Query 035646
Match_columns 584
No_of_seqs 437 out of 3440
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.3E-92 1.6E-96 823.3 51.9 558 14-584 8-631 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-55 3.3E-60 492.2 24.3 389 178-576 161-630 (889)
3 PLN03194 putative disease resi 100.0 2.2E-38 4.7E-43 283.0 13.4 146 10-173 18-166 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.6E-36 5.6E-41 304.5 18.0 243 180-426 1-283 (287)
5 PF01582 TIR: TIR domain; Int 99.8 3.2E-21 6.9E-26 172.5 4.9 134 21-154 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 1.2E-19 2.5E-24 162.4 12.0 137 18-157 1-138 (140)
7 PF13676 TIR_2: TIR domain; PD 99.6 4.5E-16 9.7E-21 131.0 4.7 87 21-115 1-87 (102)
8 PRK04841 transcriptional regul 99.5 8E-13 1.7E-17 154.5 24.6 271 174-464 13-335 (903)
9 PRK00411 cdc6 cell division co 99.3 4.2E-10 9E-15 118.8 23.8 268 170-442 25-358 (394)
10 COG3899 Predicted ATPase [Gene 99.2 2.1E-10 4.6E-15 130.3 16.7 287 176-464 1-389 (849)
11 TIGR02928 orc1/cdc6 family rep 99.2 5.7E-09 1.2E-13 109.0 24.4 270 170-443 10-351 (365)
12 COG2909 MalT ATP-dependent tra 99.2 1.7E-09 3.6E-14 117.2 19.9 275 174-465 18-342 (894)
13 TIGR00635 ruvB Holliday juncti 99.1 1.3E-09 2.8E-14 110.8 14.8 258 175-447 4-294 (305)
14 PF05729 NACHT: NACHT domain 99.1 6.9E-10 1.5E-14 101.8 10.5 139 199-345 1-160 (166)
15 PF01637 Arch_ATPase: Archaeal 99.1 7.5E-10 1.6E-14 107.6 10.3 162 177-345 1-201 (234)
16 PRK00080 ruvB Holliday junctio 99.0 1.3E-09 2.8E-14 111.8 12.1 257 175-446 25-314 (328)
17 COG3903 Predicted ATPase [Gene 98.8 3.1E-09 6.7E-14 106.8 5.0 256 198-464 14-317 (414)
18 TIGR03015 pepcterm_ATPase puta 98.8 2.6E-07 5.7E-12 92.1 16.9 141 198-345 43-202 (269)
19 KOG3678 SARM protein (with ste 98.7 2.3E-08 4.9E-13 100.5 7.4 94 15-115 609-710 (832)
20 COG2256 MGS1 ATPase related to 98.7 1.2E-07 2.5E-12 95.0 11.5 137 175-345 30-173 (436)
21 PF13173 AAA_14: AAA domain 98.6 7.2E-08 1.6E-12 84.5 6.8 119 199-340 3-127 (128)
22 PTZ00112 origin recognition co 98.6 3.2E-06 6.9E-11 93.0 20.2 180 173-359 753-969 (1164)
23 PF13191 AAA_16: AAA ATPase do 98.6 2E-07 4.2E-12 87.2 9.8 50 176-225 1-51 (185)
24 cd00009 AAA The AAA+ (ATPases 98.6 6.4E-07 1.4E-11 79.8 12.2 123 178-319 1-131 (151)
25 PRK13342 recombination factor 98.6 2.3E-06 4.9E-11 90.6 18.0 139 175-345 12-161 (413)
26 PRK06893 DNA replication initi 98.6 1E-06 2.2E-11 85.4 13.6 118 198-345 39-171 (229)
27 PF13401 AAA_22: AAA domain; P 98.6 6E-07 1.3E-11 78.8 10.7 113 198-317 4-125 (131)
28 PRK07003 DNA polymerase III su 98.5 6.8E-06 1.5E-10 89.9 19.5 161 175-345 16-188 (830)
29 PTZ00202 tuzin; Provisional 98.5 4.6E-05 9.9E-10 78.2 24.0 158 174-345 261-431 (550)
30 PRK12402 replication factor C 98.5 1.1E-05 2.5E-10 83.1 19.7 166 175-345 15-194 (337)
31 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.3E-06 4.9E-11 82.9 12.6 134 180-345 22-169 (226)
32 COG1474 CDC6 Cdc6-related prot 98.4 3E-05 6.5E-10 80.0 21.3 266 169-442 11-334 (366)
33 PRK14960 DNA polymerase III su 98.4 2.1E-05 4.6E-10 85.2 19.9 161 175-345 15-187 (702)
34 PRK12323 DNA polymerase III su 98.4 2.7E-05 5.9E-10 84.2 19.9 166 175-345 16-193 (700)
35 TIGR01242 26Sp45 26S proteasom 98.4 6E-06 1.3E-10 86.0 14.6 148 174-345 121-303 (364)
36 PRK14961 DNA polymerase III su 98.4 3.1E-05 6.7E-10 80.5 19.6 160 175-345 16-188 (363)
37 PRK14949 DNA polymerase III su 98.4 3.8E-05 8.3E-10 85.8 21.0 158 175-345 16-188 (944)
38 KOG2028 ATPase related to the 98.3 3.6E-06 7.9E-11 83.0 10.7 132 187-345 153-291 (554)
39 PRK04195 replication factor C 98.3 2.7E-05 5.8E-10 84.2 18.0 145 175-345 14-170 (482)
40 PRK14957 DNA polymerase III su 98.3 5.8E-05 1.3E-09 81.5 20.0 147 175-345 16-188 (546)
41 PLN03025 replication factor C 98.3 5E-05 1.1E-09 77.6 18.3 151 175-345 13-168 (319)
42 PRK14951 DNA polymerase III su 98.3 8.9E-05 1.9E-09 81.2 21.0 162 175-345 16-193 (618)
43 PRK08691 DNA polymerase III su 98.2 6.7E-05 1.4E-09 82.1 19.3 161 175-345 16-188 (709)
44 PRK14956 DNA polymerase III su 98.2 5.2E-05 1.1E-09 79.9 17.9 165 175-345 18-190 (484)
45 PRK00440 rfc replication facto 98.2 6.5E-05 1.4E-09 76.8 18.3 151 175-345 17-171 (319)
46 PRK08727 hypothetical protein; 98.2 2.8E-05 6E-10 75.6 14.2 139 175-345 19-172 (233)
47 PF00308 Bac_DnaA: Bacterial d 98.2 2.2E-05 4.9E-10 75.4 13.3 155 198-373 34-212 (219)
48 PRK14963 DNA polymerase III su 98.2 0.0001 2.2E-09 79.4 19.4 158 175-345 14-185 (504)
49 PRK14962 DNA polymerase III su 98.2 0.00014 3E-09 77.7 20.1 143 175-345 14-186 (472)
50 PRK07940 DNA polymerase III su 98.2 3.1E-05 6.7E-10 80.7 14.5 156 175-345 5-186 (394)
51 PRK13341 recombination factor 98.2 1E-05 2.2E-10 90.4 11.5 139 175-345 28-178 (725)
52 PRK07471 DNA polymerase III su 98.2 0.00014 3E-09 75.2 18.5 168 175-345 19-210 (365)
53 PRK14958 DNA polymerase III su 98.2 0.00014 3E-09 78.5 19.3 148 175-345 16-188 (509)
54 PRK07994 DNA polymerase III su 98.1 0.00021 4.5E-09 78.6 20.3 161 175-345 16-188 (647)
55 PRK05896 DNA polymerase III su 98.1 0.00017 3.8E-09 78.1 19.3 160 175-345 16-188 (605)
56 PRK05564 DNA polymerase III su 98.1 4.4E-05 9.4E-10 77.8 14.2 150 175-345 4-162 (313)
57 PF13855 LRR_8: Leucine rich r 98.1 3.3E-06 7.1E-11 63.3 4.4 55 521-576 1-61 (61)
58 PRK07764 DNA polymerase III su 98.1 0.00019 4.2E-09 81.4 20.3 161 175-345 15-189 (824)
59 PRK14964 DNA polymerase III su 98.1 0.00018 3.9E-09 76.7 19.0 147 175-345 13-185 (491)
60 TIGR02639 ClpA ATP-dependent C 98.1 1.8E-05 3.8E-10 89.9 12.2 148 175-345 182-355 (731)
61 PRK08903 DnaA regulatory inact 98.1 2.7E-05 6E-10 75.4 11.8 133 178-345 22-167 (227)
62 PF05496 RuvB_N: Holliday junc 98.1 2.9E-05 6.4E-10 73.0 11.3 141 174-345 23-189 (233)
63 PF08937 DUF1863: MTH538 TIR-l 98.1 4.6E-06 1E-10 73.1 5.8 90 19-115 1-108 (130)
64 PRK05642 DNA replication initi 98.1 5.9E-05 1.3E-09 73.3 14.0 118 198-345 45-176 (234)
65 PRK03992 proteasome-activating 98.1 7.3E-05 1.6E-09 78.4 15.7 148 174-345 130-312 (389)
66 PRK08084 DNA replication initi 98.1 6.1E-05 1.3E-09 73.3 13.9 139 175-345 23-177 (235)
67 TIGR02397 dnaX_nterm DNA polym 98.1 0.00041 8.9E-09 72.1 20.5 147 175-345 14-186 (355)
68 TIGR02881 spore_V_K stage V sp 98.1 3.2E-05 6.8E-10 76.7 11.1 148 176-345 7-188 (261)
69 PF12799 LRR_4: Leucine Rich r 98.0 2.5E-06 5.5E-11 59.0 2.2 39 543-581 2-41 (44)
70 PHA02544 44 clamp loader, smal 98.0 0.00015 3.3E-09 74.0 16.3 145 175-345 21-170 (316)
71 CHL00095 clpC Clp protease ATP 98.0 6.2E-05 1.3E-09 86.5 14.8 149 175-345 179-351 (821)
72 PRK09087 hypothetical protein; 98.0 0.00011 2.3E-09 71.0 14.1 107 198-345 44-163 (226)
73 TIGR03345 VI_ClpV1 type VI sec 98.0 7E-05 1.5E-09 85.8 14.5 149 175-345 187-360 (852)
74 PRK14969 DNA polymerase III su 98.0 0.00036 7.7E-09 75.9 19.1 160 175-345 16-188 (527)
75 PRK06645 DNA polymerase III su 98.0 0.00043 9.4E-09 74.3 19.1 162 175-345 21-197 (507)
76 cd01128 rho_factor Transcripti 98.0 8.1E-06 1.7E-10 79.6 5.2 92 198-291 16-114 (249)
77 PRK09111 DNA polymerase III su 98.0 0.00048 1E-08 75.6 19.5 157 175-345 24-201 (598)
78 PRK14952 DNA polymerase III su 98.0 0.00094 2E-08 73.0 21.1 161 175-345 13-187 (584)
79 TIGR00678 holB DNA polymerase 97.9 0.00023 4.9E-09 66.8 14.3 67 279-345 95-165 (188)
80 PF14516 AAA_35: AAA-like doma 97.9 0.0026 5.7E-08 65.2 23.1 184 174-361 10-246 (331)
81 TIGR03689 pup_AAA proteasome A 97.9 7.9E-05 1.7E-09 79.7 12.2 152 175-345 182-375 (512)
82 PRK07952 DNA replication prote 97.9 0.00035 7.5E-09 67.9 15.5 50 184-233 85-134 (244)
83 PRK10865 protein disaggregatio 97.9 0.00015 3.2E-09 83.5 14.8 48 175-224 178-225 (857)
84 PRK11034 clpA ATP-dependent Cl 97.9 0.00014 2.9E-09 82.0 14.1 149 175-345 186-359 (758)
85 KOG0617 Ras suppressor protein 97.9 1.3E-06 2.8E-11 77.4 -1.7 86 491-583 78-169 (264)
86 PRK06620 hypothetical protein; 97.9 0.00018 4E-09 68.7 12.4 104 199-345 45-157 (214)
87 PF00004 AAA: ATPase family as 97.9 0.00014 3E-09 63.6 10.8 23 201-223 1-23 (132)
88 KOG2543 Origin recognition com 97.9 6.9E-05 1.5E-09 74.9 9.5 168 174-348 5-194 (438)
89 PRK09376 rho transcription ter 97.9 2.6E-05 5.7E-10 79.5 6.8 91 198-290 169-266 (416)
90 PRK14088 dnaA chromosomal repl 97.9 0.00048 1E-08 73.3 16.7 128 198-345 130-273 (440)
91 PRK14953 DNA polymerase III su 97.9 0.0021 4.6E-08 69.1 21.5 157 175-345 16-188 (486)
92 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00021 4.4E-09 82.5 14.8 149 175-345 173-346 (852)
93 PRK12422 chromosomal replicati 97.9 0.00056 1.2E-08 72.7 16.8 127 198-345 141-281 (445)
94 TIGR00362 DnaA chromosomal rep 97.8 0.00042 9.2E-09 73.3 15.7 127 198-345 136-278 (405)
95 PRK07133 DNA polymerase III su 97.8 0.0019 4.2E-08 71.6 21.0 158 175-345 18-187 (725)
96 PRK14959 DNA polymerase III su 97.8 0.002 4.3E-08 70.4 20.7 156 175-345 16-188 (624)
97 PTZ00454 26S protease regulato 97.8 0.00072 1.6E-08 70.7 16.7 148 175-345 145-326 (398)
98 PF05621 TniB: Bacterial TniB 97.8 0.00028 6.2E-09 69.5 12.4 112 175-291 34-156 (302)
99 PRK08116 hypothetical protein; 97.8 0.00013 2.8E-09 72.3 10.2 102 199-318 115-221 (268)
100 PRK00149 dnaA chromosomal repl 97.8 0.00056 1.2E-08 73.4 15.8 150 175-345 123-290 (450)
101 PRK12377 putative replication 97.8 0.00075 1.6E-08 65.8 15.2 36 198-233 101-136 (248)
102 PRK14970 DNA polymerase III su 97.8 0.001 2.2E-08 69.5 17.3 149 175-345 17-177 (367)
103 PRK14087 dnaA chromosomal repl 97.8 0.0005 1.1E-08 73.3 15.1 152 175-345 116-285 (450)
104 PRK14955 DNA polymerase III su 97.8 0.0002 4.4E-09 75.4 11.6 166 175-345 16-196 (397)
105 TIGR01241 FtsH_fam ATP-depende 97.7 0.00055 1.2E-08 74.4 15.1 175 174-371 54-269 (495)
106 PRK09112 DNA polymerase III su 97.7 0.00056 1.2E-08 70.3 14.2 163 174-345 22-210 (351)
107 PRK14950 DNA polymerase III su 97.7 0.0028 6.2E-08 70.1 20.7 161 175-345 16-189 (585)
108 PRK14086 dnaA chromosomal repl 97.7 0.00061 1.3E-08 74.0 14.9 151 174-345 288-456 (617)
109 CHL00176 ftsH cell division pr 97.7 0.00052 1.1E-08 75.9 14.6 149 174-345 182-363 (638)
110 TIGR00767 rho transcription te 97.7 4.9E-05 1.1E-09 77.9 5.9 92 198-291 168-266 (415)
111 smart00382 AAA ATPases associa 97.7 0.00017 3.6E-09 63.4 8.8 34 199-232 3-36 (148)
112 PRK08451 DNA polymerase III su 97.7 0.0024 5.2E-08 68.9 18.9 158 175-345 14-186 (535)
113 PRK14965 DNA polymerase III su 97.7 0.0024 5.1E-08 70.4 19.1 156 175-345 16-188 (576)
114 PRK06305 DNA polymerase III su 97.7 0.003 6.4E-08 67.5 19.2 159 175-345 17-190 (451)
115 COG1373 Predicted ATPase (AAA+ 97.7 0.0013 2.9E-08 69.0 16.2 218 182-441 24-269 (398)
116 TIGR02903 spore_lon_C ATP-depe 97.7 0.00039 8.6E-09 77.0 12.6 46 175-222 154-199 (615)
117 TIGR02880 cbbX_cfxQ probable R 97.7 0.00057 1.2E-08 68.4 12.6 126 199-345 59-205 (284)
118 PRK07399 DNA polymerase III su 97.6 0.0034 7.4E-08 63.7 18.1 165 175-345 4-192 (314)
119 PF05673 DUF815: Protein of un 97.6 0.0003 6.4E-09 67.2 9.7 52 174-225 26-79 (249)
120 PRK14954 DNA polymerase III su 97.6 0.0023 4.9E-08 70.5 17.8 166 175-345 16-196 (620)
121 COG1222 RPT1 ATP-dependent 26S 97.6 0.0013 2.7E-08 65.6 14.1 146 176-345 152-332 (406)
122 PTZ00361 26 proteosome regulat 97.6 0.00054 1.2E-08 72.2 12.3 148 175-345 183-364 (438)
123 PF08357 SEFIR: SEFIR domain; 97.6 6.5E-05 1.4E-09 67.7 4.7 64 21-84 3-70 (150)
124 PF10443 RNA12: RNA12 protein; 97.6 0.0086 1.9E-07 61.9 20.1 39 180-220 1-40 (431)
125 KOG4658 Apoptotic ATPase [Sign 97.6 5.5E-05 1.2E-09 86.5 4.8 62 522-584 546-615 (889)
126 PRK06647 DNA polymerase III su 97.6 0.0082 1.8E-07 65.7 21.2 157 175-345 16-188 (563)
127 PRK08181 transposase; Validate 97.6 0.00038 8.3E-09 68.7 9.7 99 199-318 107-209 (269)
128 PRK14948 DNA polymerase III su 97.6 0.0099 2.1E-07 65.9 21.7 162 175-345 16-190 (620)
129 CHL00181 cbbX CbbX; Provisiona 97.6 0.00081 1.8E-08 67.3 12.0 126 199-345 60-206 (287)
130 PRK05563 DNA polymerase III su 97.6 0.0086 1.9E-07 65.7 20.9 156 175-345 16-188 (559)
131 COG2255 RuvB Holliday junction 97.5 0.002 4.4E-08 62.3 13.8 52 175-226 26-80 (332)
132 PF07725 LRR_3: Leucine Rich R 97.5 5.1E-05 1.1E-09 42.0 1.6 20 565-584 1-20 (20)
133 KOG0444 Cytoskeletal regulator 97.5 2.9E-05 6.2E-10 81.8 0.8 59 515-574 120-183 (1255)
134 PRK14971 DNA polymerase III su 97.5 0.011 2.3E-07 65.6 20.9 158 175-345 17-190 (614)
135 COG0466 Lon ATP-dependent Lon 97.5 0.003 6.4E-08 68.5 15.7 157 174-345 322-505 (782)
136 PRK11331 5-methylcytosine-spec 97.5 0.00034 7.5E-09 73.0 8.5 104 175-291 175-283 (459)
137 PRK08058 DNA polymerase III su 97.5 0.0044 9.6E-08 63.5 16.6 162 176-350 6-186 (329)
138 COG0542 clpA ATP-binding subun 97.5 0.0011 2.3E-08 73.6 12.2 133 174-318 490-644 (786)
139 PLN03150 hypothetical protein; 97.4 9E-05 2E-09 82.6 3.6 69 513-582 434-509 (623)
140 TIGR01243 CDC48 AAA family ATP 97.4 0.0022 4.8E-08 73.1 14.9 51 175-225 178-239 (733)
141 PRK09361 radB DNA repair and r 97.4 0.00056 1.2E-08 66.1 8.5 49 185-233 10-58 (225)
142 KOG0617 Ras suppressor protein 97.4 3.4E-05 7.4E-10 68.6 -0.2 67 510-577 45-115 (264)
143 PRK09183 transposase/IS protei 97.4 0.00072 1.6E-08 66.7 9.0 34 199-232 103-136 (259)
144 PRK05707 DNA polymerase III su 97.4 0.0035 7.5E-08 64.0 14.0 67 279-345 105-175 (328)
145 KOG2227 Pre-initiation complex 97.4 0.0035 7.6E-08 64.6 13.7 182 174-360 149-360 (529)
146 COG0593 DnaA ATPase involved i 97.3 0.0026 5.6E-08 65.8 12.7 129 197-345 112-254 (408)
147 KOG0989 Replication factor C, 97.3 0.014 3.1E-07 57.1 16.9 155 174-345 35-198 (346)
148 TIGR01243 CDC48 AAA family ATP 97.3 0.0051 1.1E-07 70.2 16.4 170 175-368 453-663 (733)
149 TIGR02639 ClpA ATP-dependent C 97.3 0.0039 8.5E-08 71.0 15.4 50 174-223 453-509 (731)
150 PRK06526 transposase; Provisio 97.3 0.00046 1E-08 67.7 6.9 26 199-224 99-124 (254)
151 PF13177 DNA_pol3_delta2: DNA 97.3 0.0024 5.2E-08 58.2 11.2 133 179-336 1-162 (162)
152 PF13855 LRR_8: Leucine rich r 97.3 0.00017 3.7E-09 53.9 2.9 40 543-582 2-43 (61)
153 PRK13531 regulatory ATPase Rav 97.3 0.0023 5E-08 67.5 11.9 46 174-223 19-64 (498)
154 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0021 4.6E-08 73.8 12.6 50 174-223 565-621 (852)
155 KOG0991 Replication factor C, 97.3 0.0034 7.5E-08 58.8 11.4 46 175-222 27-72 (333)
156 COG0470 HolB ATPase involved i 97.3 0.0025 5.4E-08 65.2 11.9 146 176-342 2-175 (325)
157 PF12799 LRR_4: Leucine Rich r 97.3 0.00016 3.4E-09 50.0 1.8 38 521-559 1-41 (44)
158 PRK10865 protein disaggregatio 97.2 0.003 6.5E-08 72.8 13.2 118 174-302 567-694 (857)
159 TIGR00602 rad24 checkpoint pro 97.2 0.0013 2.8E-08 72.3 9.7 50 174-223 83-135 (637)
160 PRK06835 DNA replication prote 97.2 0.0007 1.5E-08 68.9 7.1 35 199-233 184-218 (329)
161 CHL00195 ycf46 Ycf46; Provisio 97.2 0.013 2.8E-07 63.0 16.8 148 175-345 228-402 (489)
162 KOG0741 AAA+-type ATPase [Post 97.2 0.0021 4.6E-08 67.0 10.2 124 196-345 536-683 (744)
163 PRK10536 hypothetical protein; 97.2 0.0015 3.3E-08 63.2 8.7 132 175-318 55-213 (262)
164 COG3267 ExeA Type II secretory 97.2 0.011 2.4E-07 56.5 14.2 146 195-345 48-210 (269)
165 cd01393 recA_like RecA is a b 97.2 0.0019 4.1E-08 62.4 9.3 49 185-233 6-60 (226)
166 PF01695 IstB_IS21: IstB-like 97.2 0.00039 8.5E-09 64.4 4.2 36 198-233 47-82 (178)
167 TIGR02237 recomb_radB DNA repa 97.2 0.001 2.2E-08 63.5 7.1 44 190-233 4-47 (209)
168 cd01394 radB RadB. The archaea 97.1 0.001 2.2E-08 63.9 7.0 50 184-233 5-54 (218)
169 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0032 6.9E-08 72.8 12.1 134 174-318 564-718 (852)
170 PF04665 Pox_A32: Poxvirus A32 97.1 0.0008 1.7E-08 64.7 5.8 35 199-233 14-48 (241)
171 KOG0444 Cytoskeletal regulator 97.1 6.9E-05 1.5E-09 79.0 -1.7 74 508-582 209-286 (1255)
172 cd01120 RecA-like_NTPases RecA 97.1 0.0024 5.1E-08 57.8 8.7 34 200-233 1-34 (165)
173 CHL00095 clpC Clp protease ATP 97.1 0.0055 1.2E-07 70.7 13.5 134 174-318 508-662 (821)
174 PRK08939 primosomal protein Dn 97.1 0.0023 5E-08 64.6 9.2 119 179-318 135-261 (306)
175 PRK06921 hypothetical protein; 97.1 0.00078 1.7E-08 66.6 5.7 36 198-233 117-153 (266)
176 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0062 1.3E-07 60.3 12.1 25 199-223 22-46 (262)
177 KOG2228 Origin recognition com 97.1 0.0067 1.4E-07 60.1 11.8 168 175-345 24-216 (408)
178 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0016 3.4E-08 63.4 7.7 49 185-233 6-60 (235)
179 PF14532 Sigma54_activ_2: Sigm 97.1 0.0009 1.9E-08 59.3 5.4 45 178-222 1-45 (138)
180 PRK12608 transcription termina 97.1 0.0024 5.2E-08 65.3 9.0 90 199-290 134-230 (380)
181 PRK08118 topology modulation p 97.1 0.00047 1E-08 63.2 3.6 33 200-232 3-38 (167)
182 TIGR00763 lon ATP-dependent pr 97.1 0.0059 1.3E-07 70.0 13.2 53 174-226 319-375 (775)
183 PLN03210 Resistant to P. syrin 97.0 0.0014 3E-08 78.6 8.2 63 517-580 653-721 (1153)
184 COG2812 DnaX DNA polymerase II 97.0 0.012 2.7E-07 62.8 14.0 172 175-360 16-212 (515)
185 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0022 4.7E-08 57.8 7.1 116 199-319 3-139 (159)
186 COG2607 Predicted ATPase (AAA+ 97.0 0.012 2.6E-07 55.6 12.1 55 174-228 59-115 (287)
187 PRK08769 DNA polymerase III su 97.0 0.019 4.2E-07 58.1 14.8 154 184-345 13-182 (319)
188 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0079 1.7E-07 64.0 12.0 94 174-290 189-292 (802)
189 PRK06067 flagellar accessory p 96.9 0.0043 9.2E-08 60.4 9.3 50 184-233 11-60 (234)
190 cd01131 PilT Pilus retraction 96.9 0.0024 5.3E-08 60.3 7.4 110 199-320 2-111 (198)
191 PF14580 LRR_9: Leucine-rich r 96.9 0.00047 1E-08 63.3 2.3 119 451-580 3-129 (175)
192 PF13207 AAA_17: AAA domain; P 96.9 0.00078 1.7E-08 58.0 3.5 23 200-222 1-23 (121)
193 PRK04296 thymidine kinase; Pro 96.9 0.0023 5E-08 60.1 6.9 111 199-319 3-117 (190)
194 PF13671 AAA_33: AAA domain; P 96.9 0.0056 1.2E-07 54.3 9.1 24 200-223 1-24 (143)
195 PRK07261 topology modulation p 96.9 0.0024 5.3E-08 58.8 6.8 23 200-222 2-24 (171)
196 PRK06964 DNA polymerase III su 96.9 0.059 1.3E-06 55.1 17.3 67 279-345 131-201 (342)
197 PLN00113 leucine-rich repeat r 96.9 0.00065 1.4E-08 80.5 3.6 85 491-581 163-254 (968)
198 PRK10787 DNA-binding ATP-depen 96.9 0.0072 1.6E-07 68.8 11.6 53 174-226 321-377 (784)
199 PRK06090 DNA polymerase III su 96.9 0.074 1.6E-06 53.9 17.7 67 279-345 107-177 (319)
200 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0013 2.8E-08 66.9 4.9 50 174-223 50-103 (361)
201 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0067 1.5E-07 59.1 9.8 50 184-233 7-56 (237)
202 COG1484 DnaC DNA replication p 96.8 0.0049 1.1E-07 60.5 8.8 73 197-289 104-176 (254)
203 COG0542 clpA ATP-binding subun 96.8 0.0019 4E-08 71.8 6.3 148 175-345 170-343 (786)
204 PRK11034 clpA ATP-dependent Cl 96.8 0.0075 1.6E-07 68.2 11.2 50 174-223 457-513 (758)
205 PRK06762 hypothetical protein; 96.8 0.0082 1.8E-07 54.9 9.6 25 198-222 2-26 (166)
206 PRK06696 uridine kinase; Valid 96.8 0.0019 4E-08 62.4 5.1 45 180-224 3-48 (223)
207 PF02562 PhoH: PhoH-like prote 96.8 0.002 4.4E-08 60.6 5.2 125 181-318 6-156 (205)
208 PRK05541 adenylylsulfate kinas 96.8 0.0043 9.4E-08 57.4 7.4 36 198-233 7-42 (176)
209 PLN00113 leucine-rich repeat r 96.7 0.0009 2E-08 79.2 3.4 85 491-581 187-278 (968)
210 PRK10733 hflB ATP-dependent me 96.7 0.017 3.7E-07 64.7 13.2 151 199-372 186-367 (644)
211 cd01121 Sms Sms (bacterial rad 96.7 0.0062 1.4E-07 63.1 9.1 50 184-233 68-117 (372)
212 PRK11889 flhF flagellar biosyn 96.7 0.022 4.7E-07 58.7 12.4 35 198-232 241-275 (436)
213 KOG2004 Mitochondrial ATP-depe 96.7 0.0057 1.2E-07 66.1 8.4 53 174-226 410-466 (906)
214 PHA00729 NTP-binding motif con 96.7 0.01 2.2E-07 56.6 9.3 27 197-223 16-42 (226)
215 TIGR02012 tigrfam_recA protein 96.7 0.0043 9.4E-08 62.6 7.2 98 184-290 40-143 (321)
216 PF00448 SRP54: SRP54-type pro 96.7 0.0041 8.9E-08 58.5 6.5 36 198-233 1-36 (196)
217 KOG0744 AAA+-type ATPase [Post 96.6 0.0064 1.4E-07 59.8 7.8 80 198-292 177-262 (423)
218 cd00983 recA RecA is a bacter 96.6 0.0052 1.1E-07 62.0 7.5 50 184-233 40-90 (325)
219 PRK05022 anaerobic nitric oxid 96.6 0.035 7.7E-07 60.5 14.4 49 175-223 187-235 (509)
220 PF14580 LRR_9: Leucine-rich r 96.6 0.0025 5.4E-08 58.6 4.6 60 519-579 40-103 (175)
221 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0031 6.6E-08 62.0 5.5 91 198-290 69-173 (274)
222 PRK07993 DNA polymerase III su 96.6 0.13 2.8E-06 52.7 17.6 152 184-345 11-177 (334)
223 COG1618 Predicted nucleotide k 96.6 0.002 4.4E-08 57.0 3.7 34 199-232 6-40 (179)
224 PRK07667 uridine kinase; Provi 96.6 0.0042 9.2E-08 58.4 6.2 42 184-225 3-44 (193)
225 PRK09354 recA recombinase A; P 96.6 0.0063 1.4E-07 62.0 7.7 98 184-290 45-148 (349)
226 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.012 2.6E-07 52.5 8.6 101 199-321 27-130 (144)
227 PRK04328 hypothetical protein; 96.6 0.013 2.9E-07 57.4 9.7 49 185-233 10-58 (249)
228 PRK06871 DNA polymerase III su 96.6 0.059 1.3E-06 54.7 14.5 147 185-345 12-176 (325)
229 COG1066 Sms Predicted ATP-depe 96.6 0.013 2.9E-07 59.7 9.6 97 184-289 79-177 (456)
230 KOG0472 Leucine-rich repeat pr 96.6 0.00083 1.8E-08 67.6 1.1 68 512-581 449-544 (565)
231 KOG0472 Leucine-rich repeat pr 96.5 0.00071 1.5E-08 68.1 0.5 64 515-580 246-313 (565)
232 COG0572 Udk Uridine kinase [Nu 96.5 0.0057 1.2E-07 57.6 6.3 30 196-225 6-35 (218)
233 PLN00020 ribulose bisphosphate 96.5 0.0069 1.5E-07 61.5 7.1 30 197-226 147-176 (413)
234 cd01129 PulE-GspE PulE/GspE Th 96.5 0.012 2.7E-07 58.1 8.9 103 183-301 68-170 (264)
235 PF13604 AAA_30: AAA domain; P 96.5 0.011 2.3E-07 55.9 7.9 39 184-225 7-45 (196)
236 cd03223 ABCD_peroxisomal_ALDP 96.5 0.019 4.2E-07 52.5 9.5 116 199-321 28-151 (166)
237 KOG0735 AAA+-type ATPase [Post 96.4 0.0095 2.1E-07 64.4 8.1 73 198-290 431-504 (952)
238 PRK15370 E3 ubiquitin-protein 96.4 0.0058 1.3E-07 69.1 6.9 59 522-581 242-300 (754)
239 cd03214 ABC_Iron-Siderophores_ 96.4 0.026 5.6E-07 52.4 10.0 120 199-321 26-161 (180)
240 PRK12723 flagellar biosynthesi 96.4 0.037 8.1E-07 57.6 12.0 26 198-223 174-199 (388)
241 TIGR01420 pilT_fam pilus retra 96.4 0.0097 2.1E-07 61.4 7.7 110 199-320 123-232 (343)
242 PRK04301 radA DNA repair and r 96.4 0.012 2.6E-07 60.0 8.2 49 185-233 89-143 (317)
243 PRK11608 pspF phage shock prot 96.3 0.02 4.4E-07 58.5 9.8 47 175-221 6-52 (326)
244 TIGR03499 FlhF flagellar biosy 96.3 0.021 4.6E-07 57.1 9.6 27 198-224 194-220 (282)
245 PF08423 Rad51: Rad51; InterP 96.3 0.0089 1.9E-07 58.8 6.7 50 184-233 24-79 (256)
246 KOG0734 AAA+-type ATPase conta 96.3 0.014 3.1E-07 61.1 8.3 49 174-222 303-361 (752)
247 PRK08699 DNA polymerase III su 96.3 0.054 1.2E-06 55.2 12.6 66 280-345 113-182 (325)
248 KOG0730 AAA+-type ATPase [Post 96.3 0.11 2.4E-06 56.2 14.9 173 175-371 434-646 (693)
249 TIGR00416 sms DNA repair prote 96.3 0.016 3.4E-07 61.9 8.8 50 184-233 80-129 (454)
250 PF10137 TIR-like: Predicted n 96.3 0.011 2.4E-07 50.9 6.2 60 21-83 2-61 (125)
251 TIGR00708 cobA cob(I)alamin ad 96.3 0.014 3.1E-07 53.2 7.2 117 199-319 6-141 (173)
252 TIGR01817 nifA Nif-specific re 96.3 0.064 1.4E-06 59.0 13.8 49 174-222 195-243 (534)
253 KOG1514 Origin recognition com 96.3 0.038 8.3E-07 60.0 11.4 178 174-360 395-609 (767)
254 PRK15370 E3 ubiquitin-protein 96.3 0.0055 1.2E-07 69.3 5.6 62 521-583 220-281 (754)
255 KOG0727 26S proteasome regulat 96.3 0.035 7.6E-07 52.7 9.9 51 176-226 156-217 (408)
256 cd03228 ABCC_MRP_Like The MRP 96.3 0.042 9.1E-07 50.5 10.5 125 199-332 29-167 (171)
257 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.023 5E-07 56.1 9.3 36 198-233 36-71 (259)
258 PRK11823 DNA repair protein Ra 96.2 0.018 3.8E-07 61.5 9.0 50 184-233 66-115 (446)
259 PRK08233 hypothetical protein; 96.2 0.02 4.4E-07 53.0 8.3 26 198-223 3-28 (182)
260 PF13238 AAA_18: AAA domain; P 96.2 0.0041 8.9E-08 53.9 3.3 22 201-222 1-22 (129)
261 PF01583 APS_kinase: Adenylyls 96.2 0.0069 1.5E-07 54.3 4.6 35 199-233 3-37 (156)
262 cd03247 ABCC_cytochrome_bd The 96.2 0.047 1E-06 50.5 10.4 113 199-322 29-161 (178)
263 TIGR02974 phageshock_pspF psp 96.2 0.03 6.4E-07 57.3 9.8 46 177-222 1-46 (329)
264 KOG0733 Nuclear AAA ATPase (VC 96.1 0.022 4.9E-07 60.6 8.9 124 198-345 545-689 (802)
265 PRK15429 formate hydrogenlyase 96.1 0.065 1.4E-06 60.8 13.5 48 175-222 376-423 (686)
266 COG0468 RecA RecA/RadA recombi 96.1 0.027 5.8E-07 55.6 9.0 48 186-233 48-95 (279)
267 PLN03187 meiotic recombination 96.1 0.016 3.4E-07 59.3 7.6 50 184-233 112-167 (344)
268 PRK05986 cob(I)alamin adenolsy 96.1 0.016 3.5E-07 53.6 7.0 118 198-319 22-159 (191)
269 PF00485 PRK: Phosphoribulokin 96.1 0.0049 1.1E-07 58.0 3.7 26 200-225 1-26 (194)
270 PRK15455 PrkA family serine pr 96.1 0.0058 1.2E-07 65.6 4.5 49 175-223 76-128 (644)
271 cd00544 CobU Adenosylcobinamid 96.1 0.052 1.1E-06 49.8 10.2 79 201-289 2-82 (169)
272 cd01125 repA Hexameric Replica 96.1 0.069 1.5E-06 52.1 11.8 24 200-223 3-26 (239)
273 PF07726 AAA_3: ATPase family 96.1 0.0039 8.4E-08 53.5 2.6 30 201-230 2-31 (131)
274 PF00560 LRR_1: Leucine Rich R 96.1 0.0021 4.4E-08 37.1 0.6 19 543-561 1-19 (22)
275 cd02027 APSK Adenosine 5'-phos 96.1 0.035 7.6E-07 49.8 8.9 24 200-223 1-24 (149)
276 COG4088 Predicted nucleotide k 96.1 0.022 4.7E-07 52.7 7.3 27 199-225 2-28 (261)
277 PRK05800 cobU adenosylcobinami 96.1 0.051 1.1E-06 49.9 10.0 80 200-289 3-85 (170)
278 PRK00771 signal recognition pa 96.1 0.052 1.1E-06 57.5 11.3 29 197-225 94-122 (437)
279 PF08433 KTI12: Chromatin asso 96.1 0.016 3.5E-07 57.3 7.1 26 199-224 2-27 (270)
280 PF06068 TIP49: TIP49 C-termin 96.0 0.013 2.8E-07 59.3 6.3 70 161-230 10-82 (398)
281 TIGR02858 spore_III_AA stage I 96.0 0.036 7.8E-07 54.8 9.4 113 198-320 111-231 (270)
282 PLN03150 hypothetical protein; 96.0 0.0046 9.9E-08 69.1 3.3 60 522-582 419-485 (623)
283 cd01122 GP4d_helicase GP4d_hel 96.0 0.063 1.4E-06 53.4 11.3 53 198-256 30-83 (271)
284 PRK08533 flagellar accessory p 96.0 0.028 6E-07 54.4 8.4 36 198-233 24-59 (230)
285 COG4608 AppF ABC-type oligopep 96.0 0.03 6.4E-07 54.4 8.3 123 198-323 39-175 (268)
286 cd03238 ABC_UvrA The excision 96.0 0.032 7E-07 51.5 8.3 22 199-220 22-43 (176)
287 PRK14974 cell division protein 96.0 0.098 2.1E-06 53.4 12.5 29 197-225 139-167 (336)
288 COG0563 Adk Adenylate kinase a 96.0 0.022 4.8E-07 52.6 7.2 23 200-222 2-24 (178)
289 cd01130 VirB11-like_ATPase Typ 96.0 0.014 3E-07 54.6 5.9 94 199-299 26-119 (186)
290 COG1224 TIP49 DNA helicase TIP 96.0 0.016 3.5E-07 57.9 6.4 70 158-227 22-94 (450)
291 COG0464 SpoVK ATPases of the A 95.9 0.04 8.8E-07 60.0 10.3 147 175-345 242-420 (494)
