred HHHHHHHh
Q 035645 136 CFFSEIKI 143 (217)
Q Consensus 136 ~~~~~~~~ 143 (217)
..+.....
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.58 E-value=1.5e-06 Score=64.84 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhc---------------CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKL---------------GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN 112 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (217)
+..+...+.+.|++++|+..|++..+. .-+.+..+|..+..+|.+.|++++|...+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 555666677777777777777766541 001123444555555555555555555555555432 2
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 113 PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 113 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
.+..+|..+..++...|++++|...|++..+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 23344444555555555555555555554443
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.56 E-value=1.2e-07 Score=58.56 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDG--HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 169 (217)
..|++++|...|++..+.+ -+.+..++..+..++...|++++|...|++..+.. +-+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998864 12345678889999999999999999999998774 33578888999999999999999
Q ss_pred HHHHHHHHHc
Q 035645 170 ANYLMEMTEM 179 (217)
Q Consensus 170 ~~~~~~~~~~ 179 (217)
.+.+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988864
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.4e-06 Score=64.71 Aligned_cols=163 Identities=10% Similarity=0.005 Sum_probs=118.7
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcc----------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCAD----------------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-NPF 114 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 114 (217)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+.+..+.-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999999976432211 12477899999999999999999998765311 111
Q ss_pred c----ccHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC--
Q 035645 115 P----SLYAPIIKGAFRRGQFDDAFCFFSEIKIK----GHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEM--GL-- 181 (217)
Q Consensus 115 ~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-- 181 (217)
. .+.+.+-..+...|+++.|..++...... +..+. ..++..+...+...|++++|..++.+.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333334455678999999999887542 33333 467888999999999999999999988742 11
Q ss_pred CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 182 TP-ISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 182 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
.+ ...++..++..|...|++++|..+++.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 11 2357889999999999999999999877654
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.55 E-value=5.4e-07 Score=69.55 Aligned_cols=123 Identities=10% Similarity=0.008 Sum_probs=58.9
Q ss_pred HHhcCCHHHHHHHHHHHhhC---CCCC----ChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-----CC-Ccc-hhhHHH
Q 035645 20 LLNAGYLESAKQMVNKMIKQ---GSDP----DLETFNSLIETICKSGEVEFCVEMYYSVCKL-----GS-CAD-VSTYKI 85 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 85 (217)
+...|++++|..++++.++. -+.| ...+++.|...|...|++++|..++++..+. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33456666666666555431 1111 2334555666666666666666665554321 10 111 244555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVED-----GH--NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
|...|...|++++|..++++..+. |. +....+.+.+-.++...+.+++|+.+|..++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555554321 11 1111233344444445555555555555554
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.55 E-value=1.1e-06 Score=65.55 Aligned_cols=125 Identities=11% Similarity=-0.059 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVED---------------GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
..+..+...+.+.|++++|...|++..+. ..+.+..+|..+..++.+.|++++|...+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45778888999999999999999988761 112245678899999999999999999999998763
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHH
Q 035645 146 HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 207 (217)
Q Consensus 146 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (217)
+.+...+..+..++...|++++|.+.|++..+.. +-+...+..+..++...++.+++.+.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367889999999999999999999999998764 23566777888888888877777654
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=2.3e-06 Score=55.47 Aligned_cols=62 Identities=16% Similarity=0.021 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CcccH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLVED-----GHNP-FPSLY----APIIKGAFRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~ 143 (217)
.|..+..++.+.|++++|+..+++.++. .+.| +...| ...-.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555555555555555555554443 0122 23344 5555555566666666666555543
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.54 E-value=9.5e-05 Score=54.06 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=136.0
Q ss_pred HhcCCHH-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCc----------hhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 21 LNAGYLE-SAKQMVNKMIKQGSDPDLETFNSLIETICKSGE----------VEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 21 ~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
.+.|.++ +|+++++.+...+.. +..+|+.--..+...+. +++++.+++.+..... -+..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3456654 799999999986432 55567654333333332 6789999999987643 367788877777
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC---
Q 035645 90 VSKAG--MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ-FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG--- 163 (217)
Q Consensus 90 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 163 (217)
+.+.+ .+++++.+++.+.+.+ +-+..+|+.--......|. ++++++.+..+.+..+ -|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhc
Confidence 77877 4899999999999876 4567788877778888888 5899999999988754 3677787766555443
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----------CCchHHHHHHHHHhhhcC
Q 035645 164 -----------GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNC-----------GKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 164 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 216 (217)
+.++++.+.+....... +-|...|+.+-..+.+. +.++++.+.++.+.+..|
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 45788999998888754 34556666555555554 346677777777766554
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.53 E-value=3.2e-06 Score=55.18 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
..|..+..+|.+.|++++|...+++..+.+ +.+...|..+..++...|++++|...|......
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 455556666666666666666666665543 233455555666666666666666666665544
No 187
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.53 E-value=8.3e-05 Score=54.69 Aligned_cols=184 Identities=6% Similarity=-0.012 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-chhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG-EVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
++.+-....+.+..++|++++++++..... +..+|+.--..+...+ .+++++++++.+..... -+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 344444445566678999999999986533 6677888777777778 59999999999987643 36677887777777
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCHhHHHHHHHHHh
Q 035645 92 KA-G-MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD--------DAFCFFSEIKIKGHPPNRPVYTTLITMCG 161 (217)
Q Consensus 92 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 161 (217)
+. + ++++++.+++++.+.+ +-+..+|+.-...+.+.|.++ ++++.+.++.+... -|...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 76 6 8899999999999875 446667776666666666666 89999999988754 37889999888888
Q ss_pred cCCC-------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCc
Q 035645 162 RGGR-------FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKH 201 (217)
Q Consensus 162 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (217)
+.++ ++++++.+++..... +-|...|+.+-..+.+.|..
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 8876 688999998888765 34666777766666666654
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.52 E-value=5.8e-07 Score=69.41 Aligned_cols=124 Identities=10% Similarity=0.032 Sum_probs=88.3
Q ss_pred HHhcCchhHHHHHHHHHHhc---CCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCcccHHH
Q 035645 55 ICKSGEVEFCVEMYYSVCKL---GSCA----DVSTYKILIPAVSKAGMIDEAFRLLHNLVED-----G--HNPFPSLYAP 120 (217)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 120 (217)
+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|..++++.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55788999999988877542 1112 2467888999999999999998888876532 2 1122357888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----cCCC-CC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKI-----KGHP-PN-RPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
|...|...|++++|..++++... .|.. |+ ..+.+.+-.++...+.+++|..++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999988887653 2321 22 34556666777788888888888888774
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.48 E-value=6.2e-07 Score=66.11 Aligned_cols=112 Identities=10% Similarity=0.012 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
.+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ..+|..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3445556666677777777777776553 233221 111112222211110 124455555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 127 RRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
+.|++++|...+....+.. +.+...|..+..++...|++++|...|++..+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555432 22345555555555555555555555555443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=4.1e-06 Score=54.69 Aligned_cols=69 Identities=17% Similarity=0.082 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 115 PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 115 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
..+|..+..++.+.|++++|...+....... +.+...|..+..++...|++++|...|++..+.. |+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCH
Confidence 4678889999999999999999999998863 3468899999999999999999999999998864 5443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.47 E-value=6.2e-07 Score=66.10 Aligned_cols=116 Identities=11% Similarity=-0.040 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
..+..+...+.+.|++++|...|++..... |+.. .+...|+.+++...+. ...|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 445566666777777888887777766542 2211 1222333333332221 13788899999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 161 GRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.++...++.|
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999998865 34677899999999999999999999999887764
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=3.2e-05 Score=61.01 Aligned_cols=175 Identities=10% Similarity=0.017 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCc----------hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhc
Q 035645 24 GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE----------VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKA 93 (217)
Q Consensus 24 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (217)
..-++|++.++++.+.... +..+|+.--.++...++ ++++++.++.+.+... -+..+|+.-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 4456789999999886433 66678776666666666 8999999999988643 3677888888888888
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC-------
Q 035645 94 G--MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG-QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG------- 163 (217)
Q Consensus 94 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 163 (217)
+ +++++.+.++++.+.+ +-+..+|+.--.++.+.| .++++.+.+.++.+..+ -|...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence 9 7799999999999876 446778888888888888 89999999999887643 3677888776665542
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 164 -------GRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 164 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
+.++++.+.+++..... +-|...|..+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56789999998888755 3366678887777777776443
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.43 E-value=4.5e-06 Score=54.10 Aligned_cols=98 Identities=17% Similarity=0.010 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----Cc-----ccHHHHHHHHHhcCChHHHHHHHHHHHhc-----
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHN-P-----FP-----SLYAPIIKGAFRRGQFDDAFCFFSEIKIK----- 144 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 144 (217)
..+......+.+.|++++|...|++..+.... | +. ..|..+-.++.+.|++++|+..++..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44566677777888888888888887765311 0 11 15666666666677777777776666553
Q ss_pred CCCCC-HhHH----HHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 145 GHPPN-RPVY----TTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 145 ~~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
.+.|+ ...| .....++...|++++|...|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11233 3455 5666666666666666666666554
No 194
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.36 E-value=9e-05 Score=57.47 Aligned_cols=189 Identities=15% Similarity=0.045 Sum_probs=123.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcC------------
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLG------------ 75 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------ 75 (217)
.+...|-..+..+.+.|+++.|..++++.... +.+...|. .|+...+.++. ++.+.+.-
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------C
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhc
Confidence 34567777888888899999999999999887 33333322 22222222222 33332210
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCHhHHH
Q 035645 76 SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR-GQFDDAFCFFSEIKIKGHPPNRPVYT 154 (217)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (217)
.......|...+....+.+..+.|..+|++. ... ..+..+|......-... ++.+.|..+|+...+.. +-++..+.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~ 358 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHH
Confidence 0112355777777777788899999999998 321 12333443322222223 36999999999988762 22455667
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 155 TLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 155 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
..++.....|+.+.|..+|+... .....|...+.-=...|+.+.+.++++...+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77887788899999999998862 2456677777766778999999998777663
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.35 E-value=3.3e-05 Score=49.10 Aligned_cols=110 Identities=11% Similarity=-0.073 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh----cCCHHHHH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK----AGMIDEAF 100 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 100 (217)
++++|.+.|++..+.| .|... +...|...+..++|++.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666655554 11222 4444444455555555555555432 34445555555555 45555555
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 035645 101 RLLHNLVEDGHNPFPSLYAPIIKGAFR----RGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 145 (217)
.+|++..+.| +...+..+-..|.. .++.++|...|+...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 33444444444444 455555555555554443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.33 E-value=2.9e-05 Score=49.34 Aligned_cols=113 Identities=11% Similarity=-0.014 Sum_probs=88.1
Q ss_pred cCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHH
Q 035645 58 SGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFR----RGQFDD 133 (217)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 133 (217)
.+++++|++.|++..+.|. |+. . +...|...+.+++|.++|++..+.| +...+..+-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 3578889999998887762 222 2 6667777788888999999888875 56677777777877 788999
Q ss_pred HHHHHHHHHhcCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCC
Q 035645 134 AFCFFSEIKIKGHPPNRPVYTTLITMCGR----GGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~ 181 (217)
|...|++..+.| +...+..|...|.. .+++++|.++|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999888775 56677778888877 7889999999988887763
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=6.9e-07 Score=54.18 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=43.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (217)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44556666677777777777777777766543 225566666777777777777777777776653
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=0.00015 Score=57.17 Aligned_cols=153 Identities=5% Similarity=-0.087 Sum_probs=119.6
Q ss_pred chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 60 EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM----------IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
..++|++.++.+...+.. +..+|+.--.++...++ ++++.+.++.+.+.+ +-+..+|+.--.++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346889999999885422 45667776667777776 899999999999875 446678888888888999
Q ss_pred --ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------
Q 035645 130 --QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGG-RFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNC-------- 198 (217)
Q Consensus 130 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 198 (217)
+++++.+.+.++.+... -+..+|+.-...+.+.| .++++.+.++++.+.. .-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999998753 37888988888888888 8999999999988765 34666777776666653
Q ss_pred ------CCchHHHHHHHHHhhhcC
Q 035645 199 ------GKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 199 ------~~~~~a~~~~~~~~~~~~ 216 (217)
+.++++.+.++.+...+|
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCC
Confidence 456888888888877665
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.1e-05 Score=48.78 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=47.1
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
+...+..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45566677777777888888888888777653 235666777777777888888888888777765
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=1.7e-05 Score=48.50 Aligned_cols=80 Identities=15% Similarity=0.007 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
+|...|++..+.. +.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778888888764 4456788889999999999999999999998763 3357788899999999999999999999887
Q ss_pred Hc
Q 035645 178 EM 179 (217)
Q Consensus 178 ~~ 179 (217)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=7e-05 Score=43.25 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (217)
..+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555555666666666666666655432 224445555555556666666666666555543
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.10 E-value=5.1e-05 Score=43.86 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
..+..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555555566666666666666655432 123445555555556666666666666555543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=4.1e-05 Score=46.67 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
...+..+...+...|++++|...|++..+.+ +.+...|..+..++...|++++|...|+...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444455555554444444432 1223344444444555555555555554443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.06 E-value=3.2e-05 Score=50.05 Aligned_cols=97 Identities=10% Similarity=0.075 Sum_probs=66.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCch----------hHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 035645 21 LNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEV----------EFCVEMYYSVCKLGSCADVSTYKILIPAV 90 (217)
Q Consensus 21 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (217)
.+.+++++|.+.++...+.. +-+...|..+..++.+.+++ ++|+..|++..+... -+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 45567888888888888764 33777888777788877765 488888888877532 2456777888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCcccHHHH
Q 035645 91 SKAG-----------MIDEAFRLLHNLVEDGHNPFPSLYAPI 121 (217)
Q Consensus 91 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (217)
.+.| ++++|...|++..+. .|+...|...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7764 677777777777665 3554444333
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=4.7e-05 Score=45.35 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=65.4
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCChhhHHHHH
Q 035645 114 FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL-TPISRCFDLVT 192 (217)
Q Consensus 114 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 192 (217)
+...+..+...+...|++++|...|+...+.. +.+...|..+..++...|++++|.+.+++..+... .++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 46678888999999999999999999998764 23567889999999999999999999998875321 24555555555
Q ss_pred HHHHhcCC
Q 035645 193 DGLKNCGK 200 (217)
Q Consensus 193 ~~~~~~~~ 200 (217)
..+...+.
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 55554443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=5.7e-05 Score=48.85 Aligned_cols=99 Identities=13% Similarity=-0.027 Sum_probs=69.2
Q ss_pred HhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 56 CKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI----------DEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
.+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++..+.+ +-+..+|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45677889999999888764 23677888888888887765 48888888877764 33456777777887
Q ss_pred HhcC-----------ChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 126 FRRG-----------QFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 126 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
...| ++++|...|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 7664 677777777777664 455444444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=0.00011 Score=43.76 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVC 72 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 72 (217)
...+..+...+.+.|++++|...|++..+... .+...|..+..+|...|++++|++.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555554421 134455555555555555555555555544
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.85 E-value=0.00019 Score=54.62 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=55.5
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcC---CCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCccc
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLG---SCA----DVSTYKILIPAVSKAGMIDEAFRLLHNLVED-----G--HNPFPSL 117 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 117 (217)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|..++++.+.. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334455667777777777665321 112 2356777777777777777777777765531 1 1112345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 118 YAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 118 ~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777777777777777777654
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.84 E-value=0.00011 Score=55.99 Aligned_cols=84 Identities=4% Similarity=-0.155 Sum_probs=46.6
Q ss_pred CchhHHHHHHHHHHhc---CCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CcccHHHHHHH
Q 035645 59 GEVEFCVEMYYSVCKL---GSCA----DVSTYKILIPAVSKAGMIDEAFRLLHNLVED-----GH-NP-FPSLYAPIIKG 124 (217)
Q Consensus 59 ~~~~~a~~~~~~~~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ll~~ 124 (217)
|++++|+.++++..+. -+.| ...+++.+..+|...|++++|..++++.++. |. .| ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666555321 1111 1255666666666666666666666665421 11 11 22356666666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 035645 125 AFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~ 142 (217)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777766666654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.82 E-value=7e-05 Score=56.98 Aligned_cols=85 Identities=8% Similarity=-0.023 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhC---CCCC----CcccHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC-CCC-HhHHHHHHHH
Q 035645 94 GMIDEAFRLLHNLVED---GHNP----FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-----GH-PPN-RPVYTTLITM 159 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~ 159 (217)
|++++|..++++.++. -+.| ...+++.+..+|...|++++|..++++...- |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5788888888876642 1122 2467899999999999999999999987542 31 233 5789999999
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 035645 160 CGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~ 178 (217)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999998763
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.81 E-value=0.00011 Score=55.84 Aligned_cols=91 Identities=9% Similarity=0.061 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----CcccHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-CCCC-HhH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDG---HNP----FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK-----G-HPPN-RPV 152 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~ 152 (217)
+..+.+.|++++|..++++.++.. +.| ...+++.+..+|...|++++|..++++...- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999999887541 112 2357888899999999999999999887532 2 1222 468
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 153 YTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 153 ~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8889999999999999999988876
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.76 E-value=0.0024 Score=47.22 Aligned_cols=144 Identities=10% Similarity=0.002 Sum_probs=83.5
Q ss_pred CCCChhhHHHHHHHHHh-----cCchhHHHHHHHHHHhcCCCcch-hhHHHHHHHHH----hcC-CHHHH---HHHHHHH
Q 035645 41 SDPDLETFNSLIETICK-----SGEVEFCVEMYYSVCKLGSCADV-STYKILIPAVS----KAG-MIDEA---FRLLHNL 106 (217)
Q Consensus 41 ~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~----~~~-~~~~a---~~~~~~~ 106 (217)
.+.+...|...+.+... ..+..+|..+|++..+. .|+- ..+..+.-+|. ..+ ..... ...+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 35566777666655432 22346778888877763 3442 33332222221 111 11111 1112211
Q ss_pred HhC-CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh
Q 035645 107 VED-GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS 185 (217)
Q Consensus 107 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 185 (217)
... ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+.+....+ |..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCc
Confidence 111 114456677777666667788888888888887774 677777777777888888888888888777653 666
Q ss_pred hhHHH
Q 035645 186 RCFDL 190 (217)
Q Consensus 186 ~~~~~ 190 (217)
.+|..
T Consensus 344 ~t~~~ 348 (372)
T 3ly7_A 344 NTLYW 348 (372)
T ss_dssp HHHHH
T ss_pred ChHHH
Confidence 65543
No 213
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.76 E-value=0.0012 Score=51.28 Aligned_cols=173 Identities=9% Similarity=-0.088 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (217)
.+++..+|++++... +.+...|...+..+.+.|+.+.|..+|++.... +.+...+. .|....+.++. ++.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHH
Confidence 355778888888753 446788888888889999999999999999887 33333222 23222222222 222
Q ss_pred HHhCC---------C---CCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhc-CCCHHHHHHH
Q 035645 106 LVEDG---------H---NPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGR-GGRFVEAANY 172 (217)
Q Consensus 106 ~~~~~---------~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~ 172 (217)
+.+.- . .....+|...+....+.+..+.|..+|... .. ...+...|......-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22110 0 011245677777777788999999999998 32 12234444432222222 2369999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 173 LMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
|+...+.. +-+...+...++-....|+.+.|..+++..
