BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035646
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 99/151 (65%), Gaps = 2/151 (1%)
Query: 14 LPHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEES 73
P +Y+VFLSFRG DTR+ FTD LY +L I FRDD EL +G+ I P L +AI++S
Sbjct: 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQS 90
Query: 74 KISIVVFSRSYAFSTWCLDELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFA 133
KI + + S YA S WCL EL I+ + + ++++ PIFY V+P+ VR QT +++AF
Sbjct: 91 KIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFR 150
Query: 134 QYEEVFSENIEKVQKWRDALREVANISGWEL 164
++ F + + +Q W+DAL++V ++ GW +
Sbjct: 151 KHANKF--DGQTIQNWKDALKKVGDLKGWHI 179
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 18 KYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISI 77
KYDVFLSFRG DTR NF LY L + I F+DDKELE G+ SP L IE S+ ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 78 VVFSRSYAFSTWCLDELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYEE 137
VV S +YA S+WCLDELV I++ + + V PIFY VEP VR QT E F ++
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGS-ITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 138 VFSENIEKVQKWRDALREVANISG 161
E+ EKV KWR AL A +SG
Sbjct: 127 --REDPEKVLKWRQALTNFAQLSG 148
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 15 PHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESK 74
PH D+F+S ED + +F + L L G V+ DD L G+S+ + K + S+
Sbjct: 20 PH---DIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSR 75
Query: 75 ISIVVFSRSYAFSTWCLDELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFA 133
IVV S + W EL + + +++ +++ PI++ V V + T + A
Sbjct: 76 FGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRIL-PIWHKVSKDEVASFSPTMADKLA 133
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 18 KYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISI 77
++ F+S+ G D+ + L L+++G + ++ G+SI + IE+S SI
Sbjct: 12 QFHAFISYSGHDSFW-VKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 78 VVFSRSYAFSTWCLDEL 94
V S ++ S WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 350 ALKVLGSFLYGKTTKEWESALKRLKRE-----SENEILDILKISFDGLRETEKKIFL 401
A K+L + + + T++ E+A++ L + ENE +D ++ +DG+R+ K + +
Sbjct: 494 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLM 550
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 350 ALKVLGSFLYGKTTKEWESALKRLKRE-----SENEILDILKISFDGLRETEKKIFLDIA 404
A K+L + + + T++ E+A++ L + ENE +D ++ +DG+R+ K + L I
Sbjct: 193 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAV-LXIR 251
Query: 405 CFYQGENRDYVTKILD 420
+ ++ D+ T+ D
Sbjct: 252 TPEELDDSDFETEDFD 267
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 350 ALKVLGSFLYGKTTKEWESALKRLKRE-----SENEILDILKISFDGLRETEKKIF 400
A K+L + + + T++ E+A++ L + ENE +D ++ +DG+R+ K +
Sbjct: 199 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAVL 254
>pdb|3BTI|B Chain B, Crystal Structure Of Qacr(E58q) Bound To Berberine
pdb|3BTI|D Chain D, Crystal Structure Of Qacr(E58q) Bound To Berberine
pdb|3BTI|A Chain A, Crystal Structure Of Qacr(E58q) Bound To Berberine
pdb|3BTI|E Chain E, Crystal Structure Of Qacr(E58q) Bound To Berberine
pdb|3BTJ|B Chain B, Crystal Structure Of Qacr(E58q) Bound To Dequalinium
pdb|3BTJ|D Chain D, Crystal Structure Of Qacr(E58q) Bound To Dequalinium
pdb|3BTJ|A Chain A, Crystal Structure Of Qacr(E58q) Bound To Dequalinium
pdb|3BTJ|E Chain E, Crystal Structure Of Qacr(E58q) Bound To Dequalinium
pdb|3BTL|B Chain B, Crystal Structure Of Qacr(E58q) Bound To Malachite Green
pdb|3BTL|D Chain D, Crystal Structure Of Qacr(E58q) Bound To Malachite Green
pdb|3BTL|A Chain A, Crystal Structure Of Qacr(E58q) Bound To Malachite Green
pdb|3BTL|E Chain E, Crystal Structure Of Qacr(E58q) Bound To Malachite Green
Length = 188
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 489 TGTKTVEVIKL-ENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLE--------Y 539
T T E++KL E+ HF T N FL+++N+ + E ++ Y
Sbjct: 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEQSKWQEQWKKEQIKAKTNREKFY 80
Query: 540 LSNELRLLERHGYPLRSLPSNFQPD--KIVELNMRYSRIEQMWC 581
L NEL L + YPL++ F + K +N + +++E +
Sbjct: 81 LYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYI 124
>pdb|3BR5|B Chain B, Crystal Structure Of The Complex Of Rhodamine 6g Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR5|D Chain D, Crystal Structure Of The Complex Of Rhodamine 6g Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR5|A Chain A, Crystal Structure Of The Complex Of Rhodamine 6g Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR5|E Chain E, Crystal Structure Of The Complex Of Rhodamine 6g Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