292 PRK15386 type III secretion pr 95.9 0.0074 1.6E-07 62.5 4.2 57 522-583 73-134 (426)
293 cd01124 KaiC KaiC is a circadi 95.9 0.028 6E-07 52.4 7.8 33 201-233 2-34 (187)
294 TIGR02236 recomb_radA DNA repa 95.9 0.031 6.7E-07 56.9 8.7 49 185-233 82-136 (310)
295 TIGR02238 recomb_DMC1 meiotic 95.9 0.023 5E-07 57.6 7.5 50 184-233 82-137 (313)
296 KOG0618 Serine/threonine phosp 95.9 0.0016 3.5E-08 72.2 -0.9 70 511-581 58-131 (1081)
297 cd03246 ABCC_Protease_Secretio 95.9 0.053 1.2E-06 49.9 9.2 118 199-322 29-160 (173)
298 PRK12726 flagellar biosynthesi 95.9 0.089 1.9E-06 54.1 11.4 37 197-233 205-241 (407)
299 PRK05703 flhF flagellar biosyn 95.9 0.096 2.1E-06 55.5 12.2 36 198-233 221-258 (424)
300 KOG0618 Serine/threonine phosp 95.8 0.0028 6.2E-08 70.3 0.7 60 523-583 47-110 (1081)
301 PRK09270 nucleoside triphospha 95.8 0.013 2.8E-07 56.8 5.3 31 195-225 30-60 (229)
302 TIGR02239 recomb_RAD51 DNA rep 95.8 0.04 8.6E-07 56.0 9.0 38 184-221 82-119 (316)
303 PRK14722 flhF flagellar biosyn 95.8 0.084 1.8E-06 54.5 11.4 35 198-232 137-173 (374)
304 PRK03839 putative kinase; Prov 95.8 0.0072 1.6E-07 56.1 3.3 24 200-223 2-25 (180)
305 cd00984 DnaB_C DnaB helicase C 95.8 0.078 1.7E-06 51.7 10.8 52 197-254 12-64 (242)
306 TIGR00064 ftsY signal recognit 95.8 0.087 1.9E-06 52.3 11.2 37 197-233 71-107 (272)
307 PRK00889 adenylylsulfate kinas 95.8 0.023 5.1E-07 52.4 6.7 27 198-224 4-30 (175)
308 PTZ00301 uridine kinase; Provi 95.8 0.0074 1.6E-07 57.4 3.3 28 198-225 3-30 (210)
309 cd03216 ABC_Carb_Monos_I This 95.8 0.024 5.2E-07 51.7 6.6 115 199-321 27-145 (163)
310 KOG1969 DNA replication checkp 95.8 0.03 6.6E-07 60.9 8.1 72 197-291 325-398 (877)
311 PRK05480 uridine/cytidine kina 95.7 0.0094 2E-07 56.8 3.7 26 197-222 5-30 (209)
312 PRK00625 shikimate kinase; Pro 95.7 0.0084 1.8E-07 55.2 3.2 24 200-223 2-25 (173)
313 TIGR00150 HI0065_YjeE ATPase, 95.7 0.015 3.3E-07 50.7 4.6 41 183-223 7-47 (133)
314 cd03115 SRP The signal recogni 95.7 0.084 1.8E-06 48.5 10.0 26 200-225 2-27 (173)
315 cd02019 NK Nucleoside/nucleoti 95.7 0.0086 1.9E-07 45.9 2.7 23 200-222 1-23 (69)
316 cd03230 ABC_DR_subfamily_A Thi 95.7 0.051 1.1E-06 50.1 8.4 115 198-322 26-159 (173)
317 TIGR02655 circ_KaiC circadian 95.7 0.03 6.4E-07 60.7 7.8 51 183-233 248-298 (484)
318 cd03222 ABC_RNaseL_inhibitor T 95.7 0.037 8.1E-07 51.1 7.4 103 199-322 26-136 (177)
319 PRK04132 replication factor C 95.7 0.4 8.6E-06 54.8 16.8 120 206-345 574-699 (846)
320 KOG1970 Checkpoint RAD17-RFC c 95.7 0.049 1.1E-06 57.6 8.8 50 181-232 88-142 (634)
321 PF07728 AAA_5: AAA domain (dy 95.7 0.0097 2.1E-07 52.6 3.3 22 201-222 2-23 (139)
322 CHL00206 ycf2 Ycf2; Provisiona 95.7 0.17 3.8E-06 61.3 14.2 26 197-222 1629-1654(2281)
323 COG0467 RAD55 RecA-superfamily 95.6 0.028 6E-07 55.6 6.8 47 187-233 12-58 (260)
324 PTZ00494 tuzin-like protein; P 95.6 3.5 7.5E-05 43.2 21.5 187 174-371 370-571 (664)
325 PRK05973 replicative DNA helic 95.6 0.056 1.2E-06 52.2 8.6 36 198-233 64-99 (237)
326 PF00910 RNA_helicase: RNA hel 95.6 0.0067 1.5E-07 51.1 2.0 25 201-225 1-25 (107)
327 PRK10867 signal recognition pa 95.6 0.074 1.6E-06 56.2 10.2 29 197-225 99-127 (433)
328 cd03233 ABC_PDR_domain1 The pl 95.6 0.089 1.9E-06 49.8 9.9 26 198-223 33-58 (202)
329 KOG0532 Leucine-rich repeat (L 95.6 0.0026 5.6E-08 67.0 -0.8 70 510-581 178-251 (722)
330 PRK10923 glnG nitrogen regulat 95.6 0.3 6.6E-06 52.7 15.3 48 175-222 138-185 (469)
331 TIGR03574 selen_PSTK L-seryl-t 95.6 0.024 5.2E-07 55.7 6.1 25 200-224 1-25 (249)
332 PRK00131 aroK shikimate kinase 95.6 0.01 2.2E-07 54.5 3.3 26 198-223 4-29 (175)
333 cd03232 ABC_PDR_domain2 The pl 95.6 0.074 1.6E-06 49.9 9.1 24 198-221 33-56 (192)
334 PRK04040 adenylate kinase; Pro 95.6 0.013 2.9E-07 54.7 4.0 25 199-223 3-27 (188)
335 PF00158 Sigma54_activat: Sigm 95.6 0.041 8.8E-07 50.4 7.1 45 177-221 1-45 (168)
336 KOG1051 Chaperone HSP104 and r 95.5 0.12 2.7E-06 58.6 12.1 104 174-291 561-671 (898)
337 PF03308 ArgK: ArgK protein; 95.5 0.032 6.9E-07 53.9 6.5 42 184-225 15-56 (266)
338 cd02021 GntK Gluconate kinase 95.5 0.093 2E-06 46.9 9.4 23 200-222 1-23 (150)
339 PHA02774 E1; Provisional 95.5 0.046 1E-06 58.8 8.2 41 182-223 419-459 (613)
340 PF07724 AAA_2: AAA domain (Cd 95.5 0.01 2.2E-07 54.6 2.9 36 198-233 3-39 (171)
341 PRK10820 DNA-binding transcrip 95.5 0.052 1.1E-06 59.3 8.9 47 175-221 204-250 (520)
342 PF00437 T2SE: Type II/IV secr 95.5 0.035 7.6E-07 55.2 7.0 118 182-319 111-233 (270)
343 PF13481 AAA_25: AAA domain; P 95.5 0.11 2.4E-06 48.5 10.1 25 199-223 33-57 (193)
344 PF13504 LRR_7: Leucine rich r 95.5 0.0085 1.9E-07 32.1 1.3 16 565-580 2-17 (17)
345 cd02025 PanK Pantothenate kina 95.5 0.056 1.2E-06 51.9 8.0 24 200-223 1-24 (220)
346 PRK06547 hypothetical protein; 95.4 0.015 3.2E-07 53.5 3.8 27 196-222 13-39 (172)
347 TIGR00390 hslU ATP-dependent p 95.4 0.039 8.4E-07 57.3 7.2 53 174-226 11-75 (441)
348 TIGR00235 udk uridine kinase. 95.4 0.014 3E-07 55.6 3.7 27 197-223 5-31 (207)
349 PRK09302 circadian clock prote 95.4 0.062 1.4E-06 58.7 9.2 50 184-233 17-67 (509)
350 PRK13947 shikimate kinase; Pro 95.4 0.012 2.7E-07 53.9 3.2 26 200-225 3-28 (171)
351 KOG0736 Peroxisome assembly fa 95.3 0.099 2.1E-06 57.4 10.0 92 177-291 674-775 (953)
352 PF03969 AFG1_ATPase: AFG1-lik 95.3 0.042 9.1E-07 56.7 7.1 101 197-316 61-166 (362)
353 PRK13539 cytochrome c biogenes 95.3 0.13 2.9E-06 48.8 10.2 24 198-221 28-51 (207)
354 KOG0729 26S proteasome regulat 95.3 0.097 2.1E-06 50.2 8.8 49 176-224 178-237 (435)
355 COG1875 NYN ribonuclease and A 95.3 0.099 2.1E-06 52.7 9.2 39 179-219 228-266 (436)
356 cd03217 ABC_FeS_Assembly ABC-t 95.3 0.058 1.2E-06 51.0 7.5 24 198-221 26-49 (200)
357 TIGR02788 VirB11 P-type DNA tr 95.3 0.041 8.8E-07 55.9 6.8 110 198-319 144-254 (308)
358 cd00227 CPT Chloramphenicol (C 95.3 0.015 3.3E-07 53.7 3.4 25 199-223 3-27 (175)
359 PF00560 LRR_1: Leucine Rich R 95.3 0.0096 2.1E-07 34.3 1.2 19 565-583 1-19 (22)
360 KOG0532 Leucine-rich repeat (L 95.3 0.0047 1E-07 65.1 -0.1 64 515-580 115-182 (722)
361 KOG0058 Peptide exporter, ABC 95.3 0.013 2.8E-07 63.9 3.2 22 199-220 495-516 (716)
362 TIGR01360 aden_kin_iso1 adenyl 95.2 0.015 3.3E-07 54.2 3.3 25 198-222 3-27 (188)
363 cd02028 UMPK_like Uridine mono 95.2 0.019 4.2E-07 53.2 3.9 26 200-225 1-26 (179)
364 cd03229 ABC_Class3 This class 95.2 0.057 1.2E-06 50.0 7.1 24 199-222 27-50 (178)
365 COG5635 Predicted NTPase (NACH 95.2 0.13 2.9E-06 59.4 11.6 112 199-319 223-349 (824)
366 KOG0728 26S proteasome regulat 95.2 0.3 6.5E-06 46.6 11.6 140 179-345 151-328 (404)
367 PTZ00035 Rad51 protein; Provis 95.2 0.089 1.9E-06 53.9 9.1 39 184-222 104-142 (337)
368 COG1136 SalX ABC-type antimicr 95.2 0.11 2.4E-06 49.5 9.0 58 267-325 147-210 (226)
369 KOG3665 ZYG-1-like serine/thre 95.2 0.007 1.5E-07 67.8 1.0 81 491-576 147-232 (699)
370 KOG0726 26S proteasome regulat 95.2 0.088 1.9E-06 51.2 8.2 51 176-226 186-247 (440)
371 cd03237 ABC_RNaseL_inhibitor_d 95.2 0.14 3E-06 50.2 9.9 24 199-222 26-49 (246)
372 cd01858 NGP_1 NGP-1. Autoanti 95.2 0.17 3.7E-06 45.6 9.9 43 178-220 81-124 (157)
373 PRK05201 hslU ATP-dependent pr 95.2 0.028 6E-07 58.4 5.1 52 174-225 14-77 (443)
374 PLN03186 DNA repair protein RA 95.1 0.057 1.2E-06 55.3 7.3 50 184-233 109-164 (342)
375 KOG0927 Predicted transporter 95.1 0.053 1.1E-06 57.2 7.0 52 272-324 231-285 (614)
376 COG0714 MoxR-like ATPases [Gen 95.1 0.024 5.3E-07 58.1 4.6 49 175-227 24-72 (329)
377 PRK05439 pantothenate kinase; 95.1 0.12 2.5E-06 52.1 9.3 29 196-224 84-112 (311)
378 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.015 3.2E-07 54.1 2.8 23 200-222 1-23 (183)
379 PRK12724 flagellar biosynthesi 95.1 0.11 2.3E-06 54.4 9.2 25 198-222 223-247 (432)
380 COG0465 HflB ATP-dependent Zn 95.1 0.2 4.3E-06 54.5 11.5 52 174-225 149-210 (596)
381 PRK10416 signal recognition pa 95.1 0.17 3.7E-06 51.4 10.5 29 197-225 113-141 (318)
382 COG1223 Predicted ATPase (AAA+ 95.0 0.18 3.9E-06 48.5 9.6 155 174-352 120-305 (368)
383 COG2884 FtsE Predicted ATPase 95.0 0.17 3.6E-06 46.5 9.0 57 267-325 142-204 (223)
384 COG1102 Cmk Cytidylate kinase 95.0 0.019 4E-07 51.1 2.9 26 200-225 2-27 (179)
385 TIGR01313 therm_gnt_kin carboh 95.0 0.13 2.8E-06 46.8 8.7 22 201-222 1-22 (163)
386 PRK15453 phosphoribulokinase; 95.0 0.11 2.4E-06 51.1 8.6 28 197-224 4-31 (290)
387 PTZ00088 adenylate kinase 1; P 95.0 0.048 1E-06 52.6 6.1 23 200-222 8-30 (229)
388 PRK13543 cytochrome c biogenes 95.0 0.21 4.5E-06 47.7 10.5 23 199-221 38-60 (214)
389 PRK06217 hypothetical protein; 95.0 0.018 4E-07 53.6 3.1 24 200-223 3-26 (183)
390 cd02020 CMPK Cytidine monophos 95.0 0.018 3.8E-07 51.2 2.9 24 200-223 1-24 (147)
391 KOG0739 AAA+-type ATPase [Post 95.0 0.12 2.5E-06 50.6 8.4 92 175-290 133-235 (439)
392 PRK12727 flagellar biosynthesi 95.0 0.1 2.2E-06 55.9 8.9 27 198-224 350-376 (559)
393 PRK15115 response regulator Gl 95.0 2.1 4.5E-05 45.9 19.3 48 175-222 134-181 (444)
394 cd03213 ABCG_EPDR ABCG transpo 95.0 0.14 2.9E-06 48.2 9.0 25 198-222 35-59 (194)
395 PRK11388 DNA-binding transcrip 95.0 0.1 2.3E-06 58.7 9.5 48 175-222 325-372 (638)
396 PRK03846 adenylylsulfate kinas 95.0 0.032 7E-07 52.7 4.7 36 197-232 23-58 (198)
397 cd03250 ABCC_MRP_domain1 Domai 95.0 0.34 7.3E-06 45.9 11.7 24 198-221 31-54 (204)
398 TIGR02524 dot_icm_DotB Dot/Icm 95.0 0.033 7.2E-07 57.5 5.1 95 198-301 134-233 (358)
399 TIGR01425 SRP54_euk signal rec 94.9 0.2 4.4E-06 52.7 10.8 29 197-225 99-127 (429)
400 PF00406 ADK: Adenylate kinase 94.9 0.091 2E-06 47.1 7.3 88 203-300 1-94 (151)
401 cd03215 ABC_Carb_Monos_II This 94.9 0.13 2.8E-06 47.8 8.5 24 199-222 27-50 (182)
402 cd02024 NRK1 Nicotinamide ribo 94.9 0.018 3.9E-07 53.6 2.7 23 200-222 1-23 (187)
403 TIGR02533 type_II_gspE general 94.9 0.11 2.4E-06 56.1 9.0 116 184-318 231-346 (486)
404 PRK13949 shikimate kinase; Pro 94.9 0.022 4.7E-07 52.3 3.2 24 200-223 3-26 (169)
405 cd03369 ABCC_NFT1 Domain 2 of 94.9 0.24 5.1E-06 47.0 10.4 23 199-221 35-57 (207)
406 cd00464 SK Shikimate kinase (S 94.9 0.022 4.8E-07 51.1 3.2 23 201-223 2-24 (154)
407 PRK13765 ATP-dependent proteas 94.9 0.046 1E-06 60.6 6.2 72 174-254 30-102 (637)
408 PRK08356 hypothetical protein; 94.9 0.086 1.9E-06 49.6 7.3 21 199-219 6-26 (195)
409 KOG0731 AAA+-type ATPase conta 94.9 0.33 7.2E-06 54.1 12.6 148 174-345 310-492 (774)
410 TIGR00959 ffh signal recogniti 94.9 0.21 4.5E-06 52.8 10.8 27 197-223 98-124 (428)
411 cd02023 UMPK Uridine monophosp 94.9 0.018 3.8E-07 54.4 2.6 23 200-222 1-23 (198)
412 TIGR02782 TrbB_P P-type conjug 94.9 0.1 2.2E-06 52.7 8.1 87 199-298 133-222 (299)
413 COG1428 Deoxynucleoside kinase 94.8 0.023 4.9E-07 53.0 3.1 26 198-223 4-29 (216)
414 cd03253 ABCC_ATM1_transporter 94.8 0.17 3.7E-06 49.1 9.5 23 199-221 28-50 (236)
415 PHA02244 ATPase-like protein 94.8 0.029 6.3E-07 57.3 4.1 47 174-224 95-145 (383)
416 PF13086 AAA_11: AAA domain; P 94.8 0.053 1.1E-06 52.2 5.9 36 183-222 6-41 (236)
417 TIGR01277 thiQ thiamine ABC tr 94.8 0.16 3.6E-06 48.4 9.1 24 198-221 24-47 (213)
418 PF12775 AAA_7: P-loop contain 94.8 0.017 3.6E-07 57.4 2.3 24 199-222 34-57 (272)
419 KOG4194 Membrane glycoprotein 94.8 0.042 9.2E-07 58.3 5.2 85 491-581 124-214 (873)
420 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.05 1.1E-06 52.6 5.5 49 185-233 7-55 (229)
421 PRK07276 DNA polymerase III su 94.7 3.5 7.5E-05 41.2 18.5 79 279-358 103-187 (290)
422 cd03278 ABC_SMC_barmotin Barmo 94.7 0.15 3.2E-06 48.1 8.5 21 200-220 24-44 (197)
423 PRK13948 shikimate kinase; Pro 94.7 0.024 5.2E-07 52.6 3.1 27 198-224 10-36 (182)
424 PRK09519 recA DNA recombinatio 94.7 0.072 1.6E-06 59.9 7.2 98 184-290 45-148 (790)
425 PRK07132 DNA polymerase III su 94.7 1.2 2.7E-05 44.7 15.4 154 184-358 5-174 (299)
426 PRK14259 phosphate ABC transpo 94.7 0.26 5.7E-06 48.9 10.6 23 199-221 40-62 (269)
427 COG2274 SunT ABC-type bacterio 94.7 0.27 6E-06 55.3 11.7 24 198-221 499-522 (709)
428 PRK13946 shikimate kinase; Pro 94.7 0.025 5.5E-07 52.7 3.1 27 198-224 10-36 (184)
429 COG4618 ArpD ABC-type protease 94.7 0.095 2.1E-06 55.0 7.4 22 199-220 363-384 (580)
430 cd03289 ABCC_CFTR2 The CFTR su 94.7 0.23 4.9E-06 49.5 10.1 24 199-222 31-54 (275)
431 TIGR02322 phosphon_PhnN phosph 94.7 0.026 5.6E-07 52.3 3.1 25 199-223 2-26 (179)
432 PRK05342 clpX ATP-dependent pr 94.7 0.039 8.4E-07 58.1 4.8 53 174-226 70-136 (412)
433 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.095 2.1E-06 47.3 6.8 116 199-323 26-145 (157)
434 TIGR00764 lon_rel lon-related 94.7 0.077 1.7E-06 58.9 7.3 56 174-233 17-73 (608)
435 COG1703 ArgK Putative periplas 94.6 0.056 1.2E-06 53.0 5.3 48 185-232 38-85 (323)
436 PF00154 RecA: recA bacterial 94.6 0.1 2.2E-06 52.7 7.4 98 184-291 38-142 (322)
437 TIGR00450 mnmE_trmE_thdF tRNA 94.6 0.16 3.4E-06 54.2 9.2 23 199-221 204-226 (442)
438 TIGR01069 mutS2 MutS2 family p 94.6 0.05 1.1E-06 61.9 5.8 169 198-375 322-522 (771)
439 PRK10463 hydrogenase nickel in 94.6 0.066 1.4E-06 53.1 5.8 32 196-227 102-133 (290)
440 COG2401 ABC-type ATPase fused 94.6 0.071 1.5E-06 54.5 6.0 24 199-222 410-433 (593)
441 COG0529 CysC Adenylylsulfate k 94.6 0.046 1E-06 49.4 4.2 36 197-232 22-57 (197)
442 PF03266 NTPase_1: NTPase; In 94.5 0.038 8.3E-07 50.6 3.9 24 201-224 2-25 (168)
443 COG1121 ZnuC ABC-type Mn/Zn tr 94.5 0.1 2.2E-06 50.7 6.9 51 270-322 147-203 (254)
444 PF06745 KaiC: KaiC; InterPro 94.5 0.038 8.2E-07 53.4 4.0 48 186-233 7-55 (226)
445 TIGR03575 selen_PSTK_euk L-ser 94.5 0.18 4E-06 51.4 9.0 23 201-223 2-24 (340)
446 TIGR02525 plasmid_TraJ plasmid 94.5 0.076 1.6E-06 55.0 6.4 108 199-317 150-259 (372)
447 KOG2739 Leucine-rich acidic nu 94.5 0.024 5.3E-07 54.3 2.5 63 515-579 59-131 (260)
448 cd00071 GMPK Guanosine monopho 94.5 0.028 6E-07 49.7 2.7 26 200-225 1-26 (137)
449 PF13504 LRR_7: Leucine rich r 94.5 0.024 5.2E-07 30.3 1.4 16 543-558 2-17 (17)
450 KOG4194 Membrane glycoprotein 94.5 0.0095 2.1E-07 63.0 -0.3 87 490-582 267-359 (873)
451 PRK09302 circadian clock prote 94.5 0.18 3.9E-06 55.1 9.6 50 184-233 259-308 (509)
452 PRK14530 adenylate kinase; Pro 94.4 0.032 7E-07 53.4 3.2 24 199-222 4-27 (215)
453 PF03205 MobB: Molybdopterin g 94.4 0.052 1.1E-06 48.1 4.2 35 199-233 1-36 (140)
454 COG0488 Uup ATPase components 94.4 0.13 2.7E-06 56.0 7.9 128 201-334 351-511 (530)
455 PRK04182 cytidylate kinase; Pr 94.4 0.036 7.8E-07 51.2 3.4 24 200-223 2-25 (180)
456 cd02029 PRK_like Phosphoribulo 94.3 0.14 3.1E-06 50.0 7.5 26 200-225 1-26 (277)
457 COG0003 ArsA Predicted ATPase 94.3 0.063 1.4E-06 54.3 5.2 48 198-249 2-49 (322)
458 COG0703 AroK Shikimate kinase 94.3 0.037 7.9E-07 50.3 3.2 28 199-226 3-30 (172)
459 COG4240 Predicted kinase [Gene 94.3 0.21 4.5E-06 47.1 8.0 81 197-281 49-134 (300)
460 TIGR02868 CydC thiol reductant 94.3 0.17 3.8E-06 55.5 9.2 24 198-221 361-384 (529)
461 PRK05537 bifunctional sulfate 94.3 0.052 1.1E-06 59.6 4.9 51 174-224 368-418 (568)
462 cd01857 HSR1_MMR1 HSR1/MMR1. 94.3 0.45 9.7E-06 42.1 10.2 52 63-117 2-53 (141)
463 PF00625 Guanylate_kin: Guanyl 94.3 0.044 9.5E-07 51.0 3.8 34 199-232 3-36 (183)
464 KOG1259 Nischarin, modulator o 94.3 0.018 3.9E-07 56.1 1.2 58 520-578 306-366 (490)
465 KOG2170 ATPase of the AAA+ sup 94.3 0.13 2.7E-06 50.6 6.8 48 175-222 82-134 (344)
466 PRK10751 molybdopterin-guanine 94.3 0.044 9.6E-07 50.2 3.6 28 197-224 5-32 (173)
467 PRK12339 2-phosphoglycerate ki 94.3 0.04 8.7E-07 51.9 3.5 25 198-222 3-27 (197)
468 TIGR03600 phage_DnaB phage rep 94.3 0.29 6.2E-06 52.1 10.4 71 179-256 176-247 (421)
469 PRK09580 sufC cysteine desulfu 94.3 0.23 4.9E-06 48.6 9.0 23 199-221 28-50 (248)
470 PRK13975 thymidylate kinase; P 94.3 0.041 8.9E-07 51.7 3.6 26 199-224 3-28 (196)
471 COG1936 Predicted nucleotide k 94.3 0.035 7.5E-07 50.0 2.8 20 200-219 2-21 (180)
472 KOG4237 Extracellular matrix p 94.2 0.011 2.4E-07 59.7 -0.4 64 515-579 268-337 (498)
473 PRK15387 E3 ubiquitin-protein 94.2 0.026 5.6E-07 63.8 2.5 58 520-578 401-459 (788)
474 PRK03731 aroL shikimate kinase 94.2 0.037 8.1E-07 50.8 3.1 24 200-223 4-27 (171)
475 COG3640 CooC CO dehydrogenase 94.2 0.072 1.6E-06 50.4 4.9 26 200-225 2-27 (255)
476 smart00534 MUTSac ATPase domai 94.2 0.024 5.3E-07 52.9 1.8 21 200-220 1-21 (185)
477 KOG3347 Predicted nucleotide k 94.2 0.037 8.1E-07 48.4 2.8 25 198-222 7-31 (176)
478 PRK05057 aroK shikimate kinase 94.2 0.038 8.2E-07 50.9 3.1 25 199-223 5-29 (172)
479 PF03215 Rad17: Rad17 cell cyc 94.2 0.066 1.4E-06 58.0 5.3 56 176-233 20-78 (519)
480 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.041 8.8E-07 52.6 3.3 23 198-220 29-51 (213)
481 KOG0743 AAA+-type ATPase [Post 94.2 0.38 8.3E-06 50.0 10.4 25 198-222 235-259 (457)
482 PRK10436 hypothetical protein; 94.1 0.25 5.4E-06 52.8 9.5 108 178-301 200-308 (462)
483 cd03244 ABCC_MRP_domain2 Domai 94.1 0.62 1.3E-05 44.6 11.6 23 199-221 31-53 (221)
484 TIGR03263 guanyl_kin guanylate 94.1 0.035 7.6E-07 51.4 2.8 24 199-222 2-25 (180)
485 TIGR00455 apsK adenylylsulfate 94.1 0.21 4.6E-06 46.4 8.1 26 198-223 18-43 (184)
486 PLN02318 phosphoribulokinase/u 94.1 0.06 1.3E-06 58.3 4.8 33 190-222 57-89 (656)
487 TIGR00554 panK_bact pantothena 94.1 0.16 3.4E-06 50.8 7.5 27 197-223 61-87 (290)
488 PRK13657 cyclic beta-1,2-gluca 94.1 0.19 4.1E-06 56.1 9.0 23 199-221 362-384 (588)
489 cd03240 ABC_Rad50 The catalyti 94.1 0.25 5.3E-06 46.9 8.5 20 200-219 24-43 (204)
490 PF07693 KAP_NTPase: KAP famil 94.1 0.15 3.2E-06 52.1 7.6 45 181-225 2-47 (325)
491 PRK15387 E3 ubiquitin-protein 94.1 0.063 1.4E-06 60.8 5.1 62 520-582 241-320 (788)
492 COG1419 FlhF Flagellar GTP-bin 94.1 0.29 6.2E-06 50.5 9.4 85 198-289 203-290 (407)
493 PF13479 AAA_24: AAA domain 94.1 0.13 2.9E-06 49.1 6.7 27 199-233 4-30 (213)
494 PRK14738 gmk guanylate kinase; 94.1 0.042 9.2E-07 52.2 3.3 27 195-221 10-36 (206)
495 PRK14249 phosphate ABC transpo 94.1 0.37 8.1E-06 47.2 10.1 24 199-222 31-54 (251)
496 PRK09435 membrane ATPase/prote 94.1 0.11 2.3E-06 53.0 6.3 40 186-225 44-83 (332)
497 COG3854 SpoIIIAA ncharacterize 94.1 0.19 4E-06 47.5 7.2 109 199-318 138-253 (308)
498 TIGR00382 clpX endopeptidase C 94.1 0.064 1.4E-06 56.2 4.7 53 174-226 76-144 (413)
499 PF03796 DnaB_C: DnaB-like hel 94.1 0.28 6.1E-06 48.4 9.2 67 185-258 7-74 (259)
500 PRK00409 recombination and DNA 94.0 0.051 1.1E-06 62.1 4.3 171 197-375 326-527 (782)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.3e-92 Score=823.26 Aligned_cols=558 Identities=41% Similarity=0.739 Sum_probs=497.4
Q ss_pred CCCceeeEEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhHHH
Q 035646 14 LPHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCLDE 93 (584)
Q Consensus 14 ~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~E 93 (584)
++.|+|||||||||+|+|++|++||+++|.++||.+|+|+ ++++|+.|.+++.+||++|+++|||||++|++|+||++|
T Consensus 8 ~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~e 86 (1153)
T PLN03210 8 SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNE 86 (1153)
T ss_pred CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHH
Confidence 3578999999999999999999999999999999999988 799999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEeeeeccCcchhhcccchHHHHHHhHHHhhhhhHHHHHHHHHHHHHHhhcccCcccC-CCcccc
Q 035646 94 LVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYEEVFSENIEKVQKWRDALREVANISGWELKD-MNESEF 172 (584)
Q Consensus 94 l~~~~~~~~~~~~~~v~Pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~ 172 (584)
|++|++|++..+ +.|+||||+|+|++||+|+|.|+++|.+++.... .+++++|++||+++++++||++.. .+|+++
T Consensus 87 l~~i~~~~~~~~-~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~--~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~ 163 (1153)
T PLN03210 87 LLEIVRCKEELG-QLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT--EDEKIQWKQALTDVANILGYHSQNWPNEAKM 163 (1153)
T ss_pred HHHHHHhhhhcC-ceEEEEEecccHHHHhhccchHHHHHHHHhcccc--hhHHHHHHHHHHHHhCcCceecCCCCCHHHH
Confidence 999999999888 8999999999999999999999999999877543 367999999999999999998875 556665
Q ss_pred c------------------ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEe
Q 035646 173 I------------------LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLAN 234 (584)
Q Consensus 173 i------------------~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~ 234 (584)
| .+.+|||+.++++|..+|..+.+++++|+||||||+||||||+++|+++..+|+..+|+..
T Consensus 164 i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 164 IEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 5 4689999999999999998777789999999999999999999999999999999988853
Q ss_pred c--hhh---cc------cCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCC
Q 035646 235 V--REI---SE------EGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKRE 303 (584)
Q Consensus 235 ~--~~~---s~------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~ 303 (584)
. ... .. ......++.+++..++......... ...+++.++++|+||||||||+.++++.+.....
T Consensus 244 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~ 319 (1153)
T PLN03210 244 AFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ 319 (1153)
T ss_pred cccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc
Confidence 1 100 00 0112345566666665543332222 2567888999999999999999999999998888
Q ss_pred CCCCCcEEEEEccccchhhccccceEeecCCCCHHHHHHHhc-------------------------CCchhHHHhhhhh
Q 035646 304 WFGPGSRIVITSRDKHLLMMHGVDEIYNLRELHDDKALQLFC-------------------------GLPLALKVLGSFL 358 (584)
Q Consensus 304 ~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~-------------------------G~PLal~~~~~~L 358 (584)
++++|++||||||+..++..++..++|+|+.|+.++|++||+ |+||||+++|++|
T Consensus 320 ~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L 399 (1153)
T PLN03210 320 WFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYL 399 (1153)
T ss_pred cCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 889999999999999999887788899999999999999997 9999999999999
Q ss_pred hCCCHHHHHHHHHHHhhcchhhHHHHHHHhhhCCch-hHHHHHhhhccccccCChhhHHHhhhcCCCchhhhHHHHhhcc
Q 035646 359 YGKTTKEWESALKRLKRESENEILDILKISFDGLRE-TEKKIFLDIACFYQGENRDYVTKILDYCDFDPVIGIRVLIDKS 437 (584)
Q Consensus 359 ~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~-~~k~~fl~la~fp~~~~~~~l~~~~~~~~~~~~~~l~~L~~~s 437 (584)
++++..+|+.+++++....+..+..+|+.||+.|++ .+|.||+++|||+.+.+.+.+..++..+++....+++.|+++|
T Consensus 400 ~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ks 479 (1153)
T PLN03210 400 RGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKS 479 (1153)
T ss_pred cCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcC
Confidence 999999999999999988888999999999999987 5999999999999999998888888888888888999999999
Q ss_pred ceeEecCCeEEecHHHHHHHHHHHhhhCCCCCCCceeeeecccchhccccCcccceeEEEeccCcccccccccccccccc
Q 035646 438 LIEISTDSRFWMHDLLKEICQQIVKRQSPEDPGKRSRLWKEADIHHMLTRNTGTKTVEVIKLENFTEEAEMHFSTSSNSF 517 (584)
Q Consensus 438 Li~~~~~~~~~mH~lv~~~a~~i~~~~~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 517 (584)
||+.. .+++.|||++|+||++++++++ ..|+++.|+|.++++++++..++++.+++++.++..... ...+.. ..|
T Consensus 480 Li~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~-~~~i~~--~aF 554 (1153)
T PLN03210 480 LIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID-ELHIHE--NAF 554 (1153)
T ss_pred CEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc-eeeecH--HHH
Confidence 99987 5789999999999999999887 689999999999999999999999999999999887443 455555 889
Q ss_pred cccccccEEEecCc----------cCCCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccCCCCC
Q 035646 518 LKMINLRMLLIRNL----------QLPEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMWCGIK 584 (584)
Q Consensus 518 ~~~~~LrvL~L~~~----------~lp~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp~~~~ 584 (584)
..|++||+|++.+. .+|+++..++++||+|+|.+++++++|..+.+.+|++|+|++|++++||++++
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc
Confidence 99999999999543 48899999998999999999999999999999999999999999999999863
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-55 Score=492.20 Aligned_cols=389 Identities=26% Similarity=0.339 Sum_probs=331.3
Q ss_pred ccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh---hcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 178 VGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL---TSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 178 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
||.+..++.+.+.|...+. .+++|+||||+||||||++++++ ++.+|+.++|+. +|+.+....++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999985543 89999999999999999999994 678999999999 89999999999999998
Q ss_pred HhCCCCCC-CcChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhc-cccceEeec
Q 035646 255 LLKLPNNG-IWNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMM-HGVDEIYNL 332 (584)
Q Consensus 255 l~~~~~~~-~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~l 332 (584)
+....... ..+..+....+.+.|+++|+||||||||+..+|+.+..+++...+||+|++|||+..|+.. ++....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 76533322 2334678888999999999999999999999999999999988889999999999999998 888899999
Q ss_pred CCCCHHHHHHHhc--------------------------CCchhHHHhhhhhhCC-CHHHHHHHHHHHhhc-------ch
Q 035646 333 RELHDDKALQLFC--------------------------GLPLALKVLGSFLYGK-TTKEWESALKRLKRE-------SE 378 (584)
Q Consensus 333 ~~L~~~ea~~Lf~--------------------------G~PLal~~~~~~L~~~-~~~~w~~~l~~l~~~-------~~ 378 (584)
..|+.+|||.||+ |+|||+.++|+.|+.+ +..+|+++.+.+... ..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 9999999999998 9999999999999995 577999999988664 24
Q ss_pred hhHHHHHHHhhhCCchhHHHHHhhhccccccC--ChhhHHHhhhcCCCch------------hhhHHHHhhccceeEecC
Q 035646 379 NEILDILKISFDGLRETEKKIFLDIACFYQGE--NRDYVTKILDYCDFDP------------VIGIRVLIDKSLIEISTD 444 (584)
Q Consensus 379 ~~i~~~l~~s~~~L~~~~k~~fl~la~fp~~~--~~~~l~~~~~~~~~~~------------~~~l~~L~~~sLi~~~~~ 444 (584)
+.+..++..||+.|+++.|.||+|||.||+++ +.+.++..|+++|+.. ..++++|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 67899999999999999999999999999998 5889999999999653 568999999999998753
Q ss_pred ----CeEEecHHHHHHHHHHHhhhCCC-------------------CCCCceeeeecccchhccccCcccceeEEEeccC
Q 035646 445 ----SRFWMHDLLKEICQQIVKRQSPE-------------------DPGKRSRLWKEADIHHMLTRNTGTKTVEVIKLEN 501 (584)
Q Consensus 445 ----~~~~mH~lv~~~a~~i~~~~~~~-------------------~~~~~~rl~~~~~~~~~l~~~~~~~~~~~l~l~~ 501 (584)
..|.|||+||++|..++++.+.. .....+|.....+....+.....+.+++++.+..