T Consensus 343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988753 122344556677778889999999998875
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.74 E-value=0.00086 Score=49.55 Aligned_cols=137 Identities=12% Similarity=-0.024 Sum_probs=94.9
Q ss_pred CCcchhhHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHh----cCC-hHHHH---HHHHHH
Q 035645 76 SCADVSTYKILIPAVSK--AG---MIDEAFRLLHNLVEDGHNPF-PSLYAPIIKGAFR----RGQ-FDDAF---CFFSEI 141 (217)
Q Consensus 76 ~~~~~~~~~~ll~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~----~g~-~~~a~---~~~~~~ 141 (217)
.+.+...|...+.+... .+ ...+|..+|++..+.. |+ ...|..+..++.. .+. ..... .-+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45577888888877543 22 3478999999999874 44 3455544444321 111 11111 112211
Q ss_pred Hh-cCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhhcC
Q 035645 142 KI-KGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSLRS 216 (217)
Q Consensus 142 ~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (217)
.. ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.++.+..++|
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 11 1224567888888777777899999999999999876 7888888889999999999999999999998887
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.73 E-value=0.0011 Score=54.27 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=63.7
Q ss_pred HHHHhcCCHHHHHH-HHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 18 QGLLNAGYLESAKQ-MVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 18 ~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
......++++.|.+ ++..+ |+......++..+.+.|.+++|+++.+.- . .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCH
Confidence 34456788888876 54221 11223366777777888888877665311 1 112334567888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
++|.++.+.+ .+...|..+...+.+.|+++.|.++|..+.
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 8887775433 345678888888888888888888887764
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.64 E-value=0.0049 Score=50.51 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
...++..+.+.|.++.|.++.+.- ..-.....+.|++++|.++.+.+ .+...|..+...+.+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHH
Confidence 367777788888888888765321 11134456789999999886433 366789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANY 172 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 172 (217)
.++++.|.+.|.++.. |..+...+...|+.+....+-+.....|. ++....++.+.|++++|.++
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998743 34455555556666665555555444431 23333334445555555555
Q ss_pred HHHH
Q 035645 173 LMEM 176 (217)
Q Consensus 173 ~~~~ 176 (217)
+.++
T Consensus 759 ~~~~ 762 (814)
T 3mkq_A 759 LIKS 762 (814)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.54 E-value=0.0005 Score=40.38 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLE-TFNSLIETICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (217)
....+.+.|++++|...+++..+.. +.+.. .+..+..++...|++++|+..|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556677777777777666542 22445 6666666666677777777777666654
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0076 Score=39.61 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=93.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
....+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3456789999999998876 3788999999999999999999999988754 556667788888888
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 98 EAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
+..++-+.....| -++.....+...|+++++.++|.+.. .-|... ......|-.+.|.++...+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 8777766665554 25667777888999999999987433 222111 1112255667777777655
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.50 E-value=0.00033 Score=41.21 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPS-LYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
...+.+.|++++|...|++..+.. +.+.. .+..+..++...|++++|...|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666666666666666543 22334 5566666666666666666666666554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.49 E-value=0.0012 Score=42.30 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--CHhHHHHHHHHHhcCCCHHHHH
Q 035645 96 IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG---QFDDAFCFFSEIKIKGHPP--NRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 170 (217)
...+.+-|.+..+.+ .++..+.-.+..++++.+ +.+++..+++...+.. .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 455566666665555 356666666667777766 5557777777776653 23 2344445556667777777777
Q ss_pred HHHHHHHHc
Q 035645 171 NYLMEMTEM 179 (217)
Q Consensus 171 ~~~~~~~~~ 179 (217)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777764
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.37 E-value=0.004 Score=37.16 Aligned_cols=67 Identities=7% Similarity=0.046 Sum_probs=47.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 035645 8 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG------SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (217)
.+...+-.+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|+..+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 455666777888888888888888888776531 1234566777777888888888888888777663
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.37 E-value=0.0019 Score=38.63 Aligned_cols=71 Identities=11% Similarity=0.029 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 114 FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG------HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 114 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
+...+..+...+.+.|+++.|...|+...+.. -.+....+..+..++.+.|+++.|...+++..+. .|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 44556678888999999999999999876531 1234678889999999999999999999998875 45543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.20 E-value=0.012 Score=37.62 Aligned_cols=83 Identities=11% Similarity=0.054 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---chhHHHHHHHHHHhcCCCc--chhhHHHHHHHHHhcCCHHHH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG---EVEFCVEMYYSVCKLGSCA--DVSTYKILIPAVSKAGMIDEA 99 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a 99 (217)
....+.+-|.+....|. ++..+.-.+..++++.+ +.++++.+++...+.. .| ....+-.+.-++.+.+++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666554 57777777777888877 6668888888887754 23 344555566677888888888
Q ss_pred HHHHHHHHhC
Q 035645 100 FRLLHNLVED 109 (217)
Q Consensus 100 ~~~~~~~~~~ 109 (217)
.+.++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888876
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.10 E-value=0.0053 Score=35.86 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=54.7
Q ss_pred CCCcccHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 112 NPFPSLYAPIIKGAFRRGQ---FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 112 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
+.+...+..+..++...++ .++|..++++..... +-+......+...+.+.|++++|...|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3456677777777765554 799999999998874 3367888888899999999999999999999865
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.99 E-value=0.021 Score=40.80 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCCcc---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CChHH
Q 035645 63 FCVEMYYSVCKLGSCAD---VSTYKILIPAVSKA-----GMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRR-GQFDD 133 (217)
Q Consensus 63 ~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~ 133 (217)
.|...+++..+. .|+ -..|..+...|.+. |+.++|...|++.++.+-.-+..++......+++. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 444455555442 233 34555566556553 66666666666666543211244555555555553 66666
Q ss_pred HHHHHHHHHhcCC
Q 035645 134 AFCFFSEIKIKGH 146 (217)
Q Consensus 134 a~~~~~~~~~~~~ 146 (217)
+.+.+++......
T Consensus 259 a~~~L~kAL~a~p 271 (301)
T 3u64_A 259 FDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHCCG
T ss_pred HHHHHHHHHcCCC
Confidence 6666666655433
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.96 E-value=0.019 Score=33.41 Aligned_cols=65 Identities=8% Similarity=-0.019 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHhcCc---hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 44 DLETFNSLIETICKSGE---VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433332 455555555554432 113444445555555555555555555555544
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.90 E-value=0.014 Score=36.04 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=45.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH---HHHHHHHHHhcCCCC--CHhHHHHHHHHHhcCC
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDD---AFCFFSEIKIKGHPP--NRPVYTTLITMCGRGG 164 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g 164 (217)
-........+.+-|......| .++..+--.+..++.+..+... ++.++..+...+ .| .....-.+.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 333344445555555554444 2444554455556666655444 666666655542 12 1223333445566666
Q ss_pred CHHHHHHHHHHHHHc
Q 035645 165 RFVEAANYLMEMTEM 179 (217)
Q Consensus 165 ~~~~a~~~~~~~~~~ 179 (217)
++++|.+.++.+.+.
T Consensus 89 ~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666653
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.055 Score=35.56 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=93.1
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 131 (217)
.....+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|....+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 44556789999999997766 3677899999999999999999999987642 55667777888998
Q ss_pred HHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 132 DDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
+....+-+.....| -++.....+...|+++++.++|.+ .|..|-. .......|-.+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 88777766665554 255666667778999999998854 3322221 12223356777777776543
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.64 E-value=0.053 Score=33.96 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=60.4
Q ss_pred hHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC------------
Q 035645 12 GRDLLVQG--LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC------------ 77 (217)
Q Consensus 12 ~~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------ 77 (217)
+.-.|+.+ ..-.|.+++..++..+..++. +..-+|-++--....-+-+-..++++.+-+. +.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~ 82 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVE 82 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHH
Confidence 34445554 445688888888888887642 3334444443333333444444444444321 11
Q ss_pred ------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 035645 78 ------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH 146 (217)
Q Consensus 78 ------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 146 (217)
.+...+...++.+...|+-+...+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 83 C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 12333344444444444444444444443221 133444444444444444444444444444444443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.63 E-value=0.048 Score=34.77 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCch------hHHHHHHHHHHhcCCCcchh-hHHHHHHH------HHhcCCHHHHHHHHHHHHhCC
Q 035645 44 DLETFNSLIETICKSGEV------EFCVEMYYSVCKLGSCADVS-TYKILIPA------VSKAGMIDEAFRLLHNLVEDG 110 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~ 110 (217)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .+...+.. +...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444444444444444555 5666666666553 444321 11111111 122367777777777776543
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 035645 111 HNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148 (217)
Q Consensus 111 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 148 (217)
-.. ...|......=.+.|+.+.|..++......+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 223 5566666666677778888888877777665443
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.57 E-value=0.058 Score=38.56 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcC-CCH
Q 035645 96 IDEAFRLLHNLVEDGHNPF---PSLYAPIIKGAFRR-----GQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRG-GRF 166 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 166 (217)
...|...+++..+.+ |+ ...|..+...|.+. |+.++|.+.|++....+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356777777777653 44 56889999999995 99999999999998864322467788888888885 999
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHHH
Q 035645 167 VEAANYLMEMTEMGLT--PISRCFDL 190 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~--~~~~~~~~ 190 (217)
+++.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999987766 66554443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.37 E-value=0.05 Score=33.59 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhH---HHHHHHHHHhcCCC-cchhhHHHHHHHHHhcCCHHHHH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEF---CVEMYYSVCKLGSC-ADVSTYKILIPAVSKAGMIDEAF 100 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~ 100 (217)
.+..+.+-|......|. |+..+--.+..++.+.+.... ++.+++.+.+.+.+ ......-.+.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444444443332 444444444455555544433 55555555543211 12222333444555566666666
Q ss_pred HHHHHHHhC
Q 035645 101 RLLHNLVED 109 (217)
Q Consensus 101 ~~~~~~~~~ 109 (217)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555554
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.27 E-value=0.097 Score=32.82 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN 112 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (217)
+...+...++.....|+-++-.+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 556677788888888999998888888644 35678888899999999999999999999999998853
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.061 Score=43.84 Aligned_cols=125 Identities=8% Similarity=0.028 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCc-hhHHHHHHHHHHhc------CCCc-c---
Q 035645 14 DLLVQGLLNAGY-LESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGE-VEFCVEMYYSVCKL------GSCA-D--- 79 (217)
Q Consensus 14 ~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~--- 79 (217)
..++..+...|+ .+.|..+|+++.+.. |...+ ...++..+...++ --+|++++.+..+. ...+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555655666 588999999998763 33332 2334444333332 22455555444321 1111 1
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 035645 80 -------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 80 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 141 (217)
......=...|...|+++-|..+-++..... +.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1123333455777899999999999988763 334569999999999999999999999886
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.18 E-value=0.12 Score=32.96 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=75.9
Q ss_pred CChhhHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCChh-hHHHHHHH------HHhcCchhHHHHHHHHHHhc
Q 035645 8 PPVRGRDLLVQGLLNAGYL------ESAKQMVNKMIKQGSDPDLE-TFNSLIET------ICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 8 ~~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~ 74 (217)
-|..+|=..+...-+.|+. ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677888888888888999 9999999998875 566532 12111111 22347899999999999765
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 035645 75 GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP 113 (217)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (217)
.-.. ...|......=.+.|+.+.|.+++......+..|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3332 6667777777788999999999999998876444
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.27 Score=40.13 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCc-hhHHHHHHHHHHhcCCCcchhh--HHHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCCCc---
Q 035645 49 NSLIETICKSGE-VEFCVEMYYSVCKLGSCADVST--YKILIPAVSKAG-MIDEAFRLLHNLVED------GHNPFP--- 115 (217)
Q Consensus 49 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~--- 115 (217)
..++..+...++ .+.|+.+|+++.... |...+ ...++..+...+ +--+|.+++++..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 456666666766 588999999998753 43333 233443333333 223455666554421 111111
Q ss_pred --------ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 116 --------SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 116 --------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
.....-.+.+...|+++-|+.+-++.... .|+ -.+|..|..+|...|+++.|.-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222245577889999999999998876 454 6899999999999999999999998873
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.03 E-value=0.25 Score=37.05 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=82.3
Q ss_pred chhhHHHHHHHHH---hcCCHHHHHHHHHHHHhC--CC-CCCc------------------ccHHHHHHHHHhcCChHHH
Q 035645 79 DVSTYKILIPAVS---KAGMIDEAFRLLHNLVED--GH-NPFP------------------SLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 79 ~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~--~~-~~~~------------------~~~~~ll~~~~~~g~~~~a 134 (217)
|...|..++.... ..|+.+.|...+.+.... |- -++. .+...++..+...|+++++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4455665555433 357888888888887754 21 1111 1123445667789999999
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCChhhHHHHHHHH
Q 035645 135 FCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT-----EMGLTPISRCFDLVTDGL 195 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~~~ 195 (217)
...+..+... .+.+...+..++.++.+.|+..+|.+.|+.+. +.|+.|+..+-...-..+
T Consensus 191 ~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 191 IAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9998888765 35578899999999999999999999999876 469999988655444434
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.85 E-value=0.056 Score=40.55 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHhHHHHHHH
Q 035645 84 KILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI-----KGHPPNRPVYTTLIT 158 (217)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~ 158 (217)
..++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|.+.|+.+.. .|+.|...+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445667778899999999999988765 66788999999999999999999999998754 499998766554433
Q ss_pred HH
Q 035645 159 MC 160 (217)
Q Consensus 159 ~~ 160 (217)
.+
T Consensus 254 il 255 (388)
T 2ff4_A 254 IL 255 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.80 E-value=0.13 Score=30.22 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 035645 130 QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGL 195 (217)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (217)
+.-++.+-+..+....+.|++.+..+.+++|-+.+++..|.++|+-++.+. .+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 445667777777777888899999999999999999999999998877543 23355677776543
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.77 E-value=4.8e-06 Score=63.15 Aligned_cols=185 Identities=15% Similarity=0.167 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHH
Q 035645 10 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPA 89 (217)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (217)
...|..+..+..+.+++.+|++-| .+. -|+..|..++.+..+.|.+++-+..+....+.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 345677777777777666665544 221 256667788888888888888888776665542 244455678888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC--------------------CCCC
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG--------------------HPPN 149 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~ 149 (217)
|.+.++..+..+++. .|+..-...+-.-|...|.++.|.-+|..+.+.. -.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888888766544432 3555555666666777777777766665433211 0135
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhh
Q 035645 150 RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVSL 214 (217)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (217)
+.||..+-.+|...+.+..|--.--.++ ....-...++..|...|.+++-..+++.-..+
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 5677777777777776665544332222 11112234556666777777766666655443
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.48 E-value=0.57 Score=40.43 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=95.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------------
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP---------------- 113 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 113 (217)
.++..+...+.++.+.++..... .+....-.+..++...|++++|...|.+.-. ++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 34555666666666655443322 2333345566778888999999999976421 1100
Q ss_pred -------CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 035645 114 -------FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN----RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLT 182 (217)
Q Consensus 114 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 182 (217)
-..-|..++..+.+.+.++.+.++-....+...+.+ ...|..+.+.+...|++++|...+..+.+...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 012367788888899999998888777665422212 136788889999999999999998877765432
Q ss_pred CChhhHHHHHHHHHhcCCchHH
Q 035645 183 PISRCFDLVTDGLKNCGKHDLA 204 (217)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a 204 (217)
......|+..++..|+.+.-
T Consensus 971 --~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhh
Confidence 34566777777766665543
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.32 E-value=0.65 Score=40.07 Aligned_cols=193 Identities=12% Similarity=0.032 Sum_probs=118.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCC----------------
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSC---------------- 77 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------- 77 (217)
..++..+.+.+..+.+.++..-. +-+...--.+..++...|++++|.+.|++... |+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 34566667777777776654332 22444445667788999999999999977521 110
Q ss_pred -------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 035645 78 -------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF----PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGH 146 (217)
Q Consensus 78 -------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 146 (217)
.-..-|..++..+.+.+.++.+.++-....+.....+ ...|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 0113467788899999999999888777665321111 12588899999999999999999988766533
Q ss_pred CCCHhHHHHHHHHHhcCCCH------------HHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCchHHHHH-HHHH
Q 035645 147 PPNRPVYTTLITMCGRGGRF------------VEAANYLMEMTEMG--LTPISRCFDLVTDGLKNCGKHDLAEKI-EQLE 211 (217)
Q Consensus 147 ~~~~~~~~~li~~~~~~g~~------------~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~ 211 (217)
-......|+..++..|.. ++..+++....+.. +...+.-|..|-.-+...|++..|-.+ ++.+
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 345566666666655544 44444443322111 111112244444444556666655444 5655
Q ss_pred hhh
Q 035645 212 VSL 214 (217)
Q Consensus 212 ~~~ 214 (217)
.++
T Consensus 1048 ~RL 1050 (1139)
T 4fhn_B 1048 SRY 1050 (1139)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.09 E-value=0.25 Score=29.04 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
+.=++.+-++.+......|++......+++|.+.+++..|+++++-++.. ..+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45566777777777788888888888888888888888888888877643 2223445655543
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.27 E-value=0.55 Score=29.27 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 035645 63 FCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKG 124 (217)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (217)
+..+-++.+......|++.+..+.+.+|-+.+++--|.++|+-.+..- .+....|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344445555555556666666666666666666666666666555331 2223345544443
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.24 E-value=0.56 Score=29.23 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 035645 96 IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLIT 158 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 158 (217)
.-+..+-++.+...++.|++.+....+++|-+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345566666666677777777777777777777777777777777654 2333445655544
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=1.5 Score=33.60 Aligned_cols=172 Identities=15% Similarity=0.175 Sum_probs=97.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCChhh--HHHHHHHHHhcCchhH--HHHHHHHHHh--cC-CC
Q 035645 6 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QGSDPDLET--FNSLIETICKSGEVEF--CVEMYYSVCK--LG-SC 77 (217)
Q Consensus 6 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~--~~~ll~~~~~~~~~~~--a~~~~~~~~~--~~-~~ 77 (217)
...+......++..|...|+++...+.+..+.+ +|..+...+ .+.++.........+. -..+.+.+.. .| +.
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 444556667777778888888877777666553 333222221 1222222222222221 1112211110 01 11
Q ss_pred c---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHh----cC
Q 035645 78 A---DVSTYKILIPAVSKAGMIDEAFRLLHNLVED--GHNPF---PSLYAPIIKGAFRRGQFDDAFCFFSEIKI----KG 145 (217)
Q Consensus 78 ~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~ 145 (217)
. .......|...+...|++.+|.+++..+... +.... ...+...++.|...+++..|..++.++.. ..