Length = 194
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 489 TGTKTVEVIKL-ENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLE--------Y 539
T T E++KL E+ HF T N FL+++N+ + E ++ Y
Sbjct: 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKCKTNREKFY 80
Query: 540 LSNELRLLERHGYPLRSLPSNFQPD--KIVELNMRYSRIEQMW 580
L NEL L ++ YPL++ F + K +N + +++E +
Sbjct: 81 LYNELSLTTQYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKY 123
>pdb|3BR3|B Chain B, Crystal Structure Of The Complex Of Ethidium Bound To
Qacr(e90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR3|A Chain A, Crystal Structure Of The Complex Of Ethidium Bound To
Qacr(e90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3PM1|B Chain B, Structure Of Qacr E90q Bound To Ethidium
pdb|3PM1|A Chain A, Structure Of Qacr E90q Bound To Ethidium
Length = 194
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 489 TGTKTVEVIKL-ENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLE--------Y 539
T T E++KL E+ HF T N FL+++N+ + E ++ Y
Sbjct: 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKSEQIKAKTNREKFY 80
Query: 540 LSNELRLLERHGYPLRSLPSNFQPD--KIVELNMRYSRIEQMWC 581
L NEL L ++ YPL++ F + K +N + +++E +
Sbjct: 81 LYNELSLTTQYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYI 124
>pdb|3BQZ|B Chain B, Crystal Structure Of The Complex Of Malachite Green Bound
To Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BQZ|A Chain A, Crystal Structure Of The Complex Of Malachite Green Bound
To Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR1|B Chain B, Crystal Structure Of The Complex Of Dequalinium Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR1|D Chain D, Crystal Structure Of The Complex Of Dequalinium Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR1|A Chain A, Crystal Structure Of The Complex Of Dequalinium Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
pdb|3BR1|E Chain E, Crystal Structure Of The Complex Of Dequalinium Bound To
Qacr(E90q), A Mutant Of A Multidrug Binding
Transcriptional Repressor
Length = 194
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 489 TGTKTVEVIKL-ENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLE--------Y 539
T T E++KL E+ HF T N FL+++N+ + E ++ Y
Sbjct: 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFY 80
Query: 540 LSNELRLLERHGYPLRSLPSNFQPD--KIVELNMRYSRIEQMWC 581
L NEL L ++ YPL++ F + K +N + +++E +
Sbjct: 81 LYNELSLTTQYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYI 124
>pdb|3BT9|B Chain B, Crystal Structure Of Qacr(E57q) Bound To Dequalinium
pdb|3BT9|D Chain D, Crystal Structure Of Qacr(E57q) Bound To Dequalinium
pdb|3BT9|A Chain A, Crystal Structure Of Qacr(E57q) Bound To Dequalinium
pdb|3BT9|E Chain E, Crystal Structure Of Qacr(E57q) Bound To Dequalinium
pdb|3BTC|B Chain B, Crystal Structure Of Qacr(E57q) Bound To Malachite Green
pdb|3BTC|D Chain D, Crystal Structure Of Qacr(E57q) Bound To Malachite Green
pdb|3BTC|A Chain A, Crystal Structure Of Qacr(E57q) Bound To Malachite Green
pdb|3BTC|E Chain E, Crystal Structure Of Qacr(E57q) Bound To Malachite Green
Length = 188
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 489 TGTKTVEVIKL-ENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLE--------Y 539
T T E++KL E+ HF T N FL+++N++ + E ++ Y
Sbjct: 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIQESKWQEQWKKEQIKAKTNREKFY 80
Query: 540 LSNELRLLERHGYPLRSLPSNFQPD--KIVELNMRYSRIEQMWC 581
L NEL L + YPL++ F + K +N + +++E +
Sbjct: 81 LYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYI 124
>pdb|1JUS|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
pdb|1JUS|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Rhodamine 6g
Length = 194
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 489 TGTKTVEVIKL-ENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLE--------Y 539
T T E++KL E+ HF T N FL+++N+ + E ++ Y
Sbjct: 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFY 80
Query: 540 LSNELRLLERHGYPLRSLPSNFQPD--KIVELNMRYSRIEQMWC 581
L NEL L + YPL++ F + K +N + +++E +
Sbjct: 81 LYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKXNKLENKYI 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,557,576
Number of Sequences: 62578
Number of extensions: 673132
Number of successful extensions: 1623
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 33
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)