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQR 554 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEee
Confidence 46999999999999999832211 1223455555554444444555566777777665
Q ss_pred cccccccccccccccccccccccEEEecCc----cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCc
Q 035646 502 FTEEAEMHFSTSSNSFLKMINLRMLLIRNL----QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRI 576 (584)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~----~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i 576 (584)
... ....++. .+|..|+.||||||++| +||.+|+.|. |||||++++|.++.||.++ +|+.|++||+.++.-
T Consensus 555 n~~-~l~~is~--~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 555 NSD-WLLEISG--EFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred cch-hhhhcCH--HHHhhCcceEEEECCCCCccCcCChHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 422 0233443 77999999999999976 6999999999 9999999999999999999 999999999998764
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=282.96 Aligned_cols=146 Identities=32% Similarity=0.479 Sum_probs=130.8
Q ss_pred CCCCCCCceeeEEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchh
Q 035646 10 VPYPLPHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTW 89 (584)
Q Consensus 10 ~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~ 89 (584)
+++++...+|||||||+|+|+|.+|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++||||||+|++|+|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcEEEeeeeccCcchhhcc-cchHHHHHHhHHHhhhhhHHHHHHHHHHHHHHhhcccCcccC--
Q 035646 90 CLDELVHILECKNTNNQQMVYPIFYDVEPAVVRKQ-TETFQEAFAQYEEVFSENIEKVQKWRDALREVANISGWELKD-- 166 (584)
Q Consensus 90 c~~El~~~~~~~~~~~~~~v~Pvf~~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-- 166 (584)
|++||++|+++. ..|+||||+|+|++||+| .|. ...+++++|+.||.+++++.|+.+..
T Consensus 98 CLdEL~~I~e~~-----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~ 159 (187)
T PLN03194 98 CLHELALIMESK-----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLK 159 (187)
T ss_pred HHHHHHHHHHcC-----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCC
Confidence 999999999863 579999999999999997 332 12367999999999999999987653
Q ss_pred CCccccc
Q 035646 167 MNESEFI 173 (584)
Q Consensus 167 ~~~~~~i 173 (584)
++++++|
T Consensus 160 ~~e~e~i 166 (187)
T PLN03194 160 GNWSEVV 166 (187)
T ss_pred CCHHHHH
Confidence 4556555
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.6e-36 Score=304.46 Aligned_cols=243 Identities=31% Similarity=0.483 Sum_probs=199.5
Q ss_pred chhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh--hcccccceEEEEechhhcccCChHHHHHHHHHHHhC
Q 035646 180 IDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL--TSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLK 257 (584)
Q Consensus 180 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~ 257 (584)
||.++++|.+.|...+++.++|+|+||||+||||||.+++++ ++.+|+.++|+. ++.......++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999976677999999999999999999999998 889999999998 56666778899999988765
Q ss_pred CCCC--CCcChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhcccc-ceEeecCC
Q 035646 258 LPNN--GIWNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMMHGV-DEIYNLRE 334 (584)
Q Consensus 258 ~~~~--~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~ 334 (584)
.... ...+.......+.+.|+++++||||||||+...|+.+...++....|++||||||+..++...+. ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5332 45667778899999999999999999999999998888777777789999999999988876654 67899999
Q ss_pred CCHHHHHHHhc--------------------------CCchhHHHhhhhhhC-CCHHHHHHHHHHHhhcc------hhhH
Q 035646 335 LHDDKALQLFC--------------------------GLPLALKVLGSFLYG-KTTKEWESALKRLKRES------ENEI 381 (584)
Q Consensus 335 L~~~ea~~Lf~--------------------------G~PLal~~~~~~L~~-~~~~~w~~~l~~l~~~~------~~~i 381 (584)
|+.+||++||. |+||||+++|++|+. .+..+|...++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998 999999999999965 36788999998876543 4779
Q ss_pred HHHHHHhhhCCchhHHHHHhhhccccccC--ChhhHHHhhhcCCCch
Q 035646 382 LDILKISFDGLRETEKKIFLDIACFYQGE--NRDYVTKILDYCDFDP 426 (584)
Q Consensus 382 ~~~l~~s~~~L~~~~k~~fl~la~fp~~~--~~~~l~~~~~~~~~~~ 426 (584)
..++..||+.|+++.|+||++||+||.+. +.+.++.+|.++|+..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999986 5899999999988764
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=3.2e-21 Score=172.46 Aligned_cols=134 Identities=36% Similarity=0.613 Sum_probs=114.7
Q ss_pred EEEcCccCcccCchHHHHHHHHhhC--CCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhHHHHHHHH
Q 035646 21 VFLSFRGEDTRKNFTDHLYSALDEK--GIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCLDELVHIL 98 (584)
Q Consensus 21 vFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~ 98 (584)
|||||++.|.+..|+.+|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|++|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444677999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-CcEEEeeeeccCcchhh-cccchHHHHHHhHHHhhhhh--HHHHHHHHHHHH
Q 035646 99 ECKNTNN-QQMVYPIFYDVEPAVVR-KQTETFQEAFAQYEEVFSEN--IEKVQKWRDALR 154 (584)
Q Consensus 99 ~~~~~~~-~~~v~Pvf~~v~p~~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 154 (584)
++....+ ...|+|+||++.+.+++ .+.+.+...+........+. ......|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998754 58999999999999999 78888888887755544443 456788887764
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.81 E-value=1.2e-19 Score=162.44 Aligned_cols=137 Identities=42% Similarity=0.661 Sum_probs=114.2
Q ss_pred eeeEEEcCcc-CcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhHHHHHH
Q 035646 18 KYDVFLSFRG-EDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCLDELVH 96 (584)
Q Consensus 18 ~~dvFis~~~-~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~ 96 (584)
.|||||||++ ++....|+.+|...|...|+.+|.|++.. |.....+|.++|++|+++|+|+||+|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 45558899999999999999999997533 33333499999999999999999999999999999999
Q ss_pred HHHHhhcCCCcEEEeeeeccCcchhhcccchHHHHHHhHHHhhhhhHHHHHHHHHHHHHHh
Q 035646 97 ILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYEEVFSENIEKVQKWRDALREVA 157 (584)
Q Consensus 97 ~~~~~~~~~~~~v~Pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (584)
+.......++.+|+||+++..|..+..+.+.+...+..+...+.+...+ ..|+..+..+.
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 9998876445899999999999889999999999988875555554322 67888877654
No 7
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.61 E-value=4.5e-16 Score=131.01 Aligned_cols=87 Identities=34% Similarity=0.583 Sum_probs=75.7
Q ss_pred EEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhHHHHHHHHHH
Q 035646 21 VFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCLDELVHILEC 100 (584)
Q Consensus 21 vFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~ 100 (584)
|||||+++| +.|+++|...|+..|+++|+|. ++.+|+.+...|.++|++|+..|+++||+|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 899999999 7899999999999999999997 999999999999999999999999999999999999999988832
Q ss_pred hhcCCCcEEEeeeec
Q 035646 101 KNTNNQQMVYPIFYD 115 (584)
Q Consensus 101 ~~~~~~~~v~Pvf~~ 115 (584)
.+ ..|+||..+
T Consensus 77 ---~~-~~iipv~~~ 87 (102)
T PF13676_consen 77 ---RG-KPIIPVRLD 87 (102)
T ss_dssp ---TS-ESEEEEECS
T ss_pred ---CC-CEEEEEEEC
Confidence 44 579999854
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=8e-13 Score=154.54 Aligned_cols=271 Identities=16% Similarity=0.195 Sum_probs=171.4
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhc-ccCChHHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREIS-EEGGLTSLQNQLL 252 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s-~~~~~~~~~~~i~ 252 (584)
...+|-|...++.|.. ....+++.|+|++|.||||++.++.+.. +.+.|+. .. ...+...+...++
T Consensus 13 ~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 13 LHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFASYLI 79 (903)
T ss_pred ccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHHHHHH
Confidence 3567778776666643 2346899999999999999999998643 3688986 32 3334455556666
Q ss_pred HHHhCCCCCC------------CcChhhhHHHHHHHHc--CCCcEEEEeCCCCH---H---HHHHHhcCCCCCCCCcEEE
Q 035646 253 SQLLKLPNNG------------IWNVYDGINIIGRRLR--HKKVLLIIDDVVDI---K---QLECLAGKREWFGPGSRIV 312 (584)
Q Consensus 253 ~~l~~~~~~~------------~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~---~---~~~~l~~~~~~~~~gs~Ii 312 (584)
..+....... ..+.......+...+. +.+++|||||+... . .+..+... ..++.++|
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv 156 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLV 156 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEE
Confidence 6653211110 0122223333334443 67999999999532 2 23333433 35677888
Q ss_pred EEccccchhhccc---cceEeecC----CCCHHHHHHHhc--------------------CCchhHHHhhhhhhCCCHHH
Q 035646 313 ITSRDKHLLMMHG---VDEIYNLR----ELHDDKALQLFC--------------------GLPLALKVLGSFLYGKTTKE 365 (584)
Q Consensus 313 iTTR~~~v~~~~~---~~~~~~l~----~L~~~ea~~Lf~--------------------G~PLal~~~~~~L~~~~~~~ 365 (584)
||||......... .....++. +|+.+|+.+||. |+|+++..++..+......
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 9999853221111 12234555 899999999995 9999999888777543210
Q ss_pred HHHHHHHHhhcchhhHHHHHH-HhhhCCchhHHHHHhhhccccccCChhhHHHhhhcCCCchhhhHHHHhhccceeE-ec
Q 035646 366 WESALKRLKRESENEILDILK-ISFDGLRETEKKIFLDIACFYQGENRDYVTKILDYCDFDPVIGIRVLIDKSLIEI-ST 443 (584)
Q Consensus 366 w~~~l~~l~~~~~~~i~~~l~-~s~~~L~~~~k~~fl~la~fp~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~-~~ 443 (584)
.......+.......+...+. ..++.||++.+.++..+|+++ .++.+.+..+.. .......++.|.+.+++.. .+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~ 312 (903)
T PRK04841 236 LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMD 312 (903)
T ss_pred hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeec
Confidence 011112221112334555544 448999999999999999986 556555444443 2245788999999999653 22
Q ss_pred -C-CeEEecHHHHHHHHHHHhhh
Q 035646 444 -D-SRFWMHDLLKEICQQIVKRQ 464 (584)
Q Consensus 444 -~-~~~~mH~lv~~~a~~i~~~~ 464 (584)
+ ..|++|++++++.++....+
T Consensus 313 ~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 313 DSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCCCEEehhHHHHHHHHHHHHhc
Confidence 2 36999999999999887544
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=4.2e-10 Score=118.79 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=154.4
Q ss_pred ccccccccccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhccccc--ceEEEEechhhcccCChH
Q 035646 170 SEFILEHLVGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE--ASSCLANVREISEEGGLT 245 (584)
Q Consensus 170 ~~~i~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~s~~~~~~ 245 (584)
..++++.++||++++++|...+... ......+.|+|++|+|||++++.+++......+ ..+++. ........
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~ 100 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRY 100 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHH
Confidence 3445788999999999999998643 223456789999999999999999997755432 233333 23344566
Q ss_pred HHHHHHHHHHhCCCCC-CCcChhhhHHHHHHHHc--CCCcEEEEeCCCCHH------HHHHHhcCCCCCCCCcE--EEEE
Q 035646 246 SLQNQLLSQLLKLPNN-GIWNVYDGINIIGRRLR--HKKVLLIIDDVVDIK------QLECLAGKREWFGPGSR--IVIT 314 (584)
Q Consensus 246 ~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--IiiT 314 (584)
.++..++.++.+...+ ...+.......+.+.+. +++.+||||+++... .+..+....... ++++ +|.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEE
Confidence 7888888887552221 22344556666677664 456899999997542 344444332211 2333 5666
Q ss_pred ccccchhhccc-------cceEeecCCCCHHHHHHHhc-----C------CchhHHHhhhhhhC--CCHHHHHHHHHH--
Q 035646 315 SRDKHLLMMHG-------VDEIYNLRELHDDKALQLFC-----G------LPLALKVLGSFLYG--KTTKEWESALKR-- 372 (584)
Q Consensus 315 TR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~-----G------~PLal~~~~~~L~~--~~~~~w~~~l~~-- 372 (584)
+....+..... ....+.+++++.++..+++. + .+-++..++..... .+......++..
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55543322111 12467899999999988877 2 12344444443322 111111111111
Q ss_pred ---Hhhc----chhhH--------HHHHHHhhhCCchhHHHHHhhhccccc----cCChhhHH----HhhhcCCCc----
Q 035646 373 ---LKRE----SENEI--------LDILKISFDGLRETEKKIFLDIACFYQ----GENRDYVT----KILDYCDFD---- 425 (584)
Q Consensus 373 ---l~~~----~~~~i--------~~~l~~s~~~L~~~~k~~fl~la~fp~----~~~~~~l~----~~~~~~~~~---- 425 (584)
.... ..+.+ .......+..||.++|.++..++.... ......+. .+....|..
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~ 339 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTH 339 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcH
Confidence 0000 11122 223455688999999988887765432 22222222 111112222
Q ss_pred --hhhhHHHHhhccceeEe
Q 035646 426 --PVIGIRVLIDKSLIEIS 442 (584)
Q Consensus 426 --~~~~l~~L~~~sLi~~~ 442 (584)
...+++.|...|||+..
T Consensus 340 ~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 340 TRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHHhcCCeEEE
Confidence 25689999999999864
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.21 E-value=2.1e-10 Score=130.28 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=174.0
Q ss_pred ccccchhhHHHHHHHhhhcCCc-eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEec----hhhcccCChHHHHHH
Q 035646 176 HLVGIDSHLKNLRLLMDKECNV-VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANV----REISEEGGLTSLQNQ 250 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~----~~~s~~~~~~~~~~~ 250 (584)
.++||+.+++.|...+..-..+ ..++.+.|.+|||||+|+++|...+.+.+ ..++..- ..-.+-..+....++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999998855433 67999999999999999999999765541 1111100 000111122233333
Q ss_pred HHHHHhCCCCCC-----------------------------------C-----cChhh-----hHHHHHHHH-cCCCcEE
Q 035646 251 LLSQLLKLPNNG-----------------------------------I-----WNVYD-----GINIIGRRL-RHKKVLL 284 (584)
Q Consensus 251 i~~~l~~~~~~~-----------------------------------~-----~~~~~-----~~~~l~~~L-~~k~~Ll 284 (584)
++.+++...... . ..... ....+.... +.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 333331110000 0 00000 011122222 3569999
Q ss_pred EEeCC-CCHHH----HHHHhcCCCC-CCCCcEEEE--Ecccc--chhhccccceEeecCCCCHHHHHHHhc---------
Q 035646 285 IIDDV-VDIKQ----LECLAGKREW-FGPGSRIVI--TSRDK--HLLMMHGVDEIYNLRELHDDKALQLFC--------- 345 (584)
Q Consensus 285 VlDdv-~~~~~----~~~l~~~~~~-~~~gs~Iii--TTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~--------- 345 (584)
|+||+ |-+.. ++.+.....- ...-..|.. |.+.. .+.........+.|.||+..+...+..
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 99999 53222 3333333210 000112222 22222 122223344788999999999999987
Q ss_pred -------------CCchhHHHhhhhhhCC-------CHHHHHHHHHHHhhcc-hhhHHHHHHHhhhCCchhHHHHHhhhc
Q 035646 346 -------------GLPLALKVLGSFLYGK-------TTKEWESALKRLKRES-ENEILDILKISFDGLRETEKKIFLDIA 404 (584)
Q Consensus 346 -------------G~PLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~k~~fl~la 404 (584)
|+|+.+..+-..+... +...|..-..++.... .+++...+....+.||...++++...|
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA 318 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAA 318 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999888663 3455555544443322 233667799999999999999999999
Q ss_pred cccccCChhhHHHhhhcCCCchhhhHHHHhhccceeEec--------CCeE---EecHHHHHHHHHHHhhh
Q 035646 405 CFYQGENRDYVTKILDYCDFDPVIGIRVLIDKSLIEIST--------DSRF---WMHDLLKEICQQIVKRQ 464 (584)
Q Consensus 405 ~fp~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~~~---~mH~lv~~~a~~i~~~~ 464 (584)
|+.+.++.+.|..++...+......+......++|.+.+ .... ..|++||+.|.....++
T Consensus 319 ~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 319 CIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 999999999998888765554445555555666666532 1112 57999999988765444
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.18 E-value=5.7e-09 Score=108.97 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=147.8
Q ss_pred ccccccccccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhccccc------ceEEEEechhhccc
Q 035646 170 SEFILEHLVGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE------ASSCLANVREISEE 241 (584)
Q Consensus 170 ~~~i~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~w~~~~~~~s~~ 241 (584)
..++++.++||++++++|...|... ......+.|+|++|+|||++++.+++......+ ..+|+. +...
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~ 85 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQIL 85 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCC
Confidence 3455788999999999999998742 223467899999999999999999986543222 234443 2334
Q ss_pred CChHHHHHHHHHHHhC--CCCC-CCcChhhhHHHHHHHHc--CCCcEEEEeCCCCH-----HHHHHHhcCC--CCC-CCC
Q 035646 242 GGLTSLQNQLLSQLLK--LPNN-GIWNVYDGINIIGRRLR--HKKVLLIIDDVVDI-----KQLECLAGKR--EWF-GPG 308 (584)
Q Consensus 242 ~~~~~~~~~i~~~l~~--~~~~-~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~-----~~~~~l~~~~--~~~-~~g 308 (584)
.....++..++.++.. ...+ ...+..+....+.+.+. +++++||||+++.. +.+..+.... ... +..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 4556788888888742 1111 11233344455555553 56789999999755 1233333221 111 123
Q ss_pred cEEEEEccccchhhcc------c-cceEeecCCCCHHHHHHHhc-----C-C-----chhHHHhhhhhhC--CCHHHHHH
Q 035646 309 SRIVITSRDKHLLMMH------G-VDEIYNLRELHDDKALQLFC-----G-L-----PLALKVLGSFLYG--KTTKEWES 368 (584)
Q Consensus 309 s~IiiTTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~-----G-~-----PLal~~~~~~L~~--~~~~~w~~ 368 (584)
..+|.+|......... . ....+.+++.+.++..+++. + . +-++..++..... .+...-..
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 3445555444321111 1 12467899999999999887 1 1 2233333332221 11111111
Q ss_pred HHHHH-----hh----cchhhHH--------HHHHHhhhCCchhHHHHHhhhccccc----cCChhhHHH----hhhcCC
Q 035646 369 ALKRL-----KR----ESENEIL--------DILKISFDGLRETEKKIFLDIACFYQ----GENRDYVTK----ILDYCD 423 (584)
Q Consensus 369 ~l~~l-----~~----~~~~~i~--------~~l~~s~~~L~~~~k~~fl~la~fp~----~~~~~~l~~----~~~~~~ 423 (584)
++... .. ...+.+. .....++..||.+++.++..++..-. ......+.. +....|
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 325 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIG 325 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcC
Confidence 11110 00 0111122 23455678899988887777664322 122222222 111112
Q ss_pred Cc------hhhhHHHHhhccceeEec
Q 035646 424 FD------PVIGIRVLIDKSLIEIST 443 (584)
Q Consensus 424 ~~------~~~~l~~L~~~sLi~~~~ 443 (584)
.. ...+++.|...|||+...
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 21 156799999999999753
No 12
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.17 E-value=1.7e-09 Score=117.15 Aligned_cols=275 Identities=21% Similarity=0.230 Sum_probs=173.9
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
+.+.|-|...++.|.. ..+.+.+.|..++|.|||||+.++.. ....-..+.|+.. .....+...+...++.
T Consensus 18 ~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsl---de~dndp~rF~~yLi~ 88 (894)
T COG2909 18 PDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSL---DESDNDPARFLSYLIA 88 (894)
T ss_pred cccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeec---CCccCCHHHHHHHHHH
Confidence 4556777766665543 23579999999999999999999988 3344567889872 1345566777777777
Q ss_pred HHhCCCCCCC------------cChhhhHHHHHHHHc--CCCcEEEEeCCC---CH---HHHHHHhcCCCCCCCCcEEEE
Q 035646 254 QLLKLPNNGI------------WNVYDGINIIGRRLR--HKKVLLIIDDVV---DI---KQLECLAGKREWFGPGSRIVI 313 (584)
Q Consensus 254 ~l~~~~~~~~------------~~~~~~~~~l~~~L~--~k~~LlVlDdv~---~~---~~~~~l~~~~~~~~~gs~Iii 313 (584)
.+....+... .+.......+...+. .++..+||||.. ++ ..++.++... .++-.+|+
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv 165 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVV 165 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEE
Confidence 7643222211 222333444445443 468999999994 22 3355555553 57889999
Q ss_pred Eccccchhhccc---cceEeecC----CCCHHHHHHHhc---CCchhHHHhhhhhhCCCHHHHHHHHHH--Hhhc---c-
Q 035646 314 TSRDKHLLMMHG---VDEIYNLR----ELHDDKALQLFC---GLPLALKVLGSFLYGKTTKEWESALKR--LKRE---S- 377 (584)
Q Consensus 314 TTR~~~v~~~~~---~~~~~~l~----~L~~~ea~~Lf~---G~PLal~~~~~~L~~~~~~~w~~~l~~--l~~~---~- 377 (584)
|||+..-+.... ....++++ .|+.+|+.++|. |.|+--..+..... ..+.|...+.- |... +
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~--~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYD--RTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHh--hcccHHHHHHHHHHHccCCCcH
Confidence 999985433211 11234444 589999999998 46665555544442 23345444432 1111 0
Q ss_pred ----------hhhHHH-HHHHhhhCCchhHHHHHhhhccccccCChhhHHHhhhcCCCchhhhHHHHhhccceeE--ec-
Q 035646 378 ----------ENEILD-ILKISFDGLRETEKKIFLDIACFYQGENRDYVTKILDYCDFDPVIGIRVLIDKSLIEI--ST- 443 (584)
Q Consensus 378 ----------~~~i~~-~l~~s~~~L~~~~k~~fl~la~fp~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~--~~- 443 (584)
...+.+ ..+..++.||++.|..++-+|++.. +. ++|...+... ......+++|.+++|+-. ++
T Consensus 244 ~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~-~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 244 EQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGE-ENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred HHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcC-CcHHHHHHHHHhCCCceeeecCC
Confidence 112222 3566789999999999999999842 12 2333333222 234567999999998763 22
Q ss_pred CCeEEecHHHHHHHHHHHhhhC
Q 035646 444 DSRFWMHDLLKEICQQIVKRQS 465 (584)
Q Consensus 444 ~~~~~mH~lv~~~a~~i~~~~~ 465 (584)
++.|+.|.++.+|.+.-.+.+.
T Consensus 321 ~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 321 GQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CceeehhHHHHHHHHhhhcccc
Confidence 4569999999999998877654
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=1.3e-09 Score=110.84 Aligned_cols=258 Identities=15% Similarity=0.121 Sum_probs=138.3
Q ss_pred cccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..|+|+++.++.|..++... ......+.|+|++|+|||+||+.+++.....+. ... ......... +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~----~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS----GPALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec----cchhcCchh-HHHH
Confidence 46999999999999888632 223456889999999999999999997754321 111 011111111 1111
Q ss_pred HHHHhCCCCCCCcCh----hhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhcc--c
Q 035646 252 LSQLLKLPNNGIWNV----YDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMMH--G 325 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~----~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--~ 325 (584)
+..+....-.-.++. ......+...+.+.+..+|+|+..+..++... ..+.+-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 111110000000000 01122233334444444444444333222211 12345566677765433221 1
Q ss_pred cceEeecCCCCHHHHHHHhc------CC---chhHHHhhhhhhCCCHHHHHHHHHHHh------h---cch---hhHHHH
Q 035646 326 VDEIYNLRELHDDKALQLFC------GL---PLALKVLGSFLYGKTTKEWESALKRLK------R---ESE---NEILDI 384 (584)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~------G~---PLal~~~~~~L~~~~~~~w~~~l~~l~------~---~~~---~~i~~~ 384 (584)
....+.+++++.++..+++. +. |=++..++....+.. ..-...++.+. . ... ......
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 23567899999999999988 22 223334443332211 11111111111 0 011 122233
Q ss_pred HHHhhhCCchhHHHHHh-hhcccccc-CChhhHHHhhhcCCCchhhhHH-HHhhccceeEecCCeE
Q 035646 385 LKISFDGLRETEKKIFL-DIACFYQG-ENRDYVTKILDYCDFDPVIGIR-VLIDKSLIEISTDSRF 447 (584)
Q Consensus 385 l~~s~~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~~ 447 (584)
+...+..|++..+..+. .++.+..+ ...+.+...+.......+..++ .|++++||+....|++
T Consensus 229 l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 229 LMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 55667888888887776 44555443 4677888888777777788888 6999999987666643
No 14
>PF05729 NACHT: NACHT domain
Probab=99.08 E-value=6.9e-10 Score=101.80 Aligned_cols=139 Identities=24% Similarity=0.316 Sum_probs=82.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc------cceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF------EASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINI 272 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 272 (584)
|++.|+|.+|+||||+++.++..+.... ...+|+. .+..........+...+...... ....... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPE----SIAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhcc----chhhhHH---H
Confidence 5789999999999999999998755443 3334443 32222222222333333333211 1111111 2
Q ss_pred HHHHH-cCCCcEEEEeCCCCHHH---------HHHHh-cCCCC-CCCCcEEEEEccccch---hhccccceEeecCCCCH
Q 035646 273 IGRRL-RHKKVLLIIDDVVDIKQ---------LECLA-GKREW-FGPGSRIVITSRDKHL---LMMHGVDEIYNLRELHD 337 (584)
Q Consensus 273 l~~~L-~~k~~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~~ 337 (584)
+...+ ..++++||+|++++... +..++ ..+.. ..++++++||+|.... .........+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 22222 57899999999964322 12222 11111 2578999999998765 22233446799999999
Q ss_pred HHHHHHhc
Q 035646 338 DKALQLFC 345 (584)
Q Consensus 338 ~ea~~Lf~ 345 (584)
++..+++.
T Consensus 153 ~~~~~~~~ 160 (166)
T PF05729_consen 153 EDIKQYLR 160 (166)
T ss_pred HHHHHHHH
Confidence 99998875
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=7.5e-10 Score=107.64 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=82.0
Q ss_pred cccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH-----
Q 035646 177 LVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL----- 251 (584)
Q Consensus 177 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i----- 251 (584)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.........+|+... . .........+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~----~-~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFL----E-ESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCT----T-BSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecc----c-chhhhHHHHHHHHHH
Confidence 799999999999999854 246889999999999999999999875433344444321 1 1111111111
Q ss_pred -----HHHHh---CCCC------CCCcChhhhHHHHHHHHc--CCCcEEEEeCCCCHH-----------HHHHHhcCCCC
Q 035646 252 -----LSQLL---KLPN------NGIWNVYDGINIIGRRLR--HKKVLLIIDDVVDIK-----------QLECLAGKREW 304 (584)
Q Consensus 252 -----~~~l~---~~~~------~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----------~~~~l~~~~~~ 304 (584)
...+. .... ............+.+.+. +++++||+||++... .+..+......
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 11111 1100 011222333444444443 356999999996443 12233333222
Q ss_pred CCCCcEEEEEccccchhh-------ccccceEeecCCCCHHHHHHHhc
Q 035646 305 FGPGSRIVITSRDKHLLM-------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 305 ~~~gs~IiiTTR~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+-+.|+++|...-... ..+....+.|++|+.+++.+++.
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~ 201 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLK 201 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHH
Confidence 334445555554321111 12333459999999999999986
No 16
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=1.3e-09 Score=111.84 Aligned_cols=257 Identities=17% Similarity=0.144 Sum_probs=137.2
Q ss_pred cccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..|+|+++.++.+..++... ......+.|+|++|+|||+||+.+++.....+. +.. . .. ......+..+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~---~~-~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-G---PA-LEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-c---cc-ccChHHHHHH
Confidence 67999999999998888632 233567889999999999999999998754321 111 0 00 0001111122
Q ss_pred HHHHhCCCCCCCcChh----hhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhcc--c
Q 035646 252 LSQLLKLPNNGIWNVY----DGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMMH--G 325 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~----~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--~ 325 (584)
+..+....-.-.++.+ ...+.+...+.+.+..+|+|+..+...+.. . ..+.+-|..|+|...+.... .
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~---l~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---D---LPPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---c---CCCceEEeecCCcccCCHHHHHh
Confidence 2211000000000000 011112222223333333333222111110 0 12345566677755433221 1
Q ss_pred cceEeecCCCCHHHHHHHhc------CCch---hHHHhhhhhhCCCHHHHHHHHHHHhh---------cch---hhHHHH
Q 035646 326 VDEIYNLRELHDDKALQLFC------GLPL---ALKVLGSFLYGKTTKEWESALKRLKR---------ESE---NEILDI 384 (584)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~------G~PL---al~~~~~~L~~~~~~~w~~~l~~l~~---------~~~---~~i~~~ 384 (584)
....+++++++.++..+++. +.++ ++..++....+ ++......++.+.. ... ......
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 23568999999999999998 3332 23333333222 12222222222110 011 223344
Q ss_pred HHHhhhCCchhHHHHHh-hhcccccc-CChhhHHHhhhcCCCchhhhHH-HHhhccceeEecCCe
Q 035646 385 LKISFDGLRETEKKIFL-DIACFYQG-ENRDYVTKILDYCDFDPVIGIR-VLIDKSLIEISTDSR 446 (584)
Q Consensus 385 l~~s~~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~ 446 (584)
+...+..|++..+..+. .+..|..+ ...+.+...+..+....+..++ .|++.+||+....|+
T Consensus 250 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 250 LGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred hCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 56667889888888886 66666554 4678888888777777777888 999999998766553
No 17
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=3.1e-09 Score=106.85 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=170.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
.+.+.++|.|||||||++-++.+ ++..|....|+.+...++...-+ .-.+...+ .- ...+-+.....+....
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v---~~~~ag~~-gl---~~~~g~~~~~~~~~~~ 85 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALV---FPTLAGAL-GL---HVQPGDSAVDTLVRRI 85 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHh---HHHHHhhc-cc---ccccchHHHHHHHHHH
Confidence 58999999999999999999999 88889988888765444433222 22222211 11 1111123344566777
Q ss_pred cCCCcEEEEeCCCCHHH-HHHHhcCCCCCCCCcEEEEEccccchhhccccceEeecCCCCHH-HHHHHhc----------
Q 035646 278 RHKKVLLIIDDVVDIKQ-LECLAGKREWFGPGSRIVITSRDKHLLMMHGVDEIYNLRELHDD-KALQLFC---------- 345 (584)
Q Consensus 278 ~~k~~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~---------- 345 (584)
.+++.++|+||...... ...+...+....+.-.|+.|+|+... ...+..+.+++|+.. ++.++|.
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 88999999999965432 22222222222456678899998733 223455677777765 6777765
Q ss_pred ------------------CCchhHHHhhhhhhCCCHHHHHHHHHH----Hhhc------chhhHHHHHHHhhhCCchhHH
Q 035646 346 ------------------GLPLALKVLGSFLYGKTTKEWESALKR----LKRE------SENEILDILKISFDGLRETEK 397 (584)
Q Consensus 346 ------------------G~PLal~~~~~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~s~~~L~~~~k 397 (584)
|.|++|..+++..+.....+....++. +... ........+..||.-|+..++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 999999999999988776665555543 2221 124567789999999999999
Q ss_pred HHHhhhccccccCChhhHHHhhhc-----CCCchhhhHHHHhhccceeEec---CCeEEecHHHHHHHHHHHhhh
Q 035646 398 KIFLDIACFYQGENRDYVTKILDY-----CDFDPVIGIRVLIDKSLIEIST---DSRFWMHDLLKEICQQIVKRQ 464 (584)
Q Consensus 398 ~~fl~la~fp~~~~~~~l~~~~~~-----~~~~~~~~l~~L~~~sLi~~~~---~~~~~mH~lv~~~a~~i~~~~ 464 (584)
..|..++.|...++.+........ +.+.....+..|+++|++...+ .-+|+.-+-++.|+.....+.
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988876632222211 2223356788899999987554 224777777777777666543
No 18
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.77 E-value=2.6e-07 Score=92.05 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=79.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR- 276 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 276 (584)
...+.|+|++|+|||||++.+++.....-...+|+. ....+..+++..+...+... ... .+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~-~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLE-TEG-RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCC-CCC-CCHHHHHHHHHHHH
Confidence 458999999999999999999987653211122322 22345567777777665322 211 2222222333322
Q ss_pred ----HcCCCcEEEEeCCCCH--HHHHHHh---cCCCCCCCCcEEEEEccccch--hh------c-cccceEeecCCCCHH
Q 035646 277 ----LRHKKVLLIIDDVVDI--KQLECLA---GKREWFGPGSRIVITSRDKHL--LM------M-HGVDEIYNLRELHDD 338 (584)
Q Consensus 277 ----L~~k~~LlVlDdv~~~--~~~~~l~---~~~~~~~~gs~IiiTTR~~~v--~~------~-~~~~~~~~l~~L~~~ 338 (584)
..+++.++|+||++.. ..++.+. ...........|++|...... +. . ......+++++++.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2578899999999753 3444433 221111223345565543211 00 0 112346789999999
Q ss_pred HHHHHhc
Q 035646 339 KALQLFC 345 (584)
Q Consensus 339 ea~~Lf~ 345 (584)
|..+++.
T Consensus 196 e~~~~l~ 202 (269)
T TIGR03015 196 ETREYIE 202 (269)
T ss_pred HHHHHHH
Confidence 9988875
No 19
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.73 E-value=2.3e-08 Score=100.51 Aligned_cols=94 Identities=28% Similarity=0.414 Sum_probs=80.8
Q ss_pred CCceeeEEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCccc--------
Q 035646 15 PHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAF-------- 86 (584)
Q Consensus 15 ~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~-------- 86 (584)
.....||||||+.. +....++-|.-.|+-+|++||+|-+.+..|+ +.+++.+.|..++.+|.|+||+..+
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 35689999999865 3567999999999999999999998898886 6689999999999999999999864
Q ss_pred chhhHHHHHHHHHHhhcCCCcEEEeeeec
Q 035646 87 STWCLDELVHILECKNTNNQQMVYPIFYD 115 (584)
Q Consensus 87 s~~c~~El~~~~~~~~~~~~~~v~Pvf~~ 115 (584)
-.|...|+..+++|. ..|+|||-.
T Consensus 687 eDWVHKEl~~Afe~~-----KNIiPI~D~ 710 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQ-----KNIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHHhc-----CCeeeeecc
Confidence 358888999888877 459999854
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.2e-07 Score=95.05 Aligned_cols=137 Identities=23% Similarity=0.395 Sum_probs=89.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
++++|-...+..+ +. ++.+.-..+||++|+||||||+.++......|...-=+ ..++.++ +.++..
T Consensus 30 ~HLlg~~~~lrr~---v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdl-r~i~e~ 95 (436)
T COG2256 30 EHLLGEGKPLRRA---VE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDL-REIIEE 95 (436)
T ss_pred HhhhCCCchHHHH---Hh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHH-HHHHHH
Confidence 5566655555444 43 34567788999999999999999999777766422111 1122221 122211
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEE--Eccccchhh---ccccc
Q 035646 255 LLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVI--TSRDKHLLM---MHGVD 327 (584)
Q Consensus 255 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~---~~~~~ 327 (584)
. -.....+++.+|++|.|. +..+-+.|++.. .+|.-|+| ||.|+...- .....
T Consensus 96 a-----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 96 A-----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred H-----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 0 122335899999999994 566777777775 46776666 777764311 12245
Q ss_pred eEeecCCCCHHHHHHHhc
Q 035646 328 EIYNLRELHDDKALQLFC 345 (584)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~ 345 (584)
.++++++|+.++..+++.
T Consensus 156 ~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 156 RVFELKPLSSEDIKKLLK 173 (436)
T ss_pred heeeeecCCHHHHHHHHH
Confidence 789999999999999987
No 21
>PF13173 AAA_14: AAA domain
Probab=98.62 E-value=7.2e-08 Score=84.49 Aligned_cols=119 Identities=19% Similarity=0.114 Sum_probs=77.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
+++.|.|+.|+|||||++++++... .-...+++. . ... ....... . +..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~---~~~-~~~~~~~----------------~-~~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-F---DDP-RDRRLAD----------------P-DLLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-c---CCH-HHHHHhh----------------h-hhHHHHHHhhc
Confidence 6899999999999999999998765 223445554 1 110 0000000 0 01222333334
Q ss_pred CCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhc------cccceEeecCCCCHHHH
Q 035646 279 HKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMM------HGVDEIYNLRELHDDKA 340 (584)
Q Consensus 279 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 340 (584)
.++.+++||++.....|...+..+....+..+|++|+.+...... .|....+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 478899999998877777776665555567899999987755422 23445789999998874
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.61 E-value=3.2e-06 Score=92.96 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=106.7
Q ss_pred cccccccchhhHHHHHHHhhh---cCCceEEEEEEecCCccHHHHHHHHHhhhccc-----cc--ceEEEEechhhcccC
Q 035646 173 ILEHLVGIDSHLKNLRLLMDK---ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-----FE--ASSCLANVREISEEG 242 (584)
Q Consensus 173 i~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~w~~~~~~~s~~~ 242 (584)
+++.+.||++|+++|...|.. ++....++.|+|++|.|||+.++.+.+++... .+ ..+++. +....