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 1223456778888889999999998887632 21111 23566677888889999999888887642 22
Q ss_pred CCCC--HhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 146 HPPN--RPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 146 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
..|+ ...+...+..+...+++.+|.+.|.+..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222 2456677777778888888887777664
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.10 E-value=0.0025 Score=48.81 Aligned_cols=125 Identities=14% Similarity=0.027 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHH
Q 035645 9 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIP 88 (217)
Q Consensus 9 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (217)
|...|..++.+..+.|.+++-...+...++..- ++..=+.|+-+|++.++..+..+++ -.||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 567789999999999999999999987776533 4455568999999999887744443 1255555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--------------------CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVED--------------------GHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 142 (217)
-|...|.++.|.-+|..+... ..-.++.||-.+-.+|...+.+.-|.-+--.+.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 666666666665555433211 012356778777777777777666655544443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.61 E-value=1.1 Score=27.80 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=32.9
Q ss_pred CCcccHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035645 113 PFPSLYAPIIKGAFRRGQF---DDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE 178 (217)
Q Consensus 113 ~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 178 (217)
|+..+--....++.+..+. .+++.++.++.+.+..-.....--+.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333344445544433 34555666555543111233344445556666666666666666665
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.16 E-value=2.1 Score=32.48 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHh---cCCCcchhh--HH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQ--GSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK---LGSCADVST--YK 84 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 84 (217)
++..+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.+... .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556666777777777777777776653 2222344556666667777777777777666532 121222111 00
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 035645 85 ILIPAVSKAGMIDEAFRLLHNLVE 108 (217)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~ 108 (217)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111122345666666666655543
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.10 E-value=1.4 Score=27.75 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=41.2
Q ss_pred CCCcccHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 035645 112 NPFPSLYAPIIKGAFRRGQF---DDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179 (217)
Q Consensus 112 ~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 179 (217)
.|+..+--....++.+..+. .++..+++++...+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34555544555666666543 456777777766432212334444556677888888888888877774
No 251
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=92.09 E-value=1.9 Score=29.22 Aligned_cols=181 Identities=8% Similarity=-0.033 Sum_probs=91.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVS 91 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 91 (217)
.+...++.|+.+.+..+++.+.+.|..++... -...+...+..|+.+- ++.+.+.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566788999999999888777665554321 1233444556676643 444555565544321 224455566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH---HHHHHHHHhcCCC
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPF---PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV---YTTLITMCGRGGR 165 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 165 (217)
..|+.+-+..+++.....+..++ ....+ .+...+..|+.+.+.. +.+.|..++... -...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQL----LLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHH----HHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 77887766666555432111221 12222 3344456666654444 444554443211 1223344456676
Q ss_pred HHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCchHHHHHHH
Q 035645 166 FVEAANYLMEMTEMGLTPISRC--FDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
.+-+. .+.+.|..++... -...+...+..|+.+-+.-+++
T Consensus 163 ~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 163 LSMVQ----LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 65444 3445565553321 1123333445666665555543
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.74 E-value=3.2 Score=31.15 Aligned_cols=167 Identities=12% Similarity=0.001 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---ChhhHHHHHHHHHhcC-chhHHHHHHHHHH----hcC-CCcch
Q 035645 11 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GSDP---DLETFNSLIETICKSG-EVEFCVEMYYSVC----KLG-SCADV 80 (217)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~----~~~-~~~~~ 80 (217)
.....+...|.+.|+.++..+++.....- +..| .......++..+.... ..+.-.++..+.. ... .....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999887542 1122 2344667888877643 3344444444333 211 00011
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhHH
Q 035645 81 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPF-----PSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--GHPPNRPVY 153 (217)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ 153 (217)
..=..++..|...|++.+|.+++.++.+.=...| ..+|..-++.|...+++.++...+...... .+.+++.+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1223688999999999999999998876311222 234666678889999999999999887542 232343322
Q ss_pred HH----HHHHHh-cCCCHHHHHHHHHHHH
Q 035645 154 TT----LITMCG-RGGRFVEAANYLMEMT 177 (217)
Q Consensus 154 ~~----li~~~~-~~g~~~~a~~~~~~~~ 177 (217)
.. -...+. ..++|..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22 123345 7899999888776553
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.61 E-value=3.6 Score=31.44 Aligned_cols=189 Identities=9% Similarity=0.024 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc-CCCcchhh--HHHHHHHHHhcCC
Q 035645 24 GYLESAKQMVNKMIK-----QGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL-GSCADVST--YKILIPAVSKAGM 95 (217)
Q Consensus 24 g~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~ll~~~~~~~~ 95 (217)
|+++.|.+.+-.+.+ .+...+......++..|...++++...+.+..+.+. |..+...+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888887766653 234446677888999999999999998888777543 33222221 2233333333443
Q ss_pred HHHH--HHHHHHHHhC--C-CCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC---HhHHHHHHHHHhc
Q 035645 96 IDEA--FRLLHNLVED--G-HNP---FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--GHPPN---RPVYTTLITMCGR 162 (217)
Q Consensus 96 ~~~a--~~~~~~~~~~--~-~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~ 162 (217)
.+.. ..+.+.+... | +.. .......|...+...|++.+|.+++..+... |..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3322 1222211111 1 111 1123356788899999999999999998642 32222 3577778889999
Q ss_pred CCCHHHHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 035645 163 GGRFVEAANYLMEMTE----MGLTPI--SRCFDLVTDGLKNCGKHDLAEKIEQLEV 212 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (217)
.+++..|..++++... ....|+ ...|...+..+...+++.+|-+.|..+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999988752 222222 2356677777788888888887765543
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.39 E-value=1.1 Score=31.63 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=51.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHH
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL--TPISRCFDLVTDG 194 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 194 (217)
....+.|.+++++.....-++.. +-|...-..+++.+|-.|+++.|.+-++...+... .|...+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 45667889999988888777663 44777778889999999999999998888776432 2333455555554
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.93 E-value=2.2 Score=27.67 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCh-------hhHHHHHHHHHhcCchhHHHHHHHHHH
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQ-GSDPDL-------ETFNSLIETICKSGEVEFCVEMYYSVC 72 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 72 (217)
.+-.-+..+...|.++.|.-+.+.+... +..|+. .++..+.+++...+++..|...|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445566677777777777776665432 112221 244556667777777777777777753
No 256
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=89.52 E-value=3.1 Score=27.24 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=84.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHHhcC
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVSKAG 94 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~ 94 (217)
+...+..|+.+.+..++..-...--..+..-++. +...++.|+.+- .+.+.+.|..++... -...+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3445677888887777643221100112222333 334455666544 444445565554321 223445556677
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH-HhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEI-KIKGHPPNRPVYTTLITMCGRGGRFVEAANYL 173 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 173 (217)
+.+-+..+++.-...-...+.... ..+...+..|+.+.+..+++.- .... ..+..-.+.+..+.........-.++.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 776665555432111001111111 2344556678776665555432 1110 122233344444443332233345666
Q ss_pred HHHHHcCCCCChhhHH--HHHHHHHhcCCchHHHHH
Q 035645 174 MEMTEMGLTPISRCFD--LVTDGLKNCGKHDLAEKI 207 (217)
Q Consensus 174 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~ 207 (217)
+.+.+.|..++..... .-+....+.|+.+-+.-+
T Consensus 162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 6677777766543211 233344455666555444
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.16 E-value=6 Score=30.04 Aligned_cols=97 Identities=7% Similarity=-0.143 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcC--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCcccHHHH--
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLG--SCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG-HNPFPSLYAPI-- 121 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l-- 121 (217)
+...+...|.+.|+++.|.+.|.++...- ...-...+-..+..+...+++..+...+++....- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56678888888999999999998886532 22334667788888888899998888888765321 11222221111
Q ss_pred --HHHHHhcCChHHHHHHHHHHHh
Q 035645 122 --IKGAFRRGQFDDAFCFFSEIKI 143 (217)
Q Consensus 122 --l~~~~~~g~~~~a~~~~~~~~~ 143 (217)
...+...+++..|-..|.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1223456788888887777654
No 258
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=88.56 E-value=1 Score=31.17 Aligned_cols=191 Identities=10% Similarity=-0.047 Sum_probs=97.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh-------HHHHHHHHH--hcCchhHHHHHHHHHHhcC---------CC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLET-------FNSLIETIC--KSGEVEFCVEMYYSVCKLG---------SC 77 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 77 (217)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 45556688999999899988877776665333 334444432 5677777666666543211 11
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc----------------HHHHHHHHHhcCChHHHHHHHHHH
Q 035645 78 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL----------------YAPIIKGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~ll~~~~~~g~~~~a~~~~~~~ 141 (217)
.....-.+.+...+..|+.+-+. .+.+.|..++... -...+...+..|+.+-+..+++.-
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVE----LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccCCCCHHHHHHHcCCHHHHH----HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 00001223445556677776444 4444555544332 223455566778766554444310
Q ss_pred HhcCCCCC---HhHHHHHHHHHhc-CCC---HHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCchHH
Q 035645 142 KIKGHPPN---RPVYTTLITMCGR-GGR---FVEAANYLMEMTEMGLTP----------ISRCFDLVTDGLKNCGKHDLA 204 (217)
Q Consensus 142 ~~~~~~~~---~~~~~~li~~~~~-~g~---~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a 204 (217)
..|..++ ..-.+.|..+... .+. .+...++++.+.+.|..+ |..-.+ -+...++.|+.+-+
T Consensus 164 -~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~~~v 241 (260)
T 3jxi_A 164 -HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGKIGIF 241 (260)
T ss_dssp -SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred -ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCCHHHH
Confidence 0444443 2233444444322 222 222235555555554333 222233 34444567888887
Q ss_pred HHHHHHHh
Q 035645 205 EKIEQLEV 212 (217)
Q Consensus 205 ~~~~~~~~ 212 (217)
.-+++.-.
T Consensus 242 ~~Ll~~g~ 249 (260)
T 3jxi_A 242 QHIIRREI 249 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCC
Confidence 77776543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.54 E-value=3.6 Score=26.69 Aligned_cols=116 Identities=11% Similarity=-0.008 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCc-------ccHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhH
Q 035645 83 YKILIPAVSKAGMIDEAFRLLHNLVED-GHNPFP-------SLYAPIIKGAFRRGQFDDAFCFFSEIKIK--GHPPNRPV 152 (217)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 152 (217)
+-.-+..+...+.++.|.-+.+.+... +..|+. .++..+..++...|++..|...|+...+. .+.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444555666677777776666654432 112222 13455566677777777777777765332 11101111
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 153 YTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 153 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
...+- ....... .....++...--.+..+|.+.+++++|..+++-+
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11000 0000000 0112233445556888888999999998887654
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.40 E-value=3.1 Score=25.84 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHHHhcCc---hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 42 DPDLETFNSLIETICKSGE---VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
.|+..+--....++.++.+ ..+++.+++.+.+.+........--+.-++.+.|++++|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4454444444444444443 3356666666655442122333444555666667777776666666654
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.75 E-value=4.7 Score=27.09 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFP-SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 149 (217)
.+...++.++|..|...|+-... .-|......+...|++++|.++|..-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34467888888888887765443 3566777788888999999999988888776663
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.69 E-value=2.9 Score=24.58 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=20.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 035645 125 AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEM 179 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 179 (217)
+.+.|++++|..+.+.. ..||...|-+|-. .+.|..+++...+..+...
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 34445555544443322 1344444444322 2344444444444444433
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.55 E-value=7.5 Score=29.23 Aligned_cols=164 Identities=9% Similarity=-0.052 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhc-CCCc---chhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCcccH--
Q 035645 46 ETFNSLIETICKSGEVEFCVEMYYSVCKL-GSCA---DVSTYKILIPAVSKAG-MIDEAFRLLHNLVEDGHNPFPSLY-- 118 (217)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 118 (217)
.....|...|.+.|+.++..+++.....- +..| .......+++.+.... ..+.-.++..+..+.. .-...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34567888999999999999988776431 0111 2345667888887643 3344444444433211 0112333
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----HhHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCCCChhh
Q 035645 119 ----APIIKGAFRRGQFDDAFCFFSEIKIKGHPPN-----RPVYTTLITMCGRGGRFVEAANYLMEMTE--MGLTPISRC 187 (217)
Q Consensus 119 ----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~ 187 (217)
..+...|...|++.+|..++..+.+.=-..| ..++..-++.|...+++.++...+..... ..+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2678899999999999999998876411111 35667778889999999999999988763 223344433
Q ss_pred HHH----HHHHHH-hcCCchHHHHHHHH
Q 035645 188 FDL----VTDGLK-NCGKHDLAEKIEQL 210 (217)
Q Consensus 188 ~~~----l~~~~~-~~~~~~~a~~~~~~ 210 (217)
-.. -...+. ..++|+.|...|-.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 222 223344 67888888877643
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.18 E-value=3.1 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=6.7
Q ss_pred HHhcCChHHHHHHHH
Q 035645 125 AFRRGQFDDAFCFFS 139 (217)
Q Consensus 125 ~~~~g~~~~a~~~~~ 139 (217)
+.+.|++++|..+.+
T Consensus 50 LmNrG~Yq~Al~l~~ 64 (116)
T 2p58_C 50 LMNRGDYASALQQGN 64 (116)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHcchhHHHHHHhcC
Confidence 334444444444433
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.79 E-value=4.3 Score=23.85 Aligned_cols=51 Identities=12% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKG 145 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 145 (217)
.+...|++++|..+.+.+ ..||...|-.+. -.+.|..+++..-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 344555555555443322 144444443332 234555555555554444443
No 266
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=84.35 E-value=8.1 Score=26.67 Aligned_cols=92 Identities=14% Similarity=0.052 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCC----ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQ--GSDP----DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
.-.-++.+....+|++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .++.......
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~ 97 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSG 97 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHH
Confidence 334577888999999999999987642 2332 112233334444444444455555555533 3456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 035645 87 IPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~ 107 (217)
+..+.+.|+.++|.++|=+..
T Consensus 98 v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHHH
Confidence 889999999999998886543
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.34 E-value=4.6 Score=23.78 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=20.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
+...|++++|..+.+.+. .||...|-.+.. .+.|..+++..-+..+..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344455555544433221 344444433322 3444444444444444443
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.11 E-value=7.5 Score=26.10 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=49.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 128 RGQFDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
.+....+.++|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4557799999999998877544 5678888888889999999999999999888888544
No 269
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=83.64 E-value=7.2 Score=26.14 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=8.4
Q ss_pred HHHHhcCCchHHHHHHH
Q 035645 193 DGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 193 ~~~~~~~~~~~a~~~~~ 209 (217)
....+.|+.+-+.-+.+
T Consensus 215 ~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH
Confidence 33345555555554443
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.19 E-value=11 Score=27.52 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=54.1
Q ss_pred HHhcCchhHHHHH----HHHHHhcCCCcchhhHHHHHHHHHhcCCHH-HHHHHHHHHH----hC--CCCCCcccHHHHHH
Q 035645 55 ICKSGEVEFCVEM----YYSVCKLGSCADVSTYKILIPAVSKAGMID-EAFRLLHNLV----ED--GHNPFPSLYAPIIK 123 (217)
Q Consensus 55 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~--~~~~~~~~~~~ll~ 123 (217)
+.+.|+...|-++ .+-..+.++++|......++..+.....-+ .=..+.+++. +. ....|+.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3444554443333 344456677777777777777776654321 1122222222 11 12345566677778
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 160 (217)
.|.+.+++.+|..-|- .|-.+....|..++.-+
T Consensus 145 ~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 8888888888777663 12233335554444433
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=83.07 E-value=8.4 Score=25.90 Aligned_cols=149 Identities=9% Similarity=-0.083 Sum_probs=77.8
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHh
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFR 127 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~ 127 (217)
+...++.|+.+.+..+++.+.+.|..++.. .-.+.+...+..|+.+- ++.+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 445567788888888888776666555432 12244555667777754 444455555544321 1234555667
Q ss_pred cCChHHHHHHHHHHHhcCCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCc
Q 035645 128 RGQFDDAFCFFSEIKIKGHPP---NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC---FDLVTDGLKNCGKH 201 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 201 (217)
.|+.+.+..+++.....+..+ +..-.+.+. ..+..|+.+ +++.+.+.|..++... -...+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 888877766666543211121 122222232 233455544 3444455565544321 22334444566777
Q ss_pred hHHHHHHH
Q 035645 202 DLAEKIEQ 209 (217)
Q Consensus 202 ~~a~~~~~ 209 (217)
+-+.-+++
T Consensus 164 ~~v~~Ll~ 171 (241)
T 1k1a_A 164 SMVQLLLQ 171 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665554
No 272
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=82.87 E-value=7.1 Score=26.75 Aligned_cols=189 Identities=11% Similarity=-0.033 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhc---CchhHHHHHHHHHHhcCCCc------
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDL-------ETFNSLIETICKS---GEVEFCVEMYYSVCKLGSCA------ 78 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~------ 78 (217)
+.+...++.|+.+.+..+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-...+...
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 3456677889999888888888877765543 2333444 44444 77777666665543322110
Q ss_pred ----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc---------------HHHHHHHHHhcCChHHHHHHHH
Q 035645 79 ----DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL---------------YAPIIKGAFRRGQFDDAFCFFS 139 (217)
Q Consensus 79 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~ll~~~~~~g~~~~a~~~~~ 139 (217)
|.. -.+.+...+..|+.+-+.. +.+.|..++... -...+...+..|+.+-+..+++
T Consensus 83 ~~~~d~~-g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 83 CTDEFYQ-GHSALHIAIEKRSLQCVKL----LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCSTTTT-TCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccc-CCCHHHHHHHcCCHHHHHH----HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 111 2234455566777655444 444454443321 1234455566787765544443
Q ss_pred HHHhcCCCCC---HhHHHHHHHHHh-cCCCHH---HHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCch
Q 035645 140 EIKIKGHPPN---RPVYTTLITMCG-RGGRFV---EAANYLMEMTEMGLTP----------ISRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 140 ~~~~~~~~~~---~~~~~~li~~~~-~~g~~~---~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~ 202 (217)
.- ..|..++ ..-.+.|..+.. ..+..+ ...++.+.+.+.|..+ |..-.+ -+...+..|+.+
T Consensus 158 ~~-~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~~ 235 (256)
T 2etb_A 158 NP-HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT-PLKLAAKEGKIE 235 (256)
T ss_dssp CS-SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCC-HHHHHHHTTCHH
T ss_pred cc-ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCC-HHHHHHHhCCHH
Confidence 10 0444433 223334444432 255554 1122334444443333 222222 334445667877
Q ss_pred HHHHHHHHH
Q 035645 203 LAEKIEQLE 211 (217)
Q Consensus 203 ~a~~~~~~~ 211 (217)
-+.-+++.-
T Consensus 236 ~v~~Ll~~g 244 (256)
T 2etb_A 236 IFRHILQRE 244 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCC
Confidence 777766553
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=82.49 E-value=11 Score=26.58 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=7.7
Q ss_pred HHHHHhcCChHHHHHHHH
Q 035645 122 IKGAFRRGQFDDAFCFFS 139 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~ 139 (217)
+...+..|+.+-+..+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 333444455444444433
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=82.06 E-value=11 Score=26.51 Aligned_cols=144 Identities=7% Similarity=-0.040 Sum_probs=71.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHHhc
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVSKA 93 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~ 93 (217)
.+...+..|+.+.+..+++ .|..++...-.+.+...+..|+.+-+.. +.+.|..++... -.+.+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 4455566788766655544 4444433322334555566677654433 344455444321 12344455667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHhHHHHHHHHHhcCCCHHHH
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP-NRPVYTTLITMCGRGGRFVEA 169 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a 169 (217)
|+.+-+.-+++. |..++. ..+...+...+..|+.+-+..++ +.|..+ +...-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----TTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCccccccCCccHHHHHHHcChHHHH
Confidence 777655544443 333332 22234555666777765544443 444333 211223334444566777666
Q ss_pred HHHHHH
Q 035645 170 ANYLME 175 (217)
Q Consensus 170 ~~~~~~ 175 (217)
.-+++.
T Consensus 178 ~~Ll~~ 183 (285)
T 3kea_A 178 ILLLDY 183 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 555544
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.74 E-value=13 Score=26.99 Aligned_cols=161 Identities=9% Similarity=-0.046 Sum_probs=83.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC---CCC--hhhHHHHHHHHHhcCchhHHHHH----HHHHHhcCCCcchhhHHHHH
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGS---DPD--LETFNSLIETICKSGEVEFCVEM----YYSVCKLGSCADVSTYKILI 87 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll 87 (217)
+......|++=+|.+.++....+-+ +.+ ......-...+.+.|+...|-++ .+-..+.+.+++......++
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444556677666666655433210 100 11111222334456665554443 45555667788888888888
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----hCC--CCCCcccHHHHHHHHHhcCChHHHHHHHH----------------HHHhc
Q 035645 88 PAVSKAGMID-EAFRLLHNLV----EDG--HNPFPSLYAPIIKGAFRRGQFDDAFCFFS----------------EIKIK 144 (217)
Q Consensus 88 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----------------~~~~~ 144 (217)
..+.....-+ .=.++.+.+. +.| ...++.....+...|.+.|++.+|..-|- ...+.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 7776643211 1123333332 222 22456677788888888888888877552 11111
Q ss_pred --CCCCCHhHH-HHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 145 --GHPPNRPVY-TTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 145 --~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
|.+-....| ...+-.|...|+...|..+++...
T Consensus 180 ~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 221111111 122333456788888888888765
No 276
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=81.53 E-value=8.8 Score=25.68 Aligned_cols=174 Identities=13% Similarity=0.070 Sum_probs=78.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh---hHHHHHHHHH
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLE--TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS---TYKILIPAVS 91 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~ 91 (217)
+...++.|+++.+..+++ .|..++.. .-...+...+..|+.+-+.. +.+.|..++.. .-...+...+
T Consensus 13 l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred HHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHH
Confidence 344567788766655544 44444322 11234555666777654443 44444333221 1224455556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhcCCCH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITMCGRGGRF 166 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~ 166 (217)
..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..+ .+.|..++. .-.+.+..+....+.
T Consensus 85 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L----l~~~~~~~~~~~~g~t~l~~a~~~~~~- 155 (240)
T 3eu9_A 85 RQGHLSMV----VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL----IAKGQDVDMMDQNGMTPLMWAAYRTHS- 155 (240)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHHCCS-
T ss_pred HcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHH----HhcCCCccccCCCCCcHHHHHHHhCCh-
Confidence 66776544 44445554443221 11234555666776644444 344444332 222333333323222
Q ss_pred HHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCchHHHHHHHH
Q 035645 167 VEAANYLMEMTEMGLTPISRC---FDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
....+ .+.+.|..++... -...+...+..|+.+-+.-+++.
T Consensus 156 ~~~~~---~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 156 VDPTR---LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp STTHH---HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 22222 2344444433221 11234444556776666555543
No 277
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=81.04 E-value=1.8 Score=26.96 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=42.6
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcC-chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHH
Q 035645 35 KMIKQGSDPDLETFNSLIETICKSG-EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE 98 (217)
Q Consensus 35 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (217)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|-+.+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3556777755442 34455555555 677888889888877766777777777788888776653
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.92 E-value=8.2 Score=24.32 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=35.2
Q ss_pred CCChhhHHHHHHHHHhcCc---hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 42 DPDLETFNSLIETICKSGE---VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
.|+..+--....++.++.+ ..+++.+++.+.+.+......-.-.+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455444444445555443 3356666666655432222233334444566666666666666666654
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=80.55 E-value=12 Score=25.87 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=56.8
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhc--CCCc----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKL--GSCA----DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
--++.+....++++|+++.++..+. +.++ ........+..-.....-.-+..+.+++. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 3478888899999999999877532 2221 11222233333333333344445555553 3 344555667778
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 035645 124 GAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~ 144 (217)
.+.+.|+.++|.++|-+....
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHH
Confidence 889999999999999877643
No 280
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=80.48 E-value=2.1 Score=27.00 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHH
Q 035645 34 NKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE 98 (217)
Q Consensus 34 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (217)
+.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 4466778776554 334555566667778899999999887777788888888888988887653
No 281
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=80.39 E-value=2.3 Score=26.80 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 34 NKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 34 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 34566777765542 33444555555 6688888888887776667777777777888877654
No 282
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=78.57 E-value=12 Score=24.93 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=51.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHHHhc
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAVSKA 93 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~ 93 (217)
.+...++.|+++....++..-...-..++..-.+. +...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 35666778888888877765322111122222223 3334455555433 3344445444321 112233444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHH
Q 035645 94 GMIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFF 138 (217)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~ 138 (217)
|+.+- ++.+.+.|..++... -...+...+..|+.+.+..++
T Consensus 84 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 84 GXDEI----VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 66543 333444444332211 112344445566665444333
No 283
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.39 E-value=31 Score=29.41 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=72.1
Q ss_pred HHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH--HHHHHHHhcCChH
Q 035645 55 ICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYA--PIIKGAFRRGQFD 132 (217)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~ 132 (217)
+.-.|+-+....++..+.+. ..-+..-+-.+.-++...|+.+.+..+.+.+.... .|...--. .+.-+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 33445555555565555442 11122222233333446677777777777776542 22222111 2234456667777
Q ss_pred HHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCc-hHHHHHHHHH
Q 035645 133 DAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKH-DLAEKIEQLE 211 (217)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 211 (217)
...++++.+.+.. ..+..-...+.-++...|+.+.+.+++..+.+.+ .|...--..+..+....|.. .++.+++..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 7776777776541 2223333333334444555555666665444433 34444333344444434333 3444444433
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=78.27 E-value=9.1 Score=24.75 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 035645 99 AFRLLHNLVEDGHNPFP-SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP 148 (217)
Q Consensus 99 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 148 (217)
+.++|..|...++-... .-|......+-..|++.+|.++|..-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44555555555543332 234444555555566666666666555554444
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.66 E-value=15 Score=25.32 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=7.1
Q ss_pred HHHHHHHHHHcCCCC
Q 035645 169 AANYLMEMTEMGLTP 183 (217)
Q Consensus 169 a~~~~~~~~~~~~~~ 183 (217)
..++.+.+.+.|..+
T Consensus 198 ~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 198 VEAITHLLLDHGADV 212 (285)
T ss_dssp HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCCC
Confidence 344444455555444
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.25 E-value=12 Score=23.92 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 035645 134 AFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTP 183 (217)
Q Consensus 134 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 183 (217)
+.++|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444433222 2333344444444444444444444444444444
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=77.24 E-value=10 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455666666666666666666653
No 288
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=77.13 E-value=14 Score=27.47 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcc---hhhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCC
Q 035645 47 TFNSLIETICKSGEVEFCVEMYYSVCKLGSCAD---VSTYKILIPAVSKAGMI--DEAFRLLHNLVEDGHNP 113 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~ 113 (217)
....++.-|...|+.++|.+.++++.. |+ ......++......++. +.+..++..+...++-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 456788899999999999999999854 32 22333333333333332 44566777777765433
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.88 E-value=17 Score=25.04 Aligned_cols=112 Identities=9% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHH
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLE---TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIP 88 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~ 88 (217)
++.+...++.|+++.+..++ +.|..++.. .-...+...+..|+.+- ++.+.+.|..++.. .-...+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHH
Confidence 35566677888887665554 444444322 11234445556676644 44444555544431 1123444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCChHHHHHHH
Q 035645 89 AVSKAGMIDEAFRLLHNLVEDGHNPFPS---LYAPIIKGAFRRGQFDDAFCFF 138 (217)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~ 138 (217)
..+..|+.+- ++.+.+.|..++.. .++ .+...+..|+.+.+..++
T Consensus 78 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll 125 (285)
T 1wdy_A 78 LAAIAGSVKL----LKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLY 125 (285)
T ss_dssp HHHHHTCHHH----HHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHH
Confidence 4556666653 44444555444322 222 344455667765444433
No 290
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=75.17 E-value=11 Score=26.19 Aligned_cols=189 Identities=9% Similarity=-0.026 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-------ChhhHHHHHHHHH--hcCchhHHHHHHHHHHh---------cCC
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDP-------DLETFNSLIETIC--KSGEVEFCVEMYYSVCK---------LGS 76 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~---------~~~ 76 (217)
+.+...++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++.-.. .+.
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~ 94 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASY 94 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCC
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccc
Confidence 44555667899999999998877665433 3334445555543 34777766666655322 111
Q ss_pred C-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc----------------HHHHHHHHHhcCChHHHHHHHH
Q 035645 77 C-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL----------------YAPIIKGAFRRGQFDDAFCFFS 139 (217)
Q Consensus 77 ~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~ll~~~~~~g~~~~a~~~~~ 139 (217)
. .|..-. +.+...+..|+.+-+..+ .+.|..++... -...+...+..|+.+-+..+++
T Consensus 95 ~~~d~~g~-tpL~~A~~~g~~~~v~~L----l~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 95 TDSYYKGQ-TALHIAIERRNMTLVTLL----VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp CSTTTTTC-CHHHHHHHTTCHHHHHHH----HHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCC-CHHHHHHHcCCHHHHHHH----HHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1 122222 334445567776654444 44454443321 1234455566777765544443
Q ss_pred HHHhcCCCCCH---hHHHHHHHHHhcC-CCH---HHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCch
Q 035645 140 EIKIKGHPPNR---PVYTTLITMCGRG-GRF---VEAANYLMEMTEMGLTP----------ISRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 140 ~~~~~~~~~~~---~~~~~li~~~~~~-g~~---~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~ 202 (217)
.- ..|..++. .-.+.|..+.... +.. +...++++.+.+.|..+ |..-.+ -+...++.|+.+
T Consensus 170 ~~-~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~T-pL~~A~~~g~~~ 247 (273)
T 2pnn_A 170 NS-WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT-PLALAASSGKIG 247 (273)
T ss_dssp CS-SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCHH
T ss_pred cc-cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC-HHHHHHHhChHH
Confidence 10 04444332 2223333333221 112 22234555555544333 222223 334445677777
Q ss_pred HHHHHHHH
Q 035645 203 LAEKIEQL 210 (217)
Q Consensus 203 ~a~~~~~~ 210 (217)
-+.-+++.
T Consensus 248 iv~~Ll~~ 255 (273)
T 2pnn_A 248 VLAYILQR 255 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 77666654
No 291
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.07 E-value=22 Score=26.06 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCchhHHHHHHH
Q 035645 47 TFNSLIETICKSGEVEFCVEMYY 69 (217)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~ 69 (217)
+|.++..-|.+.+++++|++++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 44556666788888888888764
No 292
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=74.94 E-value=2.2 Score=26.38 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=21.2
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 333333344445555555555444444444444445555555443
No 293
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=74.84 E-value=15 Score=23.98 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh---hHHHHHHHHHh-cC
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDL-ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS---TYKILIPAVSK-AG 94 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~-~~ 94 (217)
.++.|+++....++.. +..... ..-.+.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3456777765555432 211111 111234444455565555555666666666555432 12223222222 22
Q ss_pred CHHHHHHHHHHHHhCCCCCCc
Q 035645 95 MIDEAFRLLHNLVEDGHNPFP 115 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~ 115 (217)
+.....++.+.+.+.|..++.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSS
T ss_pred chhhHHHHHHHHHHCCCCCCc
Confidence 333445566666666655543
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.59 E-value=14 Score=23.52 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKM 36 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m 36 (217)
.+.++.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 445566666666666666666665
No 295
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.68 E-value=23 Score=25.65 Aligned_cols=162 Identities=13% Similarity=0.007 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH---
Q 035645 26 LESAKQMVNKMIKQGSDPD-LETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR--- 101 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~--- 101 (217)
+++.+.-++.-++.|---. ...|.++..-|.+.+++++|++++..- ...+.+.|+...|.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHH
Confidence 4444444444444441111 224455555555556666665554322 223445566655444
Q ss_pred -HHHHHHhCCCCCCcccHHHHHHHHHhcCChH-HHHHHHHHHHh----cCC--CCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 035645 102 -LLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD-DAFCFFSEIKI----KGH--PPNRPVYTTLITMCGRGGRFVEAANYL 173 (217)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 173 (217)
+++-+.+.+.+++......++..+.....-+ .-.++.+.+.+ .|- .-++.....+...|.+.|++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3555556788888877777887776644222 22344444443 221 235677788888888999998888776
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhc---CCchHHHH
Q 035645 174 MEMTEMGLTPISRCFDLVTDGLKNC---GKHDLAEK 206 (217)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~ 206 (217)
- .|-.-|...+..++.-+... |...++--
T Consensus 158 i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl 189 (312)
T 2wpv_A 158 M----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE 189 (312)
T ss_dssp H----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred H----hCCCccHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 3 22111345566555555554 65555433
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.27 E-value=26 Score=25.99 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
....+|.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 35678888999999999999998875
No 297
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.06 E-value=22 Score=25.15 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=32.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
..+.|.+++++.....-.+.+ +-|...-..++..+|-.|+|+.|..-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666666555553 445555556666666667776666666665543
No 298
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=72.89 E-value=18 Score=24.11 Aligned_cols=183 Identities=7% Similarity=-0.094 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCchhHHHHHHHHHHhcCC----CcchhhHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDL---ETFNSLIETICKSGEVEFCVEMYYSVCKLGS----CADVSTYKILI 87 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll 87 (217)
+.+...++.|+.+.+..+++. .|..++. .-++ .+...+..|+.+-+..+++.-..... ..+.. -.+.+
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-g~t~L 79 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-GQTAL 79 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTT-TCCHH
T ss_pred CHHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCC-CcCHH
Confidence 345566778887776666543 2443332 2222 34445566776665555543211100 01112 22344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcc---------------cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh-
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPS---------------LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP- 151 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 151 (217)
...+..|+.+-+. .+.+.|..++.. .-...+...+..|+.+-+..++ +.|..++..
T Consensus 80 ~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d 151 (232)
T 2rfa_A 80 HIAVINQNVNLVR----ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI----EHGADIRAQD 151 (232)
T ss_dssp HHHHHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH----HTTCCTTCCC
T ss_pred HHHHHcCCHHHHH----HHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCCC
Confidence 5556667765444 444445444332 1123445556677765554444 455554421
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 152 -VYTTLITMCGRGGRFVEAANYLMEMTEMGLTP---------ISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 152 -~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
.-.+.+...+..|+.+-+..+++.+.+.|..+ |..-.+. +...++.|+.+-+.-+++.-
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 11233455567888888888888888777543 2333333 44445678887777776654
No 299
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=72.85 E-value=10 Score=23.45 Aligned_cols=21 Identities=10% Similarity=0.309 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNK 35 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~ 35 (217)
+.+...++.|+.+.+..+++.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHHHhCCHHHHHHHHHh
Confidence 344555667777777777766
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.77 E-value=46 Score=28.33 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcC
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS----RCFDLVTDGLKNCG 199 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 199 (217)
.-|..++..+-+.+-++-+.++-+...+.--.-|. ..+..++++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36778888888888888888888777753211122 35667777766544
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=70.87 E-value=6.3 Score=20.51 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
++|.+.|.+|++..-.++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554433233344555555554
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=70.81 E-value=17 Score=24.77 Aligned_cols=94 Identities=14% Similarity=-0.040 Sum_probs=52.3
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhh-------HHHHHHHHH--hcCCHHHHHHHHHHHHhC---------CCC-
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVST-------YKILIPAVS--KAGMIDEAFRLLHNLVED---------GHN- 112 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~---------~~~- 112 (217)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-... .+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4455677999988888887777666555332 233433332 567777776666654331 111
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 035645 113 PFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR 150 (217)
Q Consensus 113 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 150 (217)
.+..-.+ .+...+..|+.+-+..++ +.|..++.
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~ 121 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELLV----EKGADVHA 121 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHHH----HTTCCTTC
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHHH----hCCCCcCc
Confidence 1112223 445556678876554444 45555543
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=70.72 E-value=17 Score=22.80 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=30.0
Q ss_pred HHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 035645 70 SVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQF 131 (217)
Q Consensus 70 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 131 (217)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|-.
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344555554432 223333444444 445666666666655444444444455566555543
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.26 E-value=19 Score=23.27 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 134 AFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 134 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
+.++|..|..+|+-.. ...|......+-..|++.+|.++|..-++.+-.|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5566777766665433 4555666666667777777777777777766666443
No 305
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.20 E-value=18 Score=23.02 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 035645 97 DEAFRLLHNLVEDGHNPFP-SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 149 (217)
+++.++|..|...++-... .-|......+...|++++|.++|..-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4478999999988776543 3577778888899999999999999888877774
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.17 E-value=13 Score=25.36 Aligned_cols=84 Identities=19% Similarity=0.097 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhc-----CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHHH
Q 035645 63 FCVEMYYSVCKL-----GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP-SLYAPIIKGAFRRGQFDDAFC 136 (217)
Q Consensus 63 ~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~ 136 (217)
.-..++++..+. ...-|..-....+ -|.+. .+.+..+|..|...++-... .-|......+...|++.+|..
T Consensus 95 ~L~~lLErc~~~F~~~~rYknD~RyLklWl-~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 171 (223)
T 4aez_C 95 GLVTLLERCTREFVRNPLYKDDVRYLRIWM-QYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADE 171 (223)
T ss_dssp CHHHHHHHHHHHTTTCGGGTTCHHHHHHHH-HHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHH-HHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345566665433 2333443333333 33332 35777999999998876554 457788888999999999999
Q ss_pred HHHHHHhcCCCCC
Q 035645 137 FFSEIKIKGHPPN 149 (217)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (217)
+|..-++.+-.|-
T Consensus 172 Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 172 VYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHHTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 9999988877774
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=69.98 E-value=18 Score=22.82 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 34 NKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 34 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
+.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3455667664433 33455555566667788888888877666666666666666777666553
No 308
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=68.61 E-value=18 Score=22.31 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHhcCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 035645 71 VCKLGSCADVSTYKILIPAVSKAG-MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132 (217)
Q Consensus 71 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 132 (217)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-..
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 44455554432 223444444444 44556666666666554444444444555665555443
No 309
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=67.71 E-value=20 Score=22.57 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcC-chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHH
Q 035645 34 NKMIKQGSDPDLETFNSLIETICKSG-EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 34 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
+.+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566676655442 33444555555 56678888888877666666666666667777766554
No 310
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=67.63 E-value=20 Score=22.39 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 035645 16 LVQGLLNAGYLESAKQMVN 34 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~ 34 (217)
.+...++.|+.+.+..+++
T Consensus 11 ~l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444456677666655543
No 311
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=67.54 E-value=22 Score=22.83 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=45.4
Q ss_pred HHHHHHHHHH-HhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhc--CCCcchhhHHHHHHHHHhcCCHH
Q 035645 26 LESAKQMVNK-MIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKL--GSCADVSTYKILIPAVSKAGMID 97 (217)
Q Consensus 26 ~~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~ 97 (217)
.+.+.+-+.+ +.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3444444444 34567776443 345566666767777888888888776 55566666666667777777554
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=67.35 E-value=32 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
....++.-|...|+.++|...++++.
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34678899999999999999998874
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=67.06 E-value=21 Score=22.50 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=13.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 035645 121 IIKGAFRRGQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 121 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 149 (217)
++..+...+..-.|.++++.+.+.+...+
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is 60 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTS 60 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCC
Confidence 33444444444445555555544433333
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.89 E-value=24 Score=22.74 Aligned_cols=48 Identities=2% Similarity=0.041 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHhhCCCCC--ChhhHHHHHH-H-----HHhcCchhHHHHHHHHH
Q 035645 24 GYLESAKQMVNKMIKQGSDP--DLETFNSLIE-T-----ICKSGEVEFCVEMYYSV 71 (217)
Q Consensus 24 g~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~ 71 (217)
|++-+|.++|+..-.....+ ....|..||. . ..+.|+...|..++.+.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55556666665555443333 3334444444 1 22345555555555544
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=65.29 E-value=22 Score=22.97 Aligned_cols=126 Identities=15% Similarity=0.050 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAVS 91 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~ 91 (217)
.+...++.|+.+-+..+ .+.|..++... -...+...+..|+.+-+..+++. .+..++.. .-...+...+
T Consensus 42 ~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~ 114 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKAL----IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAA 114 (201)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHH
T ss_pred HHHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHHH
Confidence 44555567776555444 45565554322 11233444566776655555433 22222211 1113344556
Q ss_pred hcCCHHHHHHHHHHH-HhCCCCCCcccHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCH
Q 035645 92 KAGMIDEAFRLLHNL-VEDGHNPFPSLYAPIIKGAFRRGQ-FDDAFCFFSEIKIKGHPPNR 150 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~ 150 (217)
..|+.+-+..+++.- ...+ ..+..-.+.+..+. ..++ ...-.++.+.+.+.|..++.
T Consensus 115 ~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 115 EKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCCc
Confidence 677776555554432 1111 12223334444443 4444 33345667777777766653
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=65.13 E-value=22 Score=22.17 Aligned_cols=63 Identities=8% Similarity=-0.085 Sum_probs=40.5
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 035645 69 YSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFD 132 (217)
Q Consensus 69 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 132 (217)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|-..