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNVV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCccC
Confidence 388999999999999998873 23334577899999999999999998865321 12 133443 23334
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc---CCCcEEEEeCCCCHH-----HHHHHhcCCCCCCCCcEEEE-
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR---HKKVLLIIDDVVDIK-----QLECLAGKREWFGPGSRIVI- 313 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~Iii- 313 (584)
....+...|..++.+...............+...+. +...+||||+++... .+-.|+.... ..+++|+|
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLI 906 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLI 906 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEE
Confidence 567777888887755433323333344444554442 224589999996432 2222332211 23555544
Q ss_pred -Eccccc--------hhhccccceEeecCCCCHHHHHHHhc----C-----CchhHHHhhhhhh
Q 035646 314 -TSRDKH--------LLMMHGVDEIYNLRELHDDKALQLFC----G-----LPLALKVLGSFLY 359 (584)
Q Consensus 314 -TTR~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~----G-----~PLal~~~~~~L~ 359 (584)
+|.... +...++ ...+...|.+.++-.+++. . -+-||..+|...+
T Consensus 907 GISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred EecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 333211 111122 1235678999999999987 1 3555656665443
No 23
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.61 E-value=2e-07 Score=87.20 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 176 HLVGIDSHLKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.|+||+++++++...+. ..+...+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 223347899999999999999999999987766
No 24
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.59 E-value=6.4e-07 Score=79.77 Aligned_cols=123 Identities=16% Similarity=0.088 Sum_probs=70.7
Q ss_pred ccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhC
Q 035646 178 VGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLK 257 (584)
Q Consensus 178 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~ 257 (584)
+|++..+..+...+... ..+.+.|+|.+|+|||++++.+++.........+++. . ......... ...... .
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~---~~~~~~~~~-~~~~~~-~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-A---SDLLEGLVV-AELFGH-F- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-h---hhhhhhhHH-HHHhhh-h-
Confidence 47888899998888643 3468899999999999999999997643333444443 1 111111100 000000 0
Q ss_pred CCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH-----HHHHHHhcCCCCC---CCCcEEEEEccccc
Q 035646 258 LPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI-----KQLECLAGKREWF---GPGSRIVITSRDKH 319 (584)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IiiTTR~~~ 319 (584)
............++.++|+||++.. ..+...+...... ..+..||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999853 2233333333221 36778888888764
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=2.3e-06 Score=90.59 Aligned_cols=139 Identities=22% Similarity=0.369 Sum_probs=84.1
Q ss_pred cccccchhhHHH---HHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKN---LRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..+||++..+.. +..++..+ ....+.|+|++|+||||||+.+++.....|. .+. . ...+... ...+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~----a-~~~~~~~-ir~i 80 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS----A-VTSGVKD-LREV 80 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe----c-ccccHHH-HHHH
Confidence 568888877665 77777643 3557888999999999999999987654432 111 0 0111111 1122
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEE--Eccccchh---hc
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVI--TSRDKHLL---MM 323 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~---~~ 323 (584)
+.. .... ..+++.+|++|+++. ..+.+.++..+. .|..++| ||.+.... ..
T Consensus 81 i~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 81 IEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 211 1111 245788999999974 445566665543 3444444 34443211 11
Q ss_pred cccceEeecCCCCHHHHHHHhc
Q 035646 324 HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 ~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
......+.+.+++.++..+++.
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~ 161 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLK 161 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHH
Confidence 1233678999999999999887
No 26
>PRK06893 DNA replication initiation factor; Validated
Probab=98.56 E-value=1e-06 Score=85.43 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=70.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
.+.+.|+|++|+|||+|+..+++....+...+.|+. .... ...... +.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~~----------------------~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSPA----------------------VLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhHH----------------------HHhhc
Confidence 357899999999999999999998655555566665 1100 000001 11112
Q ss_pred cCCCcEEEEeCCCCH---HHHH-HHhcCCCCC-CCCcEEE-EEccc---------cchhhccccceEeecCCCCHHHHHH
Q 035646 278 RHKKVLLIIDDVVDI---KQLE-CLAGKREWF-GPGSRIV-ITSRD---------KHLLMMHGVDEIYNLRELHDDKALQ 342 (584)
Q Consensus 278 ~~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~Ii-iTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~ 342 (584)
+ +.-+|||||++.. ..|+ .+...+... ..|..+| +|++. +.+...+.....+++++++.++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 2 3358999999752 2333 222222111 2355554 45543 2333334445688999999999999
Q ss_pred Hhc
Q 035646 343 LFC 345 (584)
Q Consensus 343 Lf~ 345 (584)
++.
T Consensus 169 iL~ 171 (229)
T PRK06893 169 VLQ 171 (229)
T ss_pred HHH
Confidence 987
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=6e-07 Score=78.82 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=74.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc-----ccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN-----FEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINI 272 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 272 (584)
.+.+.|+|.+|+|||+++..+++..... -...+|+. .........+...++..+...... ..+.......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 4689999999999999999999876442 23455665 444457889999999887544333 3455666677
Q ss_pred HHHHHcCCC-cEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEEEccc
Q 035646 273 IGRRLRHKK-VLLIIDDVVDI---KQLECLAGKREWFGPGSRIVITSRD 317 (584)
Q Consensus 273 l~~~L~~k~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 317 (584)
+.+.+...+ .+||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 788776655 49999999654 33445543333 567777776655
No 28
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=6.8e-06 Score=89.94 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=91.0
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
.++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+...-.. . ....+.-.....+...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQPCGVCRACREIDEG 85 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CCCCcccHHHHHHhcC
Confidence 568999999999999987543 24667799999999999999999865321000 0 0000000000011000
Q ss_pred ----HhCCCCCCCcChhhhHHHHHHH----HcCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEccccchh-hc
Q 035646 255 ----LLKLPNNGIWNVYDGINIIGRR----LRHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSRIVITSRDKHLL-MM 323 (584)
Q Consensus 255 ----l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~ 323 (584)
+...+.......++....+... ..++.-++|||+++.. ..++.|+..+.......++|+||.+..-. ..
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 0000000000111111111111 1245568999999743 44677766655555677877777765322 11
Q ss_pred -cccceEeecCCCCHHHHHHHhc
Q 035646 324 -HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 -~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
......+.++.++.++..+.+.
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~ 188 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLE 188 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHH
Confidence 2234678999999999988776
No 29
>PTZ00202 tuzin; Provisional
Probab=98.51 E-value=4.6e-05 Score=78.21 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=97.6
Q ss_pred ccccccchhhHHHHHHHhhhcC-CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC-NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
...|+||+.++.+|...|...+ +..+++.|+|++|+|||||++.+..... ...++.+. . +..+++..++
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-----r-g~eElLr~LL 330 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-----R-GTEDTLRSVV 330 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-----C-CHHHHHHHHH
Confidence 5889999999999999997433 2357999999999999999999997653 22454432 2 5688999999
Q ss_pred HHHhCCCCCCCcChhhhHHHHHHHH-----c-CCCcEEEEeCCC--CHHH-HHHHhcCCCCCCCCcEEEEEccccchh--
Q 035646 253 SQLLKLPNNGIWNVYDGINIIGRRL-----R-HKKVLLIIDDVV--DIKQ-LECLAGKREWFGPGSRIVITSRDKHLL-- 321 (584)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVlDdv~--~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~-- 321 (584)
..+.-... ....++...+.+.+ . +++.+||+-==+ +..- ..+.. .+.....-|+|++----+..-
T Consensus 331 ~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 331 KALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchh
Confidence 98654222 22233334443333 2 566777765322 2211 11111 111113457777643322211
Q ss_pred -hccccceEeecCCCCHHHHHHHhc
Q 035646 322 -MMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 322 -~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+.-+.|-+++++.++|.+...
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHh
Confidence 112234678999999999999887
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=1.1e-05 Score=83.10 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=86.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc-cc-eEEEEechhhcccCChHHHH--HH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-EA-SSCLANVREISEEGGLTSLQ--NQ 250 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~w~~~~~~~s~~~~~~~~~--~~ 250 (584)
..++|++..++.+.+++..+ ..+.+.++|++|+|||++|+.+++...... .. ...+. ........ ...+. ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~-~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG-KKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc-hhhhhcCcc
Confidence 56899999999999988744 334678999999999999999998764332 21 22332 11100000 00000 00
Q ss_pred HHHHHhCCCCCCCcChhhhHHHH-HHHH-----cCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEccccc-hh
Q 035646 251 LLSQLLKLPNNGIWNVYDGINII-GRRL-----RHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSRIVITSRDKH-LL 321 (584)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~~l-~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~ 321 (584)
.... .+...............+ .... .+.+-++|+||++.. .....+...+......+++|+||.+.. +.
T Consensus 91 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 91 FAHF-LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhh-hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 0000 000000000001111111 1111 134558999999643 233334333332345677877775432 22
Q ss_pred hc-cccceEeecCCCCHHHHHHHhc
Q 035646 322 MM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 322 ~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.. ......+++.+++.++..+++.
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLE 194 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHH
Confidence 11 1233567889999999888876
No 31
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.44 E-value=2.3e-06 Score=82.91 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=77.4
Q ss_pred chhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCC
Q 035646 180 IDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLP 259 (584)
Q Consensus 180 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~ 259 (584)
.+..++.+.+++.. .....+.|+|++|+|||+||+.+++..........++. ...... -...
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~------~~~~--------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ------ADPE--------- 83 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH------hHHH---------
Confidence 34467777777642 23568999999999999999999987654444445554 111110 0001
Q ss_pred CCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH---H-HHHHhcCCCC-CCCCcEEEEEccccch---------hhccc
Q 035646 260 NNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK---Q-LECLAGKREW-FGPGSRIVITSRDKHL---------LMMHG 325 (584)
Q Consensus 260 ~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~v---------~~~~~ 325 (584)
+...+.+ .-+||+||++... . .+.+...+.. ...+..+|+||+.... .....
T Consensus 84 -------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 84 -------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 1111222 3489999996432 1 2233322111 1234578888875421 11122
Q ss_pred cceEeecCCCCHHHHHHHhc
Q 035646 326 VDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~ 345 (584)
....+++++++.++...++.
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~ 169 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQ 169 (226)
T ss_pred cCeeEecCCCCHHHHHHHHH
Confidence 23578999999999888876
No 32
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3e-05 Score=80.00 Aligned_cols=266 Identities=17% Similarity=0.132 Sum_probs=153.1
Q ss_pred cccccccccccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhcccccc--eEEEEechhhcccCCh
Q 035646 169 ESEFILEHLVGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEA--SSCLANVREISEEGGL 244 (584)
Q Consensus 169 ~~~~i~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~s~~~~~ 244 (584)
...++++.+.+|+.+++++...|... +..+.-+.|+|.+|.|||+.++.+.+++...... .+++. +......
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~ 86 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTP 86 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCH
Confidence 34556778999999999999888632 1223348999999999999999999987665333 46665 4456677
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc--CCCcEEEEeCCCCHH-----HHHHHhcCCCCCCCCcEE--EEEc
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR--HKKVLLIIDDVVDIK-----QLECLAGKREWFGPGSRI--VITS 315 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~I--iiTT 315 (584)
.+++..+++++...+. ......+....+.+.+. ++.+++|||+++... .+-.|....... .++| |..+
T Consensus 87 ~~i~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~ 163 (366)
T COG1474 87 YQVLSKILNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVS 163 (366)
T ss_pred HHHHHHHHHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEe
Confidence 8888999988653222 23444555666666663 578999999996432 233333332212 4444 3334
Q ss_pred cccch--------hhccccceEeecCCCCHHHHHHHhc-----------CCchhHHHhhhhhhC-C-CHHHHHHHHHH--
Q 035646 316 RDKHL--------LMMHGVDEIYNLRELHDDKALQLFC-----------GLPLALKVLGSFLYG-K-TTKEWESALKR-- 372 (584)
Q Consensus 316 R~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~-----------G~PLal~~~~~~L~~-~-~~~~w~~~l~~-- 372 (584)
-+... ....+... +..+|-+.+|-.+.+. -.+-++..+|..-.. . +...-..++..
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred ccHHHHHHhhhhhhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 33322 12222333 6788888888888887 123333333332221 1 11111111111
Q ss_pred -Hhh-c-----chhh--------HHHHHHHhhhCCchhHHHHHhhhccccccCChh----hHHHhhhcCCC---chhhhH
Q 035646 373 -LKR-E-----SENE--------ILDILKISFDGLRETEKKIFLDIACFYQGENRD----YVTKILDYCDF---DPVIGI 430 (584)
Q Consensus 373 -l~~-~-----~~~~--------i~~~l~~s~~~L~~~~k~~fl~la~fp~~~~~~----~l~~~~~~~~~---~~~~~l 430 (584)
+.. . ..+. -..........|+.++|..+..++....+.... ....+....+. .....+
T Consensus 243 eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii 322 (366)
T COG1474 243 EIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDII 322 (366)
T ss_pred HHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHHH
Confidence 111 0 0111 123455668889998888777666553333222 22223333333 224578
Q ss_pred HHHhhccceeEe
Q 035646 431 RVLIDKSLIEIS 442 (584)
Q Consensus 431 ~~L~~~sLi~~~ 442 (584)
.+|...++|...
T Consensus 323 ~~L~~lgiv~~~ 334 (366)
T COG1474 323 SELEGLGIVSAS 334 (366)
T ss_pred HHHHhcCeEEee
Confidence 888888888754
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=2.1e-05 Score=85.18 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=90.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..+||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+-... +.. ....+.-.....+...
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~-----~~pCg~C~sC~~I~~g 84 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVT-----STPCEVCATCKAVNEG 84 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCC-----CCCCccCHHHHHHhcC
Confidence 568999999999999998543 246889999999999999999998654321 000 0000000000000000
Q ss_pred ----HhCCCCCCCcChhhhHHHHHH----HHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc-hh-h
Q 035646 255 ----LLKLPNNGIWNVYDGINIIGR----RLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH-LL-M 322 (584)
Q Consensus 255 ----l~~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~-~ 322 (584)
+...........++....+.+ -..+++-++|+|+++. ......++..+....++.++|++|.+.. +. .
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 000000000011111111111 1135667999999974 3456666655554456677777776542 21 1
Q ss_pred ccccceEeecCCCCHHHHHHHhc
Q 035646 323 MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.......+++++++.++..+.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~ 187 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLG 187 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHH
Confidence 12344678999999999988876
No 34
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=2.7e-05 Score=84.18 Aligned_cols=166 Identities=11% Similarity=0.135 Sum_probs=91.0
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..+||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+-..-... .... .+...+.-.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~--~~g~--~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADG--EGGI--TAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccc--cccC--CCCCCcccHHHHHHHcC
Confidence 568999999999999997543 246778999999999999999998654310000 0000 00000000001111000
Q ss_pred ----HhCCCCCCCcChhhhHHHHHHH----HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEE-ccccchhhc
Q 035646 255 ----LLKLPNNGIWNVYDGINIIGRR----LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVIT-SRDKHLLMM 323 (584)
Q Consensus 255 ----l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiT-TR~~~v~~~ 323 (584)
+...........++..+.+.+. ..++.-++|+|+++. ....+.|+..+..-..++++|++ |....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0000000001111111111111 135667999999974 45677777776655566665554 444444322
Q ss_pred -cccceEeecCCCCHHHHHHHhc
Q 035646 324 -HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 -~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
......+.+..++.++..+.+.
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~ 193 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLD 193 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHH
Confidence 2234678999999999888765
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.38 E-value=6e-06 Score=85.98 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=88.0
Q ss_pred ccccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
...+.|+++.+++|.+.+... -...+-+.|+|++|+|||++|+.+++.....|-.. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---------~--- 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---------V--- 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---------c---
Confidence 367899999999998876421 11245699999999999999999999776543211 0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCCCH----------------HHHHHHhcCCCCC
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVVDI----------------KQLECLAGKREWF 305 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 305 (584)
...+. ....+ ........+.+. -...+.+|+||+++.. ..+..++..+...
T Consensus 189 -~~~l~----~~~~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 189 -GSELV----RKYIG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred -hHHHH----HHhhh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 01111 11000 011111222222 2346789999999643 1122333222211
Q ss_pred --CCCcEEEEEccccchh-----hccccceEeecCCCCHHHHHHHhc
Q 035646 306 --GPGSRIVITSRDKHLL-----MMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 --~~gs~IiiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||.||...... ........++++..+.++..++|.
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHH
Confidence 2466788888754322 212345678999999999999987
No 36
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.1e-05 Score=80.48 Aligned_cols=160 Identities=12% Similarity=0.138 Sum_probs=89.8
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+....... ....+.-.....+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---------SNPCRKCIICKEIEKG 85 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCCCHHHHHHhcC
Confidence 568999999999998887442 346789999999999999999998654221100 0000000000000000
Q ss_pred ----HhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCCHH--HHHHHhcCCCCCCCCcEEEEEcccc-chhh
Q 035646 255 ----LLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVDIK--QLECLAGKREWFGPGSRIVITSRDK-HLLM 322 (584)
Q Consensus 255 ----l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~ 322 (584)
+...........++ ...+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+. .+..
T Consensus 86 ~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 00000000001111 11222222 2345699999997543 4666666655545666777766543 2322
Q ss_pred c-cccceEeecCCCCHHHHHHHhc
Q 035646 323 M-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. ......+++.+++.++..+.+.
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~ 188 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLK 188 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHH
Confidence 1 2234678999999999988776
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=3.8e-05 Score=85.83 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=91.6
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccccc--c-eEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE--A-SSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..+||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+..... . .|..+ .....+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C------------~sC~~i 82 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC------------SSCVEI 82 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc------------hHHHHH
Confidence 568999999999999887442 2456689999999999999999987643210 0 00000 000000
Q ss_pred HHH----H--hCCC-CCCCcChhhhHHHHHH-HHcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEcccc-ch
Q 035646 252 LSQ----L--LKLP-NNGIWNVYDGINIIGR-RLRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDK-HL 320 (584)
Q Consensus 252 ~~~----l--~~~~-~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v 320 (584)
... + .... .....+.......+.. -..+++-++|||+++ +.+..+.|+..+.......++|++|.+. .+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 000 0 0000 0001111111111111 123567799999996 4566777776666555667666655444 33
Q ss_pred hhc-cccceEeecCCCCHHHHHHHhc
Q 035646 321 LMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
... ......|++++|+.++..+.+.
T Consensus 163 l~TIlSRCq~f~fkpLs~eEI~~~L~ 188 (944)
T PRK14949 163 PVTVLSRCLQFNLKSLTQDEIGTQLN 188 (944)
T ss_pred hHHHHHhheEEeCCCCCHHHHHHHHH
Confidence 322 2234689999999999998776
No 38
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.33 E-value=3.6e-06 Score=83.00 Aligned_cols=132 Identities=19% Similarity=0.269 Sum_probs=84.5
Q ss_pred HHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcCh
Q 035646 187 LRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNV 266 (584)
Q Consensus 187 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 266 (584)
|.+++.+ +....+.+||++|+||||||+.++..-+.+- ..|+. .+....-..-.+.++.+..
T Consensus 153 lrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~ife~aq---------- 214 (554)
T KOG2028|consen 153 LRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDIFEQAQ---------- 214 (554)
T ss_pred HHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHHHHHHH----------
Confidence 3444443 3577889999999999999999998655432 44554 2332222222333333311
Q ss_pred hhhHHHHHHHHcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEE--Eccccchh---hccccceEeecCCCCHHH
Q 035646 267 YDGINIIGRRLRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVI--TSRDKHLL---MMHGVDEIYNLRELHDDK 339 (584)
Q Consensus 267 ~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~l~~L~~~e 339 (584)
-...+.++|.+|.+|.|. +..+-+.+++.. .+|.-++| ||.++..- .......++-|++|+.++
T Consensus 215 ------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 215 ------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNA 285 (554)
T ss_pred ------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHH
Confidence 112356789999999994 555666666664 46776665 77776431 223345788999999999
Q ss_pred HHHHhc
Q 035646 340 ALQLFC 345 (584)
Q Consensus 340 a~~Lf~ 345 (584)
...++.
T Consensus 286 v~~iL~ 291 (554)
T KOG2028|consen 286 VVTILM 291 (554)
T ss_pred HHHHHH
Confidence 998886
No 39
>PRK04195 replication factor C large subunit; Provisional
Probab=98.30 E-value=2.7e-05 Score=84.15 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=86.5
Q ss_pred cccccchhhHHHHHHHhhhcC--CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKEC--NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|.+..++.|..|+..-. ...+.+.|+|++|+||||+|..+++.+. |+... +. .+.... ......++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ie-ln----asd~r~-~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIE-LN----ASDQRT-ADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEE-Ec----cccccc-HHHHHHHH
Confidence 568999999999999987422 2267899999999999999999999773 22111 11 122111 12222222
Q ss_pred HHHhCCCCCCCcChhhhHHHHHHHHc-CCCcEEEEeCCCCH------HHHHHHhcCCCCCCCCcEEEEEccccchh---h
Q 035646 253 SQLLKLPNNGIWNVYDGINIIGRRLR-HKKVLLIIDDVVDI------KQLECLAGKREWFGPGSRIVITSRDKHLL---M 322 (584)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~---~ 322 (584)
....... .+. .++-+||+|+++.. .....+...+. ..+..||+|+.+..-. .
T Consensus 86 ~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 86 GEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 2211100 011 36779999999753 22444443333 2344566666443211 1
Q ss_pred ccccceEeecCCCCHHHHHHHhc
Q 035646 323 MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.-.....+++.+++.++....+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~ 170 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLK 170 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHH
Confidence 11234678899999998888776
No 40
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=5.8e-05 Score=81.51 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=89.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc---------------------ccceEEEE
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN---------------------FEASSCLA 233 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~w~~ 233 (584)
..++|.+..++.|...+..+. ....+.++|+.|+||||+|+.+++.+... |.....+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 568999999999998887442 34568899999999999999999865321 11111111
Q ss_pred echhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcE
Q 035646 234 NVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSR 310 (584)
Q Consensus 234 ~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ 310 (584)
.....++ ++.......+... ..+++-++|+|+++ +....+.|+..+......+.
T Consensus 95 ----aas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 95 ----AASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred ----cccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 0001111 1111111111111 23566799999997 44556677666655455665
Q ss_pred EEE-Eccccchhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 311 IVI-TSRDKHLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 311 Iii-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+|+ ||....+... ......+++.+++.++..+.+.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~ 188 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLK 188 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHH
Confidence 554 5443333322 2234788999999999887766
No 41
>PLN03025 replication factor C subunit; Provisional
Probab=98.27 E-value=5e-05 Score=77.58 Aligned_cols=151 Identities=14% Similarity=0.219 Sum_probs=85.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc-cccceEEEEechhhcccCChHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH-NFEASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
..++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++.... .|... ++. . ..+...+.. ..+.++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~e-l-n~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEA-VLE-L-NASDDRGID-VVRNKIK 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccc-eee-e-cccccccHH-HHHHHHH
Confidence 56789998889898887643 3345779999999999999999987532 23221 111 0 011111221 1222221
Q ss_pred HHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEcccc-chhhc-cccceE
Q 035646 254 QLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSRIVITSRDK-HLLMM-HGVDEI 329 (584)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~ 329 (584)
........ .-.++.-++|+|+++.. .....+...+....+.+++++++... .+... ......
T Consensus 87 ~~~~~~~~--------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 87 MFAQKKVT--------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHhcccc--------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 11100000 00134668999999743 33344443333335667777766443 22111 112357
Q ss_pred eecCCCCHHHHHHHhc
Q 035646 330 YNLRELHDDKALQLFC 345 (584)
Q Consensus 330 ~~l~~L~~~ea~~Lf~ 345 (584)
+++.+++.++..+.+.
T Consensus 153 i~f~~l~~~~l~~~L~ 168 (319)
T PLN03025 153 VRFSRLSDQEILGRLM 168 (319)
T ss_pred ccCCCCCHHHHHHHHH
Confidence 8999999999888776
No 42
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=8.9e-05 Score=81.18 Aligned_cols=162 Identities=13% Similarity=0.137 Sum_probs=89.8
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..+||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+-..-... .... .....+.-.....+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~~~~--~~~pCg~C~~C~~i~-- 88 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--QGGI--TATPCGVCQACRDID-- 88 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--ccCC--CCCCCCccHHHHHHH--
Confidence 568999999999999988543 246778999999999999999988653210000 0000 000000001111110
Q ss_pred HhCCCCCC---CcC-hhhhHHHHHHHH--------cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccc-cc
Q 035646 255 LLKLPNNG---IWN-VYDGINIIGRRL--------RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRD-KH 319 (584)
Q Consensus 255 l~~~~~~~---~~~-~~~~~~~l~~~L--------~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~ 319 (584)
.....+ ... ....++.+++.+ .++.-++|||+++. ....+.++..+......+++|++|.+ ..
T Consensus 89 --~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 89 --SGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred --cCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 000000 000 001122222222 23455899999974 55677777766654566666655533 33
Q ss_pred hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 320 LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+... ......+++++++.++..+.+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~ 193 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLT 193 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHH
Confidence 3322 2234688999999999888876
No 43
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=6.7e-05 Score=82.14 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=86.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..+||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-..-.. -+.. .+.-.....+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~p--------Cg~C~sCr~i~~g 85 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEP--------CGVCQSCTQIDAG 85 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCC--------CcccHHHHHHhcc
Confidence 568999999999999988542 24678999999999999999999864322100 0000 0000000000000
Q ss_pred ----HhCCCCCCCcChhhhHHHHHHH----HcCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEcccc-chhhc
Q 035646 255 ----LLKLPNNGIWNVYDGINIIGRR----LRHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSRIVITSRDK-HLLMM 323 (584)
Q Consensus 255 ----l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~ 323 (584)
+...........+.....+... ..+++-++|+|+++.. .....|+..+......+++|++|.+. .+...
T Consensus 86 ~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 86 RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred CccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 0000000000111111111110 1246679999999753 33555555444334566677666543 22211
Q ss_pred -cccceEeecCCCCHHHHHHHhc
Q 035646 324 -HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 -~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+....+.+.+++.++..+.+.
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~ 188 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLA 188 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHH
Confidence 1233567888999999888876
No 44
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=5.2e-05 Score=79.87 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=90.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+........ .. +........+.......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~-~p----Cg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN-EP----CNECTSCLEITKGISSD 91 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc-cc----cCCCcHHHHHHccCCcc
Confidence 567999999999999887543 2356899999999999999999987543211000 00 00000001111000000
Q ss_pred HhC---CCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccc-cchhhc-ccc
Q 035646 255 LLK---LPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRD-KHLLMM-HGV 326 (584)
Q Consensus 255 l~~---~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~ 326 (584)
+.. ......++..+....+... ..++.-++|+|+++ +.+.++.|+..+........+|++|.+ ..+... ...
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 000 0000011111111111111 23566799999997 455677777666544455555544443 333222 223
Q ss_pred ceEeecCCCCHHHHHHHhc
Q 035646 327 DEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~ 345 (584)
...|.+.+++.++..+.+.
T Consensus 172 Cq~~~f~~ls~~~i~~~L~ 190 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSE 190 (484)
T ss_pred hheeeecCCCHHHHHHHHH
Confidence 4578999999998888776
No 45
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.23 E-value=6.5e-05 Score=76.77 Aligned_cols=151 Identities=12% Similarity=0.179 Sum_probs=85.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|++..++.+..++..+. .+.+.|+|.+|+||||+|+.+++..........++. +. .+...+... ....+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~~-~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGIDV-IRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchHH-HHHHHHH
Confidence 568999999999999987543 345799999999999999999987533211111221 10 111111111 1111111
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEccccc-hhhc-cccceEe
Q 035646 255 LLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSRIVITSRDKH-LLMM-HGVDEIY 330 (584)
Q Consensus 255 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~ 330 (584)
+...... ....+-++++|+++.. +....+...+....+.+.+|+++.... .... ......+
T Consensus 92 ~~~~~~~---------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 92 FARTAPV---------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHhcCCC---------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 1110000 0123568999999643 334444444443445667777664332 1111 1123468
Q ss_pred ecCCCCHHHHHHHhc
Q 035646 331 NLRELHDDKALQLFC 345 (584)
Q Consensus 331 ~l~~L~~~ea~~Lf~ 345 (584)
++.+++.++....+.
T Consensus 157 ~~~~l~~~ei~~~l~ 171 (319)
T PRK00440 157 RFSPLKKEAVAERLR 171 (319)
T ss_pred eeCCCCHHHHHHHHH
Confidence 899999999887776
No 46
>PRK08727 hypothetical protein; Validated
Probab=98.22 E-value=2.8e-05 Score=75.60 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=78.4
Q ss_pred cccccchh-hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHH
Q 035646 175 EHLVGIDS-HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 175 ~~~vGR~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
++|++... .+..+..+.. + .....+.|+|.+|+|||.|+..+++........+.|+. .. +....+..
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~------~~~~~~~~ 86 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQ------AAAGRLRD 86 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HH------HhhhhHHH
Confidence 34554443 3443333332 1 12356999999999999999999987655544556664 11 11111100
Q ss_pred HHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEEEccccch--------
Q 035646 254 QLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI----KQLECLAGKREW-FGPGSRIVITSRDKHL-------- 320 (584)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~v-------- 320 (584)
..+.+ .+.-+||+||++.. ..-..++..+.. ...|..||+||+...-
T Consensus 87 -------------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 87 -------------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred -------------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 11112 23458999999632 211222222111 1346679999986422
Q ss_pred -hhccccceEeecCCCCHHHHHHHhc
Q 035646 321 -LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 -~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.........+++++++.++-.+++.
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHH
Confidence 1122234578999999999998887
No 47
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=2.2e-05 Score=75.36 Aligned_cols=155 Identities=22% Similarity=0.267 Sum_probs=84.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccc--eEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEA--SSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR 275 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 275 (584)
...+.|+|..|+|||.|..++++.+....+. +.++. ..++...+...+.. .....+++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~----------~~~~~~~~ 93 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD----------GEIEEFKD 93 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT----------TSHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc----------ccchhhhh
Confidence 4568899999999999999999987654442 34443 23444444444322 11233555
Q ss_pred HHcCCCcEEEEeCCCCH---HHH-HHHhcCCCC-CCCCcEEEEEccccch-h--------hccccceEeecCCCCHHHHH
Q 035646 276 RLRHKKVLLIIDDVVDI---KQL-ECLAGKREW-FGPGSRIVITSRDKHL-L--------MMHGVDEIYNLRELHDDKAL 341 (584)
Q Consensus 276 ~L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~~v-~--------~~~~~~~~~~l~~L~~~ea~ 341 (584)
.++ .-=+|++||++.. ..+ +.+...+.. ...|.+||+|++.... + ......-++++.+++.++-.
T Consensus 94 ~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 94 RLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp HHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred hhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 555 3457889999532 222 122211111 1346789999965422 1 12223457899999999999
Q ss_pred HHhc------CCchhHHHhhhhhhC--CCHHHHHHHHHHH
Q 035646 342 QLFC------GLPLALKVLGSFLYG--KTTKEWESALKRL 373 (584)
Q Consensus 342 ~Lf~------G~PLal~~~~~~L~~--~~~~~w~~~l~~l 373 (584)
+++. |+++.-.++--+... ++..+.+.+++++
T Consensus 173 ~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 173 RILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 9887 666554443333322 3455555555543
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=0.0001 Score=79.42 Aligned_cols=158 Identities=11% Similarity=0.087 Sum_probs=91.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc--cccceEEEEechh-hc--ccCChHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH--NFEASSCLANVRE-IS--EEGGLTSLQN 249 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~w~~~~~~-~s--~~~~~~~~~~ 249 (584)
..++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .++..+|.+.... +. ...++..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e--- 89 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE--- 89 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE---
Confidence 567999999999988887543 2466799999999999999999987642 2222333321000 00 0000000
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccc-cchh
Q 035646 250 QLLSQLLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRD-KHLL 321 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~ 321 (584)
+... .....+. +..+.+.+ .+++-++|+|+++. ...+..++..+....+.+.+|++|.. ..+.
T Consensus 90 -----l~~~---~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 90 -----IDAA---SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred -----eccc---ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 0000 0001111 12222222 24566999999974 45566776666544455565655543 3332
Q ss_pred hc-cccceEeecCCCCHHHHHHHhc
Q 035646 322 MM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 322 ~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.. ......+++.+++.++..+.+.
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~ 185 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLR 185 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHH
Confidence 22 2234678999999999998886
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=0.00014 Score=77.73 Aligned_cols=143 Identities=18% Similarity=0.185 Sum_probs=84.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc----cc-----------------ceEEEE
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN----FE-----------------ASSCLA 233 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~w~~ 233 (584)
..++|.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... +. ....+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 568999988888888877442 23568899999999999999999865321 00 011111
Q ss_pred echhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-----HcCCCcEEEEeCCCCH--HHHHHHhcCCCCCC
Q 035646 234 NVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR-----LRHKKVLLIIDDVVDI--KQLECLAGKREWFG 306 (584)
Q Consensus 234 ~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 306 (584)
.+...++.. +..+.+. ..+++-++|+|+++.. +..+.++..+....
T Consensus 93 ----aa~~~gid~-----------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 93 ----AASNRGIDE-----------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 145 (472)
T ss_pred ----CcccCCHHH-----------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC
Confidence 000111111 1112222 1245679999999743 44566665555434
Q ss_pred CCcEEEEEcccc-chhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 307 PGSRIVITSRDK-HLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 ~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+...+|++|.+. .+... ......+++.+++.++....+.
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~ 186 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQ 186 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHH
Confidence 445544444332 22221 2234678999999999888776
No 50
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=3.1e-05 Score=80.71 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=89.4
Q ss_pred cccccchhhHHHHHHHhhhcCC--------ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECN--------VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
+.++|.+..++.|.+.+..+.. -.+.+.++|++|+|||++|..++..+-..... .-. . +.-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~----C----g~C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPG----C----GECR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCC----C----CCCH
Confidence 4688999999999999986531 25678899999999999999999865332210 000 0 0000
Q ss_pred HHHHHHHHHhCCCCCC---------CcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcE
Q 035646 247 LQNQLLSQLLKLPNNG---------IWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSR 310 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~---------~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ 310 (584)
....+. ....++ .-..++ ++.+.+.+ .+++-++|+|+++. ......++..+....+++.
T Consensus 75 ~C~~~~----~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 75 ACRTVL----AGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTV 149 (394)
T ss_pred HHHHHh----cCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCe
Confidence 000000 000000 001111 11222222 23455889999974 4445556655554456676
Q ss_pred EEEEcccc-chhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 311 IVITSRDK-HLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 311 IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+|++|.+. .+... ......+.+.+++.++..+.+.
T Consensus 150 fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence 66666554 33322 2234688999999999998885
No 51
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=1e-05 Score=90.40 Aligned_cols=139 Identities=27% Similarity=0.372 Sum_probs=82.1
Q ss_pred cccccchhhHH---HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLK---NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
+.|+|.+..+. .+.+.+..+ ....+.|+|++|+||||||+.+++.....|. .+. .+ ..++..+ .
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln----a~-~~~i~di-r-- 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN----AV-LAGVKDL-R-- 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh----hh-hhhhHHH-H--
Confidence 56789888774 466666533 4556789999999999999999987665542 111 00 0111110 1
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHH--cCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEE--Eccccch--hh-
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRL--RHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVI--TSRDKHL--LM- 322 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v--~~- 322 (584)
.......+.+ .+++.+||||+++ +..+.+.+++.+. .|..++| ||.+... ..
T Consensus 95 ----------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 95 ----------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred ----------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 1111111112 2467799999996 4555666665543 4555555 3444311 11
Q ss_pred ccccceEeecCCCCHHHHHHHhc
Q 035646 323 MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.......+.+++|+.++...++.
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~ 178 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLK 178 (725)
T ss_pred hhccccceecCCCCHHHHHHHHH
Confidence 11123578999999999988886
No 52
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00014 Score=75.22 Aligned_cols=168 Identities=14% Similarity=0.032 Sum_probs=93.4
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc--cceEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF--EASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|.+...+.|.+.+..+. -.....++|+.|+||+++|..+++.+-.+- .....-...... ...+.-.....+.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l-~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL-AIDPDHPVARRIA 96 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc-cCCCCChHHHHHH
Confidence 678999999999999887542 246788999999999999999998653211 100000000000 0000001111111
Q ss_pred HHHhC------CCCCCC-------cChhhhHHHHHHHHc-----CCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEE
Q 035646 253 SQLLK------LPNNGI-------WNVYDGINIIGRRLR-----HKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIV 312 (584)
Q Consensus 253 ~~l~~------~~~~~~-------~~~~~~~~~l~~~L~-----~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Ii 312 (584)
..-.. ....+. -..++ ++.+.+.+. +.+-++|+|+++ +......++..+....+++.+|
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 11000 000000 01111 223333332 467799999996 4555666665555445567677
Q ss_pred EEccccc-hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 313 ITSRDKH-LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 313 iTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
++|.+.. +... ......+.+.+++.++..+++.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALA 210 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHH
Confidence 7776653 3222 2234688999999999999987
No 53
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00014 Score=78.55 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=87.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc---------------------ccceEEEE
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN---------------------FEASSCLA 233 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~w~~ 233 (584)
..+||-+..++.|.+++..+. -.....++|+.|+||||+|+.+++.+-.. |+....+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 568999999999999997542 24577899999999999999999865321 11111111
Q ss_pred echhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEE
Q 035646 234 NVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRI 311 (584)
Q Consensus 234 ~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~I 311 (584)
.+...++.++ ++++..+.- .-..++.-++|+|+++. .+..+.++..+....+.+++
T Consensus 95 ----aas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 95 ----AASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred ----ccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 0011111111 111111000 00124566899999974 45566666655554566766
Q ss_pred EEEcccc-chhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 312 VITSRDK-HLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 312 iiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
|++|.+. .+... ......+++.+++.++..+.+.
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~ 188 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQ 188 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHH
Confidence 6655433 33221 1233567899999998776654
No 54
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=0.00021 Score=78.56 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=90.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..+||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-.... .. ....+.-.....+...
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCCCCCCHHHHHHHcC
Confidence 568999999999999887543 2456789999999999999999986543210 00 0000000111111100
Q ss_pred -------HhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccc-cchhhc
Q 035646 255 -------LLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRD-KHLLMM 323 (584)
Q Consensus 255 -------l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~ 323 (584)
+........++..+....+.. -..+++-++|+|+++ +....+.|+..+....+..++|++|.+ ..+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 000000001111111111111 123566799999996 455667776665544566666555544 433322
Q ss_pred -cccceEeecCCCCHHHHHHHhc
Q 035646 324 -HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 -~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
......+.+.+++.++..+.+.
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLE 188 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHH
Confidence 2235788999999999988876
No 55
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=0.00017 Score=78.08 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=86.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|++..++.+.+.+..+. ..+.+.++|+.|+||||+|+.+++.+...- |.. . ...+--.....+...