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3456667665543 33455555556666678888888887765556666666677777777654
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=64.86 E-value=25 Score=22.55 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=25.3
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHhHHHHHHHHHhcCC
Q 035645 108 EDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIK--GHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 108 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 164 (217)
+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 345444322 234445555555555556666655544 33334333333334444444
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.43 E-value=67 Score=27.39 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=61.9
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------
Q 035645 51 LIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNP----------------- 113 (217)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 113 (217)
++..+...+.++-+.++...+. .+...--.+..+|...|++++|..+|++.-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 4455555565555444332221 2222223455566666777777766664321 1110
Q ss_pred ------CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----hHHHHHHHHHhcCC
Q 035645 114 ------FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR----PVYTTLITMCGRGG 164 (217)
Q Consensus 114 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 164 (217)
...-|..++..+-+.+.++.+.++-+...+.--..|. ..|+.++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124788999999999999999998888765222232 36677777666543
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=64.39 E-value=26 Score=22.59 Aligned_cols=49 Identities=10% Similarity=-0.048 Sum_probs=26.4
Q ss_pred CchhHHHHHHHHHHhcCCCc--chhhHHHHHH-H-----HHhcCCHHHHHHHHHHHH
Q 035645 59 GEVEFCVEMYYSVCKLGSCA--DVSTYKILIP-A-----VSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~ 107 (217)
|++-+|.++++..-.....+ ....|..||. + ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666664433333 3444555555 1 233566666666666554
No 320
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=63.53 E-value=23 Score=23.48 Aligned_cols=173 Identities=7% Similarity=-0.062 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh-----hHHHHHHHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS-----TYKILIPAV 90 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~ 90 (217)
.+...++.|+.+.+..+++.-.......+..-.+. +...+..|+.+- .+.+.+.|..++.. .-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP-LHWSVSFQAHEI----TSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCH-HHHHHHcCCHHH----HHHHHhccccccccccCCCCCCCHHHHH
Confidence 35566778888887777765332211123333333 333445566544 44444444222221 112344445
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhc
Q 035645 91 SKAGMIDEAFRLLHNLVEDG--HNPF---PSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITMCGR 162 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~ 162 (217)
+..|+.+- ++.+.+.| ..++ ....+ .+...+..|+.+-+..++ +.|..++. .-.+. +...+.
T Consensus 80 ~~~~~~~~----~~~Ll~~g~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~-L~~A~~ 149 (228)
T 2dzn_A 80 CSVGNLEV----VKSLYDRPLKPDLNKITNQGVT-CLHLAVGKKWFEVSQFLI----ENGASVRIKDKFNQIP-LHRAAS 149 (228)
T ss_dssp HHHCCHHH----HHHHHSSSSCCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH----HTTCCSCCCCTTSCCH-HHHHHH
T ss_pred HHcCCHHH----HHHHHhCCCCcccccCCcCCCC-HHHHHHHcCCHhHHHHHH----HcCCCccccCCCCCCH-HHHHHH
Confidence 55666553 44444444 2222 11222 344455667766544444 44544432 12222 333445
Q ss_pred CCCHHHHHHHHHHHHHcC-CCCC---hhhHHHHHHHHHhcCCchHHHHHH
Q 035645 163 GGRFVEAANYLMEMTEMG-LTPI---SRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
.|+.+-+ +.+.+.| ..++ ..-.+ .+...+..|+.+-+..++
T Consensus 150 ~~~~~~v----~~Ll~~g~~~~~~~d~~g~t-~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 150 VGSLKLI----ELLCGLGKSAVNWQDKQGWT-PLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp TTCHHHH----HHHHTTTCCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHH----HHHHhcCcccccCcCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 6665433 3344444 3222 22222 333444567766666555
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=63.12 E-value=17 Score=19.95 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcC-chhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC
Q 035645 35 KMIKQGSDPDLETFNSLIETICKSG-EVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM 95 (217)
Q Consensus 35 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (217)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455666655433 33444554443 455666777777665544555565556666655554
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=62.86 E-value=33 Score=25.08 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--chhHHHHHHHHHHhcCCCc
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG--EVEFCVEMYYSVCKLGSCA 78 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~ 78 (217)
...++.-|...|+.++|...++++...... ......++......+ .-+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~--~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL--FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 567888999999999999998887422111 111122222222222 2345666677776655443
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.49 E-value=27 Score=22.17 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM--IDEAFRLLHNLVEDGH 111 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 111 (217)
...++.-|...|+.++|.+.++++... ......+...+..++-+.++ .+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 456788888889999999998888532 11223444555555555332 3456677777776654
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=61.99 E-value=27 Score=21.99 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=25.4
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCC
Q 035645 106 LVEDGHNPFPSLYAPIIKGAFRRG-QFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 164 (217)
+.+.|+.++.. -..++..+...+ ..-.|.+++..+.+.+...+..|.-.-++.+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44445444332 223344444433 44455566665555544444433333334444444
No 325
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=61.27 E-value=15 Score=22.85 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCC
Q 035645 120 PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 120 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 164 (217)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444445556666666655544444433333334443333
No 326
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=60.99 E-value=21 Score=21.85 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSG 59 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 59 (217)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444444445555555555555544444444444444444444
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=60.84 E-value=18 Score=22.41 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=28.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
.++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555555555666777777776655555666655555666665544
No 328
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=60.47 E-value=49 Score=24.53 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCc--hhHHHHHHHHHHhcCCC
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD---LETFNSLIETICKSGE--VEFCVEMYYSVCKLGSC 77 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~ 77 (217)
.-..++.-|...|++++|.+.++++.. |+ ......++......++ -+.+-.++..+...++-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 456889999999999999999999853 33 2223333333333332 24455666666665543
No 329
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=59.14 E-value=24 Score=22.74 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
...++.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4456777777777777777777764
No 330
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.37 E-value=36 Score=22.31 Aligned_cols=17 Identities=6% Similarity=-0.351 Sum_probs=7.5
Q ss_pred CcccHHHHHHHHHhcCC
Q 035645 114 FPSLYAPIIKGAFRRGQ 130 (217)
Q Consensus 114 ~~~~~~~ll~~~~~~g~ 130 (217)
+..+-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33344444444444444
No 331
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=57.37 E-value=37 Score=22.06 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=83.6
Q ss_pred HHHhcCchhHHHHHHHHHHhcCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHh-c
Q 035645 54 TICKSGEVEFCVEMYYSVCKLGSCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPS---LYAPIIKGAFR-R 128 (217)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~-~ 128 (217)
..++.|+.+....++.. +... +...-.+.+...+..++.+.-.++.+.+.+.|..++.. -.+.|..++.. .
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 34567888876655542 3221 11222355666667787777777888888888776653 23333333322 2
Q ss_pred CChHHHHHHHHHHHhcCCCCCHh---HHHHHHHHHhcCCCH-HHHHHHHHHHHH-cCCCCChhhH--HHHHHHHHhcCCc
Q 035645 129 GQFDDAFCFFSEIKIKGHPPNRP---VYTTLITMCGRGGRF-VEAANYLMEMTE-MGLTPISRCF--DLVTDGLKNCGKH 201 (217)
Q Consensus 129 g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~~~~--~~l~~~~~~~~~~ 201 (217)
.+.....++.+.+.+.|..++.. -.++.+...+..+.. .....+++.+.+ .|..++.... .+-+....+.|..
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~ 167 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH
Confidence 34455567788888888776642 221223333333332 344567777777 7776654321 1233344455665
Q ss_pred hHHHHHHHHHh
Q 035645 202 DLAEKIEQLEV 212 (217)
Q Consensus 202 ~~a~~~~~~~~ 212 (217)
+-..-+.+...
T Consensus 168 ~~v~~L~~~~~ 178 (186)
T 3t8k_A 168 IALKMMEDYIK 178 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444433
No 332
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.00 E-value=31 Score=21.12 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM--IDEAFRLLHNLVEDGH 111 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 111 (217)
...++.-|...|+.++|.+.++++.... .....+...+..++-+.+. .+.+..++..+.+.|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567778888888888888888875321 1123444555555555432 3556677777776654
No 333
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=56.79 E-value=51 Score=23.53 Aligned_cols=150 Identities=12% Similarity=0.021 Sum_probs=67.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHHH
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDL---ETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAVS 91 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~ 91 (217)
+...++.|+.+-+..++++ .|..++. .-.+.+..+... +.......+.+.+.+.|..++.. .-.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 4445566777655555432 3433322 122223222222 22222333444455666555432 1223445556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVE 168 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 168 (217)
..|..+.+..++.. .+..++. .-.+ .+...++.|+.+- .+.+.+.|..++..+ . +...++.|+.+
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~T-pL~~A~~~g~~~i----v~~Ll~~GAd~n~~~--~-L~~A~~~~~~~- 315 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKT-ALLLAVELKLKKI----AELLCKRGASTDCGD--L-VMTARRNYDHS- 315 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCB-HHHHHHHTTCHHH----HHHHHTTSCSSTTCC--H-HHHHHHTTCHH-
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCC-HHHHHHHcCCHHH----HHHHHHCCCCCCCCC--H-HHHHHHcCCHH-
Confidence 67777655544331 2222222 2222 2334456676654 344456677666543 2 33334556553
Q ss_pred HHHHHHHHHHcCCCCCh
Q 035645 169 AANYLMEMTEMGLTPIS 185 (217)
Q Consensus 169 a~~~~~~~~~~~~~~~~ 185 (217)
+.+.+++.|-.||.
T Consensus 316 ---iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 ---LVKVLLSHGAKEDF 329 (337)
T ss_dssp ---HHHHHHHTTCCC--
T ss_pred ---HHHHHHHCcCCCCC
Confidence 34455666766653
No 334
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=56.49 E-value=40 Score=22.28 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=41.2
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhc
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAFRR 128 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~ 128 (217)
+...++.|+.+....+++.-...-..++..-. ..+...+..|+.+-+ +.+.+.|..++. ..++ .+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHHHc
Confidence 55667788888887777653321111222222 344455666776544 444455544433 2222 34445566
Q ss_pred CChHHHHHHH
Q 035645 129 GQFDDAFCFF 138 (217)
Q Consensus 129 g~~~~a~~~~ 138 (217)
|+.+-+..++
T Consensus 84 ~~~~~v~~Ll 93 (231)
T 3aji_A 84 GXDEIVKALL 93 (231)
T ss_dssp TCHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7765444333
No 335
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=54.66 E-value=1e+02 Score=26.41 Aligned_cols=153 Identities=16% Similarity=0.066 Sum_probs=89.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhcCchhHHHHHHHHHHhcCCCcchhhHH--HHHHHHHhcCC
Q 035645 20 LLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIE--TICKSGEVEFCVEMYYSVCKLGSCADVSTYK--ILIPAVSKAGM 95 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~ 95 (217)
+.-.|+-+....++..+.+.. +..+...+.- ++...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 334566666666776665431 2333333333 344678888888888888753 223332222 34445677888
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCH-HHHHHHHH
Q 035645 96 IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRF-VEAANYLM 174 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~ 174 (217)
.....++++.+.+.. ..+..-...+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 877777999888653 2233333333334445677777788877666553 45554444444455555544 56777887
Q ss_pred HHHH
Q 035645 175 EMTE 178 (217)
Q Consensus 175 ~~~~ 178 (217)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7764
No 336
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=54.59 E-value=42 Score=21.96 Aligned_cols=150 Identities=13% Similarity=0.004 Sum_probs=90.5
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 43 PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
++...-...+..+.+.+..+ +...+..+... ++..+-...+.++.+.+..+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 46666667777777777643 44444444432 56666777777888877654 3344444433 35666777788
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCch
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (217)
.++.+.+..+.. ..+..+.. .++..+-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+..+
T Consensus 103 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~ 174 (211)
T 3ltm_A 103 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGER 174 (211)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh
Confidence 888888876544 34444443 356666666777777766643 4444444443 466667777788888877644
Q ss_pred HHHHHH
Q 035645 203 LAEKIE 208 (217)
Q Consensus 203 ~a~~~~ 208 (217)
-...+.
T Consensus 175 ~~~~L~ 180 (211)
T 3ltm_A 175 VRAAME 180 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 337
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=54.14 E-value=25 Score=21.60 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=66.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHH
Q 035645 51 LIETICKSGEVEFCVEMYYSVCKLGS-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFP---SLYAPIIKGAF 126 (217)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~ 126 (217)
.+...++.|+.+.+..+++. ....+ ..+..-. +.+.. +..|+.+-+.. +.+.|..++. ...+ .+...+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~-t~L~~-~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t-~L~~A~ 76 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGK-TALQV-MMFGSTAIALE----LLKQGASPNVQDTSGTS-PVHDAA 76 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSC-CHHHH-SCTTCHHHHHH----HHHTTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCC-cHHHH-HHcCCHHHHHH----HHHCCCCCCCcCCCCCC-HHHHHH
Confidence 34455677888888777766 21111 1122222 33344 66677664444 4444544432 2222 344555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchH
Q 035645 127 RRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDL 203 (217)
Q Consensus 127 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (217)
..|+.+-+..++ +.|..++. .-.+.+ ...+..|+.+-+.-+++. .... ..|..-.+. +...+..|+.+-
T Consensus 77 ~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~-l~~A~~~~~~~~ 148 (156)
T 1bd8_A 77 RTGFLDTLKVLV----EHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTP-LELALQRGAQDL 148 (156)
T ss_dssp HTTCHHHHHHHH----HTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCH-HHHHHHSCCHHH
T ss_pred HcCcHHHHHHHH----HcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCH-HHHHHHcCcHHH
Confidence 667776544443 45544432 222333 333456666655544443 1111 112222223 333446677665
Q ss_pred HHHHH
Q 035645 204 AEKIE 208 (217)
Q Consensus 204 a~~~~ 208 (217)
+.-++
T Consensus 149 v~~Ll 153 (156)
T 1bd8_A 149 VDILQ 153 (156)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 338
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=54.05 E-value=37 Score=21.07 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=57.4
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH--HHHHHHHHh
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLY--APIIKGAFR 127 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~ 127 (217)
+...++.|+.+.+..+++.- +..++... ..+.+...+..|+.+ +++.+.+.|..++.... ...+...+.
T Consensus 12 l~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQ---SVNCRDIEGRQSTPLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTT---TTTCCCTTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHcC---CCCccccccCCCCHHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 34455667777666655431 22222211 124455556677764 44444555555443221 124455566
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHh---HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh
Q 035645 128 RGQFDDAFCFFSEIKIKGHPPNRP---VYTTLITMCGRGGRFVEAANYLMEMTEMGLTPIS 185 (217)
Q Consensus 128 ~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 185 (217)
.|+.+-+. .+.+.|..++.. -.+.+ ...+..|+.+-+ +.+.+.|..++.
T Consensus 85 ~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~ga~~~~ 136 (165)
T 3twr_A 85 YGHYEVAE----LLVKHGAVVNVADLWKFTPL-HEAAAKGKYEIC----KLLLQHGADPTK 136 (165)
T ss_dssp TTCHHHHH----HHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHH----HHHHHTTCCTTC
T ss_pred cCcHHHHH----HHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCcc
Confidence 77776444 444456555432 22333 344556665543 344455665543
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=52.57 E-value=51 Score=22.30 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=52.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCcch-------hhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCC-------
Q 035645 51 LIETICKSGEVEFCVEMYYSVCKLGSCADV-------STYKILIPAVSKA---GMIDEAFRLLHNLVEDGHNP------- 113 (217)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~------- 113 (217)
.+...++.|+.+.+..+++.+.+.|..++. .-.+ .+...+.. |+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 345567788998888888877777665443 2233 44444455 77776666666544332111
Q ss_pred ---CcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 035645 114 ---FPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 114 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 149 (217)
+..-.+ .+...+..|+.+-+..++ +.|..++
T Consensus 84 ~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~ 117 (256)
T 2etb_A 84 TDEFYQGHS-ALHIAIEKRSLQCVKLLV----ENGADVH 117 (256)
T ss_dssp CSTTTTTCC-HHHHHHHTTCHHHHHHHH----HTTCCTT
T ss_pred ccccccCCC-HHHHHHHcCCHHHHHHHH----HcCCCCC
Confidence 112222 345556677776555444 4455444
No 340
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.09 E-value=54 Score=22.42 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhcCCCCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 035645 131 FDDAFCFFSEIKIKGHPPN-RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR 186 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (217)
.+.+.++|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3577889999998877544 5677788888889999999999999998888788443
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=51.95 E-value=1.1e+02 Score=25.97 Aligned_cols=158 Identities=11% Similarity=-0.016 Sum_probs=87.2
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHhhCC----CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHH
Q 035645 14 DLLVQGLLNAGY---LESAKQMVNKMIKQG----SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKIL 86 (217)
Q Consensus 14 ~~ll~~~~~~g~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (217)
..++...|+.|. .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..++++.... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 456777788887 456778888776532 455543 23333334557666666666666653 234445678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChHHHHHHHHHHHh---cCCCCCHhHHHHHHHHHhc
Q 035645 87 IPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG-QFDDAFCFFSEIKI---KGHPPNRPVYTTLITMCGR 162 (217)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~ 162 (217)
+.+++...+.+...++++.....+...... ...++.+..... ..+.|.+.+.+--+ .........+..++...+.
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD-ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888899888888888776543222222 333444444332 23445555443211 1122334466777777665
Q ss_pred CCCHHHHHHHHHHHH
Q 035645 163 GGRFVEAANYLMEMT 177 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~ 177 (217)
.-.-++-.+-++...
T Consensus 844 ~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 844 RFSSEFELQQLEQFK 858 (909)
T ss_dssp TCCSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH
Confidence 544444444444444
No 342
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=51.90 E-value=16 Score=22.24 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=22.1
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 035645 51 LIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFR 101 (217)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (217)
.|...+.+++.+-|.++++...+.| +...|.+++-.|...=+++-+++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3444444455555555555444432 33444444444444444444433
No 343
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.27 E-value=63 Score=23.00 Aligned_cols=105 Identities=7% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHHhhCCCCCChhhH--HHHHHHHHhcCchhHHHHHHHHHHhcCCCcch---hhHHHHHHHHHhcCCHHHHHHHHHH
Q 035645 31 QMVNKMIKQGSDPDLETF--NSLIETICKSGEVEFCVEMYYSVCKLGSCADV---STYKILIPAVSKAGMIDEAFRLLHN 105 (217)
Q Consensus 31 ~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (217)
.+.+.+.+.|..++.... .+.+...+..|..+.+..+++. .|..++. .-.+ -+...++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~T-pL~~A~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKT-ALLLAVELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCB-HHHHHHHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCC-HHHHHHHcCCHH----HHHH
Confidence 344555677766653321 2334455667777665544332 2333322 2222 334445667764 4555
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 035645 106 LVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR 150 (217)
Q Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 150 (217)
+.+.|-.++..+ .+...++.|+.+ +.+.+.+.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 667787777665 445556677765 45556677877664
No 344
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=50.91 E-value=51 Score=21.81 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC----CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh---------
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQG----SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--------- 81 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------- 81 (217)
+.+...+..|+.+-+..+++.-.... ...+..-.+. +...+..|+.+- .+.+.+.|..++..
T Consensus 39 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~~~~~~~ 113 (232)
T 2rfa_A 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA-LHIAVINQNVNL----VRALLARGASVSARATGSVFHYR 113 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCCSGGGSCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH-HHHHHHcCCHHH----HHHHHhCCCCCCcccCCcceeec
Confidence 34556667788887777766532210 0111122233 334455666554 34444455544432
Q ss_pred ------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----
Q 035645 82 ------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPP----- 148 (217)
Q Consensus 82 ------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----- 148 (217)
.-.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+.+..+++.+.+.|..+
T Consensus 114 ~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~ 189 (232)
T 2rfa_A 114 PHNLIYYGEHPLSFAACVGSEEIV----RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189 (232)
T ss_dssp TTCSCCCCSSHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCG
T ss_pred ccccccCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhh
Confidence 123445555667776544 44445555444321 1235566778899998888888888877543
Q ss_pred ----CHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 035645 149 ----NRPVYTTLITMCGRGGRFVEAANYLMEM 176 (217)
Q Consensus 149 ----~~~~~~~li~~~~~~g~~~~a~~~~~~~ 176 (217)
|..-.+. +...++.|+.+-+..+++.-
T Consensus 190 ~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 190 ELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp GGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred hccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 2222333 33445567766665555543
No 345
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=50.31 E-value=71 Score=25.41 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 152 VYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 152 ~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
-..-++..|.+.|-.+.|.++++.+-
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33444444555555555555554443
No 346
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=49.89 E-value=55 Score=23.68 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 137 FFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
++..+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|.