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~----~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-G----DCCNSCSVCESINTN 85 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-C----CCCcccHHHHHHHcC
Confidence 568999999999999886442 246788999999999999999998753211 110 0 000000011111000
Q ss_pred H----hCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEc-cccchhh
Q 035646 255 L----LKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITS-RDKHLLM 322 (584)
Q Consensus 255 l----~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~ 322 (584)
. ...........++ ++.+.+.. .+++-++|+|+++. ......|+..+......+.+|++| ....+..
T Consensus 86 ~h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 86 QSVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 0 0000000001111 11121111 13344799999964 455566665544334555555555 3333322
Q ss_pred c-cccceEeecCCCCHHHHHHHhc
Q 035646 323 M-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. ......+++.+++.++....+.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~ 188 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLK 188 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHH
Confidence 2 2234578999999999887776
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=4.4e-05 Score=77.84 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=93.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc-----cccceEEEEechhhcccCChHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH-----NFEASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-----~f~~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
..++|.+..++.+.+.+..+. -.+...++|+.|+||||+|..+++.+-. .++....+... ......+.+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHH-HH
Confidence 457899999999999987442 3567889999999999999999986422 12222222100 011111122 11
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccccchh-hc-cc
Q 035646 250 QLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDKHLL-MM-HG 325 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~ 325 (584)
++...+... -..+++-++|+|+++ +.+.++.++..+....+++.+|++|.+.... +. ..
T Consensus 80 ~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 NIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 222221100 012455577778774 5667888888877777888888888665432 21 22
Q ss_pred cceEeecCCCCHHHHHHHhc
Q 035646 326 VDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~ 345 (584)
....+++.+++.++....+.
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFIS 162 (313)
T ss_pred hceeeeCCCcCHHHHHHHHH
Confidence 34688999999999988776
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=3.3e-06 Score=63.32 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=47.9
Q ss_pred ccccEEEecCcc---CC-CCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 035646 521 INLRMLLIRNLQ---LP-EGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRI 576 (584)
Q Consensus 521 ~~LrvL~L~~~~---lp-~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i 576 (584)
++|+.|+|.+|+ +| ..+..++ +|++|+++++.++.+|+. | .+.+|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468999999985 45 4778888 999999999999999975 5 899999999999976
No 58
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00019 Score=81.37 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=89.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc-----cceEEEEechhhc----ccCChH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-----EASSCLANVREIS----EEGGLT 245 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~w~~~~~~~s----~~~~~~ 245 (584)
..+||.+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-... .+..+-.+. .+. ...++.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~-~~~~g~~~~~dv~ 92 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV-ALAPGGPGSLDVT 92 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH-HHHcCCCCCCcEE
Confidence 568999999999999998543 245688999999999999999998764321 111000000 000 000000
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHH-HHHcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEc-cccchh
Q 035646 246 SLQNQLLSQLLKLPNNGIWNVYDGINIIG-RRLRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITS-RDKHLL 321 (584)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~ 321 (584)
. +........++..++...+. .-..+++-++|||+++ +.+..+.|+..+......+.+|++| ....+.
T Consensus 93 e--------idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 93 E--------IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred E--------ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 0 00000000111111111111 1123556689999997 4455667766666555666666555 444444
Q ss_pred hc-cccceEeecCCCCHHHHHHHhc
Q 035646 322 MM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 322 ~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.. ......|++..++.++..+.+.
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~ 189 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLE 189 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHH
Confidence 32 2245688999999999887776
No 59
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00018 Score=76.66 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=88.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc---------------------cceEEEE
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF---------------------EASSCLA 233 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~w~~ 233 (584)
..+||.+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+-..+ ..+..++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 568999999999988887443 245889999999999999999997542211 1111111
Q ss_pred echhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcE
Q 035646 234 NVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSR 310 (584)
Q Consensus 234 ~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ 310 (584)
.+...++.+ .+.++.. .... ..+++-++|+|+++. .+..+.|+..+....+.++
T Consensus 92 ----aas~~~vdd-IR~Iie~------------------~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 92 ----AASNTSVDD-IKVILEN------------------SCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred ----cccCCCHHH-HHHHHHH------------------HHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 111111111 1111111 1000 124566899999963 4456666666655556776
Q ss_pred EEEEcc-ccchhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 311 IVITSR-DKHLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 311 IiiTTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+|++|. ...+... ......+++.+++.++..+.+.
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~ 185 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLV 185 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHH
Confidence 666553 3333322 2234678999999998888776
No 60
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.12 E-value=1.8e-05 Score=89.85 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=85.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-----c-cceEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-----F-EASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
+.++||+++++.+.+.|... ...-+.++|++|+|||++|+.+++++... + ...+|..+. ..+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~---------~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM---------GSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH---------HHHh
Confidence 57899999999999988744 23456799999999999999999976332 1 233443321 1111
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCH-----------HHHHHHhcCCCCCCCC-cEEEEEc
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDI-----------KQLECLAGKREWFGPG-SRIVITS 315 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-s~IiiTT 315 (584)
.. . ....+.+.....+.+.+ ..++.+|++|+++.. +.-+.+.+.+. .| -++|-+|
T Consensus 251 a~-------~--~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaT 318 (731)
T TIGR02639 251 AG-------T--KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGST 318 (731)
T ss_pred hh-------c--cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEec
Confidence 00 0 00112223333333333 346899999999522 12233334432 33 3444444
Q ss_pred cccchh-------hccccceEeecCCCCHHHHHHHhc
Q 035646 316 RDKHLL-------MMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 316 R~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...... ........+++.+++.++..+++.
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILK 355 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHH
Confidence 432110 011123578999999999999988
No 61
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.11 E-value=2.7e-05 Score=75.42 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=70.9
Q ss_pred ccchhh-HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHh
Q 035646 178 VGIDSH-LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLL 256 (584)
Q Consensus 178 vGR~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~ 256 (584)
.|...+ +..+.++.. +....+.+.|+|.+|+|||+||..+++.....-....++. ... ....+
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~----~~~------~~~~~----- 85 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD----AAS------PLLAF----- 85 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe----hHH------hHHHH-----
Confidence 355443 344444443 2223467899999999999999999986533322344443 111 00000
Q ss_pred CCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH--HHHHHHhcCCCCC-CCCc-EEEEEccccchhh--------cc
Q 035646 257 KLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI--KQLECLAGKREWF-GPGS-RIVITSRDKHLLM--------MH 324 (584)
Q Consensus 257 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v~~--------~~ 324 (584)
.. ....-+||+||++.. .....+...+... ..+. .+|+|++...... .+
T Consensus 86 ------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 01 123457999999632 2222332222111 2333 4677776543211 11
Q ss_pred ccceEeecCCCCHHHHHHHhc
Q 035646 325 GVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 325 ~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.....++++++++++-..++.
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALK 167 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHH
Confidence 223678999999987666554
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.11 E-value=2.9e-05 Score=73.03 Aligned_cols=141 Identities=22% Similarity=0.224 Sum_probs=75.2
Q ss_pred ccccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQ 250 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~ 250 (584)
-++|||.+..++.+.-++... .+....+.+||++|+||||||.-+++.....|. +.. . ..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s------g-~~i------ 86 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS------G-PAI------ 86 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE------C-CC-------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc------c-hhh------
Confidence 378999999999887666522 234678999999999999999999998877663 221 1 000
Q ss_pred HHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCC--CHHHHHHHhcCCCCC--------CC-----------Cc
Q 035646 251 LLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVV--DIKQLECLAGKREWF--------GP-----------GS 309 (584)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~--------~~-----------gs 309 (584)
....++...+. .+ +++-+|.+|.+. +..+-+.|.+...++ ++ -+
T Consensus 87 -------------~k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 87 -------------EKAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp --------------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -------------hhHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 00111111111 12 245678889995 344444443332211 11 23
Q ss_pred EEEEEccccchhhccc--cceEeecCCCCHHHHHHHhc
Q 035646 310 RIVITSRDKHLLMMHG--VDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 310 ~IiiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~ 345 (584)
-|=.|||...+..... ..-+.++...+.+|-.+++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~ 189 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVK 189 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHH
Confidence 3446888765543322 23455799999999998886
No 63
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.11 E-value=4.6e-06 Score=73.13 Aligned_cols=90 Identities=22% Similarity=0.387 Sum_probs=48.0
Q ss_pred eeEEEcCccCcccCc-hHHHHHHHHhhC-------CCcE----------EEeCCCCCCCCcccHHHHHHhhhcceEEEEe
Q 035646 19 YDVFLSFRGEDTRKN-FTDHLYSALDEK-------GIIV----------FRDDKELERGESISPGLFKAIEESKISIVVF 80 (584)
Q Consensus 19 ~dvFis~~~~D~~~~-~~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~ 80 (584)
|.|||||++.| .. ....|...+... .+.. +-+..+....+.|...|.+.|..|.++||++
T Consensus 1 ~~vFIS~~~~d--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi 78 (130)
T PF08937_consen 1 YKVFISYSHDD--DDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI 78 (130)
T ss_dssp ----------T--HH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred CCccccccccC--cHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence 57999999999 55 777777777763 2211 1122222234478899999999999999999
Q ss_pred ccCcccchhhHHHHHHHHHHhhcCCCcEEEeeeec
Q 035646 81 SRSYAFSTWCLDELVHILECKNTNNQQMVYPIFYD 115 (584)
Q Consensus 81 S~~y~~s~~c~~El~~~~~~~~~~~~~~v~Pvf~~ 115 (584)
|++-..|.|+.+|+..+++ .+ ..|+-|...
T Consensus 79 g~~T~~s~wV~~EI~~A~~----~~-~~Ii~V~~~ 108 (130)
T PF08937_consen 79 GPNTAKSKWVNWEIEYALK----KG-KPIIGVYLP 108 (130)
T ss_dssp -TT----HHHHHHHHHHTT----T----EEEEETT
T ss_pred CCCcccCcHHHHHHHHHHH----CC-CCEEEEECC
Confidence 9999999999999998776 22 456666443
No 64
>PRK05642 DNA replication initiation factor; Validated
Probab=98.11 E-value=5.9e-05 Score=73.31 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=70.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
...+.|+|..|+|||.|+..+++.....-..+.|+. . .++... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~------~~~~~~-------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----L------AELLDR-------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----H------HHHHhh-------------------hHHHHHhh
Confidence 367899999999999999999987654434556664 1 111110 01233333
Q ss_pred cCCCcEEEEeCCCCH---HHHH-HHhcCCCC-CCCCcEEEEEccccch-h--------hccccceEeecCCCCHHHHHHH
Q 035646 278 RHKKVLLIIDDVVDI---KQLE-CLAGKREW-FGPGSRIVITSRDKHL-L--------MMHGVDEIYNLRELHDDKALQL 343 (584)
Q Consensus 278 ~~k~~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~IiiTTR~~~v-~--------~~~~~~~~~~l~~L~~~ea~~L 343 (584)
++-. +||+||+... ..|+ .+...+.. ...|..+|+|++.... . ..+....++++.+++.++-.+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3332 6889999522 2322 23322211 1346778898875422 1 1122336788999999998888
Q ss_pred hc
Q 035646 344 FC 345 (584)
Q Consensus 344 f~ 345 (584)
+.
T Consensus 175 l~ 176 (234)
T PRK05642 175 LQ 176 (234)
T ss_pred HH
Confidence 76
No 65
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.11 E-value=7.3e-05 Score=78.37 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=87.0
Q ss_pred ccccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
...+.|+++.++++...+... -...+-|.++|++|+|||++|+.+++.....| +. ++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~----v~~-- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IR----VVG-- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EE----eeh--
Confidence 467889999999998876421 12356789999999999999999998765432 21 000
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCH-------------HH---HHHHhcCCCCC
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDI-------------KQ---LECLAGKREWF 305 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-------------~~---~~~l~~~~~~~ 305 (584)
.. +.....+ ........+.+.. ...+.+|+||+++.. +. +..++..+...
T Consensus 199 --~~----l~~~~~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 --SE----LVQKFIG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred --HH----HhHhhcc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 11 1111100 0111222222222 356789999999643 11 22233222211
Q ss_pred --CCCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 306 --GPGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 --~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||.||........ ......+++++.+.++-.++|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILK 312 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHH
Confidence 235567777765433221 1245678999999999999887
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.10 E-value=6.1e-05 Score=73.31 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=76.1
Q ss_pred cccccchh-hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHH
Q 035646 175 EHLVGIDS-HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 175 ~~~vGR~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
..++|-.. .+..+.++.... ..+.+.|+|++|+|||+|+..+++........+.++. +... .....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~---~~~~~---- 89 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKR---AWFVP---- 89 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHH---hhhhH----
Confidence 33446222 344444444322 3357899999999999999999987654433445554 1110 00000
Q ss_pred HHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH---HHHH-HHhcCCCCC-CCC-cEEEEEccccch-------
Q 035646 254 QLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI---KQLE-CLAGKREWF-GPG-SRIVITSRDKHL------- 320 (584)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~g-s~IiiTTR~~~v------- 320 (584)
.+.+.+.. --+|++||+... ..|+ .+...+... ..| .++|+||+....
T Consensus 90 ------------------~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 90 ------------------EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred ------------------HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 11111211 248999999532 2222 121111110 123 479999986522
Q ss_pred --hhccccceEeecCCCCHHHHHHHhc
Q 035646 321 --LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 --~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+....++++.+++.++-.+++.
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2223344688999999998888775
No 67
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.07 E-value=0.00041 Score=72.07 Aligned_cols=147 Identities=13% Similarity=0.161 Sum_probs=86.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc----cc-----------------ceEEEE
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN----FE-----------------ASSCLA 233 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~w~~ 233 (584)
..++|.+..++.+.+++..+. -.+.+.++|++|+|||++|+.++..+... +. ...++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 567999999999999887442 24678899999999999999999865322 10 011111
Q ss_pred echhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcE
Q 035646 234 NVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSR 310 (584)
Q Consensus 234 ~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 310 (584)
...... ......+... +... ..+++-++|+|+++.. .....++..+....+.+.
T Consensus 93 ----~~~~~~-~~~~~~l~~~------------------~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 93 ----AASNNG-VDDIREILDN------------------VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred ----ccccCC-HHHHHHHHHH------------------HhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 000000 0001111111 1100 1234568999999643 456666655544455666
Q ss_pred EEEEccccc-hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 311 IVITSRDKH-LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 311 IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+|++|.+.. +... ......+++.+++.++..+.+.
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~ 186 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLK 186 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHH
Confidence 666665443 2221 1233578889999999888876
No 68
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.05 E-value=3.2e-05 Score=76.67 Aligned_cols=148 Identities=11% Similarity=0.125 Sum_probs=77.4
Q ss_pred ccccchhhHHHHHHHhhh-------------cCCceEEEEEEecCCccHHHHHHHHHhhhccc--ccceEEEEechhhcc
Q 035646 176 HLVGIDSHLKNLRLLMDK-------------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN--FEASSCLANVREISE 240 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~w~~~~~~~s~ 240 (584)
.++|.+...++|.+.... ..+....+.++|++|+||||+|+.+++.+... .....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~ 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH
Confidence 467877776666543221 11235678899999999999999999864221 11112221 110
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc-CCCcEEEEeCCCC----------HHHHHHHhcCCCCCCCCc
Q 035646 241 EGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR-HKKVLLIIDDVVD----------IKQLECLAGKREWFGPGS 309 (584)
Q Consensus 241 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs 309 (584)
.+ +.....+. . ...+.+.++ ...-+|++|+++. .+..+.++..+.......
T Consensus 83 ----~~----l~~~~~g~-------~---~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 ----AD----LVGEYIGH-------T---AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred ----HH----hhhhhccc-------h---HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 11 11111110 0 111122221 1245899999964 234555665544333444
Q ss_pred EEEEEccccchhh--------ccccceEeecCCCCHHHHHHHhc
Q 035646 310 RIVITSRDKHLLM--------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 310 ~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+|+++.....-. .......+.+++++.++-.+++.
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHH
Confidence 5556554332200 01123567889999998888775
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=2.5e-06 Score=58.99 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.2
Q ss_pred CeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 543 ELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 543 ~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
+|++|++++++|+.+|..+ +|.+|++|+|++++|+.+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 7999999999999999988 99999999999999988764
No 70
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.04 E-value=0.00015 Score=74.02 Aligned_cols=145 Identities=13% Similarity=0.170 Sum_probs=83.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+...+.+..++..+. -..++.++|++|+|||++|+.+++.....+ ..+. .+. .....+ ...+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~----~~~-~~~~~i-~~~l~~ 90 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN----GSD-CRIDFV-RNRLTR 90 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec----cCc-ccHHHH-HHHHHH
Confidence 667999999999999987432 356788899999999999999998764322 2222 111 111111 111111
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEEEccccchh-h-ccccceE
Q 035646 255 LLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI---KQLECLAGKREWFGPGSRIVITSRDKHLL-M-MHGVDEI 329 (584)
Q Consensus 255 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~-~~~~~~~ 329 (584)
.... ..+.+.+-++|+|+++.. +....+...+.....++++|+||...... . .......
T Consensus 91 ~~~~----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 FAST----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHh----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1000 001234568999999744 22233333233335677888888654321 1 1122346
Q ss_pred eecCCCCHHHHHHHhc
Q 035646 330 YNLRELHDDKALQLFC 345 (584)
Q Consensus 330 ~~l~~L~~~ea~~Lf~ 345 (584)
+.++..+.++..+++.
T Consensus 155 i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 155 IDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 6777778877765543
No 71
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.04 E-value=6.2e-05 Score=86.50 Aligned_cols=149 Identities=8% Similarity=0.078 Sum_probs=85.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-c-----cceEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-F-----EASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
..++||+++++++.+.|.... ..-+.++|++|+|||++|..++.++... - ...+|..+.... +
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l---------~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL---------L 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH---------h
Confidence 568999999999999997442 3456799999999999999999876421 1 233443322110 0
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCHH---------HHHHH-hcCCCCCCCCcEEEEEccc
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDIK---------QLECL-AGKREWFGPGSRIVITSRD 317 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~---------~~~~l-~~~~~~~~~gs~IiiTTR~ 317 (584)
.+.. ...+.+.....+.+.+ ..++.+|++|++...- +...+ .+.+. ...-++|.+|..
T Consensus 248 -------ag~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~ 316 (821)
T CHL00095 248 -------AGTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL 316 (821)
T ss_pred -------ccCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence 0111 1112233333333333 3568999999994211 12222 23322 123455555554
Q ss_pred cchhh-------ccccceEeecCCCCHHHHHHHhc
Q 035646 318 KHLLM-------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 318 ~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..... .......+.+.+.+.++...++.
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr 351 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILF 351 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHH
Confidence 33211 11233567889999999888876
No 72
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=0.00011 Score=71.00 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=65.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
.+.+.|+|.+|+|||+|++.++..... .++. . ..+...++.. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-----~~i~----~------~~~~~~~~~~----------------------~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-----LLIH----P------NEIGSDAANA----------------------A 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-----EEec----H------HHcchHHHHh----------------------h
Confidence 357899999999999999998875422 2443 0 0111111111 1
Q ss_pred cCCCcEEEEeCCCC----HHHHHHHhcCCCCCCCCcEEEEEcccc---------chhhccccceEeecCCCCHHHHHHHh
Q 035646 278 RHKKVLLIIDDVVD----IKQLECLAGKREWFGPGSRIVITSRDK---------HLLMMHGVDEIYNLRELHDDKALQLF 344 (584)
Q Consensus 278 ~~k~~LlVlDdv~~----~~~~~~l~~~~~~~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 344 (584)
.+ -+|++||++. .+.+-.+..... ..|..||+|++.. .....+....++++++++.++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 11 2788999953 233333332222 3467799988743 22333344578999999999999888
Q ss_pred c
Q 035646 345 C 345 (584)
Q Consensus 345 ~ 345 (584)
.
T Consensus 163 ~ 163 (226)
T PRK09087 163 F 163 (226)
T ss_pred H
Confidence 7
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.01 E-value=7e-05 Score=85.79 Aligned_cols=149 Identities=9% Similarity=0.079 Sum_probs=85.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc------cceEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF------EASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
..++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++++.... ...+|..+...+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag------- 257 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG------- 257 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc-------
Confidence 678999999999999887442 34567999999999999999999764331 122333222111000
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH--cCCCcEEEEeCCCCHH---------HHH-HHhcCCCCCCCCcEEEEEcc
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRL--RHKKVLLIIDDVVDIK---------QLE-CLAGKREWFGPGSRIVITSR 316 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~---------~~~-~l~~~~~~~~~gs~IiiTTR 316 (584)
.....+.+.....+.+.+ .+++.+|++|++.... +.. .+.+.+. ...-++|-||.
T Consensus 258 -----------~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT 324 (852)
T TIGR03345 258 -----------ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATT 324 (852)
T ss_pred -----------cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecC
Confidence 001111112222222222 2468999999985321 111 2334432 22345555555
Q ss_pred ccchhh-------ccccceEeecCCCCHHHHHHHhc
Q 035646 317 DKHLLM-------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 317 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...... .......+.+++++.+++.+++.
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLR 360 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHH
Confidence 432111 11133588999999999999976
No 74
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00036 Score=75.89 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=86.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-..... . ....+.-.....+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~----~-----~~pcg~C~~C~~i~~~ 85 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGV----T-----ATPCGVCSACLEIDSG 85 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC----C-----CCCCCCCHHHHHHhcC
Confidence 567999999999999887442 24567899999999999999999865332100 0 0000000000000000
Q ss_pred ----HhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccc-cchhh
Q 035646 255 ----LLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRD-KHLLM 322 (584)
Q Consensus 255 ----l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~ 322 (584)
+...........++. +.+.... .+++-++|+|+++. .+..+.++..+......+.+|++|.+ ..+..
T Consensus 86 ~~~d~~ei~~~~~~~vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~ 164 (527)
T PRK14969 86 RFVDLIEVDAASNTQVDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164 (527)
T ss_pred CCCceeEeeccccCCHHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence 000000000011111 1111111 24566999999974 34466666665544556666655543 33322
Q ss_pred c-cccceEeecCCCCHHHHHHHhc
Q 035646 323 M-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. ......+++.+++.++..+.+.
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~ 188 (527)
T PRK14969 165 TVLSRCLQFNLKQMPPPLIVSHLQ 188 (527)
T ss_pred hHHHHHHHHhcCCCCHHHHHHHHH
Confidence 1 1223578899999998887665
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00043 Score=74.35 Aligned_cols=162 Identities=18% Similarity=0.155 Sum_probs=90.0
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccccc--c-eEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE--A-SSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.... . ..+.. .+.-.....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~--------C~~C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT--------CEQCTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC--------CCCChHHHHH
Confidence 567999999999988776442 2467889999999999999999986533210 0 00000 0000000000
Q ss_pred HHH----HhCCCCCCCcChhhhHHHHHHH----HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEE-Eccccch
Q 035646 252 LSQ----LLKLPNNGIWNVYDGINIIGRR----LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVI-TSRDKHL 320 (584)
Q Consensus 252 ~~~----l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v 320 (584)
... +..-........++....+... ..+++-++|+|+++. ...++.++..+....+.+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 000 0000000001111111111111 235677899999975 4557777766554455666554 5554444
Q ss_pred hhcc-ccceEeecCCCCHHHHHHHhc
Q 035646 321 LMMH-GVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ~~~~-~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.... .....+++.+++.++..+.+.
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~ 197 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLE 197 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHH
Confidence 3322 234578999999999998887
No 76
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.98 E-value=8.1e-06 Score=79.58 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=58.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc-cccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcCh-----hhhHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH-NFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNV-----YDGIN 271 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~ 271 (584)
...++|.|++|+|||||++.+++.... +|+..+|+..+. .+..++.++++.+...+........... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~--er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLID--ERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEcc--CCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999997644 688888987332 1236788888887433322222111111 11122
Q ss_pred HHHHH-HcCCCcEEEEeCCCC
Q 035646 272 IIGRR-LRHKKVLLIIDDVVD 291 (584)
Q Consensus 272 ~l~~~-L~~k~~LlVlDdv~~ 291 (584)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 247899999999953
No 77
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00048 Score=75.61 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=90.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccce----EEEEechhhcccCChHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEAS----SCLANVREISEEGGLTSLQNQ 250 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~----~w~~~~~~~s~~~~~~~~~~~ 250 (584)
..++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-...... .+-. .+.-.....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~--------cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL--------CGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc--------CcccHHHHH
Confidence 668999999999999987543 245788999999999999999998764332100 0000 000001111
Q ss_pred HHHHHhCCCCCC--------CcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEc
Q 035646 251 LLSQLLKLPNNG--------IWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITS 315 (584)
Q Consensus 251 i~~~l~~~~~~~--------~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT 315 (584)
+. .....+ ....++ ++.+.+.+ .+++-++|+|+++. ....+.|+..+....+++.+|++|
T Consensus 95 i~----~g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 95 IM----EGRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred Hh----cCCCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 11 111110 011111 11122222 24556899999964 445666666655545667665544
Q ss_pred -cccchhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 316 -RDKHLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 316 -R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
....+... ......+++.+++.++..+.+.
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLS 201 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 44433322 1234678999999999888877
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00094 Score=72.97 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=89.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+..++.|.+++..+. -.....++|+.|+||||+|+.+++.+-...... +-. .+.-.....+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~p--------Cg~C~~C~~i~~~ 82 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATP--------CGVCESCVALAPN 82 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCc--------ccccHHHHHhhcc
Confidence 568999999999999997542 245678999999999999999998654321000 000 0000000011000
Q ss_pred ---------HhCCCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEc-cccchh
Q 035646 255 ---------LLKLPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITS-RDKHLL 321 (584)
Q Consensus 255 ---------l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~ 321 (584)
+........++..+....+... ..+++-++|+|+++ +....+.|+..+......+.+|++| ....+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0000000111111111111111 12456689999996 4556667766666555566655544 444443
Q ss_pred hc-cccceEeecCCCCHHHHHHHhc
Q 035646 322 MM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 322 ~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.. ......+++.+++.++..+.+.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~ 187 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIA 187 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHH
Confidence 22 2234678999999999887775
No 79
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.94 E-value=0.00023 Score=66.79 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEcccc-chhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 279 HKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDK-HLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 279 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+.+-++|+||++. .+..+.++..+....+.+.+|++|++. .+... ......+++.+++.++..+.+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~ 165 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLI 165 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHH
Confidence 4566899999964 444666666665555667777777654 22111 1233678999999998887775
No 80
>PF14516 AAA_35: AAA-like domain
Probab=97.94 E-value=0.0026 Score=65.19 Aligned_cols=184 Identities=11% Similarity=0.073 Sum_probs=105.6
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcc--cCChHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISE--EGGLTSLQNQL 251 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~--~~~~~~~~~~i 251 (584)
++.+|+|...-+++.+.+..+ ...+.|.|+-.+|||+|...+.+.....--..++++ ...+.. ..+....+..+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHH
Confidence 366789996666666666532 258999999999999999999987755423344554 322222 24556566555
Q ss_pred HHHHhCCCCCC----------CcChhhhHHHHHHHH---cCCCcEEEEeCCCCHHH----HHHHhcCCC-------CCC-
Q 035646 252 LSQLLKLPNNG----------IWNVYDGINIIGRRL---RHKKVLLIIDDVVDIKQ----LECLAGKRE-------WFG- 306 (584)
Q Consensus 252 ~~~l~~~~~~~----------~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~~----~~~l~~~~~-------~~~- 306 (584)
+..+...-... ..........+.+.+ .+++.+|+||+++..-. ..+++..+. ...
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 55543221111 112222333444433 25899999999964321 122221110 000
Q ss_pred CCc--EEEEEccccchh-h----ccccceEeecCCCCHHHHHHHhc-------------------CCchhHHHhhhhhhC
Q 035646 307 PGS--RIVITSRDKHLL-M----MHGVDEIYNLRELHDDKALQLFC-------------------GLPLALKVLGSFLYG 360 (584)
Q Consensus 307 ~gs--~IiiTTR~~~v~-~----~~~~~~~~~l~~L~~~ea~~Lf~-------------------G~PLal~~~~~~L~~ 360 (584)
... -|++.+...... . .......+.|++++.+|...|+. |+|.-+..++..+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 122222111111 1 12234578999999999999988 999999999988866
Q ss_pred C
Q 035646 361 K 361 (584)
Q Consensus 361 ~ 361 (584)
.
T Consensus 246 ~ 246 (331)
T PF14516_consen 246 E 246 (331)
T ss_pred c
Confidence 3
No 81
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.94 E-value=7.9e-05 Score=79.66 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=86.5
Q ss_pred cccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccc-----cceEEEEechhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-----EASSCLANVREI 238 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~w~~~~~~~ 238 (584)
..+.|.+..++++...+... -...+-+.++|++|+|||++|+.+++.....+ ....|+. +
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v--- 257 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I--- 257 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c---
Confidence 45778999999998876421 12346789999999999999999999765442 1233332 1
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-----HcCCCcEEEEeCCCCHH---------H-----HHHHh
Q 035646 239 SEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR-----LRHKKVLLIIDDVVDIK---------Q-----LECLA 299 (584)
Q Consensus 239 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~~---------~-----~~~l~ 299 (584)
... .++.... ...+.....+.+. ..+++++++||+++... + +..++
T Consensus 258 ~~~--------eLl~kyv-------Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 258 KGP--------ELLNKYV-------GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred cch--------hhccccc-------chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 110 0111000 0011111112111 13579999999996321 1 22333
Q ss_pred cCCCCCC--CCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 300 GKREWFG--PGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 300 ~~~~~~~--~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+.... .+..||.||....... ....+..++++..+.++..++|.
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFS 375 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHH
Confidence 3332211 3445566665443321 12345678999999999999997
No 82
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.93 E-value=0.00035 Score=67.92 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..+.++...-..+...+.++|.+|+|||+||..+++........+.++.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 33444444322222457899999999999999999997655544455553
No 83
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.91 E-value=0.00015 Score=83.45 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=40.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..++||+.+++++...|.... ..-+.++|.+|+|||+||+.++.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 568999999999999987442 345679999999999999999997643
No 84
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.91 E-value=0.00014 Score=81.96 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=85.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc------ccceEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN------FEASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
..++||+++++++.+.|.... ..-+.++|++|+|||++|+.+++++... .+..+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~~~-- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DIGS-- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cHHH--
Confidence 568999999999999887532 2345689999999999999999865322 12223321 1111
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCH----------HHHHH-HhcCCCCCCCCcEEEEEcc
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDI----------KQLEC-LAGKREWFGPGSRIVITSR 316 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~-l~~~~~~~~~gs~IiiTTR 316 (584)
++ .+. ....+.+.....+.+.+ +..+.+|++|+++.. .+... +.+.+. ...-+||-+|.
T Consensus 253 --ll---aG~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 253 --LL---AGT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred --Hh---ccc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 11 000 01112233333333333 356789999999532 12222 223322 12334454444
Q ss_pred ccchhh-------ccccceEeecCCCCHHHHHHHhc
Q 035646 317 DKHLLM-------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 317 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...... .......+.+++.+.+++.+++.
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~ 359 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHH
Confidence 332110 11123578999999999999998
No 85
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.90 E-value=1.3e-06 Score=77.41 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=65.2
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCc-----cCCCCccccccCeeEEEecCCCCCCCCCCC-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNL-----QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~-----~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~ 564 (584)
..+++.+.+.+. . +..+|.-|..+.-|.||||..+ .||..+.++. -||-|.|..+.++.||+.+ +|.
T Consensus 78 l~klr~lnvgmn----r--l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~-tlralyl~dndfe~lp~dvg~lt 150 (264)
T KOG0617|consen 78 LPKLRILNVGMN----R--LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT-TLRALYLGDNDFEILPPDVGKLT 150 (264)
T ss_pred chhhhheecchh----h--hhcCccccCCCchhhhhhccccccccccCCcchhHHH-HHHHHHhcCCCcccCChhhhhhc
Confidence 455555555443 2 2334588888999999998765 4777888887 7888888888888888888 888
Q ss_pred CceEEEcCCCCccccCCCC
Q 035646 565 KIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~~~ 583 (584)
+||.|.++++.+-.||+.+
T Consensus 151 ~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 151 NLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred ceeEEeeccCchhhCcHHH
Confidence 8888888888888888754
No 86
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=0.00018 Score=68.72 Aligned_cols=104 Identities=18% Similarity=0.058 Sum_probs=62.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
+.+.|||++|+|||+|++.+++.... .++. ..... . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~------~~~~~----~-------------------------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK------DIFFN----E-------------------------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc------hhhhc----h-------------------------hHH-
Confidence 67899999999999999998775432 2221 00000 0 011
Q ss_pred CCCcEEEEeCCCCHHH--HHHHhcCCCCCCCCcEEEEEccccchh-------hccccceEeecCCCCHHHHHHHhc
Q 035646 279 HKKVLLIIDDVVDIKQ--LECLAGKREWFGPGSRIVITSRDKHLL-------MMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 279 ~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IiiTTR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+..-+|++||++..++ +-.+...+. ..|..||+|++..... ..+...-++++++++.++-.+++.
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 1235788999964322 222222221 3466899998755331 112233478999999998777775
No 87
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.87 E-value=0.00014 Score=63.62 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=21.2
Q ss_pred EEEEecCCccHHHHHHHHHhhhc
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 88
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.87 E-value=6.9e-05 Score=74.90 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=103.6
Q ss_pred ccccccchhhHHHHHHHhhhcCCc-eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNV-VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
.+.|.+|+.+++.+..++...+.. +..|.|+|.+|.|||.+.+++.+.... ..+|+. +-+.+....+...|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHHH
Confidence 467899999999999999866553 456689999999999999999987632 457887 345567778888888
Q ss_pred HHHhCCCCCCC------cChhhhHHHHHH--HHc--CCCcEEEEeCCCCHHHHH-----HHhcCCCCCCCCcEEEEEccc
Q 035646 253 SQLLKLPNNGI------WNVYDGINIIGR--RLR--HKKVLLIIDDVVDIKQLE-----CLAGKREWFGPGSRIVITSRD 317 (584)
Q Consensus 253 ~~l~~~~~~~~------~~~~~~~~~l~~--~L~--~k~~LlVlDdv~~~~~~~-----~l~~~~~~~~~gs~IiiTTR~ 317 (584)
.+....+.+.. .+..+.+..+.+ ... ++.++|||||++...+.+ .++....-.....-+|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 88642222211 112222333333 222 358999999997554422 222110001122334444433
Q ss_pred cch---hhccccc--eEeecCCCCHHHHHHHhc-CCc
Q 035646 318 KHL---LMMHGVD--EIYNLRELHDDKALQLFC-GLP 348 (584)
Q Consensus 318 ~~v---~~~~~~~--~~~~l~~L~~~ea~~Lf~-G~P 348 (584)
... ...+|.. .++..+.-+.+|..+++. ..|
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 221 1213333 356677899999999998 444
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.87 E-value=2.6e-05 Score=79.45 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=57.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc-cccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhh-----hHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH-NFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYD-----GIN 271 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~~ 271 (584)
....+|+|++|+||||||+++++.+.. +|+..+|+..+++ ....+.+++..+...+............. ..+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE--R~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC--chhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999997654 6999999984433 12266777777754332222222111111 111
Q ss_pred HHHHH-HcCCCcEEEEeCCC
Q 035646 272 IIGRR-LRHKKVLLIIDDVV 290 (584)
Q Consensus 272 ~l~~~-L~~k~~LlVlDdv~ 290 (584)
..... -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11122 25799999999994
No 90
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.00048 Score=73.32 Aligned_cols=128 Identities=20% Similarity=0.171 Sum_probs=74.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccccc--ceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFE--ASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR 275 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 275 (584)
...+.|+|.+|+|||+|+..+++.+...++ .+.|+. ..++...+...+... . ...+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~------~----~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG------K----LNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc------c----HHHHHH
Confidence 456999999999999999999998765543 234443 123444444443211 1 223444
Q ss_pred HHcCCCcEEEEeCCCCH---H-HHHHHhcCCCC-CCCCcEEEEEcc-ccchh--------hccccceEeecCCCCHHHHH
Q 035646 276 RLRHKKVLLIIDDVVDI---K-QLECLAGKREW-FGPGSRIVITSR-DKHLL--------MMHGVDEIYNLRELHDDKAL 341 (584)
Q Consensus 276 ~L~~k~~LlVlDdv~~~---~-~~~~l~~~~~~-~~~gs~IiiTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~ 341 (584)
..+...-+|++||+... . .-+.++..+.. ...|..||+||. .+.-+ ..+...-.+++++.+.+.-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 44445678999999632 1 11222221110 123456888875 33221 11223346788999988888
Q ss_pred HHhc
Q 035646 342 QLFC 345 (584)
Q Consensus 342 ~Lf~ 345 (584)
+++.
T Consensus 270 ~IL~ 273 (440)
T PRK14088 270 KIAR 273 (440)
T ss_pred HHHH
Confidence 8876
No 91
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.0021 Score=69.10 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=86.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-----ccceEEEEechhhcc--cCChHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-----FEASSCLANVREISE--EGGLTSL 247 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~w~~~~~~~s~--~~~~~~~ 247 (584)
..++|.+..++.|..++..+. -.+...++|+.|+||||+|+.++..+-.. .++..... ...+.. ..++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n-c~~i~~g~~~d~~e- 92 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN-CVEIDKGSFPDLIE- 92 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH-HHHHhcCCCCcEEE-
Confidence 567899999999999997542 24567889999999999999999865321 11111000 000000 000000
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEc-cccc
Q 035646 248 QNQLLSQLLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITS-RDKH 319 (584)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~ 319 (584)
+..... ...+ .++.+.+.. .+++-++|+|+++. .+..+.++..+....+...+|++| +...
T Consensus 93 -------idaas~---~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 93 -------IDAASN---RGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred -------EeCccC---CCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 000000 0011 112222222 34566999999964 345566665555444455555544 4333
Q ss_pred hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 320 LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+... ......+++.+++.++....+.
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~ 188 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLK 188 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHH
Confidence 3221 2234578999999999887776
No 92
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.86 E-value=0.00021 Score=82.54 Aligned_cols=149 Identities=8% Similarity=0.046 Sum_probs=84.6
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc------cceEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF------EASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
..++||+.+++++...|.... ..-+.++|++|+|||++|..+++++...+ ...+|..+.. .+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~---------~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG---------ALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH---------HHh
Confidence 568999999999999987543 34556899999999999999998764421 2233332111 110
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHc--CCCcEEEEeCCCCHH----------HHHHHhcCCCCCCCCcEEEEEcc
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRLR--HKKVLLIIDDVVDIK----------QLECLAGKREWFGPGSRIVITSR 316 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~IiiTTR 316 (584)
. +.. ...+.+.....+.+.+. +++.+|++|++...- ..+.+.+.+. ...-++|-+|.
T Consensus 242 a-------~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt 310 (852)
T TIGR03346 242 A-------GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATT 310 (852)
T ss_pred h-------cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCc
Confidence 0 000 01122222333333332 468999999996331 2223333321 12234454444
Q ss_pred ccchhh-------ccccceEeecCCCCHHHHHHHhc
Q 035646 317 DKHLLM-------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 317 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
....-. .......+.++..+.++..+++.
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~ 346 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILR 346 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHH
Confidence 332211 11122467899999999999887
No 93
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00056 Score=72.72 Aligned_cols=127 Identities=16% Similarity=0.050 Sum_probs=72.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
...+.|+|+.|+|||+|++.+++.+......+.++. ...+...+...+... ....++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~----------~~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG----------EMQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc----------hHHHHHHHc
Confidence 356889999999999999999997755434445553 122333343333110 112234333
Q ss_pred cCCCcEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEEEcccc-ch--------hhccccceEeecCCCCHHHHHHH
Q 035646 278 RHKKVLLIIDDVVDI----KQLECLAGKREW-FGPGSRIVITSRDK-HL--------LMMHGVDEIYNLRELHDDKALQL 343 (584)
Q Consensus 278 ~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~L 343 (584)
+ ..-+|++||+... ...+.+...+.. ...|..||+||... .. ...+.....+++.+++.++-.++
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 4558889999432 112222222110 12355788888543 21 12222336788999999999888
Q ss_pred hc
Q 035646 344 FC 345 (584)
Q Consensus 344 f~ 345 (584)
+.
T Consensus 280 L~ 281 (445)
T PRK12422 280 LE 281 (445)
T ss_pred HH
Confidence 87
No 94
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00042 Score=73.31 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=71.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccccc--ceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFE--ASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR 275 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 275 (584)
...+.|+|.+|+|||+|++++++.+....+ .+.++. ...+...+...+... ....+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~----------~~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN----------KMEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC----------CHHHHHH
Confidence 457899999999999999999998765543 233443 123333444443211 1223344
Q ss_pred HHcCCCcEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEEEcccc-ch--------hhccccceEeecCCCCHHHHH
Q 035646 276 RLRHKKVLLIIDDVVDI----KQLECLAGKREW-FGPGSRIVITSRDK-HL--------LMMHGVDEIYNLRELHDDKAL 341 (584)
Q Consensus 276 ~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~-~v--------~~~~~~~~~~~l~~L~~~ea~ 341 (584)
.+++ .-+|||||++.. ...+.+...+.. ...+..+|+||... .. ...+.....+++++.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 4433 348999999632 111222222111 12355678877643 11 112222346788899988888
Q ss_pred HHhc
Q 035646 342 QLFC 345 (584)
Q Consensus 342 ~Lf~ 345 (584)
+++.
T Consensus 275 ~il~ 278 (405)
T TIGR00362 275 AILQ 278 (405)
T ss_pred HHHH
Confidence 8776
No 95
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.0019 Score=71.61 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=88.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhh---cccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREI---SEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~---s~~~~~~~~~~~i 251 (584)
..++|.+..++.|...+..+. -.+...++|+.|+||||+|+.+++.+-..-....+-.+..+. ....++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv------- 89 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI------- 89 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE-------
Confidence 567899999999999997542 356778999999999999999998653211100000000000 000000
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEE-EEccccchhhc
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIV-ITSRDKHLLMM 323 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii-iTTR~~~v~~~ 323 (584)
...........++ ++.+.+.+ .+++-++|+|+++. ...+..|+..+......+.+| +|++...+...
T Consensus 90 ----ieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 90 ----IEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ----EEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000000000111 22222222 24666999999963 455666766555444555545 45444444322
Q ss_pred -cccceEeecCCCCHHHHHHHhc
Q 035646 324 -HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 -~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
......+++.+++.++..+.+.
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~ 187 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLE 187 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHH
Confidence 2234688999999999887775
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.002 Score=70.39 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=87.6
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-...... ....+.-.....+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~i~~- 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRKVTQ- 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHHHhc-
Confidence 567898888888888887442 246788999999999999999998654321000 000000001111110
Q ss_pred HhCCCCCC--------CcChhhhHHHHHHH-----HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccc-c
Q 035646 255 LLKLPNNG--------IWNVYDGINIIGRR-----LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRD-K 318 (584)
Q Consensus 255 l~~~~~~~--------~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~ 318 (584)
....+ ....++ ++.+.+. ..+++-++|+|+++. .+....|+..+........+|++|.+ .
T Consensus 85 ---g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 85 ---GMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred ---CCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 00000 000111 1112222 235667999999964 45566666665543455556665544 3
Q ss_pred chhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 319 HLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 319 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+... ......+++.+++.++..+.+.
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~ 188 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLT 188 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHH
Confidence 33322 1223578899999999987776
No 97
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=0.00072 Score=70.74 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=86.2
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.+..+++|.+.+.. +-...+-+.++|++|+|||+||+.+++.....| +.+. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~------~--- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV------G--- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe------h---
Confidence 5678999999888876641 112357899999999999999999998765443 1111 0
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH-------------H---HHHHHhcCCCC--C
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI-------------K---QLECLAGKREW--F 305 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~---~~~~l~~~~~~--~ 305 (584)
.. +.....+. ........+.......+.+|++|+++.. + .+..++..+.. .
T Consensus 213 -s~----l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 -SE----FVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred -HH----HHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 01 11111110 0111112222333567899999998532 0 12233322221 1
Q ss_pred CCCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||+||........ ......++++..+.++-.++|.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHH
Confidence 245678888876543321 2345678898888888877776
No 98
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.79 E-value=0.00028 Score=69.53 Aligned_cols=112 Identities=18% Similarity=0.117 Sum_probs=76.1
Q ss_pred cccccchh---hHHHHHHHhhhcCC-ceEEEEEEecCCccHHHHHHHHHhhhccccc------ceEEEEechhhcccCCh
Q 035646 175 EHLVGIDS---HLKNLRLLMDKECN-VVCMIGICVMGGIGKTTLAGVVYDLTSHNFE------ASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~---~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~w~~~~~~~s~~~~~ 244 (584)
+.+||-.. .++.|.+++..+.. ..+-+.|+|.+|+|||++++.|...+...++ .++.+. ....++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 55666543 35666777764432 3577999999999999999999986543332 233333 5678899
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcC-CCcEEEEeCCCC
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRH-KKVLLIIDDVVD 291 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 291 (584)
..+...|+..+... .................++. +--+||+|.+.+
T Consensus 110 ~~~Y~~IL~~lgaP-~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 110 RRFYSAILEALGAP-YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHHHhCcc-cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99999999996543 33344455555555566654 556899999954
No 99
>PRK08116 hypothetical protein; Validated
Probab=97.79 E-value=0.00013 Score=72.27 Aligned_cols=102 Identities=22% Similarity=0.166 Sum_probs=57.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
..+.|+|.+|+|||.||.++++.+..+...++++. ...++..+....... . ......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~---~----~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS---G----KEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc---c----cccHHHHHHHhc
Confidence 45889999999999999999998765534445553 233444443332111 0 111222444455
Q ss_pred CCCcEEEEeCCC--CHHH--HHHHhcCCCC-CCCCcEEEEEcccc
Q 035646 279 HKKVLLIIDDVV--DIKQ--LECLAGKREW-FGPGSRIVITSRDK 318 (584)
Q Consensus 279 ~k~~LlVlDdv~--~~~~--~~~l~~~~~~-~~~gs~IiiTTR~~ 318 (584)
+-. ||||||+. .... .+.+...+.. ...+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999993 2222 2223222211 13456799999754
No 100
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.79 E-value=0.00056 Score=73.39 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=82.0
Q ss_pred cccccchhh--HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccc--eEEEEechhhcccCChHHHHHH
Q 035646 175 EHLVGIDSH--LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEA--SSCLANVREISEEGGLTSLQNQ 250 (584)
Q Consensus 175 ~~~vGR~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~s~~~~~~~~~~~ 250 (584)
..++|.... .....++..........+.|+|.+|+|||+|+..+++.+...++. +.++. ...+...
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~ 192 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTND 192 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHH
Confidence 334565443 223333333222234678999999999999999999987766533 33443 1223333
Q ss_pred HHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEEEccccc-h----
Q 035646 251 LLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI----KQLECLAGKREW-FGPGSRIVITSRDKH-L---- 320 (584)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~-v---- 320 (584)
+...+... ....+.+.++ +.-+|||||++.. ...+.++..+.. ...|..||+||.... .
T Consensus 193 ~~~~~~~~----------~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 193 FVNALRNN----------TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred HHHHHHcC----------cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 33333110 1223444444 3558999999532 112223221111 123456888876542 1
Q ss_pred ----hhccccceEeecCCCCHHHHHHHhc
Q 035646 321 ----LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ----~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+.....+++++.+.++-.+++.
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 1222333578899999999888887
No 101
>PRK12377 putative replication protein; Provisional
Probab=97.78 E-value=0.00075 Score=65.76 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=29.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
...+.|+|.+|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998766544556654
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.001 Score=69.51 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=85.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc--------ccceEEEEechhhcccCChHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN--------FEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~w~~~~~~~s~~~~~~~ 246 (584)
..++|.+..++.+.+.+..+. -.+.+.++|++|+|||++|..+++.+... |.....- .. .....+. +
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~-~~~~~~~-~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LD-AASNNSV-D 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ec-cccCCCH-H
Confidence 567999999999999987542 34688899999999999999998865431 1111110 00 0000111 1
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEc-cccchhhc
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITS-RDKHLLMM 323 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v~~~ 323 (584)
....++..+... -..+++-++|+|+++. ...++.+...+......+.+|++| ....+...
T Consensus 92 ~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 DIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111111111000 0123556899999964 344566654443334455555554 33333221
Q ss_pred -cccceEeecCCCCHHHHHHHhc
Q 035646 324 -HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 -~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
......+++.+++.++....+.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHH
Confidence 2233578999999999887776
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.0005 Score=73.31 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=82.9
Q ss_pred cccccchhh--HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccccc--ceEEEEechhhcccCChHHHHHH
Q 035646 175 EHLVGIDSH--LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE--ASSCLANVREISEEGGLTSLQNQ 250 (584)
Q Consensus 175 ~~~vGR~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~s~~~~~~~~~~~ 250 (584)
..++|.... .....++...+......+.|+|..|+|||+|+.++++.+....+ .++++. ...+...
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~ 185 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARK 185 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHH
Confidence 444565443 22223333322222456899999999999999999996644322 233332 2344455
Q ss_pred HHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEEEccccc-h----
Q 035646 251 LLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI----KQLECLAGKREW-FGPGSRIVITSRDKH-L---- 320 (584)
Q Consensus 251 i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~-v---- 320 (584)
+...+... ......+++.++ ..-+||+||+... ...+.+...+.. ...|..||+|+.... .
T Consensus 186 ~~~~l~~~--------~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l 256 (450)
T PRK14087 186 AVDILQKT--------HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGF 256 (450)
T ss_pred HHHHHHHh--------hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhc
Confidence 55443211 012233444444 3458899999532 222333322211 134556888876442 1
Q ss_pred ----hhccccceEeecCCCCHHHHHHHhc
Q 035646 321 ----LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ----~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+...-++++++++.++-.+++.
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 1122233567899999999999886
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0002 Score=75.36 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=89.0
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc--ccceEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN--FEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|.+..++.|.+++..+. -...+.++|+.|+||||+|..+++.+... ++...|.... ....+.-.....+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~~~~ 91 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCRDFD 91 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHHHHh
Confidence 568899999999999887543 24568899999999999999999876432 1111111000 00000000111111
Q ss_pred HHHhC----CCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEc-cccch
Q 035646 253 SQLLK----LPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITS-RDKHL 320 (584)
Q Consensus 253 ~~l~~----~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~~v 320 (584)
..... -........++ +..+.+.+ .+++-++|+|+++. ...++.++..+....+.+.+|++| +...+
T Consensus 92 ~~~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 00000 00000001111 12222333 24556899999964 445666666655445666666555 43333
Q ss_pred hhc-cccceEeecCCCCHHHHHHHhc
Q 035646 321 LMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
... ......+++.+++.++..+.+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~ 196 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQ 196 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 322 1123567889999988887766
No 105
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.75 E-value=0.00055 Score=74.37 Aligned_cols=175 Identities=15% Similarity=0.186 Sum_probs=94.3
Q ss_pred ccccccchhhHHHHHHHhh---h-------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 174 LEHLVGIDSHLKNLRLLMD---K-------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
-.+++|.+...+++.+++. . +....+-+.++|++|+|||+||+.++......| +. ++
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----
Confidence 3567888877776665443 1 112245688999999999999999998654332 21 11
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH----------------HHHHHhcCCCCC--
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK----------------QLECLAGKREWF-- 305 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 305 (584)
...+. ....+. ........+.......+.+|+||+++... .+..++..+...
T Consensus 121 ~~~~~----~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 121 GSDFV----EMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHHH----HHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 01111 111110 11122223333445678999999995421 122333222211
Q ss_pred CCCcEEEEEccccchh-----hccccceEeecCCCCHHHHHHHhc----CCc----hhHHHhhhhhhCCCHHHHHHHHH
Q 035646 306 GPGSRIVITSRDKHLL-----MMHGVDEIYNLRELHDDKALQLFC----GLP----LALKVLGSFLYGKTTKEWESALK 371 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~----G~P----Lal~~~~~~L~~~~~~~w~~~l~ 371 (584)
..+..||.||...... ........++++..+.++-.++|. +.+ ..+..++....+.+..+...+++
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHH
Confidence 2344566677554321 112345678899888888888777 332 23445555554445444444443
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00056 Score=70.33 Aligned_cols=163 Identities=16% Similarity=0.097 Sum_probs=92.4
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc----ccceEEEEechhhcccCChHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN----FEASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
...++|.+...+.+...+..+. ....+.|+|+.|+||||+|..+++.+-.. +..... ....+......
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~-------~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL-------ADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc-------CCCCCCCHHHH
Confidence 3678999999999999987553 34678999999999999999999876442 111100 00001111222
Q ss_pred HHHHH-------HhCCCCCC------CcChhhhHHHHHHHH-----cCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCc
Q 035646 250 QLLSQ-------LLKLPNNG------IWNVYDGINIIGRRL-----RHKKVLLIIDDVV--DIKQLECLAGKREWFGPGS 309 (584)
Q Consensus 250 ~i~~~-------l~~~~~~~------~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs 309 (584)
.+... +....+.. .-..+ .+..+.+.+ .+++-++|+|+++ +....+.++..+.....++
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd-~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVD-EIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHH-HHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22111 00000000 00111 223344443 2466799999997 3444555655544434455
Q ss_pred EEE-EEccccchhhcc-ccceEeecCCCCHHHHHHHhc
Q 035646 310 RIV-ITSRDKHLLMMH-GVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 310 ~Ii-iTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+| +|++...+.... .....+.+.+++.++..+++.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~ 210 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALS 210 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHH
Confidence 544 444443333221 233688999999999999886
No 107
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0028 Score=70.07 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=88.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-+ ...+.-.....+...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHhcC
Confidence 568999999999998887543 24667899999999999999999876422110000 000111111222111
Q ss_pred HhCC----CCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccc-cchhh
Q 035646 255 LLKL----PNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRD-KHLLM 322 (584)
Q Consensus 255 l~~~----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~ 322 (584)
.... ........++ +..+.+.+ .+++-++|+|+++. .+..+.|+..+......+.+|++|.+ ..+..
T Consensus 87 ~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 0000 0000011111 11222222 24566899999963 45566666555544456666665543 33322
Q ss_pred c-cccceEeecCCCCHHHHHHHhc
Q 035646 323 M-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. ......+++.+++.++....+.
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~ 189 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLR 189 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHH
Confidence 1 1223567888999888877665
No 108
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00061 Score=73.98 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=82.3
Q ss_pred ccccccchhhHH--HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccccc--ceEEEEechhhcccCChHHHHH
Q 035646 174 LEHLVGIDSHLK--NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE--ASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 174 ~~~~vGR~~~~~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
+..++|-...+. ...++..........+.|+|..|+|||.|+..+++.....+. .+.++. ...+..
T Consensus 288 DnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~ 357 (617)
T PRK14086 288 DTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTN 357 (617)
T ss_pred hhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHH
Confidence 344456554422 233333322222345899999999999999999997654332 234443 233333
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH---HHH-HHHhcCCCC-CCCCcEEEEEccccc-----
Q 035646 250 QLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI---KQL-ECLAGKREW-FGPGSRIVITSRDKH----- 319 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~~----- 319 (584)
.+...+... ....+++.+++ .=+|||||+... +.+ +.++..+.. ...|..|||||+...
T Consensus 358 el~~al~~~----------~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 358 EFINSIRDG----------KGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred HHHHHHHhc----------cHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhh
Confidence 443332210 12223344433 357899999532 111 222222211 133566888887531
Q ss_pred ----hhhccccceEeecCCCCHHHHHHHhc
Q 035646 320 ----LLMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 320 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+...+...-+++|.+.+.+.-.+++.
T Consensus 427 l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 427 LEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred ccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 12223344678999999998888887
No 109
>CHL00176 ftsH cell division protein; Validated
Probab=97.72 E-value=0.00052 Score=75.90 Aligned_cols=149 Identities=14% Similarity=0.227 Sum_probs=84.7
Q ss_pred ccccccchhhHHHHHHHhh---hc-------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 174 LEHLVGIDSHLKNLRLLMD---KE-------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+++|.++..+++.+.+. .. ....+-|.++|++|+|||+||+.++......| +. ++.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~----is~--- 249 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS----ISG--- 249 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee----ccH---
Confidence 3567898887777766543 11 11245699999999999999999998653322 21 110
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH----------------HHHHHHhcCCCCC--
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI----------------KQLECLAGKREWF-- 305 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 305 (584)
..+.. ...+. ........+.......+++|++|+++.. ..+..++..+...
T Consensus 250 -s~f~~----~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 -SEFVE----MFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -HHHHH----Hhhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11111 00000 1112223344445678999999999633 1133444333221
Q ss_pred CCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||.||....... .......+.++..+.++-.+++.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~ 363 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILK 363 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHH
Confidence 23556666776543322 12244677888888888888887
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.71 E-value=4.9e-05 Score=77.89 Aligned_cols=92 Identities=16% Similarity=0.085 Sum_probs=60.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChh-----hhHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVY-----DGIN 271 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~ 271 (584)
...++|+|++|+|||||++.+++.+... |+..+|+..+++ ....+.++++.+...+............ ...+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4679999999999999999999976655 888899874321 2357888888886554333222211111 1111
Q ss_pred HHHHH-HcCCCcEEEEeCCCC
Q 035646 272 IIGRR-LRHKKVLLIIDDVVD 291 (584)
Q Consensus 272 ~l~~~-L~~k~~LlVlDdv~~ 291 (584)
..... -.+++++|++|.+..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 11222 257999999999953
No 111
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=0.00017 Score=63.35 Aligned_cols=34 Identities=26% Similarity=0.077 Sum_probs=27.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
..+.|+|++|+||||+++.++..........+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4789999999999999999999776654334444
No 112
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0024 Score=68.86 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=87.4
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-ccc--eEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEA--SSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~--~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..++|-+...+.|...+..+. -.++..++|+.|+||||+|+.+++.+-.. ... .+-.+ .....+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C------------~~C~~~ 80 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC------------IQCQSA 80 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc------------HHHHHH
Confidence 568999999999999887442 34677899999999999999999865221 000 00000 000000
Q ss_pred HHHH----hCCCCCCCcChhhhHHHHHHH----HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEcccc-ch
Q 035646 252 LSQL----LKLPNNGIWNVYDGINIIGRR----LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDK-HL 320 (584)
Q Consensus 252 ~~~l----~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v 320 (584)
.... ...........++....+... ..+++-++|+|+++. .+..+.|+..+....+.+++|++|.+. .+
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 0000 000000000011111111110 013456899999964 455666665555445667777666553 22
Q ss_pred hh-ccccceEeecCCCCHHHHHHHhc
Q 035646 321 LM-MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ~~-~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.. .......+++.+++.++..+.+.
T Consensus 161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~ 186 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLK 186 (535)
T ss_pred chHHHhhceeEEcCCCCHHHHHHHHH
Confidence 11 11234678999999999888876
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0024 Score=70.40 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=86.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+...+.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-... ....+.-.....+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~---------~~~c~~c~~c~~i~-- 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT---------AEPCNVCPPCVEIT-- 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC---------CCCCCccHHHHHHh--
Confidence 568999999999999887542 246778999999999999999998653210000 00000000000000
Q ss_pred HhCCCCCC--------CcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEc-ccc
Q 035646 255 LLKLPNNG--------IWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITS-RDK 318 (584)
Q Consensus 255 l~~~~~~~--------~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~ 318 (584)
.....+ ....++ ++.+.+.+ .+++-++|+|+++. ....+.|+..+....+.+.+|++| ...
T Consensus 84 --~g~~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 84 --EGRSVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred --cCCCCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 000000 000111 12222222 24455899999964 445666665555445566665544 444
Q ss_pred chhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 319 HLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 319 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+... ......+++.+++.++....+.
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~ 188 (576)
T PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLR 188 (576)
T ss_pred hhhHHHHHhhhhhhcCCCCHHHHHHHHH
Confidence 34322 2234567888999988877765
No 114
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.003 Score=67.47 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=86.8
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc------cceEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF------EASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
..++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..- .+..... ...........
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~-C~~i~~~~~~d--- 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS-CKEISSGTSLD--- 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH-HHHHhcCCCCc---
Confidence 568999999999999987442 246788999999999999999998653210 0000000 00000000000
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccc-cch
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRD-KHL 320 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v 320 (584)
+ ..+.+... ...++ +..+.+.+ .+++-++|+|+++. .+..+.|...+......+.+|++|.+ ..+
T Consensus 92 --~-~~i~g~~~---~gid~-ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl 164 (451)
T PRK06305 92 --V-LEIDGASH---RGIED-IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKI 164 (451)
T ss_pred --e-EEeecccc---CCHHH-HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhc
Confidence 0 00000000 00111 11111211 25677899999964 34455566555544456666666533 333
Q ss_pred hhc-cccceEeecCCCCHHHHHHHhc
Q 035646 321 LMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
... ......+++.+++.++..+.+.
T Consensus 165 ~~tI~sRc~~v~f~~l~~~el~~~L~ 190 (451)
T PRK06305 165 PGTILSRCQKMHLKRIPEETIIDKLA 190 (451)
T ss_pred chHHHHhceEEeCCCCCHHHHHHHHH
Confidence 222 2234678999999999887776
No 115
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.68 E-value=0.0013 Score=68.98 Aligned_cols=218 Identities=19% Similarity=0.077 Sum_probs=121.4
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC
Q 035646 182 SHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN 261 (584)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~ 261 (584)
.-+.++.+.+... ..++.|.|+-++||||+++.+....... .+++...........+ .+...
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~~-------- 85 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLLR-------- 85 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHHH--------
Confidence 3444455444422 2299999999999999997776655444 4444311101111111 11111
Q ss_pred CCcChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhc------cccceEeecCCC
Q 035646 262 GIWNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMM------HGVDEIYNLREL 335 (584)
Q Consensus 262 ~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L 335 (584)
.+...-..++..++||.|.....|...+..+...++. +|++|+-+...... .|....+++-||
T Consensus 86 ----------~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 86 ----------AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred ----------HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 1111111277899999999999999888777665666 88888876654322 345577899999
Q ss_pred CHHHHHHH-------------hc------CCchhHHHhhhhhhCCCHHHHHHHHHHHhhcchhhHHHHHHHhh-hCCchh
Q 035646 336 HDDKALQL-------------FC------GLPLALKVLGSFLYGKTTKEWESALKRLKRESENEILDILKISF-DGLRET 395 (584)
Q Consensus 336 ~~~ea~~L-------------f~------G~PLal~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~-~~L~~~ 395 (584)
+..|-..+ |. |.|-++..-...-. ....+.. ... .++.+..- ... ..
T Consensus 155 SF~Efl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~~---~~~---~Di~~~~~~~~~-~~ 221 (398)
T COG1373 155 SFREFLKLKGEEIEPSKLELLFEKYLETGGFPESVKADLSEKK------LKEYLDT---ILK---RDIIERGKIENA-DL 221 (398)
T ss_pred CHHHHHhhcccccchhHHHHHHHHHHHhCCCcHHHhCcchhhH------HHHHHHH---HHH---HHHHHHcCcccH-HH
Confidence 99998753 33 77776543222111 0111110 000 01111111 111 34
Q ss_pred HHHHHhhhccc-cccCChhhHHHhhh-cCCCchhhhHHHHhhccceeE
Q 035646 396 EKKIFLDIACF-YQGENRDYVTKILD-YCDFDPVIGIRVLIDKSLIEI 441 (584)
Q Consensus 396 ~k~~fl~la~f-p~~~~~~~l~~~~~-~~~~~~~~~l~~L~~~sLi~~ 441 (584)
.++++.+++-. +.......+...+. -.......+++.|.+.-++..
T Consensus 222 ~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 222 MKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred HHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 55555555544 44557777777773 443445677888888777764
No 116
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.66 E-value=0.00039 Score=77.00 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+.++|++..+..+.+.+... ....+.|+|++|+||||||+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 56899999999887776533 34579999999999999999998754
No 117
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.00057 Score=68.41 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=68.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc--ccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN--FEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
.-+.++|++|+|||++|+.+++..... .....|+. ++. . .++..+.+.. .......+.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~----~----~l~~~~~g~~------~~~~~~~~~~- 119 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR----D----DLVGQYIGHT------APKTKEILKR- 119 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH----H----HHhHhhcccc------hHHHHHHHHH-
Confidence 368899999999999998888754321 11122332 111 1 1222222211 0111111221
Q ss_pred HcCCCcEEEEeCCCCH-----------HHHHHHhcCCCCCCCCcEEEEEccccchhhc--------cccceEeecCCCCH
Q 035646 277 LRHKKVLLIIDDVVDI-----------KQLECLAGKREWFGPGSRIVITSRDKHLLMM--------HGVDEIYNLRELHD 337 (584)
Q Consensus 277 L~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~--------~~~~~~~~l~~L~~ 337 (584)
...-+|+||++... +....+...+.....+.+||+++-....-.. ......+++++++.
T Consensus 120 --a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 120 --AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred --ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 23468999999632 2344555554444456677777654322111 11245789999999
Q ss_pred HHHHHHhc
Q 035646 338 DKALQLFC 345 (584)
Q Consensus 338 ~ea~~Lf~ 345 (584)
+|-.+++.
T Consensus 198 edl~~I~~ 205 (284)
T TIGR02880 198 AELLVIAG 205 (284)
T ss_pred HHHHHHHH
Confidence 99998876
No 118
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0034 Score=63.66 Aligned_cols=165 Identities=16% Similarity=0.103 Sum_probs=92.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc---------------cccceEEEEechhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH---------------NFEASSCLANVREIS 239 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~w~~~~~~~s 239 (584)
..++|.+...+.+.+.+..+. -.....++|+.|+||+++|..+++.+-. .++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468999999999999987552 2478999999999999999999986422 23444554311000
Q ss_pred ccCChHHHHHHHHHHHh-CCCCCCCcChhhhHHHHHHHHc-----CCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEE
Q 035646 240 EEGGLTSLQNQLLSQLL-KLPNNGIWNVYDGINIIGRRLR-----HKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRI 311 (584)
Q Consensus 240 ~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~I 311 (584)
+..... ...+.... .......-..+ .++.+.+.+. +++-++|+|+++. ......++..+....+..-|
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 000000 00000000 00000000111 1233444432 4567899999964 44555565555443433334
Q ss_pred EEEccccchhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 312 VITSRDKHLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 312 iiTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
++|+....+... ......+++.+++.++..+.+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~ 192 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLK 192 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHH
Confidence 445444444433 2244688999999999999887
No 119
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.65 E-value=0.0003 Score=67.24 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=39.9
Q ss_pred ccccccchhhHHHHHHHhhh--cCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDK--ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.+.++|.+.+.+.|.+-... ......-+.+||..|.|||+|++++.+.+...
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 46789999998888654431 12235678899999999999999999977654
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0023 Score=70.52 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=89.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc--ccceEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN--FEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-.. .+...|..... ...+.-.....+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~---~~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT---EPCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC---CCCccCHHHHHHh
Confidence 568999999999999887442 24668899999999999999999865331 11111221000 0000001111110
Q ss_pred HHHhC----CCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEE-Eccccch
Q 035646 253 SQLLK----LPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVI-TSRDKHL 320 (584)
Q Consensus 253 ~~l~~----~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v 320 (584)
..-.. -........++.. .+.+.+ .+.+-++|+|+++. ....+.|+..+....+.+.+|+ |++...+
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred ccCCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 00000 0000001112222 122222 34556899999964 3456666666554445555554 4443433
Q ss_pred hhc-cccceEeecCCCCHHHHHHHhc
Q 035646 321 LMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
... ......+++.+++.++....+.
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~ 196 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQ 196 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHH
Confidence 322 2345688999999998877665
No 121
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0013 Score=65.64 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=86.9
Q ss_pred ccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 176 HLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
.+=|-++.+++|.+....+ =+.++-|.+||++|.|||-||++++++....| +..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvv--------- 217 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVV--------- 217 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEec---------
Confidence 3457888999998876522 13467899999999999999999999876554 2211
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc-CCCcEEEEeCCCCHH----------------HHHHHhcCCCCCC-
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR-HKKVLLIIDDVVDIK----------------QLECLAGKREWFG- 306 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~- 306 (584)
-.++.+...+. -..++..+.+.-+ ..+..|.+|.++... .+-+|+..+..|.
T Consensus 218 ---gSElVqKYiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 218 ---GSELVQKYIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ---cHHHHHHHhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 01223332221 1233444444443 569999999985321 1224444444333
Q ss_pred -CCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 307 -PGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 -~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...|||..|...+++. .-..+..++++.-+.+.-.+.|.
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 4568998887655432 23345677777444444445554
No 122
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.62 E-value=0.00054 Score=72.22 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=85.4
Q ss_pred cccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.+..+++|.+.+... -...+-+.|+|++|+|||++|+.+++.....|- .+. .+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~----~se--- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV----GSE--- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe----cch---
Confidence 44678999999998876421 123457889999999999999999997765441 111 010
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH----------------HHHHHhcCCCC--C
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK----------------QLECLAGKREW--F 305 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~--~ 305 (584)
+ .....+. ........+.....+.+.+|+||+++... .+..++..+.. .
T Consensus 253 ---L----~~k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 ---L----IQKYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---h----hhhhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1 1110100 00111122222334678899999974221 11222222211 1
Q ss_pred CCCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||+||.....+.. ......++++..+.++..++|.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFE 364 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHH
Confidence 345678888875543322 2345678999999999888887
No 123
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.62 E-value=6.5e-05 Score=67.68 Aligned_cols=64 Identities=27% Similarity=0.373 Sum_probs=56.4
Q ss_pred EEEcCccCcc-cCchHHHHHHHHhhC-CCcEEEeCCCCCC--CCcccHHHHHHhhhcceEEEEeccCc
Q 035646 21 VFLSFRGEDT-RKNFTDHLYSALDEK-GIIVFRDDKELER--GESISPGLFKAIEESKISIVVFSRSY 84 (584)
Q Consensus 21 vFis~~~~D~-~~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~y 84 (584)
|||||+.... ...+|..|++.|+.. |+.|.+|.++... +..+...+.+.+++++..|+|+||.|
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 9999998552 346799999999999 9999999988854 77899999999999999999999765
No 124
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.60 E-value=0.0086 Score=61.89 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=32.5
Q ss_pred chhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHH-HHHHh
Q 035646 180 IDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLA-GVVYD 220 (584)
Q Consensus 180 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~~~~ 220 (584)
|.+.+++|..||....+ ..|.|.|+-|+||+.|+ .++.+
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~ 40 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLK 40 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHh
Confidence 56778999999986543 68999999999999999 66665
No 125
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.60 E-value=5.5e-05 Score=86.50 Aligned_cols=62 Identities=26% Similarity=0.385 Sum_probs=53.0
Q ss_pred cccEEEecCcc-----CCC-CccccccCeeEEEecCC-CCCCCCCCC-CCCCceEEEcCCCCccccCCCCC
Q 035646 522 NLRMLLIRNLQ-----LPE-GLEYLSNELRLLERHGY-PLRSLPSNF-QPDKIVELNMRYSRIEQMWCGIK 584 (584)
Q Consensus 522 ~LrvL~L~~~~-----lp~-~i~~l~~~LryL~l~~~-~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~~~ 584 (584)
.|++|-+.++. ++. .+..++ +||+|+|++| .+..||++| +|-||++|||++|.|..||.|++
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~ 615 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG 615 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH
Confidence 68888887763 222 266788 9999999988 899999999 99999999999999999999863
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0082 Score=65.73 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=89.5
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-----ccceEEEEechhhcc--cCChHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-----FEASSCLANVREISE--EGGLTSL 247 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~w~~~~~~~s~--~~~~~~~ 247 (584)
..++|-+..++.|...+..+. -.+...++|+.|+||||+|+.+++.+-.. .++...-. ...+.. ..++..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~-C~~i~~~~~~dv~~- 92 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS-CKSIDNDNSLDVIE- 92 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH-HHHHHcCCCCCeEE-
Confidence 568999999999999997542 35678899999999999999999865321 11111000 000000 000000
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHH-----HcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccc-cc
Q 035646 248 QNQLLSQLLKLPNNGIWNVYDGINIIGRR-----LRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRD-KH 319 (584)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~ 319 (584)
+.+. .....++.. .+.+. ..+++-++|+|+++ +....+.|+..+....+.+.+|++|.+ ..
T Consensus 93 -------idga---s~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 93 -------IDGA---SNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred -------ecCc---ccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 0000 001111111 12211 13566689999996 445577777666654566666665543 33
Q ss_pred hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 320 LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+... ......+++.+++.++..+.+.
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~ 188 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLK 188 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHH
Confidence 3221 2234568899999999887776
No 127
>PRK08181 transposase; Validated
Probab=97.57 E-value=0.00038 Score=68.67 Aligned_cols=99 Identities=21% Similarity=0.064 Sum_probs=54.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
.-+.|+|++|+|||.||..+++........+.|+. ..++...+..... ... .....+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~~------~~~----~~~~l~~l- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVARR------ELQ----LESAIAKL- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHHh------CCc----HHHHHHHH-
Confidence 45899999999999999999987654433445553 2344444432210 011 11122223
Q ss_pred CCCcEEEEeCCC----CHHHHHHHhcCCCCCCCCcEEEEEcccc
Q 035646 279 HKKVLLIIDDVV----DIKQLECLAGKREWFGPGSRIVITSRDK 318 (584)
Q Consensus 279 ~k~~LlVlDdv~----~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 318 (584)
.+.-||||||+. +......+...+.....+..+||||...
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 245599999994 2222222332222111224588998765
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0099 Score=65.87 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=87.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+-....... . ....+.-.....+...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~------~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T------PEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C------CCCCcccHHHHHHhcC
Confidence 567899999999999988543 2357789999999999999999987543211000 0 0000101111111111
Q ss_pred HhC----CCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccc-cchhh
Q 035646 255 LLK----LPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRD-KHLLM 322 (584)
Q Consensus 255 l~~----~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~ 322 (584)
... .........+. ++.+.+.+ .+++-++|+|+++. .+..+.|+..+......+.+|++|.+ ..+..
T Consensus 88 ~h~D~~ei~~~~~~~vd~-IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 88 NALDVIEIDAASNTGVDN-IRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCccEEEEeccccCCHHH-HHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 000 00000011111 11111221 24556899999974 45566666665544455555544433 33332
Q ss_pred c-cccceEeecCCCCHHHHHHHhc
Q 035646 323 M-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. ......+++..++.++....+.
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~ 190 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLS 190 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHH
Confidence 2 2234577888999988877665
No 129
>CHL00181 cbbX CbbX; Provisional
Probab=97.56 E-value=0.00081 Score=67.33 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=68.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc-c-cceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN-F-EASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
..+.++|.+|+|||++|+.+++..... + ...-|+. ++ ... +.....+.. .......+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~----l~~~~~g~~------~~~~~~~l~~- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDD----LVGQYIGHT------APKTKEVLKK- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHH----HHHHHhccc------hHHHHHHHHH-
Confidence 458899999999999999998854221 1 1112332 11 111 222221111 0111111222
Q ss_pred HcCCCcEEEEeCCCC-----------HHHHHHHhcCCCCCCCCcEEEEEccccchhh--------ccccceEeecCCCCH
Q 035646 277 LRHKKVLLIIDDVVD-----------IKQLECLAGKREWFGPGSRIVITSRDKHLLM--------MHGVDEIYNLRELHD 337 (584)
Q Consensus 277 L~~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~ 337 (584)
...-+|++|+++. .+....+...+.....+.+||+++-...+.. .......+.+++++.
T Consensus 121 --a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 --AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred --ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2345999999964 2334455554444445667777775432211 112345789999999
Q ss_pred HHHHHHhc
Q 035646 338 DKALQLFC 345 (584)
Q Consensus 338 ~ea~~Lf~ 345 (584)
+|..+++.
T Consensus 199 ~el~~I~~ 206 (287)
T CHL00181 199 EELLQIAK 206 (287)
T ss_pred HHHHHHHH
Confidence 99988876
No 130
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0086 Score=65.74 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=87.6
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+...+.|.+++..+. -.+...++|+.|+|||++|+.+++.+-..-... ....+.-.....+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C~~C~~i~~- 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNECEICKAITN- 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccHHHHHHhc-
Confidence 578999999999999998543 246778899999999999999998653211000 000000001111110
Q ss_pred HhCCCCCC--------CcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEE-Ecccc
Q 035646 255 LLKLPNNG--------IWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVI-TSRDK 318 (584)
Q Consensus 255 l~~~~~~~--------~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~ 318 (584)
....+ .... +.+..+.+.. .+++-++|+|+++. ......|+..+........+|+ ||...