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~ 254 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT 254 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc
Confidence 444455566766666677777777666667777777777766553
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.56 E-value=85 Score=23.98 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG 129 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 129 (217)
+..+.+.|..++.+|.+.|..|....-..+..+.-..|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34677777777777777776554443344444444444
No 348
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.18 E-value=95 Score=24.42 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH-------HHHHHHhcCChHHHHHHHHHHHhc
Q 035645 80 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAP-------IIKGAFRRGQFDDAFCFFSEIKIK 144 (217)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~g~~~~a~~~~~~~~~~ 144 (217)
...+|.++..|...+.++.|..+..+.. ++.+...-+. +-+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3568889999999999999999998774 1212122222 235566778899999888887654
No 349
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.85 E-value=75 Score=23.17 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCC
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG-MIDEAFRLLHNLVEDGH 111 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~ 111 (217)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.. ..+.+..++..+.+.++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 456788899999999999999888532221 1223333333333221 23455667777776654
No 350
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.41 E-value=62 Score=22.07 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhcCCCcchh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 61 VEFCVEMYYSVCKLGSCADVS-------TYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
++.|+.+|+.+.+.-..++.. .--..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456888888886643222211 1224555688888898888888887664
No 351
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=47.91 E-value=60 Score=21.74 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCc-----hhHHHHHHHHHHhcCC
Q 035645 13 RDLLVQGLL---NAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE-----VEFCVEMYYSVCKLGS 76 (217)
Q Consensus 13 ~~~ll~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 76 (217)
+-.+|+++. +-.+.+.|+-.+.+|++.|..|.-..-..++.+.-.-|. ...|...++.....|.
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 334455554 458899999999999998876665555555555444443 3345555565555554
No 352
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=47.89 E-value=76 Score=22.91 Aligned_cols=176 Identities=13% Similarity=0.065 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHh
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSK 92 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (217)
+.+...+..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+ +.+.+.|..++...-...+...+.
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~ 93 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHH
Confidence 4455556778877665555 4455554322 12344455566766544 334444444444333345556667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCc--------------------ccHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFP--------------------SLYAPIIKGAFRRG--QFDDAFCFFSEIKIKGHPPNR 150 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~ 150 (217)
.|+.+-+..+++.....+..++. .-.+ .+...+..| +.+-+..++ +.|..++.
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~Ll----~~ga~~~~ 168 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKILV----QLGASPTA 168 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHHHH----HHTCCTTC
T ss_pred cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHHHH----HcCCCCcc
Confidence 78888777777765555554433 1122 344455666 555444444 34554443
Q ss_pred ---hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-----CC---hhhHHHHHHHHHhcCCchHHHHHHH
Q 035645 151 ---PVYTTLITMCGRGGRFVEAANYLMEMTEMGLT-----PI---SRCFDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 151 ---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
.-.+.| ...+..|+.+-+..++ +.|.. ++ ..-.+.|. ..+..|+.+-+.-+++
T Consensus 169 ~d~~g~t~L-~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~ 232 (364)
T 3ljn_A 169 KDKADETPL-MRAMEFRNREALDLMM----DTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVE 232 (364)
T ss_dssp CCTTSCCHH-HHHHHTTCHHHHHHHH----HHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHT
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHH----hcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHH
Confidence 223333 3344567665444443 33332 32 33344444 4456677665555543
No 353
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=47.71 E-value=43 Score=20.04 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSEIKI-KGHPPNRPVYTTLITMCGRGGRFVEAANYL 173 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 173 (217)
.+++|..-+++..+. ++|......++..+... ++.++++.+...+ .|+ .+.++...+....+.|-++.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 466777777777554 34444444454443322 4445555544433 465 355667777777777766554 455
Q ss_pred HHHH
Q 035645 174 MEMT 177 (217)
Q Consensus 174 ~~~~ 177 (217)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 354
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=47.50 E-value=35 Score=19.59 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 166 FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
.+.+.+++....... ....|...|+.++.+.|.-+-|.++...+
T Consensus 54 ~eq~~~mL~~W~~~~--g~~At~~~L~~AL~~~~~~~iae~i~~~~ 97 (99)
T 1fad_A 54 SERVRESLKVWKNAE--KKNASVAGLVKALRTCRLNLVADLVEEAQ 97 (99)
T ss_dssp HHHHHHHHHHHHHHH--GGGGSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 355666665555432 23447888888888888888888876654
No 355
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.28 E-value=84 Score=23.28 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 035645 48 FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM--IDEAFRLLHNLVEDGHNPFPSLYAPIIKGA 125 (217)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (217)
...++.-|...++.++|.+.++++....+ ....+...+..++-+.++ .+....++..+.+.++-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 45677777788888888888887753221 123445555555554433 345677777777776554444333333333
Q ss_pred H
Q 035645 126 F 126 (217)
Q Consensus 126 ~ 126 (217)
.
T Consensus 299 ~ 299 (358)
T 3eiq_C 299 N 299 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 356
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=47.20 E-value=58 Score=21.34 Aligned_cols=174 Identities=10% Similarity=0.058 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHhcCchhHHHHHHHHHHhcCC-Cc---chhhHHHHH
Q 035645 14 DLLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETF--NSLIETICKSGEVEFCVEMYYSVCKLGS-CA---DVSTYKILI 87 (217)
Q Consensus 14 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~ll 87 (217)
.+.+...+..|+.+.+..++ +.|..++.... ...+...+..|+.+-+..++ +.+. .+ +..-. ..+
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~g~-t~L 96 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQILI----RNRATDLDARMHDGT-TPL 96 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH----HBTTSCTTCCCTTCC-CHH
T ss_pred CchHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCC-cHH
Confidence 34556667788876655554 44555443211 13344455667665444443 3322 11 22222 334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHh---HHHHHHHHHhc
Q 035645 88 PAVSKAGMIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRP---VYTTLITMCGR 162 (217)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 162 (217)
...+..++.+- ++.+.+.+..++... -...+...+..|+.+.+..++ +.|..++.. -.+.+ ...+.
T Consensus 97 ~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L-~~A~~ 167 (223)
T 2f8y_A 97 ILAARLAVEGM----LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL----KNGANKDMQNNREETPL-FLAAR 167 (223)
T ss_dssp HHHHHHTCHHH----HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHH-HHHHH
T ss_pred HHHHHhCcHHH----HHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCcCHH-HHHHH
Confidence 44456666654 344444554443321 123445556677766555444 445444321 12222 33345
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCchHHHHHHH
Q 035645 163 GGRFVEAANYLMEMTEMGLTPISRC--FDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
.|+.+-+ +.+.+.|..++... -..-+....+.|+.+-+.-+++
T Consensus 168 ~~~~~~v----~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 168 EGSYETA----KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHH----HHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 5665443 34455555554321 1123344455666665554443
No 357
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=46.58 E-value=1.6e+02 Score=26.38 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 035645 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFFSE 140 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 140 (217)
.+...+.|.++.+---.-|.......+.--...+++..|.+++.++.+.. |+...|..++..+...| |+......+.
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 34445555555543111122222222222235677777777777777653 55666666666665555 4444444444
Q ss_pred H
Q 035645 141 I 141 (217)
Q Consensus 141 ~ 141 (217)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 3
No 358
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.43 E-value=80 Score=22.78 Aligned_cols=182 Identities=12% Similarity=-0.000 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh-------------
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS------------- 81 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------- 81 (217)
+.+...+..|+.+-+..+++ .|..++...-...+...+..|+.+-+..+++.....|..++..
T Consensus 55 t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (364)
T 3ljn_A 55 TALHLACKFGCVDTAKYLAS----VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIG 130 (364)
T ss_dssp CHHHHHHHHCCHHHHHHHHH----HCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEET
T ss_pred cHHHHHHHcCCHHHHHHHHH----CCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhc
Confidence 44556667788766555544 3444443222334455567788887777777666556555441
Q ss_pred ------hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCC-
Q 035645 82 ------TYKILIPAVSKAG--MIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFFSEIKI-KGHPPN- 149 (217)
Q Consensus 82 ------~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~- 149 (217)
.-.+.+...+..| +.+-+..++ +.|..++... -...+...+..|+.+-+..+++.-.. .+..++
T Consensus 131 ~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~ 206 (364)
T 3ljn_A 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILV----QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206 (364)
T ss_dssp TEEEEESCCCHHHHHHHSCGGGHHHHHHHH----HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred cccCCCCCCCHHHHHHHcCCchHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Confidence 0123444555666 554443333 3344443321 12344555677877665555543221 111132
Q ss_pred --HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCchHHHHHHHH
Q 035645 150 --RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISR---CFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 150 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
..-.+.|. ..+..|+.+-+ +.+.+.|..++.. -.+.| ...+..|+.+-+.-+++.
T Consensus 207 ~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 207 ANKQGNSHLH-WAILINWEDVA----MRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTCCCTTH-HHHTTTCHHHH----HHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCcHHH-HHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 33344444 44566776543 4445566555432 22233 333455776666666554
No 359
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=45.93 E-value=1.1e+02 Score=24.32 Aligned_cols=72 Identities=7% Similarity=-0.032 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHH
Q 035645 61 VEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDA 134 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 134 (217)
.+........+..+-..-+..--.-++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|+|+|+++.+
T Consensus 497 ~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 497 RSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred hhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3444444555544322224455667778888888888888888877655322 23344 566777888877664
No 360
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=45.90 E-value=1.6e+02 Score=26.45 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 131 FDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
.+...+.|.++.+.--.-|....-..+.-..+.+++-.|.+++.++.+.. |+...|..++..+...| |+....+.+.
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 34455666666554111122222222222335677777777777777543 56667777766665544 3444444433
Q ss_pred H
Q 035645 211 E 211 (217)
Q Consensus 211 ~ 211 (217)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 3
No 361
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=45.53 E-value=24 Score=16.41 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 188 FDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
....|.+-+..|+++.+..+-..+..
T Consensus 13 iEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 33445555555666665555544443
No 362
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=45.38 E-value=40 Score=24.52 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHhhCC-----CCCChh---hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 25 YLESAKQMVNKMIKQG-----SDPDLE---TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~-----~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
.-+.|...|..+...- ..++.. .+...+..+.+..+. ++++.+.+.|+.|...++.=++..+.+.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 4567777777765431 122222 222233333332222 3566677778888888877777778877778
Q ss_pred HHHHHHHHHHHhCC
Q 035645 97 DEAFRLLHNLVEDG 110 (217)
Q Consensus 97 ~~a~~~~~~~~~~~ 110 (217)
+.+.++|+.+...|
T Consensus 245 ~~~lriWD~~l~eg 258 (334)
T 2qq8_A 245 DLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888887765
No 363
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=44.67 E-value=22 Score=15.81 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhh
Q 035645 190 LVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.-++.|...|..++|+.+-+.++.
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 346778888888888888776653
No 364
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=44.51 E-value=69 Score=21.50 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=37.0
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCc-----hhHHHHHHHHHHhcCCC
Q 035645 12 GRDLLVQGLLN---AGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGE-----VEFCVEMYYSVCKLGSC 77 (217)
Q Consensus 12 ~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 77 (217)
.+-.+|+++.+ -.+.+.|+-.+.+|++.| .|.-..-..++.+.-.-|. ...|...++.....|.+
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34445555543 577888888888888887 5444444444444444343 23455555555555553
No 365
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.16 E-value=74 Score=21.72 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCCCCChh--hH-----HHHHHHHHhcCchhHHHHHHHHHHhc
Q 035645 26 LESAKQMVNKMIKQGSDPDLE--TF-----NSLIETICKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~--~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~ 74 (217)
++.|+.+|+.+.+.-..++.. .. -..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567888888887653222211 11 13455688999999999999999764
No 366
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.23 E-value=65 Score=20.81 Aligned_cols=121 Identities=12% Similarity=-0.044 Sum_probs=52.9
Q ss_pred ChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 035645 44 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIK 123 (217)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (217)
+...-...+.++...+..+ +...+..+.. .++..+-...+.++.+.+..+ +...+..+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444455444432 2222223322 245555555556666655543 2233333332 234444455556
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 035645 124 GAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 124 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 177 (217)
++.+.+..+. ...+..+.. .++..+-...+.++.+.|.. ++...+..+.
T Consensus 130 aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 130 ALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHHHTCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred HHHHhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 6666555332 233333332 23444555555555555542 3344444443
No 367
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.75 E-value=1.3e+02 Score=24.21 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHH----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYA----PIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAA 170 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 170 (217)
+.+.|...+....+.. ..+..... .+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6678888887776433 22322222 22223333442445555555544332 33333444444555779999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 171 NYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
+.|..|..... ....-.-.+..++...|+.++|..+++.+.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988765321 2344456778888889999999999887764
No 368
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.33 E-value=55 Score=19.76 Aligned_cols=41 Identities=5% Similarity=-0.111 Sum_probs=18.9
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 035645 33 VNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCK 73 (217)
Q Consensus 33 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 73 (217)
|+.+.+..+.|+...--.-+..+...++++.|..++..+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444433333222333334455666666666655543
No 369
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=42.04 E-value=38 Score=21.84 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035645 82 TYKILIPAVSKAGMIDEAFRLLHNLV 107 (217)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (217)
....++.-|...++.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34567888888999999999999876
No 370
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.60 E-value=78 Score=21.26 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=8.2
Q ss_pred CchhHHHHHHHHHHhcC
Q 035645 59 GEVEFCVEMYYSVCKLG 75 (217)
Q Consensus 59 ~~~~~a~~~~~~~~~~~ 75 (217)
.+.+.|+-.+-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 371
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.60 E-value=77 Score=21.22 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=10.0
Q ss_pred CchhHHHHHHHHHHhcCCCc
Q 035645 59 GEVEFCVEMYYSVCKLGSCA 78 (217)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~ 78 (217)
.+.+.|+-.+-+|++.|-.|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555544433
No 372
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=41.34 E-value=39 Score=18.70 Aligned_cols=32 Identities=3% Similarity=-0.009 Sum_probs=18.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 035645 5 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 36 (217)
Q Consensus 5 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 36 (217)
+++|++.||+-+...+-+..-...+..+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56777777777666655544444444444443
No 373
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=41.29 E-value=52 Score=22.91 Aligned_cols=173 Identities=17% Similarity=0.154 Sum_probs=71.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHH
Q 035645 16 LVQGLLNAGYLESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVS 91 (217)
Q Consensus 16 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 91 (217)
.+...+..|+.+.+..+ .+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... ..+.+...+
T Consensus 62 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~ 133 (285)
T 3d9h_A 62 PMHEAAIHGHQLSLRNL----ISQGWAVNIITADHVSPLHEACLGGHLSCV----KILLKHGAQVNGVTADWHTPLFNAC 133 (285)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTCCSCEECTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 34445556665444433 33444443221 11233333445554433 33333444433211 112333344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCccc-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhcCCCHH
Q 035645 92 KAGMIDEAFRLLHNLVEDGHNPFPSL-YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITMCGRGGRFV 167 (217)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~ 167 (217)
..|+.+-+ +.+.+.+..++... -...+...+..|+.+-+..++ +.|..++. .-.+. +...+..|+.+
T Consensus 134 ~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~-L~~A~~~~~~~ 204 (285)
T 3d9h_A 134 VSGSWDCV----NLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI----AYGGNIDHKISHLGTP-LYLACENQQRA 204 (285)
T ss_dssp HHTCHHHH----HHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHH----HTTCCTTCCBTTTBCH-HHHHHHTTCHH
T ss_pred HcCHHHHH----HHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCH-HHHHHHcCcHH
Confidence 55555433 33334443332111 122344455566665444333 44443332 11222 33334556654
Q ss_pred HHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCchHHHHHHH
Q 035645 168 EAANYLMEMTEMGLTPISRC-FDLVTDGLKNCGKHDLAEKIEQ 209 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 209 (217)
-+ +.+.+.|..++... -...+...+..|+.+-+.-+++
T Consensus 205 ~v----~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 205 CV----KKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp HH----HHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HH----HHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 33 33345555443211 1133444456677766555554
No 374
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.55 E-value=1e+02 Score=22.26 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=28.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGM--IDEAFRLLHNLVEDGH 111 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 111 (217)
.++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+.+.|+
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 4555555566666666666666421111 22333344444443322 2344555555555543
No 375
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.10 E-value=79 Score=20.90 Aligned_cols=179 Identities=11% Similarity=-0.042 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcC-CCcch--hhHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLG-SCADV--STYKILIPA 89 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~ 89 (217)
+.+...+..|+.+-+..+ .+.|..++... -...+...+..|+.+- .+.+.+.| ..++. ..-...+..
T Consensus 46 t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~~g~t~L~~ 117 (237)
T 3b7b_A 46 TPLMEAAENNHLEAVKYL----IKAGALVDPKDAEGSTCLHLAAKKGHYEV----VQYLLSNGQMDVNCQDDGGWTPMIW 117 (237)
T ss_dssp CHHHHHHHTTCHHHHHHH----HTTTCCCCCCCTTSCCHHHHHHHTTCHHH----HHHHHTTTCCCTTCCCTTSCCHHHH
T ss_pred CHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCcHHHHHHHcCCHHH----HHHHHhCCCCCcccCCCCCCCHHHH
Confidence 345556677887655444 45555443221 1123444455666554 34444443 22221 111233445
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhH--HHHHHHHHhcCCC
Q 035645 90 VSKAGMIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPV--YTTLITMCGRGGR 165 (217)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 165 (217)
.+..|+.+- ++.+.+.|..++... -...+...+..|+.+- ++.+.+.|..++... -.+.+...++.|+
T Consensus 118 A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 189 (237)
T 3b7b_A 118 ATEYKHVDL----VKLLLSKGSDINIRDNEENICLHWAAFSGCVDI----AEILLAAKCDLHAVNIHGDSPLHIAARENR 189 (237)
T ss_dssp HHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH----HHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHcCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence 556677654 444445554443321 1123455556677654 444445555544221 1123344456676
Q ss_pred HHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 035645 166 FVEAANYLMEMTEMGLTPISR--CFDLVTDGLKNCGKHDLAEKIEQLEVS 213 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (217)
.+-+ +.+.+.|..++.. .-..-+......|+.+.+.++.+.+.+
T Consensus 190 ~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 190 YDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6544 3445556555432 112344555677888888887776654
No 376
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=39.78 E-value=93 Score=21.60 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh-HHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLE---TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST-YKILIPAV 90 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~ 90 (217)
+.+...+..|+.+-+..+ .+.|..++.. -.+. +...+..|+.+- .+.+.+.|..++... ....+...
T Consensus 94 t~L~~A~~~g~~~~v~~L----l~~ga~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A 164 (285)
T 3d9h_A 94 SPLHEACLGGHLSCVKIL----LKHGAQVNGVTADWHTP-LFNACVSGSWDC----VNLLLQHGASVQPESDLASPIHEA 164 (285)
T ss_dssp CHHHHHHHTTCHHHHHHH----HHTTCCSSCCCTTCCCH-HHHHHHHTCHHH----HHHHHHTTCCSSCSCTTSCHHHHH
T ss_pred CHHHHHHHCCcHHHHHHH----HHCCCCCCCCCCCCCCH-HHHHHHcCHHHH----HHHHHHCCCCCCCCCCCCCHHHHH
Confidence 344455667776655444 4455555432 2233 334445566554 344444444433211 23445556
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--hHHHHHHHHHhcCCCH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNR--PVYTTLITMCGRGGRF 166 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 166 (217)
+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..++ +.|..++. .-. +.+...+..|+.