T Consensus 85 ---g~~~dv~eidaas~~~v-d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 85 ---GSLMDVIEIDAASNNGV-DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred ---CCCCCeEEeeccccCCH-HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 00000 0011 1112222221 34566899999974 4556677665554344555554 44433
Q ss_pred chhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 319 HLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 319 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+... ......+++.+++.++..+.+.
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~ 188 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLK 188 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHH
Confidence 33322 2234567889999988887775
No 131
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.002 Score=62.27 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=42.1
Q ss_pred cccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 175 EHLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
..|||.++..++|.=.+... ....-.|.++|++|.||||||.-+++.+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 67999999988887777632 22367899999999999999999999876654
No 132
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=97.53 E-value=5.1e-05 Score=41.97 Aligned_cols=20 Identities=55% Similarity=1.154 Sum_probs=19.0
Q ss_pred CceEEEcCCCCccccCCCCC
Q 035646 565 KIVELNMRYSRIEQMWCGIK 584 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~~~~ 584 (584)
+|..|+|++|++++||+|+|
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 68999999999999999987
No 133
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.51 E-value=2.9e-05 Score=81.76 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=29.8
Q ss_pred ccccccccccEEEecCcc---CCCCccc-cccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCC
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPEGLEY-LSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYS 574 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~~i~~-l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s 574 (584)
..+..-+++-||.|++++ +|++++- |. -|-||+|++++++.||+.+ .|.+||||+|+++
T Consensus 120 ~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 444444445555554442 3333221 22 3445566555666666665 5666666666555
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.011 Score=65.62 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=88.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccccc------ceEEEEechhhc--ccCChHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE------ASSCLANVREIS--EEGGLTS 246 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~w~~~~~~~s--~~~~~~~ 246 (584)
..++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.... +..+-. ...+. ..+++..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s-C~~~~~~~~~n~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES-CVAFNEQRSYNIHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH-HHHHhcCCCCceEE
Confidence 568999999999999987442 2467889999999999999999986532110 000000 00000 0000000
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHH----HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEE-Eccccc
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRR----LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVI-TSRDKH 319 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~ 319 (584)
... ......++....+... ..+++-++|+|+++. .+..+.|+..+.....++.+|+ |++...
T Consensus 95 ---------ld~--~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k 163 (614)
T PRK14971 95 ---------LDA--ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163 (614)
T ss_pred ---------ecc--cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence 000 0000111111111110 123455889999964 4556666666554455666555 544444
Q ss_pred hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 320 LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+... .....++++.+++.++....+.
T Consensus 164 Il~tI~SRc~iv~f~~ls~~ei~~~L~ 190 (614)
T PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQ 190 (614)
T ss_pred chHHHHhhhheeecCCCCHHHHHHHHH
Confidence 4432 2344678999999999988876
No 135
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.003 Score=68.50 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=89.8
Q ss_pred ccccccchhhHHHHHHHhhh----cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDK----ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
+.+-+|.++-.++|.+.|.- +.-...+++++|++|+|||+|++.+++.....|-. + .++++.....
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~---sLGGvrDEAE------ 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-I---SLGGVRDEAE------ 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-E---ecCccccHHH------
Confidence 77788999999999998862 22235799999999999999999999988776631 1 1222221111
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH----------HHHHHhcCCCC-C--------CCCcE
Q 035646 250 QLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK----------QLECLAGKREW-F--------GPGSR 310 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------~~~~l~~~~~~-~--------~~gs~ 310 (584)
+.+....-...+.-.+-+-....+.++-|++||.++... -++-|-+..+. | -.=|.
T Consensus 392 -----IRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 392 -----IRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred -----hccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 111111112222211211122234577899999996321 12222221110 0 01144
Q ss_pred E-EEEcccc-c--hhhccccceEeecCCCCHHHHHHHhc
Q 035646 311 I-VITSRDK-H--LLMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 311 I-iiTTR~~-~--v~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
| .|||-|. + ..+..+..+++++.+-+++|-.+.-.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk 505 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAK 505 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHH
Confidence 4 3444433 2 12334556889999999999888777
No 136
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.49 E-value=0.00034 Score=72.99 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=63.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc--cccceEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH--NFEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
...++.+..++.+...|..+ +.+.++|++|+|||++|+.+++.... .+..+.|+. +.+..+..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcccC
Confidence 55788888999998888743 47888999999999999999987643 455566665 444444443332210
Q ss_pred HHHhCCCCCCCc-ChhhhHHHHHHHHc--CCCcEEEEeCCCC
Q 035646 253 SQLLKLPNNGIW-NVYDGINIIGRRLR--HKKVLLIIDDVVD 291 (584)
Q Consensus 253 ~~l~~~~~~~~~-~~~~~~~~l~~~L~--~k~~LlVlDdv~~ 291 (584)
. ...... ......+.+..... +++++||+|+++.
T Consensus 247 ----P-~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 247 ----P-NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred ----C-CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 0 000100 00111222333322 4689999999964
No 137
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0044 Score=63.47 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=89.5
Q ss_pred cccc-chhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc--cceEEEEechhhcccCChHHHHHHHH
Q 035646 176 HLVG-IDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF--EASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 176 ~~vG-R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
.++| -+..++.+...+..+. -.....++|+.|+|||++|..+++.+-..- ....+ +.-.....+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c-----------g~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC-----------GTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC-----------CcCHHHHHHh
Confidence 3566 6667778888776432 356779999999999999999998643211 00000 0000000000
Q ss_pred HHHhC-----CCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc-
Q 035646 253 SQLLK-----LPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH- 319 (584)
Q Consensus 253 ~~l~~-----~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~- 319 (584)
..... .........++ +..+.+.+ .+.+-++|+|+++. .+..+.|+..+..-.+++.+|++|.+..
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred cCCCCCEEEeccccccCCHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 00000 00000011111 11122222 24556799999964 4456667666665567777777776543
Q ss_pred hhhc-cccceEeecCCCCHHHHHHHhc--CCchh
Q 035646 320 LLMM-HGVDEIYNLRELHDDKALQLFC--GLPLA 350 (584)
Q Consensus 320 v~~~-~~~~~~~~l~~L~~~ea~~Lf~--G~PLa 350 (584)
+... ......+++.+++.++..+.+. |.+-.
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~gi~~~ 186 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEEGISES 186 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHcCCChH
Confidence 3322 2244678999999999988887 65543
No 138
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0011 Score=73.57 Aligned_cols=133 Identities=15% Similarity=0.163 Sum_probs=83.8
Q ss_pred ccccccchhhHHHHHHHhhhc-------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
...++|.+..++.+.+.+... +.........|+.|+|||.||++++..+-..=+..+-++ +.+
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----------MSE 559 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----------MSE 559 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----------hHH
Confidence 688999999999998877632 233567888999999999999999986543223333332 222
Q ss_pred HH-HHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCc-EEEEeCCC--CHHHHHHHhcCCCCC----C-------CCcEE
Q 035646 247 LQ-NQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKV-LLIIDDVV--DIKQLECLAGKREWF----G-------PGSRI 311 (584)
Q Consensus 247 ~~-~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~I 311 (584)
.. +.-.+.+.+.++.-..-.+ -..|.+..+.+|| ++.||.++ .++.++-|+..+... + .++-|
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 22 2334444554443322211 3346677778888 88899997 456666666555432 2 23556
Q ss_pred EEEcccc
Q 035646 312 VITSRDK 318 (584)
Q Consensus 312 iiTTR~~ 318 (584)
|+||.-.
T Consensus 638 ImTSN~G 644 (786)
T COG0542 638 IMTSNAG 644 (786)
T ss_pred EEecccc
Confidence 7777543
No 139
>PLN03150 hypothetical protein; Provisional
Probab=97.43 E-value=9e-05 Score=82.58 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=57.1
Q ss_pred ccccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccCCC
Q 035646 513 SSNSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPDKIVELNMRYSRIE-QMWCG 582 (584)
Q Consensus 513 ~~~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~~L~~L~l~~s~i~-~lp~~ 582 (584)
+|..+.++++|+.|+|++|. +|..++.++ +|++|+|++|++. .+|+.+ +|.+|++|+|++|++. .+|..
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 34678889999999998874 567788888 8999999999887 788888 8999999999998876 55653
No 140
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.43 E-value=0.0022 Score=73.11 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=39.7
Q ss_pred cccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 175 EHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+.+.|.+..++.+.+++... -...+.+.|+|++|+|||+||+.+++.....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 45789999999998876421 1224678899999999999999999876543
No 141
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.41 E-value=0.00056 Score=66.14 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..|.++|..+-....++.|+|.+|+|||++|.+++.........++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4455666544334679999999999999999999987655556778886
No 142
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.39 E-value=3.4e-05 Score=68.55 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=56.4
Q ss_pred cccccccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 035646 510 FSTSSNSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIE 577 (584)
Q Consensus 510 ~~~~~~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~ 577 (584)
+...|..+..+++|.+|.+.++ +||.+|..|+ +||.|++.-+++..+|..| .+.-|++|||.++++.
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~-klr~lnvgmnrl~~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP-KLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhch-hhhheecchhhhhcCccccCCCchhhhhhccccccc
Confidence 3334467788999999999887 5788999998 8999999888999999999 8999999999988764
No 143
>PRK09183 transposase/IS protein; Provisional
Probab=97.39 E-value=0.00072 Score=66.71 Aligned_cols=34 Identities=21% Similarity=-0.040 Sum_probs=24.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
..+.|+|++|+|||+||..++.........+.++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999999987643332233344
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0035 Score=63.97 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=44.8
Q ss_pred CCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccccc-hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 279 HKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDKH-LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 279 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+++-++|+|+++ +.+....++..+..-.+++.+|+||.+.. +... ......+.+.+++.+++.+.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQ 175 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHH
Confidence 344456789997 45566677666655456777777776653 3322 2234678999999999988775
No 145
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.0035 Score=64.64 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=110.3
Q ss_pred ccccccchhhHHHHHHHhhh--cCCceEEEEEEecCCccHHHHHHHHHhhhcccccc--eEEEEechhhcccCChHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDK--ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEA--SSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~s~~~~~~~~~~ 249 (584)
+...+||+.|+..+..++.. ..+..+.+-|.|-+|.|||.+...++.+....... .+++. ...-....+++.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~aiF~ 224 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAIFK 224 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHHHH
Confidence 57899999999999999863 23346788899999999999999999876654433 34554 222245567777
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHcC--CCcEEEEeCCCCHHH--HHHHhcCCCC-CCCCcEEEEEcccc------
Q 035646 250 QLLSQLLKLPNNGIWNVYDGINIIGRRLRH--KKVLLIIDDVVDIKQ--LECLAGKREW-FGPGSRIVITSRDK------ 318 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~IiiTTR~~------ 318 (584)
.|+..+.......... .+....+.....+ ..+|+|+|..+.... -..+...+.| .-+++++|+.---.
T Consensus 225 kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 7777763322222222 2333444444433 368999999864321 1111111111 12455554432111
Q ss_pred chhhcc-----ccceEeecCCCCHHHHHHHhc----------CCchhHHHhhhhhhC
Q 035646 319 HLLMMH-----GVDEIYNLRELHDDKALQLFC----------GLPLALKVLGSFLYG 360 (584)
Q Consensus 319 ~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~----------G~PLal~~~~~~L~~ 360 (584)
..+... -....+..+|-+.++..++|. -.|-||...|+-...
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 111111 123567788999999999998 667777777776654
No 146
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0026 Score=65.83 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=77.7
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
....+.|||..|.|||.|++++.+......+....+. ++ .......++..+.. .....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~----se~f~~~~v~a~~~----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LT----SEDFTNDFVKALRD----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----cc----HHHHHHHHHHHHHh----------hhHHHHHHh
Confidence 3678999999999999999999998877766444443 12 22333333333221 123445555
Q ss_pred HcCCCcEEEEeCCCC----HHHHHHHhcCCCC-CCCCcEEEEEccccc---------hhhccccceEeecCCCCHHHHHH
Q 035646 277 LRHKKVLLIIDDVVD----IKQLECLAGKREW-FGPGSRIVITSRDKH---------LLMMHGVDEIYNLRELHDDKALQ 342 (584)
Q Consensus 277 L~~k~~LlVlDdv~~----~~~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 342 (584)
. .-=++++||++- ...-+.++..+.. ...|-.||+|++... +.......-++++.+.+.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 5 344888999942 1112222222211 123448999986542 12223344678999999998888
Q ss_pred Hhc
Q 035646 343 LFC 345 (584)
Q Consensus 343 Lf~ 345 (584)
++.
T Consensus 252 iL~ 254 (408)
T COG0593 252 ILR 254 (408)
T ss_pred HHH
Confidence 876
No 147
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.34 E-value=0.014 Score=57.12 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=88.5
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc--ccccceEEEEechhhcccCChHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS--HNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
...++|.+..+..|.+.+.. ........+|++|.|||+-|..++...- +-|++++.-.+ +|...+..-.-..+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr~Ki 109 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVREKI 109 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchhhhh
Confidence 35678999999999888875 3567889999999999999999998643 33555443221 12222221100000
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHH--cCCC-cEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccchhh--cc
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRL--RHKK-VLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKHLLM--MH 324 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~-~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~--~~ 324 (584)
.+............ -.++ -.+|||+++. .+.|..+..........++.|+.+..-.... ..
T Consensus 110 ------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 110 ------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 00000000000000 0122 4789999975 5668888877776666776554443321111 11
Q ss_pred ccceEeecCCCCHHHHHHHhc
Q 035646 325 GVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 325 ~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.....+..++|..++..+-+.
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLE 198 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHH
Confidence 123456788888887776665
No 148
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.34 E-value=0.0051 Score=70.22 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=94.7
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.+...+.|.+.+.. +-...+-+.++|++|+|||+||+.+++.....| +.+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~------~--- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR------G--- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe------h---
Confidence 4567888887777776541 112245689999999999999999999765443 1111 0
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHH-HHHHcCCCcEEEEeCCCCH--------------HHHHHHhcCCCCC--C
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINII-GRRLRHKKVLLIIDDVVDI--------------KQLECLAGKREWF--G 306 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~ 306 (584)
. .++....+ ..+..+..+ ...-...+.+|++|+++.. .....++..+... .
T Consensus 521 -~----~l~~~~vG-------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 -P----EILSKWVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -H----HHhhcccC-------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 0 11111111 111222222 2333467899999998532 1123343333221 2
Q ss_pred CCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc----CCchh----HHHhhhhhhCCCHHHHHH
Q 035646 307 PGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC----GLPLA----LKVLGSFLYGKTTKEWES 368 (584)
Q Consensus 307 ~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~----G~PLa----l~~~~~~L~~~~~~~w~~ 368 (584)
.+..||.||..+..... ...+..+.++..+.++-.++|. +.|++ +..+|....+.+..+...
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 663 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA 663 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 34456667765543221 2355778899999998888886 55543 344554444444444433
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.34 E-value=0.0039 Score=70.98 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=40.2
Q ss_pred ccccccchhhHHHHHHHhhhc------C-CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE------C-NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++|.+..++.+...+... . ....++.++|++|+|||+||+.++....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 678899999999998877632 1 1245688999999999999999998763
No 150
>PRK06526 transposase; Provisional
Probab=97.33 E-value=0.00046 Score=67.67 Aligned_cols=26 Identities=23% Similarity=-0.035 Sum_probs=22.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.-+.|+|++|+|||+||..+......
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 46899999999999999999886543
No 151
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.33 E-value=0.0024 Score=58.21 Aligned_cols=133 Identities=17% Similarity=0.096 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc--------------------cccceEEEEechhh
Q 035646 179 GIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH--------------------NFEASSCLANVREI 238 (584)
Q Consensus 179 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~f~~~~w~~~~~~~ 238 (584)
|-+...+.|...+..+. -...+.++|..|+||+++|..+++.+-. .++...|+... ..
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 55666777777776432 2457899999999999999999985422 12333333200 00
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEE
Q 035646 239 SEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRI 311 (584)
Q Consensus 239 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~I 311 (584)
.....+.+ +..+.+.+ .+++=++|+||++ +.+....|+..+.....++.+
T Consensus 79 ~~~i~i~~-----------------------ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 79 KKSIKIDQ-----------------------IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp SSSBSHHH-----------------------HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cchhhHHH-----------------------HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 00111111 11222222 2356689999997 455666666655555678888
Q ss_pred EEEccccch-hhc-cccceEeecCCCC
Q 035646 312 VITSRDKHL-LMM-HGVDEIYNLRELH 336 (584)
Q Consensus 312 iiTTR~~~v-~~~-~~~~~~~~l~~L~ 336 (584)
|++|.+..- ... ......+.+.+++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 888877642 222 1233455665553
No 152
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.32 E-value=0.00017 Score=53.89 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=37.0
Q ss_pred CeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 543 ELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 543 ~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
+|++|++++|.++.+|+. | .+.+|++|+|++++|+.+|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~ 43 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD 43 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence 799999999999999975 5 899999999999999999875
No 153
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.30 E-value=0.0023 Score=67.54 Aligned_cols=46 Identities=13% Similarity=-0.080 Sum_probs=39.1
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++||++.++.+...+..+ .-|.|.|++|+|||+||+.++....
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 366999999999998877644 4688999999999999999998654
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.28 E-value=0.0021 Score=73.82 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=40.4
Q ss_pred ccccccchhhHHHHHHHhhh-------cCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDK-------ECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++|.+..++.+.+.+.. ++....++.++|++|+|||.||+.++..+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67889999999999887752 122345789999999999999999998753
No 155
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.28 E-value=0.0034 Score=58.79 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=38.0
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.++||-++-++.+.-...++ +.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 56799998888887666543 46788899999999999999999864
No 156
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0025 Score=65.21 Aligned_cols=146 Identities=17% Similarity=0.091 Sum_probs=81.7
Q ss_pred ccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc---------------------cceEEEEe
Q 035646 176 HLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF---------------------EASSCLAN 234 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~w~~~ 234 (584)
.++|-+.....+..+..........+.++|++|+||||+|..+++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 356777778888877774443455799999999999999999999765332 1122221
Q ss_pred chhhcccCC---hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCc
Q 035646 235 VREISEEGG---LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGS 309 (584)
Q Consensus 235 ~~~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 309 (584)
.+.... ..+..+.+........ ..++.-++++|+++. .+.-..+...+......+
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 111111 1111222211110000 024677999999975 344556665555556788
Q ss_pred EEEEEcccc-chhhc-cccceEeecCCCCHHHHHH
Q 035646 310 RIVITSRDK-HLLMM-HGVDEIYNLRELHDDKALQ 342 (584)
Q Consensus 310 ~IiiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~ 342 (584)
.+|++|... .+... ......+++.+.+..+...
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIA 175 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchHHHHHH
Confidence 888887743 23221 1233456666644444333
No 157
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.25 E-value=0.00016 Score=50.03 Aligned_cols=38 Identities=32% Similarity=0.418 Sum_probs=31.9
Q ss_pred ccccEEEecCcc---CCCCccccccCeeEEEecCCCCCCCCC
Q 035646 521 INLRMLLIRNLQ---LPEGLEYLSNELRLLERHGYPLRSLPS 559 (584)
Q Consensus 521 ~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~~~l~~lP~ 559 (584)
++|++|+|+++. +|..++.|+ +|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~-~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLP-NLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCT-TSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCC-CCCEEEecCCCCCCCcC
Confidence 479999999984 566699998 99999999999998763
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.24 E-value=0.003 Score=72.85 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=66.5
Q ss_pred ccccccchhhHHHHHHHhhhcC-------CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC-------NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
...++|.+..++.+...+.... ....++.++|++|+|||+||+.+++.........+.+. .+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id----~se~~~--- 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID----MSEFME--- 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE----hHHhhh---
Confidence 5678999999999988776321 12357889999999999999999986533322333333 111110
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCC-CcEEEEeCCC--CHHHHHHHhcCC
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHK-KVLLIIDDVV--DIKQLECLAGKR 302 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k-~~LlVlDdv~--~~~~~~~l~~~~ 302 (584)
......+.+....... ... ...+.+.++.+ .-+|+||+++ +.+.+..++..+
T Consensus 640 --~~~~~~LiG~~pgy~g-~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 640 --KHSVSRLVGAPPGYVG-YEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred --hhhHHHHhCCCCcccc-cch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 1122233332221111 111 12234444333 3699999997 455555555433
No 159
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.0013 Score=72.35 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=41.2
Q ss_pred ccccccchhhHHHHHHHhhhcC---CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC---NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++|.++.++++..++.... ...++++|+|++|+||||+++.++....
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3678999999999999987432 2346799999999999999999998654
No 160
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.23 E-value=0.0007 Score=68.87 Aligned_cols=35 Identities=14% Similarity=-0.028 Sum_probs=28.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..+.++|.+|+|||.||..+++.+......+.++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999997655544556664
No 161
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.22 E-value=0.013 Score=62.99 Aligned_cols=148 Identities=16% Similarity=0.078 Sum_probs=80.6
Q ss_pred cccccchhhHHHHHHHhh---h-----cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 175 EHLVGIDSHLKNLRLLMD---K-----ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
+++.|.+...+.+..... . +-...+-|.++|++|+|||.+|+.+++.....| +..+..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~---------- 293 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVG---------- 293 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhH----------
Confidence 456787766666554221 0 112356799999999999999999998764432 111110
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH--------------HHHHHhcCCCCCCCCcEEE
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK--------------QLECLAGKREWFGPGSRIV 312 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~Ii 312 (584)
.+.....+. +.......+...-...+++|++|+++... .+..++..+.....+..||
T Consensus 294 ---~l~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 294 ---KLFGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ---HhcccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 011110000 01111122222224579999999996321 0122222222223444566
Q ss_pred EEccccchh-----hccccceEeecCCCCHHHHHHHhc
Q 035646 313 ITSRDKHLL-----MMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 313 iTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.||...... .....+..+.++.-+.++-.++|.
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~ 402 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFK 402 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHH
Confidence 677665432 222455778888888888888887
No 162
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0021 Score=66.97 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=73.2
Q ss_pred CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHH-
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIG- 274 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~- 274 (584)
.....+.+.|++|+|||+||..++. ...|+.+-.+. .. ++ . .-+.......++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS------pe-~m-----------i------G~sEsaKc~~i~k 589 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS------PE-DM-----------I------GLSESAKCAHIKK 589 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC------hH-Hc-----------c------CccHHHHHHHHHH
Confidence 3467788999999999999999986 45677554442 11 00 0 001112222233
Q ss_pred ---HHHcCCCcEEEEeCCCCHHHHHHHh---------------cCCCCCCCCcEEEEEccccchhhcccc----ceEeec
Q 035646 275 ---RRLRHKKVLLIIDDVVDIKQLECLA---------------GKREWFGPGSRIVITSRDKHLLMMHGV----DEIYNL 332 (584)
Q Consensus 275 ---~~L~~k~~LlVlDdv~~~~~~~~l~---------------~~~~~~~~gs~IiiTTR~~~v~~~~~~----~~~~~l 332 (584)
..-+..=-.||+||++..-+|..+. ...+..+..--|+-||-...++..++. ...|+|
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 3334455689999997554443332 222322223334557777777777663 457888
Q ss_pred CCCCH-HHHHHHhc
Q 035646 333 RELHD-DKALQLFC 345 (584)
Q Consensus 333 ~~L~~-~ea~~Lf~ 345 (584)
+.++. ++..+.++
T Consensus 670 pnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLE 683 (744)
T ss_pred CccCchHHHHHHHH
Confidence 88887 66666665
No 163
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0015 Score=63.23 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=73.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh-h-cccccceEEEEechhhcc-----cCChHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL-T-SHNFEASSCLANVREISE-----EGGLTSL 247 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~w~~~~~~~s~-----~~~~~~~ 247 (584)
..+.+|......+..++... ..|.+.|++|.|||+||.+++.. + ...|...+...-.....+ ..++.+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 45678888888888877642 49999999999999999998874 3 344554433321111111 1111111
Q ss_pred H----HHHHHH---HhCCCCCCCcChhhhH--------HHHHHHHcCCCc---EEEEeCCCC--HHHHHHHhcCCCCCCC
Q 035646 248 Q----NQLLSQ---LLKLPNNGIWNVYDGI--------NIIGRRLRHKKV---LLIIDDVVD--IKQLECLAGKREWFGP 307 (584)
Q Consensus 248 ~----~~i~~~---l~~~~~~~~~~~~~~~--------~~l~~~L~~k~~---LlVlDdv~~--~~~~~~l~~~~~~~~~ 307 (584)
. .-+... +++. ...+... -.-..+++++.+ ++|+|.+.+ ..+...++.. .+.
T Consensus 131 ~~p~~~pi~D~L~~~~~~-----~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~ 202 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGA-----SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHhCh-----HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCC
Confidence 1 111111 1111 0000000 001235666654 999999964 5566666655 378
Q ss_pred CcEEEEEcccc
Q 035646 308 GSRIVITSRDK 318 (584)
Q Consensus 308 gs~IiiTTR~~ 318 (584)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999876443
No 164
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.011 Score=56.52 Aligned_cols=146 Identities=17% Similarity=0.143 Sum_probs=76.9
Q ss_pred CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCc-ChhhhHHHH
Q 035646 195 CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIW-NVYDGINII 273 (584)
Q Consensus 195 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~l 273 (584)
+++.+++.++|.-|.|||.+++......-+.=-..+.++ ........+...++..+...+..... ..+.....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 344579999999999999999955543332212222332 34556667777777776542221111 112222233
Q ss_pred HHHH-cCCC-cEEEEeCCCC--HHHHHHH---hcCCCCCCCCcEEEEEcccc--------chhhccccceE-eecCCCCH
Q 035646 274 GRRL-RHKK-VLLIIDDVVD--IKQLECL---AGKREWFGPGSRIVITSRDK--------HLLMMHGVDEI-YNLRELHD 337 (584)
Q Consensus 274 ~~~L-~~k~-~LlVlDdv~~--~~~~~~l---~~~~~~~~~gs~IiiTTR~~--------~v~~~~~~~~~-~~l~~L~~ 337 (584)
.... ++++ ..+++|++.. .+.++.+ ...-.....--+|+..-..+ ..........+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3333 4566 8999999953 3333333 22221111112233322111 01111112234 89999999
Q ss_pred HHHHHHhc
Q 035646 338 DKALQLFC 345 (584)
Q Consensus 338 ~ea~~Lf~ 345 (584)
++...++.
T Consensus 203 ~~t~~yl~ 210 (269)
T COG3267 203 AETGLYLR 210 (269)
T ss_pred HHHHHHHH
Confidence 98888876
No 165
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.18 E-value=0.0019 Score=62.42 Aligned_cols=49 Identities=18% Similarity=-0.023 Sum_probs=35.3
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc------cceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF------EASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~ 233 (584)
..|..+|..+-....++.|+|.+|+|||+||.+++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 445555543333457999999999999999999987654444 5567776
No 166
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.17 E-value=0.00039 Score=64.41 Aligned_cols=36 Identities=17% Similarity=-0.005 Sum_probs=26.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..-+.|+|.+|+|||.||..+++..-.+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356999999999999999999986544434456664
No 167
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.16 E-value=0.001 Score=63.51 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=33.9
Q ss_pred HhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 190 LMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 190 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+|..+=....++.|+|.+|+|||++|.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333333589999999999999999999987655556788886
No 168
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.14 E-value=0.001 Score=63.94 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=36.9
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..|..+|..+=....++.|+|.+|+||||||.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666533334689999999999999999999987655545667775
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.14 E-value=0.0032 Score=72.83 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=74.5
Q ss_pred ccccccchhhHHHHHHHhhhcC-------CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC-------NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
...++|.+..++.+...+.... ....++.++|++|+|||++|+.++......-...+.++ .+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d----~s~~~~--- 636 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID----MSEYME--- 636 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe----chhhcc---
Confidence 5678999999999988886421 12457889999999999999999986543322333333 121111
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCC-cEEEEeCCCC--HHHHHHHhcCCCCC-----------CCCcEEE
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKK-VLLIIDDVVD--IKQLECLAGKREWF-----------GPGSRIV 312 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~~--~~~~~~l~~~~~~~-----------~~gs~Ii 312 (584)
......+.+...... ..++ ...+.+.++.++ .+|+||+++. ++.+..|+..+... -..+-||
T Consensus 637 --~~~~~~l~g~~~g~~-g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 637 --KHSVARLIGAPPGYV-GYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred --cchHHHhcCCCCCcc-Cccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 011122222221111 1111 122444443344 4999999973 45555555443221 1234477
Q ss_pred EEcccc
Q 035646 313 ITSRDK 318 (584)
Q Consensus 313 iTTR~~ 318 (584)
+||...
T Consensus 713 ~TSn~g 718 (852)
T TIGR03346 713 MTSNLG 718 (852)
T ss_pred EeCCcc
Confidence 777653
No 170
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.0008 Score=64.74 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=29.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
-.++|.|..|+|||+|+..+.......|..+.++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 46789999999999999999998888996666554
No 171
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.11 E-value=6.9e-05 Score=79.00 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=64.7
Q ss_pred cccccccccccccccccEEEecCccCC---CCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCCC
Q 035646 508 MHFSTSSNSFLKMINLRMLLIRNLQLP---EGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 508 ~~~~~~~~~~~~~~~LrvL~L~~~~lp---~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
.++..+|.++..|.||+-+||+.++|| +.+..++ +||-|+|+++.|+.|...+ .-.+|++|+||+++++.||+-
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 356667789999999999999998654 5667777 8999999999999999999 899999999999999999974
No 172
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.10 E-value=0.0024 Score=57.83 Aligned_cols=34 Identities=24% Similarity=0.044 Sum_probs=26.8
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
++.|+|.+|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987655445556664
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.10 E-value=0.0055 Score=70.69 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=74.9
Q ss_pred ccccccchhhHHHHHHHhhhc-------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
...++|.+..++.+...+... +.....+.++|+.|+|||+||+.+++.+-..-...+-++ ..........
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~-- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTV-- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccH--
Confidence 688999999999998877522 112356779999999999999999986533222222222 1111111111
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCC-cEEEEeCCC--CHHHHHHHhcCCCCC-----------CCCcEEE
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKK-VLLIIDDVV--DIKQLECLAGKREWF-----------GPGSRIV 312 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~--~~~~~~~l~~~~~~~-----------~~gs~Ii 312 (584)
..+.+.+.... ..++ ...+.+.++.++ -+++||+++ +++..+.|+..+... ...+.+|
T Consensus 585 ------~~l~g~~~gyv-g~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 585 ------SKLIGSPPGYV-GYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred ------HHhcCCCCccc-CcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 11222211111 1111 123455565565 488999997 345555555544321 1345677
Q ss_pred EEcccc
Q 035646 313 ITSRDK 318 (584)
Q Consensus 313 iTTR~~ 318 (584)
+||...
T Consensus 657 ~Tsn~g 662 (821)
T CHL00095 657 MTSNLG 662 (821)
T ss_pred EeCCcc
Confidence 777654
No 174
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.10 E-value=0.0023 Score=64.56 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred cchhhHHHHHHHhhhcC--CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHh
Q 035646 179 GIDSHLKNLRLLMDKEC--NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLL 256 (584)
Q Consensus 179 GR~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~ 256 (584)
+|....+....++..-. ...+-+.|+|..|+|||.||.++++.....-..+.++. ...+...+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----------~~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----------FPEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----------HHHHHHHHHHHHh
Confidence 44444444455555221 13467899999999999999999998765444455554 2234444433321
Q ss_pred CCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCC--CHHHHH--HHhcCC-CC-CCCCcEEEEEcccc
Q 035646 257 KLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVV--DIKQLE--CLAGKR-EW-FGPGSRIVITSRDK 318 (584)
Q Consensus 257 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~--~l~~~~-~~-~~~gs~IiiTTR~~ 318 (584)
. .+. ....+.++ +-=||||||+- ....|. .++..+ .. ...+-.+|+||.-.
T Consensus 205 ~------~~~----~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 205 D------GSV----KEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred c------CcH----HHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 1 011 11222232 45689999993 233332 233222 11 12455688888654
No 175
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.00078 Score=66.64 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=28.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 233 (584)
...+.++|.+|+|||.||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987654 44456664
No 176
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.09 E-value=0.0062 Score=60.28 Aligned_cols=25 Identities=32% Similarity=0.202 Sum_probs=21.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+.|.|.|++|+|||+||+.+++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999998553
No 177
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.08 E-value=0.0067 Score=60.10 Aligned_cols=168 Identities=18% Similarity=0.125 Sum_probs=96.9
Q ss_pred cccccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|-.++-..+..++... -++..-|.|+|+.|.|||+|......+ .+.|.....+....+.-.. -.-.+..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~--dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQT--DKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchh--hHHHHHHHH
Confidence 45899999999998888732 123457889999999999999887776 3445444444433332222 122344444
Q ss_pred HHHh---CCCCCCCcChhhhHHHHHHHHcC------CCcEEEEeCCCCH----HH--HHHHhcC-CCCCCCCcEEEEEcc
Q 035646 253 SQLL---KLPNNGIWNVYDGINIIGRRLRH------KKVLLIIDDVVDI----KQ--LECLAGK-REWFGPGSRIVITSR 316 (584)
Q Consensus 253 ~~l~---~~~~~~~~~~~~~~~~l~~~L~~------k~~LlVlDdv~~~----~~--~~~l~~~-~~~~~~gs~IiiTTR 316 (584)
+++. ........+..+....+...|+. -++.+|+|.++-- .+ +-.++.. -....|=|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 4432 11122223344445555555532 3689999988521 11 2222211 112345667789999
Q ss_pred ccch-------hhccccceEeecCCCCHHHHHHHhc
Q 035646 317 DKHL-------LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 317 ~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
-... -.......++-++.++.++..++++
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r 216 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYR 216 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHH
Confidence 6532 2222233456677888888888887
No 178
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.0016 Score=63.43 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc------ccceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN------FEASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~ 233 (584)
..|..+|..+-....++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34555555333345899999999999999999998543222 25778886
No 179
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.07 E-value=0.0009 Score=59.29 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=33.9
Q ss_pred ccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 178 VGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 178 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577788888888777544445678999999999999999888753
No 180
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.07 E-value=0.0024 Score=65.27 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=54.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccccc-ceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChh-h---hHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFE-ASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVY-D---GINII 273 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~---~~~~l 273 (584)
..++|+|.+|+|||||++.+++.+..+.+ ..+++..+. .....+.++...+...+............ . ....+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999997765543 323333232 33456677777776654432221211111 1 11122
Q ss_pred HHHH--cCCCcEEEEeCCC
Q 035646 274 GRRL--RHKKVLLIIDDVV 290 (584)
Q Consensus 274 ~~~L--~~k~~LlVlDdv~ 290 (584)
.+++ ++++++||+|++.
T Consensus 212 Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHcCCCEEEEEeCcH
Confidence 2233 5799999999994
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00047 Score=63.25 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=26.3
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcc---cccceEEE
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSH---NFEASSCL 232 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~w~ 232 (584)
.|.|+|++|+||||||+.+++...- +++...|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5889999999999999999987543 35555553
No 182
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.06 E-value=0.0059 Score=69.96 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=41.3
Q ss_pred ccccccchhhHHHHHHHhhh----cCCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDK----ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
+...+|.+...+.+..++.. +.....++.++|++|+|||++|+.+++.....|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 56688999999888876642 222345799999999999999999999875544
No 183
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.04 E-value=0.0014 Score=78.61 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=39.9
Q ss_pred ccccccccEEEecCc----cCCCCccccccCeeEEEecCC-CCCCCCCCCCCCCceEEEcCCC-CccccC
Q 035646 517 FLKMINLRMLLIRNL----QLPEGLEYLSNELRLLERHGY-PLRSLPSNFQPDKIVELNMRYS-RIEQMW 580 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~----~lp~~i~~l~~~LryL~l~~~-~l~~lP~~i~L~~L~~L~l~~s-~i~~lp 580 (584)
+..+++|+.|+|++| .+|.+++.|. +|++|++++| .++.+|..++|.+|++|+|++| .++.+|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccC-CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc
Confidence 445666666666665 3566666666 6777777666 5666776666677777777665 344444
No 184
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.012 Score=62.78 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=100.4
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
+++||-+.....|...+..+. -...-...|+-|+||||+|+-++..+-..=. . .....+.-...+.|
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~----~-----~~ePC~~C~~Ck~I--- 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENG----P-----TAEPCGKCISCKEI--- 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCC----C-----CCCcchhhhhhHhh---
Confidence 567999999999999988553 1355678999999999999999985321100 0 00000000000111
Q ss_pred HhCCCCCCCcC----hhhhHHHHHHHH--------cCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccccc-
Q 035646 255 LLKLPNNGIWN----VYDGINIIGRRL--------RHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDKH- 319 (584)
Q Consensus 255 l~~~~~~~~~~----~~~~~~~l~~~L--------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~- 319 (584)
..+...+.-. ....++.+++.. +++.=+.|+|.|. +...+..|+..+..-......|+.|.+.+
T Consensus 83 -~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 83 -NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred -hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 1110111000 011222233322 2455689999996 45678888888776566666666666553
Q ss_pred hhh-ccccceEeecCCCCHHHHHHHhc---------CCchhHHHhhhhhhC
Q 035646 320 LLM-MHGVDEIYNLRELHDDKALQLFC---------GLPLALKVLGSFLYG 360 (584)
Q Consensus 320 v~~-~~~~~~~~~l~~L~~~ea~~Lf~---------G~PLal~~~~~~L~~ 360 (584)
+.. .......|.++.++.++-...+. --+-|+..++..-.+
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 322 23345678999999999988887 345566666655433
No 185
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.00 E-value=0.0022 Score=57.81 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=61.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH----hCCCC-CCCcChh------
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL----LKLPN-NGIWNVY------ 267 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l----~~~~~-~~~~~~~------ 267 (584)
..|-|++-.|.||||+|...+-+...+--.+.++.-+.+. ...+-...+..+ ..+ .+... ....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4678888889999999999888755554445554422221 122333333332 000 00000 0001111
Q ss_pred -hhHHHHHHHHc-CCCcEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 268 -DGINIIGRRLR-HKKVLLIIDDVV--------DIKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 268 -~~~~~l~~~L~-~k~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
...+..++.+. +.-=|+|||++. +.+++-.++.. ...+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence 12222334443 355699999983 23334344433 356778999999974
No 186
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.00 E-value=0.012 Score=55.65 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=41.8
Q ss_pred ccccccchhhHHHHHHHhh--hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccc
Q 035646 174 LEHLVGIDSHLKNLRLLMD--KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEA 228 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 228 (584)
-..++|-+...+.|.+-.. .......-|.+||.-|+|||+|++++.+.+...+..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3568999988888765433 112235678999999999999999999988777654
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.019 Score=58.08 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=78.8
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEec---hhhcccCChHHHHHHHHHHHhCCCC
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANV---REISEEGGLTSLQNQLLSQLLKLPN 260 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~---~~~s~~~~~~~~~~~i~~~l~~~~~ 260 (584)
.+.+...+..+ .-...+.++|+.|+||+++|..+++.+-..-+..+-.+.. -.....+++.-+. .....