T Consensus 165 ~~~g~~~~v----~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~g~-t~L~~A~~~~~~ 235 (285)
T 3d9h_A 165 ARRGHVECV----NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL----ESGADVNQGKGQD-SPLHAVVRTASE 235 (285)
T ss_dssp HHHTCHHHH----HHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTB-CHHHHHHHTTCH
T ss_pred HHcCCHHHH----HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH----HCCCCCCCCCCCC-CHHHHHHHcCCH
Confidence 667776544 44444544443221 113445556777776554444 44555442 222 233444566666
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 035645 167 VEAANYLMEMTEMGLTPI 184 (217)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~ 184 (217)
+-+ +.+.+.|..++
T Consensus 236 ~~v----~~Ll~~gad~~ 249 (285)
T 3d9h_A 236 ELA----CLLMDFGADTQ 249 (285)
T ss_dssp HHH----HHHHHTTCCTT
T ss_pred HHH----HHHHHCCCCCC
Confidence 443 44445565554
No 377
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.57 E-value=54 Score=18.82 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 035645 131 FDDAFCFFSEIK 142 (217)
Q Consensus 131 ~~~a~~~~~~~~ 142 (217)
.+.|.+++..+.
T Consensus 53 ~~~ar~Lld~L~ 64 (97)
T 3ygs_P 53 RDQARQLIIDLE 64 (97)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 378
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.46 E-value=1.2e+02 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMV 33 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~ 33 (217)
+.+...+..|+.+.+..++
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll 34 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL 34 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH
Confidence 3445555667766554444
No 379
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=39.33 E-value=1.8e+02 Score=24.75 Aligned_cols=143 Identities=8% Similarity=-0.039 Sum_probs=78.3
Q ss_pred HHHHHHHhcCc---hhHHHHHHHHHHhc----CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 50 SLIETICKSGE---VEFCVEMYYSVCKL----GSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 50 ~ll~~~~~~~~---~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
.++...|..|. .+.|.+.|+..... .++||.. ..+...-.+.|..++-..++++..... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 45666677665 45677788776543 2455543 233333445677666666777776653 333446788
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC-CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhc
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKG-HPPNRPVYTTLITMCGRGGRFVEAANYLMEMTE---MGLTPISRCFDLVTDGLKNC 198 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ 198 (217)
.+++...+.+...+++....... +++ ......+.......-..+.|++.+.+=-+ .........+..++......
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRK-QDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 88888888888888887766433 332 22333332222222234555555543211 11223334566666665543
No 380
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.31 E-value=41 Score=17.38 Aligned_cols=6 Identities=33% Similarity=-0.042 Sum_probs=2.1
Q ss_pred HHHHHH
Q 035645 166 FVEAAN 171 (217)
Q Consensus 166 ~~~a~~ 171 (217)
.+.|+.
T Consensus 39 vd~aI~ 44 (59)
T 1wgl_A 39 KDAAIN 44 (59)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 381
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=39.12 E-value=89 Score=21.24 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=47.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHHHh
Q 035645 17 VQGLLNAGYLESAKQMVNKMIKQGSDPDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAVSK 92 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~ 92 (217)
+...+..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+. .+.+.|..++.. ...+.+...+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVK----ILLKHGAQVNGVTADWHTPLFNACV 78 (261)
T ss_dssp HHHHHHHTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 445556677665555443 444443221 112333344556654433 333444444321 11233344445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCccc-HHHHHHHHHhcCChHHHHHHH
Q 035645 93 AGMIDEAFRLLHNLVEDGHNPFPSL-YAPIIKGAFRRGQFDDAFCFF 138 (217)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~ 138 (217)
.|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..++
T Consensus 79 ~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 121 (261)
T 2xai_A 79 SGSWDCV----NLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 121 (261)
T ss_dssp HTCHHHH----HHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHH----HHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 5665533 33344443332211 122344555666665443333
No 382
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=38.76 E-value=90 Score=21.15 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=9.2
Q ss_pred CchhHHHHHHHHHHhcCCCc
Q 035645 59 GEVEFCVEMYYSVCKLGSCA 78 (217)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~ 78 (217)
.+.+.|+-.+-+|.+.|-.|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 34444444444444444333
No 383
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=38.74 E-value=18 Score=18.01 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCCh
Q 035645 24 GYLESAKQMVNKMIKQGSDPDL 45 (217)
Q Consensus 24 g~~~~a~~~~~~m~~~~~~~~~ 45 (217)
.++.+|.++++.+.+.|-.|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 3567788888888777765544
No 384
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=37.11 E-value=1.1e+02 Score=21.79 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 137 FFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
++..+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|.
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 344445567777777777777777776667777777777776653
No 385
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.81 E-value=84 Score=20.25 Aligned_cols=150 Identities=12% Similarity=-0.010 Sum_probs=85.3
Q ss_pred CChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 035645 43 PDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPII 122 (217)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (217)
++...-...+.++.+.+..+.. ..+..+.. .++..+-...+.++.+.+..+. ...+..+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 4555555556666666653333 33333333 2456666666777777776543 344444443 35666777788
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCch
Q 035645 123 KGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHD 202 (217)
Q Consensus 123 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (217)
.++.+.+..+....+.. +.. .++..+-...+.++.+.+..+ +...+..+.+ .++..+-...+.++.+.|..+
T Consensus 98 ~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh
Confidence 88888887654444433 432 356666666677777666543 4444444443 356666677777777777644
Q ss_pred HHHHHH
Q 035645 203 LAEKIE 208 (217)
Q Consensus 203 ~a~~~~ 208 (217)
-...+.
T Consensus 170 ~~~~L~ 175 (201)
T 3ltj_A 170 VRAAME 175 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 386
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.68 E-value=62 Score=19.75 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 035645 117 LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAAN 171 (217)
Q Consensus 117 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 171 (217)
.|--.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=+++-+.+
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34445555566666666666666666554 44556666666655555555544
No 387
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.45 E-value=64 Score=24.85 Aligned_cols=61 Identities=15% Similarity=-0.014 Sum_probs=41.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------HhHHHH-HHHHHhcCCCHHHHHHHHHHHH
Q 035645 117 LYAPIIKGAFRRGQFDDAFCFFSEIKIKGHPPN--------RPVYTT-LITMCGRGGRFVEAANYLMEMT 177 (217)
Q Consensus 117 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~-li~~~~~~g~~~~a~~~~~~~~ 177 (217)
..+.+++.|.+.|+.+.+..+++.+...+..|+ ..+|.- +...+...+++.+|.+.+....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 367788999999999999999999887765332 234432 2344456677777666554443
No 388
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=36.12 E-value=94 Score=22.57 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 035645 137 FFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMG 180 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 180 (217)
++..+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 33445556777777777777777777667777777777776655
No 389
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=36.12 E-value=39 Score=22.24 Aligned_cols=142 Identities=15% Similarity=-0.001 Sum_probs=64.5
Q ss_pred HHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC----CcccHHHHHHHH
Q 035645 52 IETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG--HNP----FPSLYAPIIKGA 125 (217)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~ll~~~ 125 (217)
+...++.|+.+.+..+++.-.......+..-. +.+...+..|+.+-+ +.+.+.+ ..+ +....+ .+...
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~g~t-~L~~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEIT----SFLLSKMENVNLDDYPDDSGWT-PFHIA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTCTTCCGGGCCCTTSCC-HHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCC-CHHHHHHHcCCHHHH----HHHHhccccccccccCCCCCCC-HHHHH
Confidence 44556678777766666543221111222222 344455667776544 4444444 221 122223 34445
Q ss_pred HhcCChHHHHHHHHHHHhcC--CCCC---HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhc
Q 035645 126 FRRGQFDDAFCFFSEIKIKG--HPPN---RPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRC--FDLVTDGLKNC 198 (217)
Q Consensus 126 ~~~g~~~~a~~~~~~~~~~~--~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 198 (217)
+..|+.+.+.. +.+.| ..++ ..-.+.+ ...+..|+.+-+. .+.+.|..++... -...+...+..
T Consensus 80 ~~~~~~~~~~~----Ll~~g~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~ 150 (228)
T 2dzn_A 80 CSVGNLEVVKS----LYDRPLKPDLNKITNQGVTCL-HLAVGKKWFEVSQ----FLIENGASVRIKDKFNQIPLHRAASV 150 (228)
T ss_dssp HHHCCHHHHHH----HHSSSSCCCTTCCCTTCCCHH-HHHHHTTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHHHHT
T ss_pred HHcCCHHHHHH----HHhCCCCcccccCCcCCCCHH-HHHHHcCCHhHHH----HHHHcCCCccccCCCCCCHHHHHHHc
Confidence 56677654444 44444 2221 1222333 3334566665444 4445555553321 11233344456
Q ss_pred CCchHHHHHH
Q 035645 199 GKHDLAEKIE 208 (217)
Q Consensus 199 ~~~~~a~~~~ 208 (217)
|+.+-+.-++
T Consensus 151 ~~~~~v~~Ll 160 (228)
T 2dzn_A 151 GSLKLIELLC 160 (228)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6665555444
No 390
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=35.99 E-value=80 Score=19.78 Aligned_cols=80 Identities=6% Similarity=-0.055 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHh-cCCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCCCChhhHHHH--HHHHHh-cCCch
Q 035645 131 FDDAFCFFSEIKI-KGHPP---NRPVYTTLITMCGRGGRFVEAANYLMEMT-EMGLTPISRCFDLV--TDGLKN-CGKHD 202 (217)
Q Consensus 131 ~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l--~~~~~~-~~~~~ 202 (217)
++.++++.+...+ .|..| ++.++...+....+.|-++.. +.|..|. .++.. +.+|+.. -..|.. ...+.
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN~t--vH~Y~e~~a~~v~~~I~~~l~ 130 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRNIT--SHTYDQEKAMAVYAQIDDFLI 130 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHTTG--GGTTSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhhHh--cccccHhhHHHHHHHHHHHHH
Confidence 4455555554443 46654 367888888888899988766 5566665 45543 3344322 222222 12556
Q ss_pred HHHHHHHHHhh
Q 035645 203 LAEKIEQLEVS 213 (217)
Q Consensus 203 ~a~~~~~~~~~ 213 (217)
...++.+.+.+
T Consensus 131 ~f~~l~~~l~~ 141 (146)
T 1jog_A 131 ESSFLLEQLRQ 141 (146)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 66666665554
No 391
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.57 E-value=52 Score=17.47 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHH
Q 035645 49 NSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVS 91 (217)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (217)
+.+++.+++..-.+.++..+++..+.|. .+..+|-.-++.++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~La 47 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3344444444444444444444444432 23334443333333
No 392
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.91 E-value=1e+02 Score=20.70 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhcCCCcch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 035645 61 VEFCVEMYYSVCKLGSCADV----STYKILIPAVSKAGMIDEAFRLLHNLVED 109 (217)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (217)
++.|+.+|+.+.+.--.+-. ..--..+..|.+.|.+++|.+++++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 44678887777543211100 11223455677888888888888875543
No 393
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=34.77 E-value=56 Score=17.62 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 035645 96 IDEAFRLLHNLVEDGHNPFPSLYAPIIKGAF 126 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (217)
.++|...|.+|++..-.....+|...+..+.
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~ 44 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMII 44 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc
Confidence 3455555555443221222334444444433
No 394
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=34.69 E-value=42 Score=21.94 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=29.1
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 035645 149 NRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNC 198 (217)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (217)
....++.++..++...-+++++..+.+..+.| ..+..+|-.-++.+++.
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666665 35555555555555543
No 395
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=34.34 E-value=1.1e+02 Score=21.05 Aligned_cols=79 Identities=13% Similarity=-0.035 Sum_probs=34.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCh---hhHHHHHHH
Q 035645 122 IKGAFRRGQFDDAFCFFSEIKIKGHPPNR---PVYTTLITMCGRGGRFVEAANYLMEMTE-MGLTPIS---RCFDLVTDG 194 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~---~~~~~l~~~ 194 (217)
+...+..|+.+-+..+ .+.|..++. .-.+.|.. .+..|+.+-+. .+.+ .|..++. .-.+. +..
T Consensus 187 Lh~A~~~g~~~~v~~L----l~~gad~n~~d~~G~TpLh~-A~~~g~~~iv~----~Ll~~~gad~~~~d~~g~Tp-L~~ 256 (276)
T 4hbd_A 187 LMLAVSHGRVDVVKAL----LACEADVNVQDDDGSTALMC-ACEHGHKEIAG----LLLAVPSCDISLTDRDGSTA-LMV 256 (276)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHH-HHHHTCHHHHH----HHHTSTTCCTTCCCTTSCCH-HHH
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHH-HHHCCCHHHHH----HHHhcCCCCCcCcCCCCCCH-HHH
Confidence 3444556665544333 344544432 22233332 33445544333 3333 4444332 22222 333
Q ss_pred HHhcCCchHHHHHHHH
Q 035645 195 LKNCGKHDLAEKIEQL 210 (217)
Q Consensus 195 ~~~~~~~~~a~~~~~~ 210 (217)
.+..|+.+-+.-+++.
T Consensus 257 A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 257 ALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3455666666655543
No 396
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.25 E-value=1.1e+02 Score=23.59 Aligned_cols=62 Identities=5% Similarity=-0.060 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------hhhHH-HHHHHHHhcCchhHHHHHHHHHHh
Q 035645 12 GRDLLVQGLLNAGYLESAKQMVNKMIKQGSDPD--------LETFN-SLIETICKSGEVEFCVEMYYSVCK 73 (217)
Q Consensus 12 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--------~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 73 (217)
..|.+...|.+.|+.+.+..+++.+...+..|+ ..+|. .+...+...+++.+|.+.+....+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 467788999999999999999999987765333 23444 355566778999999998887755
No 397
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=34.18 E-value=1.5e+02 Score=22.31 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHhhCC----CCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHH
Q 035645 13 RDLLVQGLLNAGY---LESAKQMVNKMIKQG----SDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKI 85 (217)
Q Consensus 13 ~~~ll~~~~~~g~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (217)
-..++...|..|+ .+.|.+.|+.....+ ++||.... +...-.+ .-++-..+++..... .+..--..
T Consensus 200 R~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~ 272 (419)
T 3rjo_A 200 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQ 272 (419)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHH
Confidence 4456777788887 566778888876532 55554321 1111112 223333444444442 34555678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChHHHHHHHHH----HHhcCCCCCHhHHHHHHHHH
Q 035645 86 LIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRG-QFDDAFCFFSE----IKIKGHPPNRPVYTTLITMC 160 (217)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~ 160 (217)
++.+++...+.+...++++.....++....... .++.+.+... -.+.|.+.+.+ +.+. +.+....+..++...
T Consensus 273 ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~-~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~ 350 (419)
T 3rjo_A 273 IEFALCRTQNKEKLQWLLDESFKGDKIKTQEFP-QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGT 350 (419)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHH-HHHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHH
Confidence 888998899999888888888765531222323 3444444332 34445555443 3322 223445677777766
Q ss_pred hcC
Q 035645 161 GRG 163 (217)
Q Consensus 161 ~~~ 163 (217)
...
T Consensus 351 ~~~ 353 (419)
T 3rjo_A 351 TNQ 353 (419)
T ss_dssp TTT
T ss_pred hhc
Confidence 544
No 398
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=33.95 E-value=79 Score=23.04 Aligned_cols=83 Identities=5% Similarity=-0.025 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhC---CCCCChh---hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHH
Q 035645 26 LESAKQMVNKMIKQ---GSDPDLE---TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEA 99 (217)
Q Consensus 26 ~~~a~~~~~~m~~~---~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (217)
-+.|...|..+.+. ...++.. .....+..+.+.-+. ++++.+.+.|+.|...++.=++..+.+.=.++.+
T Consensus 188 E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~ 263 (345)
T 2qfz_A 188 EADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT 263 (345)
T ss_dssp HHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHH
T ss_pred HHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHH
Confidence 34566777776553 1222221 222233333333222 4566777788888888888888888888889999
Q ss_pred HHHHHHHHhCCCC
Q 035645 100 FRLLHNLVEDGHN 112 (217)
Q Consensus 100 ~~~~~~~~~~~~~ 112 (217)
.++|+.+...|..
T Consensus 264 lrlWD~~l~~g~~ 276 (345)
T 2qfz_A 264 IRLWDTYQSEPDG 276 (345)
T ss_dssp HHHHHHHTTSTTT
T ss_pred HHHHHHHHhCCCC
Confidence 9999999987643
No 399
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.42 E-value=1.7e+02 Score=22.78 Aligned_cols=140 Identities=17% Similarity=0.091 Sum_probs=88.2
Q ss_pred CchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 035645 59 GEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQFDDAFCFF 138 (217)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 138 (217)
.+.+.|.++- .+.|++--...|..-.+.+...|++++|.++--.-. .|+--+..|.+.+-.+-..-|+..-.+..|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 5566555553 344555555667777788888899998877765443 334445666665555555567777778888
Q ss_pred HHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 035645 139 SEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQLE 211 (217)
Q Consensus 139 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (217)
..+.+.| +.+..---.+++.-...|+.+...+++. +..+..+...=..+ +..+...|..++.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 8887776 3455545556666677777777666654 44556666533332 344667777777554
No 400
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.25 E-value=1.2e+02 Score=20.77 Aligned_cols=19 Identities=0% Similarity=-0.127 Sum_probs=9.5
Q ss_pred HhcCchhHHHHHHHHHHhc
Q 035645 56 CKSGEVEFCVEMYYSVCKL 74 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~ 74 (217)
++.|+.+.+..+++...+.
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~ 39 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRS 39 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHhhc
Confidence 3445555555555544433
No 401
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.23 E-value=53 Score=16.95 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHhhCC-CCCC
Q 035645 23 AGYLESAKQMVNKMIKQG-SDPD 44 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~~-~~~~ 44 (217)
.-+++.|...|.++...| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 347889999999887654 4444
No 402
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=32.89 E-value=1.4e+02 Score=21.56 Aligned_cols=135 Identities=8% Similarity=0.056 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHHHHhhC-C----CCCChhhHHH---HHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcC
Q 035645 23 AGYLESAKQMVNKMIKQ-G----SDPDLETFNS---LIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAG 94 (217)
Q Consensus 23 ~g~~~~a~~~~~~m~~~-~----~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (217)
.-+-+.|..++..+... + ..|+...... .+..+.+.-+ -+++..+.+.|+.|...++.=++..+.+.=
T Consensus 162 ~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~l 237 (331)
T 3qye_A 162 HMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQF 237 (331)
T ss_dssp TSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTS
T ss_pred HhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhC
Confidence 33567788888887653 2 2333322221 1222222222 256777778888888888888888888887
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHH----HHhcCChHHHHHHHHHHHhcCCCCCHhHHHHHHHHHhcCC
Q 035645 95 MIDEAFRLLHNLVEDGHNPFPSLYAPIIKG----AFRRGQFDDAFCFFSEIKIKGHPPNRPVYTTLITMCGRGG 164 (217)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 164 (217)
.++.+.++|+.+...|...-..+..+++.. ..+..+.++...++...... .+......+++-.....
T Consensus 238 p~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 238 PLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMD 308 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCC
Confidence 899999999998877643211222222322 22334677777777653321 23444555554443333
No 403
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=31.99 E-value=90 Score=22.71 Aligned_cols=74 Identities=3% Similarity=-0.232 Sum_probs=47.1
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hhhH--HHHHHHH----HhcCCchHHHHHHH
Q 035645 137 FFSEIKIKGHPPNRPVYTTLITMCGRGGRFVEAANYLMEMTEMGLTPI-SRCF--DLVTDGL----KNCGKHDLAEKIEQ 209 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~~----~~~~~~~~a~~~~~ 209 (217)
++..+.+.|+.|...++.-++..+++.=.++.+.++|+.+...|.... ...| .+++..+ ....++++..++++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 344455668888778888888888888889999999999987764432 1112 2222222 23456666665554
Q ss_pred H
Q 035645 210 L 210 (217)
Q Consensus 210 ~ 210 (217)
.
T Consensus 311 ~ 311 (345)
T 2qfz_A 311 N 311 (345)
T ss_dssp S
T ss_pred c
Confidence 3
No 404
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=31.93 E-value=1.3e+02 Score=21.14 Aligned_cols=113 Identities=8% Similarity=0.027 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLE--TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAV 90 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~ 90 (217)
..+...++.|+.+.+..++.. .+..++.. .-.+.+...+..|+.+-+ +.+.+.|..++.. .-.+.+...
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIV----QLLLQHGADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCccCCCCCcHHHHH
Confidence 345556678888888777653 23322211 112344455566776544 4444455544332 122344555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCChHHHHHHHH
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHNPFPS---LYAPIIKGAFRRGQFDDAFCFFS 139 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~ 139 (217)
+..|+.+- ++.+.+.|..++.. -+ ..+...+..|+.+-+..+++
T Consensus 99 ~~~g~~~i----v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 99 CSYGHYEV----TELLLKHGACVNAMDLWQF-TPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp HHTTCHHH----HHHHHHTTCCTTCCCTTCC-CHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCHHH----HHHHHHCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHH
Confidence 66777654 44444555444432 22 23445566777765555543
No 405
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=31.52 E-value=94 Score=19.24 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=11.5
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 035645 17 VQGLLNAGYLESAKQMVNK 35 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~ 35 (217)
+...+..|+++.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRK 24 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3445567777766666543
No 406
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=31.35 E-value=64 Score=19.88 Aligned_cols=42 Identities=5% Similarity=0.037 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 168 EAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
.+.++|..+.+.|. .+..-...|-..+.+.|+.+...++.+.
T Consensus 41 s~ldlF~~Lek~~~-L~~~nl~~L~eLL~~I~R~DLlkkI~~y 82 (130)
T 1n3k_A 41 TGSAWFSFLESHNK-LDKDNLSYIEHIFEISRRPDLLTMVVDY 82 (130)
T ss_dssp SHHHHHHHHHHTTT-CCSSCCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-CCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence 34455555554442 2222233344444444555555444433
No 407
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.10 E-value=1.2e+02 Score=20.48 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-----hHHHHHHHHHHHhcCCCCCH
Q 035645 83 YKILIPAVS---KAGMIDEAFRLLHNLVEDGHNPFPSLYAPIIKGAFRRGQ-----FDDAFCFFSEIKIKGHPPNR 150 (217)
Q Consensus 83 ~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 150 (217)
.--+++++. +..+.+.|+-++-+|++.|..|.-..-..++.+.-..|. ...|...+.....-|.+--.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 110 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 334445543 467899999999999999877765555555566555554 33455566666666765433
No 408
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=30.94 E-value=91 Score=18.89 Aligned_cols=24 Identities=13% Similarity=0.373 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 035645 187 CFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
|...|+.++.+.|.-+-|..+-..
T Consensus 65 Tv~~L~~AL~~i~~~diAe~Ie~~ 88 (122)
T 3ezq_B 65 TVAHLVGALRSCQMNLVADLVQEV 88 (122)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555555555555444433
No 409
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=29.99 E-value=1.4e+02 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=16.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 035645 7 NPPVRGRDLLVQGLLNAGYLESAKQMVN 34 (217)
Q Consensus 7 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 34 (217)
+.|..-.+.|+.++ ..|+.+.+..+++
T Consensus 6 kkd~~~~~~L~~A~-~~G~~~~v~~LL~ 32 (269)
T 4b93_B 6 KKDYREVEKLLRAV-ADGDLEMVRYLLE 32 (269)
T ss_dssp -CCCHHHHHHHHHH-HTTCHHHHHHHHT
T ss_pred ccCccchhHHHHHH-HcCCHHHHHHHHH
Confidence 44555566666654 6788776665543
No 410
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.96 E-value=82 Score=18.03 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHhhC
Q 035645 24 GYLESAKQMVNKMIKQ 39 (217)
Q Consensus 24 g~~~~a~~~~~~m~~~ 39 (217)
|++=+|.++++..-..
T Consensus 15 g~~~eaHEvlE~~W~~ 30 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLK 30 (94)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 5555666655555443
No 411
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.82 E-value=1.1e+02 Score=19.41 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 035645 62 EFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 111 (217)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 111 (217)
+.+..+++.+.+.|+--|...-...+....+.| .....+-.++...|+
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 334444444444444433333333444333322 122344444444444
No 412
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=29.54 E-value=78 Score=17.65 Aligned_cols=28 Identities=7% Similarity=0.232 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhC-CCCCCcccHHHHHHHH
Q 035645 97 DEAFRLLHNLVED-GHNPFPSLYAPIIKGA 125 (217)
Q Consensus 97 ~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 125 (217)
++|...|.+|+.. ++.| ..+|...+...
T Consensus 17 eea~~~Fk~LL~e~~V~p-~~tWe~~~~~i 45 (82)
T 2dod_A 17 EARMKQFKDMLLERGVSA-FSTWEKELHKI 45 (82)
T ss_dssp HHHHHHHHHHHHHTTCCS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCC-CCCHHHHHHHH
Confidence 4455555555432 3222 33444444433
No 413
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.89 E-value=1.1e+02 Score=20.06 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=35.8
Q ss_pred CCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHH
Q 035645 42 DPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDE 98 (217)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (217)
.|....++-++..++...-.+.++..+.+..+.|. .+..+|-.-++.+++..-+..
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~~r 163 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFLVR 163 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 44555567777777777777777777777776654 466666666666665544433
No 414
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=27.91 E-value=1e+02 Score=18.39 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHH
Q 035645 115 PSLYAPIIKGAFRRGQFDDAFCFFSEI 141 (217)
Q Consensus 115 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 141 (217)
+.++...++...+.|-.+.. +.|..|
T Consensus 53 ~~s~rd~~r~a~~~glI~~~-~~w~~m 78 (119)
T 1wty_A 53 ARSPRAAIRGAFQVGLLPED-PFWLEM 78 (119)
T ss_dssp CSSHHHHHHHHHHHTSSCCC-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCcH-HHHHHH
Confidence 45555556666665555443 344444
No 415
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.33 E-value=97 Score=18.05 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=12.7
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 035645 31 QMVNKMIKQGSDPDLETFNSLIETICKSG 59 (217)
Q Consensus 31 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 59 (217)
++.+++..-|+.|+..+..-++..|...+
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 33334444444444444444444444433
No 416
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=26.87 E-value=1e+02 Score=18.19 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 035645 13 RDLLVQGLLNAGYLESAKQMVN 34 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~ 34 (217)
-.+.+...++.|+.+.+..+++
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~ 35 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMA 35 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHhCCHHHHHHHHH
Confidence 3444555556666655544443
No 417
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=26.76 E-value=1.1e+02 Score=18.70 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 035645 17 VQGLLNAGYLESAKQMVNK 35 (217)
Q Consensus 17 l~~~~~~g~~~~a~~~~~~ 35 (217)
+...+..|+.+.+..+++.
T Consensus 7 L~~A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3444566776666665544
No 418
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=26.66 E-value=1.3e+02 Score=20.26 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.7
Q ss_pred hcCCchH
Q 035645 197 NCGKHDL 203 (217)
Q Consensus 197 ~~~~~~~ 203 (217)
+.|..+-
T Consensus 232 ~~g~~~i 238 (253)
T 1yyh_A 232 ERMHHDI 238 (253)
T ss_dssp HTTCHHH
T ss_pred HcCCHHH
Confidence 3344333
No 419
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.58 E-value=98 Score=17.82 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHH
Q 035645 151 PVYTTLITMCGRGGRFVEAANYLME 175 (217)
Q Consensus 151 ~~~~~li~~~~~~g~~~~a~~~~~~ 175 (217)
..+.-....+.+.|++++|++...+
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHH
Confidence 4455566777788888888877754
No 420
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=25.86 E-value=52 Score=20.91 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHH
Q 035645 131 FDDAFCFFSEIK 142 (217)
Q Consensus 131 ~~~a~~~~~~~~ 142 (217)
+++|.+++..|+
T Consensus 74 y~KA~ecL~~lR 85 (152)
T 1rw2_A 74 FMKSIDCIRAFR 85 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 421
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.15 E-value=1.6e+02 Score=19.82 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=12.1
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 035645 122 IKGAFRRGQFDDAFCFFSEIK 142 (217)
Q Consensus 122 l~~~~~~g~~~~a~~~~~~~~ 142 (217)
+..|.+.|.+++|.++++..-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHccchHHHHHHHHHHh
Confidence 344566666666666666543
No 422
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.07 E-value=72 Score=22.20 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=24.5
Q ss_pred HhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhc
Q 035645 56 CKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKA 93 (217)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (217)
...++-+.+.+.+++....|..|.......++.+....
T Consensus 47 l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~v 84 (258)
T 2i2x_B 47 IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVV 84 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34577788888888887777666555444555554443
No 423
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.41 E-value=1.6e+02 Score=19.11 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 035645 62 EFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHN 112 (217)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (217)
+.+..+++.+.+.|+--|...-...+....+.+.+. ...+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 445566777777777655555556666665554332 34566667777764
No 424
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=23.26 E-value=20 Score=18.24 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 035645 26 LESAKQMVNKMIKQGSDPDLETFNSLIETICKSG 59 (217)
Q Consensus 26 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 59 (217)
.++...+.++=+..|..+....+++..+.+...|
T Consensus 12 ~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 12 VYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp HHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 3444455555555555555555555555544433
No 425
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=23.19 E-value=1.1e+02 Score=17.35 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=32.1
Q ss_pred HhcCCCHHHH---HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHHHH
Q 035645 160 CGRGGRFVEA---ANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEQL 210 (217)
Q Consensus 160 ~~~~g~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (217)
+.-.+..+.+ .++|..+.+.+. .+..-...|...+.+-|+.+...++...
T Consensus 30 ~i~~~kle~i~s~~dlf~~Le~~~~-l~~~nl~~L~elL~~I~R~DLl~~v~~~ 82 (91)
T 1a1w_A 30 RVGKRKLERVQSGLDLFSMLLEQND-LEPGHTELLRELLASLRRHDLLRRVDDF 82 (91)
T ss_dssp HTCSHHHHHCSSSHHHHHHHHHTTS-CBTTBCHHHHHHHHHHTCSHHHHHHHHH
T ss_pred hccchhhhccCCHHHHHHHHHHcCC-CCcchHHHHHHHHHHCCHHHHHHHHHHh
Confidence 3344444444 788888887763 3444345666667777888888777665
No 426
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.09 E-value=1.2e+02 Score=17.76 Aligned_cols=41 Identities=7% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 035645 166 FVEAANYLMEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 208 (217)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (217)
.+.+.+++....... ....|...|+.++.+.|.-+-|.++.
T Consensus 58 ~eq~~~mL~~W~~~~--g~~AT~~~L~~aL~~i~r~diae~l~ 98 (111)
T 2yqf_A 58 LEQSVALLNLWVIRE--GQNANMENLYTALQSIDRGEIVNMLE 98 (111)
T ss_dssp HHHHHHHHHHHHHHH--TTSCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred HHHHHHHHHHHHHhh--CCCchHHHHHHHHHHcCcHHHHHHHH
Confidence 345555655554331 22346777888888877777776654
No 427
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.02 E-value=1.3e+02 Score=19.20 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=13.4
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHH
Q 035645 32 MVNKMIKQGSDPDLETFNSLIETIC 56 (217)
Q Consensus 32 ~~~~m~~~~~~~~~~~~~~ll~~~~ 56 (217)
.+++++++|-+-|...-|-||...+
T Consensus 21 ~L~~Lirs~~PeDL~~AN~LiK~m~ 45 (158)
T 1naf_A 21 MLARLLKSSHPEDLRAANKLIKEMV 45 (158)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHh
Confidence 4555666655545555555555444
No 428
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.81 E-value=86 Score=15.88 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 035645 96 IDEAFRLLHNL 106 (217)
Q Consensus 96 ~~~a~~~~~~~ 106 (217)
++.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 429
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=21.90 E-value=1.5e+02 Score=18.44 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=51.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchhh--HHHHHHHHHhcCC
Q 035645 18 QGLLNAGYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVST--YKILIPAVSKAGM 95 (217)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~ 95 (217)
...++.|+.+.+..+++.-...--.++..-++. +...+..|+.+- .+.+.+.|..++... -.+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP-LHWACREGRSAV----VEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCCCH-HHHHHHcCcHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 345567888777777654221101122222233 334455666543 444445555544321 1234445556666
Q ss_pred HHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHH
Q 035645 96 IDEAFRLLHNLVEDGHNPFPSL--YAPIIKGAFRRGQFDDAFCFF 138 (217)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~ 138 (217)
.+- ++.+.+.|..++... -...+...+..|+.+-+..++
T Consensus 85 ~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 85 RDI----VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125 (179)
T ss_dssp HHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHH----HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 553 344444554443321 112344555667665444333
No 430
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.82 E-value=94 Score=15.97 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=6.5
Q ss_pred ChHHHHHHHHHHHh
Q 035645 130 QFDDAFCFFSEIKI 143 (217)
Q Consensus 130 ~~~~a~~~~~~~~~ 143 (217)
..++|..+-+.+..
T Consensus 21 cH~EA~tIA~~L~~ 34 (61)
T 3ph0_C 21 CHQEAASIADWLAQ 34 (61)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34455444444443
No 431
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=21.67 E-value=2.2e+02 Score=20.22 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHH--------HHHHHHHhcCchhHHHHHHHHHHhcCCCcchhhHHHHHHHHHhcCCH
Q 035645 25 YLESAKQMVNKMIKQGSDPDLETFN--------SLIETICKSGEVEFCVEMYYSVCKLGSCADVSTYKILIPAVSKAGMI 96 (217)
Q Consensus 25 ~~~~a~~~~~~m~~~~~~~~~~~~~--------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (217)
+-+.|..++..+......++...-+ ..+..+.+.-+ -++++.+.+.|+.|...++.=++..+.+.=.+
T Consensus 130 ~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 205 (310)
T 3hzj_A 130 PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL----PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPL 205 (310)
T ss_dssp CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC----hHHHHHHHHcCCChHHHHHHHHHHHHhccCCH
Confidence 5678888888876542222221111 11222222222 24566677788888888888888888887789
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH---HhcCChHHHHHHHHH
Q 035645 97 DEAFRLLHNLVEDGHNPFPSLYAPIIKGA---FRRGQFDDAFCFFSE 140 (217)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~ 140 (217)
+.+.++|+.+...|...-..+..+++..+ .-..+.++....+..
T Consensus 206 ~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~ 252 (310)
T 3hzj_A 206 CMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRV 252 (310)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988776332111112222111 112478888888863
No 432
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=21.61 E-value=74 Score=22.46 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 035645 13 RDLLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 13 ~~~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
=|.+++.|...|+++.|.++++.+.
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 4678899999999999999999753
No 433
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.32 E-value=1.4e+02 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=12.1
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 035645 20 LLNAGYLESAKQMVNKMIK 38 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~ 38 (217)
.++.|+|++|.+.+++..+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4466777777776666543
No 434
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.31 E-value=1.1e+02 Score=20.14 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMI 37 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~ 37 (217)
.+|.++.+.|++++|.+++.++.
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666665553
No 435
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.12 E-value=1.2e+02 Score=16.79 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=18.3
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHh
Q 035645 50 SLIETICKSGEVEFCVEMYYSVCK 73 (217)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~ 73 (217)
.+.+-|+..|+++.|...|+...+
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 466678888888888888877654
No 436
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=20.91 E-value=1.8e+02 Score=18.93 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 035645 64 CVEMYYSVCKLGSCADVSTYKILIPAVSKA-GMIDEAFRLLHNLV 107 (217)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~ 107 (217)
..-+|..+.+..++.|...--.-+--++.. +++-+|.+.|-+|.
T Consensus 65 l~PL~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y~~And~Yl~La 109 (173)
T 1dvk_A 65 LFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLS 109 (173)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 344667777766666654433333345555 88999998888875
No 437
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.88 E-value=2.6e+02 Score=20.67 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcchh--hHHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNKMIKQGSDPDLE--TFNSLIETICKSGEVEFCVEMYYSVCKLGSCADVS--TYKILIPAV 90 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~ 90 (217)
+.+...+..|+.+-+..+++. |..++.. .-...+...+..|+.+-+ +.+.+.|..++.. .-...+...
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A 120 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAARIGHTNMV----KLLLENNANPNLATTAGHTPLHIA 120 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHHHTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHHCCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHH
Confidence 455566677877766555543 3333221 111233444555665433 3333344433321 112233444
Q ss_pred HhcCCHHHHHHHH
Q 035645 91 SKAGMIDEAFRLL 103 (217)
Q Consensus 91 ~~~~~~~~a~~~~ 103 (217)
++.|+.+-+..++
T Consensus 121 ~~~g~~~~v~~Ll 133 (437)
T 1n11_A 121 AREGHVETVLALL 133 (437)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 4556655444443
No 438
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=20.68 E-value=73 Score=24.84 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCchhHHHHHHHHHHhcCCCcch
Q 035645 24 GYLESAKQMVNKMIKQGSDPDLETFNSLIETICKSGEVEFCVEMYYSVCKLGSCADV 80 (217)
Q Consensus 24 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (217)
.++++|+...++.++.+.+.+. |-.-.|.++|.++.+.|+.||.
T Consensus 217 ~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~~~i~~Dl 260 (557)
T 1uwk_A 217 TDLDDALVRIAKYTAEGKAISI-------------ALHGNAAEILPELVKRGVRPDM 260 (557)
T ss_dssp SSHHHHHHHHHHHHHTTCCCEE-------------EEESCHHHHHHHHHHHTCCCSE
T ss_pred CCHHHHHHHHHHHHHcCCceEE-------------EEeccHHHHHHHHHHCCCCCCC
Confidence 4566666666666665543222 2334556677777776766653
No 439
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=20.56 E-value=1.5e+02 Score=17.83 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 035645 15 LLVQGLLNAGYLESAKQMVNK 35 (217)
Q Consensus 15 ~ll~~~~~~g~~~~a~~~~~~ 35 (217)
..+...++.|+.+.+..+++.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~ 24 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMAN 24 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHc
Confidence 344555666777666665553
No 440
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.41 E-value=1.5e+02 Score=17.63 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=14.3
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 035645 20 LLNAGYLESAKQMVNKMIK 38 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~ 38 (217)
.++.|+|++|.+.+++..+
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4577888888888877644
No 441
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.30 E-value=1.4e+02 Score=17.46 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 035645 20 LLNAGYLESAKQMVNKMIK 38 (217)
Q Consensus 20 ~~~~g~~~~a~~~~~~m~~ 38 (217)
..+.|+|++|.+.+++..+
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4566777777777766543
No 442
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.07 E-value=2.6e+02 Score=20.42 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=47.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC---CC---cccHHHHHHHHH------------hc---CChHHHHHHHHHHHhcCCCCC
Q 035645 91 SKAGMIDEAFRLLHNLVEDGHN---PF---PSLYAPIIKGAF------------RR---GQFDDAFCFFSEIKIKGHPPN 149 (217)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~---~~---~~~~~~ll~~~~------------~~---g~~~~a~~~~~~~~~~~~~~~ 149 (217)
...|++++|...|+.++..=.- .+ ..-...++..|. +. .+.....++-..+-.-.+.|.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp~ 204 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSPI 204 (325)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCCHH
T ss_pred HhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCcHH
Confidence 5678899999888887643100 01 111222222221 11 122333333333333334433
Q ss_pred --HhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 035645 150 --RPVYTTLITMCGRGGRFVEAANYLMEMTEMGL 181 (217)
Q Consensus 150 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 181 (217)
.-+...-+....+.+++..|..+-+++++.+.
T Consensus 205 H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 205 HRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 23444556666778888888888888887664
Done!