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p~~ 84 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIPNR 84 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe-------cCCCc
Confidence 44555555433 2256789999999999999999998543221100000000 0000000000000 00000
Q ss_pred CC-CcChhhhHHHHH---HHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEcccc-chhhcc-ccc
Q 035646 261 NG-IWNVYDGINIIG---RRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDK-HLLMMH-GVD 327 (584)
Q Consensus 261 ~~-~~~~~~~~~~l~---~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~ 327 (584)
.. .....-.++.++ +.+ .+++-++|+|+++. ...-..++..+..-.+++.+|++|.+. .++... ...
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 00 000011233333 322 24556899999974 445566665555556677776666544 344332 234
Q ss_pred eEeecCCCCHHHHHHHhc
Q 035646 328 EIYNLRELHDDKALQLFC 345 (584)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~ 345 (584)
..+.+.+++.+++.+.+.
T Consensus 165 q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred eEeeCCCcCHHHHHHHHH
Confidence 678899999999888776
No 188
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0079 Score=63.96 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=60.2
Q ss_pred ccccccchhhHHHHHHHhhhc----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
-+.+=|.++.+.+|..++..- -...+-|.++|++|+|||.||.+++....-.|- . ++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-----~----isA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-----S----ISA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE-----e----ecc---
Confidence 366789999999998877521 123678999999999999999999987755442 1 111
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVV 290 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~ 290 (584)
-++++.+.+ .+.+...+.+.+.-..-++++++|+++
T Consensus 257 -----peivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 257 -----PEIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -----hhhhcccCc------ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 112222211 122222333344446689999999995
No 189
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.94 E-value=0.0043 Score=60.38 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=35.7
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..|..+|..+=....++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 34455566544344679999999999999999999765433445667775
No 190
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.94 E-value=0.0024 Score=60.32 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=63.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
.++.|+|+.|+||||++..++..+.......++... .. ........ ..+...... ..+.......++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-----~~--~E~~~~~~-~~~i~q~~v-g~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-----DP--IEFVHESK-RSLINQREV-GLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-----CC--ccccccCc-cceeeeccc-CCCccCHHHHHHHHhc
Confidence 478999999999999999988866544443444320 10 00000000 000000000 1112334566778888
Q ss_pred CCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccch
Q 035646 279 HKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHL 320 (584)
Q Consensus 279 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 320 (584)
..+=++++|.+.+.+......... ..|..++.|+-...+
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 888899999998887766555432 245567777766544
No 191
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.93 E-value=0.00047 Score=63.32 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCCceeeeecccchhccccCc-ccceeEEEeccCcccccccccccccccccccccccEEEec
Q 035646 451 DLLKEICQQIVKRQSPEDPGKRSRLWKEADIHHMLTRNT-GTKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIR 529 (584)
Q Consensus 451 ~lv~~~a~~i~~~~~~~~~~~~~rl~~~~~~~~~l~~~~-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~ 529 (584)
++..++.+++++-. ++-+.+.+..+.+....+.+-. ....++.+.+....- ..+ +.|..+++|++|+++
T Consensus 3 ~lt~~~i~~~~~~~---n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I---~~l----~~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 3 RLTANMIEQIAQYN---NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI---TKL----EGLPGLPRLKTLDLS 72 (175)
T ss_dssp ------------------------------------S--TT-TT--EEE-TTS-----S------TT----TT--EEE--
T ss_pred cccccccccccccc---cccccccccccccccccccchhhhhcCCCEEECCCCCC---ccc----cCccChhhhhhcccC
Confidence 34444444444322 2333444544444443332221 134555555544311 112 346677888888888
Q ss_pred CccCCC---Ccc-ccccCeeEEEecCCCCCCCCCC--C-CCCCceEEEcCCCCccccC
Q 035646 530 NLQLPE---GLE-YLSNELRLLERHGYPLRSLPSN--F-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 530 ~~~lp~---~i~-~l~~~LryL~l~~~~l~~lP~~--i-~L~~L~~L~l~~s~i~~lp 580 (584)
++.+-. .+. .++ +|+.|+++++.|..+-+- + .+++|++|+|.++.|.+-+
T Consensus 73 ~N~I~~i~~~l~~~lp-~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 73 NNRISSISEGLDKNLP-NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp SS---S-CHHHHHH-T-T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred CCCCCccccchHHhCC-cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 875432 232 366 788888888888776542 2 5788888888888776543
No 192
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.92 E-value=0.00078 Score=58.02 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=21.4
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 193
>PRK04296 thymidine kinase; Provisional
Probab=96.91 E-value=0.0023 Score=60.06 Aligned_cols=111 Identities=16% Similarity=0.038 Sum_probs=60.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC--CCcChhhhHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN--GIWNVYDGINIIGRR 276 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~ 276 (584)
.++.|+|..|.||||+|..++.+...+...+..+. . ......+ ...+++++. .... ......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~----~~~i~~~lg-~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYG----EGKVVSRIG-LSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccccc----CCcEecCCC-CcccceEeCChHHHHHHHHh-
Confidence 47889999999999999999988755544444332 0 0011111 112222221 1000 01222333333333
Q ss_pred HcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 277 LRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 277 L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
..++.-++|+|.+.- .+++..+...+. ..|..|++|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 233556999999953 344444443322 46888999998853
No 194
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.91 E-value=0.0056 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987554
No 195
>PRK07261 topology modulation protein; Provisional
Probab=96.89 E-value=0.0024 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 196
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.059 Score=55.13 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccc-cchhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 279 HKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRD-KHLLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 279 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
++.-++|+|+++ +.+....|+..+..-.+++.+|++|.+ ..++.. ......+.+.+++.++..+.+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 345588999997 456677777666655677766655544 444433 2234678999999999998886
No 197
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.88 E-value=0.00065 Score=80.45 Aligned_cols=85 Identities=16% Similarity=0.265 Sum_probs=60.5
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCC-CCCCCC-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~ 564 (584)
...++.+.+....- ....|..|.++++|++|+|++|. +|..++.+. +|++|++++|++. .+|..+ ++.
T Consensus 163 l~~L~~L~L~~n~l-----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 163 FSSLKVLDLGGNVL-----VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred CCCCCEEECccCcc-----cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCccCCcCChhHhcCC
Confidence 34555555544311 11234677888888888888774 577788887 8888888888766 688888 888
Q ss_pred CceEEEcCCCCcc-ccCC
Q 035646 565 KIVELNMRYSRIE-QMWC 581 (584)
Q Consensus 565 ~L~~L~l~~s~i~-~lp~ 581 (584)
+|++|+|++|++. .+|.
T Consensus 237 ~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CCCEEECcCceeccccCh
Confidence 9999999888775 4454
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.87 E-value=0.0072 Score=68.81 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=42.7
Q ss_pred ccccccchhhHHHHHHHhhhc----CCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE----CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
+...+|.++..+.|..+|... .....+++++|++|+||||+|+.++......|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 778999999999998887631 12346899999999999999999998765443
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.074 Score=53.87 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=46.0
Q ss_pred CCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEcccc-chhhcc-ccceEeecCCCCHHHHHHHhc
Q 035646 279 HKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDK-HLLMMH-GVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 279 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+++=++|+|+++. ......++..+..-.+++.+|++|.+. .++... .....+.+.+++.+++.+.+.
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 3456899999974 455666766666556777766666554 444432 234678999999999988887
No 200
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.85 E-value=0.0013 Score=66.89 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=41.9
Q ss_pred ccccccchhhHHHHHHHhhhcC----CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC----NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++|.++.++++.+++.... ...++++|+|++|+||||||..+++.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999887432 2358899999999999999999998653
No 201
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.84 E-value=0.0067 Score=59.09 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..|.++|..+=....++.|.|.+|+|||+||.+++......-+.++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34555666544444689999999999999999998876444456677775
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0049 Score=60.53 Aligned_cols=73 Identities=23% Similarity=0.110 Sum_probs=45.1
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
...-+.++|.+|+|||.||.++++++...--.+.++. ..++..++...... ......+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~---------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDE---------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhc---------CchHHHHHHH
Confidence 3467899999999999999999998774334455554 33444444443211 1112223332
Q ss_pred HcCCCcEEEEeCC
Q 035646 277 LRHKKVLLIIDDV 289 (584)
Q Consensus 277 L~~k~~LlVlDdv 289 (584)
+ .+-=||||||+
T Consensus 165 l-~~~dlLIiDDl 176 (254)
T COG1484 165 L-KKVDLLIIDDI 176 (254)
T ss_pred h-hcCCEEEEecc
Confidence 2 23458999999
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0019 Score=71.77 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=87.5
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc-cccc-----eEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH-NFEA-----SSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~-----~~w~~~~~~~s~~~~~~~~~ 248 (584)
...+||++|++++.+.|.....+ --.++|.+|+|||+++.-++.++.. +-+. .++-- ++..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KN--NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL---------D~g~-- 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKN--NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL---------DLGS-- 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCC--CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe---------cHHH--
Confidence 66899999999999999844322 2346799999999999999987543 2221 11111 1111
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHc-CCCcEEEEeCCCC-----------HHHHHHHhcCCCCCCCC-cE-EEEE
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRLR-HKKVLLIIDDVVD-----------IKQLECLAGKREWFGPG-SR-IVIT 314 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~g-s~-IiiT 314 (584)
- . ....--.+.++....+.+.++ ..+..|++|.+.+ .+.-.-+.|.+. .| -+ |-.|
T Consensus 237 -----L-v-AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA---RGeL~~IGAT 306 (786)
T COG0542 237 -----L-V-AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---RGELRCIGAT 306 (786)
T ss_pred -----H-h-ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh---cCCeEEEEec
Confidence 0 1 111122344455555555553 4589999999842 222333334432 23 23 4456
Q ss_pred ccccch------hhccccceEeecCCCCHHHHHHHhc
Q 035646 315 SRDKHL------LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 315 TR~~~v------~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
|-++.- +........+.|.+-+.+++.+.+.
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILR 343 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHH
Confidence 644311 1112234678999999999999998
No 204
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0075 Score=68.19 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=40.4
Q ss_pred ccccccchhhHHHHHHHhhhc-------CCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-------CNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++|.+..++.|...+... ......+.++|++|+|||+||+.++....
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999998887632 12245789999999999999999998774
No 205
>PRK06762 hypothetical protein; Provisional
Probab=96.81 E-value=0.0082 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=22.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|.|+|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 206
>PRK06696 uridine kinase; Validated
Probab=96.77 E-value=0.0019 Score=62.40 Aligned_cols=45 Identities=18% Similarity=0.089 Sum_probs=35.9
Q ss_pred chhhHHHHHHHhhh-cCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 180 IDSHLKNLRLLMDK-ECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 180 R~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
|++.+++|.+.+.. ..+...+|+|.|.+|+||||||+.++..+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56677777776653 3445789999999999999999999987654
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.76 E-value=0.002 Score=60.56 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=59.5
Q ss_pred hhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh--hcccccceEEEEechhhcccCC-----hH----HHHH
Q 035646 181 DSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL--TSHNFEASSCLANVREISEEGG-----LT----SLQN 249 (584)
Q Consensus 181 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~w~~~~~~~s~~~~-----~~----~~~~ 249 (584)
..+-....+.|. ...++.+.|++|.|||.||.+.+-+ ....|+..++......+.+.-+ +. ....
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 334444444444 2358999999999999999988864 2466777777654322111100 00 0011
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHH----------HHHcCC---CcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEE
Q 035646 250 QLLSQLLKLPNNGIWNVYDGINIIG----------RRLRHK---KVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVIT 314 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~~l~----------~~L~~k---~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiT 314 (584)
-+...+..-- .. ...+.+. ..++++ ..++|+|++. +.+++..++... +.|||+|++
T Consensus 82 p~~d~l~~~~--~~----~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~ 152 (205)
T PF02562_consen 82 PIYDALEELF--GK----EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIIT 152 (205)
T ss_dssp HHHHHHTTTS---T----TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEE
T ss_pred HHHHHHHHHh--Ch----HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEe
Confidence 1111111100 00 1111111 233443 5699999995 567888887664 789999997
Q ss_pred cccc
Q 035646 315 SRDK 318 (584)
Q Consensus 315 TR~~ 318 (584)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 6443
No 208
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0043 Score=57.40 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=30.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..+|.+.|++|+||||+|+.++......+....++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 468999999999999999999998877766666663
No 209
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.75 E-value=0.0009 Score=79.25 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=65.6
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCC-CCCCCC-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~ 564 (584)
...++.+.+..+.- ....|..|.++++|+.|+|++|. +|..++.++ +|++|++++|.+. .+|..+ ++.
T Consensus 187 l~~L~~L~L~~n~l-----~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 187 LTSLEFLTLASNQL-----VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred CcCCCeeeccCCCC-----cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCEEECcCceeccccChhHhCCC
Confidence 34556665544311 11234788999999999999874 678889998 9999999999875 789999 999
Q ss_pred CceEEEcCCCCcc-ccCC
Q 035646 565 KIVELNMRYSRIE-QMWC 581 (584)
Q Consensus 565 ~L~~L~l~~s~i~-~lp~ 581 (584)
+|++|+|++|++. .+|.
T Consensus 261 ~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CCCEEECcCCeeeccCch
Confidence 9999999999875 4554
No 210
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.74 E-value=0.017 Score=64.66 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=80.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
+-|.|+|++|+|||++|+.++......| +.+. .+ .+.. ...+. ........+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is----~~------~~~~----~~~g~------~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS----GS------DFVE----MFVGV------GASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe----hH------HhHH----hhhcc------cHHHHHHHHHHHHh
Confidence 4599999999999999999998765443 1111 00 0100 00000 01112222333334
Q ss_pred CCCcEEEEeCCCCHH----------------HHHHHhcCCCCC--CCCcEEEEEccccchhhc-----cccceEeecCCC
Q 035646 279 HKKVLLIIDDVVDIK----------------QLECLAGKREWF--GPGSRIVITSRDKHLLMM-----HGVDEIYNLREL 335 (584)
Q Consensus 279 ~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L 335 (584)
..+.+|++|+++... .+..++..+..+ ..+.-+|.||..+..+.. ...+..+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 578999999996431 233333332222 234455557776543221 124567788888
Q ss_pred CHHHHHHHhc----CCchh----HHHhhhhhhCCCHHHHHHHHHH
Q 035646 336 HDDKALQLFC----GLPLA----LKVLGSFLYGKTTKEWESALKR 372 (584)
Q Consensus 336 ~~~ea~~Lf~----G~PLa----l~~~~~~L~~~~~~~w~~~l~~ 372 (584)
+.++-.+++. ..|+. +..++....+.+..+...++..
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~e 367 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 367 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHH
Confidence 8887777777 44543 2334444334445555555544
No 211
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.74 E-value=0.0062 Score=63.11 Aligned_cols=50 Identities=20% Similarity=0.065 Sum_probs=36.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..+.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666533333579999999999999999999987665545566764
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.022 Score=58.68 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=26.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
.++|+|+|++|+||||++..++.....+-..+.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 57999999999999999999998665432234444
No 213
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0057 Score=66.13 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=44.7
Q ss_pred ccccccchhhHHHHHHHhh----hcCCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 174 LEHLVGIDSHLKNLRLLMD----KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
++.-+|.++-.+++.+.+. .++-..++++.+|++|+|||++|+.++......|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 6777899999999988886 3344568999999999999999999999776655
No 214
>PHA00729 NTP-binding motif containing protein
Probab=96.69 E-value=0.01 Score=56.63 Aligned_cols=27 Identities=30% Similarity=-0.012 Sum_probs=23.4
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998753
No 215
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0043 Score=62.58 Aligned_cols=98 Identities=15% Similarity=0.006 Sum_probs=55.8
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCC----
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKL---- 258 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~---- 258 (584)
...|..+|. .+=...+++-|+|++|+||||||.+++......-..++|++.- ...+ . ..+..+.-.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E----~~~~--~---~~a~~lGvd~~~l 110 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE----HALD--P---VYARKLGVDIDNL 110 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc----chhH--H---HHHHHcCCCHHHe
Confidence 344555664 3333457999999999999999999888665555566777521 1111 1 112221100
Q ss_pred CCCCCcChhhhHHHHHHHHc-CCCcEEEEeCCC
Q 035646 259 PNNGIWNVYDGINIIGRRLR-HKKVLLIIDDVV 290 (584)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~ 290 (584)
........++....+...++ +..-++|+|.+-
T Consensus 111 ~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 111 LVSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred EEecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 00112233444444544443 467799999983
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.66 E-value=0.0041 Score=58.52 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=26.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
++++.++|+.|+||||.+..++.+.+.+-..+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999987665533344443
No 217
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0064 Score=59.79 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=48.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh----cccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT----SHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINII 273 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 273 (584)
-|+|.++|++|.|||+|+++++++. .+.|.....+. +. -..++...++. ...-.......+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----in----shsLFSKWFsE-------SgKlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----IN----SHSLFSKWFSE-------SGKLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Ee----hhHHHHHHHhh-------hhhHHHHHHHHH
Confidence 4899999999999999999999953 34566555554 11 12223222222 122334445556
Q ss_pred HHHHcCCCc--EEEEeCCCCH
Q 035646 274 GRRLRHKKV--LLIIDDVVDI 292 (584)
Q Consensus 274 ~~~L~~k~~--LlVlDdv~~~ 292 (584)
.+.+.++.. .+.+|.|++.
T Consensus 242 ~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHH
Confidence 666666654 4457888543
No 218
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.65 E-value=0.0052 Score=62.05 Aligned_cols=50 Identities=18% Similarity=0.013 Sum_probs=36.5
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
...|..+|. .+=...+++-|+|++|+||||||.+++......-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 344555564 33334579999999999999999998876655556677776
No 219
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.63 E-value=0.035 Score=60.52 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=41.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++|+...++++.+.+..-......|.|+|..|+|||++|+.+.+.-.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 5689999999999888875544556899999999999999999998543
No 220
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.63 E-value=0.0025 Score=58.56 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=27.7
Q ss_pred ccccccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCcccc
Q 035646 519 KMINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 519 ~~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~l 579 (584)
.+.+|++|+|++|.+- +++..|+ +|+.|++++++|+++++.+ .+.+|++|+|++++|..+
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~-~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLP-RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----T-T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred hhcCCCEEECCCCCCccccCccChh-hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 5678889999988543 3677777 8999999999999987766 488999999999888765
No 221
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.62 E-value=0.0031 Score=61.99 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=54.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCC------CCCCCcChhh---
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKL------PNNGIWNVYD--- 268 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 268 (584)
...++|.|.+|+|||+|+..+++..+.+|+..+++..+++ ....+.++.+.+...-... ...+......
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999998878877777764432 2233444444443320000 0001111111
Q ss_pred --hHHHHHHHH--c-CCCcEEEEeCCC
Q 035646 269 --GINIIGRRL--R-HKKVLLIIDDVV 290 (584)
Q Consensus 269 --~~~~l~~~L--~-~k~~LlVlDdv~ 290 (584)
..-.+.+++ + ++.+|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 111244555 3 889999999994
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.13 Score=52.65 Aligned_cols=152 Identities=12% Similarity=0.066 Sum_probs=79.8
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc-----cceEEEEec-hhhcccCChHHHHHHHHHHHhC
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-----EASSCLANV-REISEEGGLTSLQNQLLSQLLK 257 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~w~~~~-~~~s~~~~~~~~~~~i~~~l~~ 257 (584)
-+++.+.+..+ .-.....++|+.|+||+++|..++..+-..- +++..-.+- -.....+++..+ ..
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 34455555433 2357888999999999999999998653210 111000000 000001111000 00
Q ss_pred CCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEcccc-chhhc-cccce
Q 035646 258 LPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDK-HLLMM-HGVDE 328 (584)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~ 328 (584)
......-..+ .++.+.+.+ .+++-++|+|+++ +.+.-..++..+..-.+++.+|++|.+. .++.. .....
T Consensus 82 ~~~~~~I~id-qiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 82 EKGKSSLGVD-AVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred ccccccCCHH-HHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0000000111 122233333 2456689999997 4556667776666556777776666654 34433 22335
Q ss_pred EeecCCCCHHHHHHHhc
Q 035646 329 IYNLRELHDDKALQLFC 345 (584)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~ 345 (584)
.+.+.+++.+++.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 161 LHYLAPPPEQYALTWLS 177 (334)
T ss_pred cccCCCCCHHHHHHHHH
Confidence 67899999999888774
No 223
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.002 Score=56.99 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=27.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc-ccceEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCL 232 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~ 232 (584)
--|+|+|++|+||||+++.+++..+.. |...-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 568999999999999999999977665 6544333
No 224
>PRK07667 uridine kinase; Provisional
Probab=96.61 E-value=0.0042 Score=58.43 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
++.+.+.+....+...+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555665444556899999999999999999999876543
No 225
>PRK09354 recA recombinase A; Provisional
Probab=96.59 E-value=0.0063 Score=61.96 Aligned_cols=98 Identities=14% Similarity=-0.007 Sum_probs=57.2
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCC----
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKL---- 258 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~---- 258 (584)
...|..+|. .+=...+++-|+|++|+||||||.+++......-..++|++.- ...+. ..+..+.-.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E----~s~~~-----~~a~~lGvdld~l 115 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE----HALDP-----VYAKKLGVDIDNL 115 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc----cchHH-----HHHHHcCCCHHHe
Confidence 445556665 3333467999999999999999999987665555677888622 11111 122221100
Q ss_pred CCCCCcChhhhHHHHHHHHc-CCCcEEEEeCCC
Q 035646 259 PNNGIWNVYDGINIIGRRLR-HKKVLLIIDDVV 290 (584)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~ 290 (584)
-.....+.++....+...++ +..-++|+|.|-
T Consensus 116 li~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 116 LVSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 00112234444444544443 457799999983
No 226
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.57 E-value=0.012 Score=52.53 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=55.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
.+++|.|..|.|||||++.++.... .....+++.....+.--+. ...-+...-.+.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHHHh
Confidence 5899999999999999999987543 2234444431100000000 1111222334566667
Q ss_pred CCCcEEEEeCCC---CHHHHHHHhcCCCCCCCCcEEEEEccccchh
Q 035646 279 HKKVLLIIDDVV---DIKQLECLAGKREWFGPGSRIVITSRDKHLL 321 (584)
Q Consensus 279 ~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 321 (584)
.++-++++|+.. +......+...+... +..||++|.+....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 788899999883 333333222222211 24577777776544
No 227
>PRK04328 hypothetical protein; Provisional
Probab=96.57 E-value=0.013 Score=57.40 Aligned_cols=49 Identities=10% Similarity=-0.036 Sum_probs=35.3
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..|.++|..+=....++.|.|.+|+|||+||.+++......-+.++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455556543334579999999999999999998876444456677775
No 228
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.059 Score=54.73 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=80.4
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCC-
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGI- 263 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~- 263 (584)
+.|.+.+..+. -.....++|+.|+||+++|..++..+-..-+.. ....+.-.....+ .....++.
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC~~~----~~g~HPD~~ 77 (325)
T PRK06871 12 QQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSCHLF----QAGNHPDFH 77 (325)
T ss_pred HHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHH----hcCCCCCEE
Confidence 44555554332 246788999999999999999998543211100 0000000000001 00011100
Q ss_pred -----cChhhhHHHHH---HHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEcccc-chhhc-ccc
Q 035646 264 -----WNVYDGINIIG---RRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDK-HLLMM-HGV 326 (584)
Q Consensus 264 -----~~~~~~~~~l~---~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~ 326 (584)
....-.++.++ +.+ .+++=++|+|+++. ......++..+..-.+++.+|++|.+. .++.. ...
T Consensus 78 ~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 78 ILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 00011222222 332 24556888999974 456667776666556777777777655 44433 223
Q ss_pred ceEeecCCCCHHHHHHHhc
Q 035646 327 DEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 327 ~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+.+.+++.+++.+.+.
T Consensus 158 C~~~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQ 176 (325)
T ss_pred ceEEeCCCCCHHHHHHHHH
Confidence 4678999999999988776
No 229
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.013 Score=59.71 Aligned_cols=97 Identities=21% Similarity=0.133 Sum_probs=57.4
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhC-CCCCC
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLK-LPNNG 262 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~-~~~~~ 262 (584)
+.++.+.|..+--...+|.|-|-+|||||||..+++.++.... .+.++. ......++... +..+.- .....
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklR-A~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLR-ADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHH-HHHhCCCccceE
Confidence 4566666653322347899999999999999999999988776 677764 33333333222 222211 11111
Q ss_pred CcChhhhHHHHHHHH-cCCCcEEEEeCC
Q 035646 263 IWNVYDGINIIGRRL-RHKKVLLIIDDV 289 (584)
Q Consensus 263 ~~~~~~~~~~l~~~L-~~k~~LlVlDdv 289 (584)
.-. +...+.+.+.+ +.++-++|+|-+
T Consensus 151 l~a-Et~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 151 LLA-ETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred Eeh-hcCHHHHHHHHHhcCCCEEEEecc
Confidence 111 12233333333 468999999998
No 230
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.55 E-value=0.00083 Score=67.64 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=46.4
Q ss_pred cccccccccccccEEEecCccC--------------------------C-CCccccccCeeEEEecCCCCCCCCCCC-CC
Q 035646 512 TSSNSFLKMINLRMLLIRNLQL--------------------------P-EGLEYLSNELRLLERHGYPLRSLPSNF-QP 563 (584)
Q Consensus 512 ~~~~~~~~~~~LrvL~L~~~~l--------------------------p-~~i~~l~~~LryL~l~~~~l~~lP~~i-~L 563 (584)
.+|..+..+..||.|+|+.+.+ + .+++.+. +|..|+|+++.+.++|+.+ ++
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~-nL~tLDL~nNdlq~IPp~Lgnm 527 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR-NLTTLDLQNNDLQQIPPILGNM 527 (565)
T ss_pred hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhh-hcceeccCCCchhhCChhhccc
Confidence 3456666777788888866421 1 1255554 6777788777788888887 78
Q ss_pred CCceEEEcCCCCccccCC
Q 035646 564 DKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 564 ~~L~~L~l~~s~i~~lp~ 581 (584)
.+|++|+|.++.+. +|.
T Consensus 528 tnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR-QPR 544 (565)
T ss_pred cceeEEEecCCccC-CCH
Confidence 88888888887776 553
No 231
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.55 E-value=0.00071 Score=68.14 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=57.3
Q ss_pred ccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
+..+.+.+|.||||.++ ..|+.+|.|. +|.||+++++.|+.||.++ +| ||..|-+.|+.++++-
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHH
Confidence 45568999999999998 4799999998 9999999999999999999 99 9999999999887753
No 232
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0057 Score=57.59 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=26.7
Q ss_pred CceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..+.+|||.|.+|+||||+|+.++..++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346899999999999999999999988765
No 233
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.50 E-value=0.0069 Score=61.47 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=26.3
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
.++.++|||++|+|||.+|+.++......|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 468999999999999999999999876543
No 234
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.49 E-value=0.012 Score=58.11 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=59.8
Q ss_pred hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCC
Q 035646 183 HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNG 262 (584)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~ 262 (584)
.++.+..++... ..++.|.|..|+||||++..+...+...-..++.+.+..+..- .+. .++ ...
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q~----~v~ 131 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQV----QVN 131 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eEE----EeC
Confidence 344455555422 3589999999999999999988766432222333332211110 000 000 000
Q ss_pred CcChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcC
Q 035646 263 IWNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGK 301 (584)
Q Consensus 263 ~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~ 301 (584)
..........++..|+..+=.++++++.+.+....++..
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 011123456678888889999999999998876655443
No 235
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.47 E-value=0.011 Score=55.87 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.+.+...+..+ -+++.|.|.+|.|||+++..+...+...
T Consensus 7 ~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34444455422 3688899999999999999988766554
No 236
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.46 E-value=0.019 Score=52.50 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=59.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEe---chhhcccCCh--HHHHHHHHHHHhCCCCCCCcChhhhHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLAN---VREISEEGGL--TSLQNQLLSQLLKLPNNGIWNVYDGINII 273 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~---~~~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 273 (584)
.+++|.|..|.|||||++.++...... ...+++.. +..+.+...+ ..+.+.+.. ........-+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHHH
Confidence 589999999999999999998754321 22222211 1111222111 122222211 0111222223334456
Q ss_pred HHHHcCCCcEEEEeCCC---CHHHHHHHhcCCCCCCCCcEEEEEccccchh
Q 035646 274 GRRLRHKKVLLIIDDVV---DIKQLECLAGKREWFGPGSRIVITSRDKHLL 321 (584)
Q Consensus 274 ~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 321 (584)
.+.+-.++-++++|+-- +....+.+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 66677788899999873 222222222222211 35577777776554
No 237
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0095 Score=64.43 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=45.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccccc-ceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFE-ASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
...|.|.|..|+|||+||+++++.+...-. .+.++. ... .....+..++..+ ...+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~-l~~~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CST-LDGSSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chh-ccchhHHHHHHHH------------------HHHHHHH
Confidence 467899999999999999999998764322 222332 111 1111223332222 2234556
Q ss_pred HcCCCcEEEEeCCC
Q 035646 277 LRHKKVLLIIDDVV 290 (584)
Q Consensus 277 L~~k~~LlVlDdv~ 290 (584)
+...+-++||||++
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 67789999999995
No 238
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.42 E-value=0.0058 Score=69.08 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=33.3
Q ss_pred cccEEEecCccCCCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccCC
Q 035646 522 NLRMLLIRNLQLPEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 522 ~LrvL~L~~~~lp~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp~ 581 (584)
+|+.|+|++|.+..-...++.+|++|+++++++..+|..+. .+|++|+|++|+++.+|.
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 242 TIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred cccEEECcCCccCcCChhHhCCCCEEECcCCccCccccccC-CCCcEEECCCCccccCcc
Confidence 46666666664332212233356666666666666666552 356666666666666654
No 239
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.38 E-value=0.026 Score=52.42 Aligned_cols=120 Identities=22% Similarity=0.211 Sum_probs=61.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHH------HHHHHHHHhC-----CCCCCCcChh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSL------QNQLLSQLLK-----LPNNGIWNVY 267 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~------~~~i~~~l~~-----~~~~~~~~~~ 267 (584)
.+++|.|..|.|||||.+.++-... .....+++... ... ....... ..+++..+.- ........-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 5899999999999999999987543 23444554321 011 1111111 1112222211 1111112222
Q ss_pred hhHHHHHHHHcCCCcEEEEeCCC---CHHHHHHHhcCCCCC-CC-CcEEEEEccccchh
Q 035646 268 DGINIIGRRLRHKKVLLIIDDVV---DIKQLECLAGKREWF-GP-GSRIVITSRDKHLL 321 (584)
Q Consensus 268 ~~~~~l~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IiiTTR~~~v~ 321 (584)
...-.+.+.+-..+-++++|+.- +....+.+...+... .. +..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23334566677788999999883 333333322222111 22 56788888776543
No 240
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.037 Score=57.56 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=23.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++|.++|+.|+||||.+..++..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988654
No 241
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.37 E-value=0.0097 Score=61.35 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=64.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
..+.|.|+.|+||||+...+...+.......++.. ... ..-..... ..+....... .+.......++..|+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-----Edp--~E~~~~~~-~~~i~q~evg-~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-----EDP--IEYVHRNK-RSLINQREVG-LDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-----cCC--hhhhccCc-cceEEccccC-CCCcCHHHHHHHhhc
Confidence 68999999999999999999887655544455442 111 11000000 0000000111 112234566788889
Q ss_pred CCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccch
Q 035646 279 HKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHL 320 (584)
Q Consensus 279 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 320 (584)
..+=.|++|.+.+.+.....+... ..|..|+.|.-....
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 999999999999888776544332 345556666655433
No 242
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.36 E-value=0.012 Score=60.04 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=34.2
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc------cceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF------EASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~ 233 (584)
..+..+|..+=....++-|+|.+|+|||+||.+++....... ..++|++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 445555553333457899999999999999999987543211 3677776
No 243
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.34 E-value=0.02 Score=58.52 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=38.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..++|+...++++.+.+..-......|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998888754444567899999999999999998863
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.32 E-value=0.021 Score=57.09 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=23.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.++++|+|++|+||||++..++.....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999886643
No 245
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.31 E-value=0.0089 Score=58.82 Aligned_cols=50 Identities=18% Similarity=0.030 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc--c----cccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS--H----NFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~----~f~~~~w~~ 233 (584)
.+.|.++|..+=....+.=|+|.+|+|||+|+.+++-... . .-..++|++
T Consensus 24 ~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 24 CKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp SHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred CHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 3456666653322245888999999999999998875432 1 123477776
No 246
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.014 Score=61.09 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=35.2
Q ss_pred ccccccchh---hHHHHHHHhhhcC------Cc-eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 174 LEHLVGIDS---HLKNLRLLMDKEC------NV-VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 174 ~~~~vGR~~---~~~~l~~~L~~~~------~~-~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.++.-|-|+ |++++.+.|.++. +. ++-|.++|++|.|||-||++++-..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 355667775 4555666665432 11 5789999999999999999998644
No 247
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.054 Score=55.22 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccccc-hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 280 KKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDKH-LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 280 k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
++-++|+|+++ +......++..+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 34455678885 34444444433333334566777776654 3322 1234578899999999988876
No 248
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.11 Score=56.18 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=91.8
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
+++=|.++..++|.+...- +-+..+-|.++|+||+|||++|+.+++.-+..|-.+ ..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------kg--- 501 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------KG--- 501 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------cC---
Confidence 3344577777777655431 224568899999999999999999999877666321 00
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHH-HHHHcCCCcEEEEeCCCCHH-------------HHHHHhcCCCCCCCCc
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINII-GRRLRHKKVLLIIDDVVDIK-------------QLECLAGKREWFGPGS 309 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs 309 (584)
.++++...+. .+..+..+ .+.-+-.+.++.||.++... .+..++..+.......
T Consensus 502 -----pEL~sk~vGe-------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 502 -----PELFSKYVGE-------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred -----HHHHHHhcCc-------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 0122221111 11222222 22223467899999885321 2445555444333333
Q ss_pred EEEE--Eccccchh-----hccccceEeecCCCCHHHHHHHhc----CCchh----HHHhhhhhhCCCHHHHHHHHH
Q 035646 310 RIVI--TSRDKHLL-----MMHGVDEIYNLRELHDDKALQLFC----GLPLA----LKVLGSFLYGKTTKEWESALK 371 (584)
Q Consensus 310 ~Iii--TTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~----G~PLa----l~~~~~~L~~~~~~~w~~~l~ 371 (584)
.|+| .|..++.. .--..+..+.++.-+.+.-.++|. .+|++ +..++..-.+.+..+...+.+
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 3333 33322221 112255677777777777777777 44443 334444333344444444443
No 249
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.27 E-value=0.016 Score=61.94 Aligned_cols=50 Identities=22% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..|.++|..+=....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 55666666544334579999999999999999999886655434566765
No 250
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.27 E-value=0.011 Score=50.87 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=53.2
Q ss_pred EEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccC
Q 035646 21 VFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRS 83 (584)
Q Consensus 21 vFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 83 (584)
|||.|+ +| ..+++.+...|+..|+.+.+=.+....|..+.+.+.+.+.+++.+|++++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899987 77 6799999999998898877555567889999999999999999999999985
No 251
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.27 E-value=0.014 Score=53.21 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=60.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH--hCCCC-CCCcC-------hhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL--LKLPN-NGIWN-------VYD 268 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l--~~~~~-~~~~~-------~~~ 268 (584)
..|-|++-.|.||||.|...+.+...+--.+..+.-+.+. ...+-...+..+.-.+ .+... ....+ ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5778888899999999999888755443334333222111 1123333333320000 01100 00011 112
Q ss_pred hHHHHHHHHcC-CCcEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 269 GINIIGRRLRH-KKVLLIIDDVV--------DIKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 269 ~~~~l~~~L~~-k~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
.....++.+.. .-=|+|||.+. +.+++-.++.. ..++..||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence 22333444443 45699999983 33344444433 356789999999874
No 252
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.27 E-value=0.064 Score=59.00 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=40.4
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...++|....++++.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 3578999999999988887544444578899999999999999998754
No 253
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.26 E-value=0.038 Score=59.98 Aligned_cols=178 Identities=11% Similarity=0.104 Sum_probs=108.5
Q ss_pred ccccccchhhHHHHHHHhhh---cCCceEEEEEEecCCccHHHHHHHHHhhhc-----ccccceEEEEechhhcccCChH
Q 035646 174 LEHLVGIDSHLKNLRLLMDK---ECNVVCMIGICVMGGIGKTTLAGVVYDLTS-----HNFEASSCLANVREISEEGGLT 245 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~~w~~~~~~~s~~~~~~ 245 (584)
+..+-+|+.|..+|...+.. .......+-|.|.+|.|||..+..|.+.+. ..-+...++. +. ...-....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-ceeecCHH
Confidence 56788999999999988862 212345899999999999999999998432 1222222332 11 23344578
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc-----CCCcEEEEeCCCC-----HHHHHHHhcCCCCCCCCcEEEEEc
Q 035646 246 SLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR-----HKKVLLIIDDVVD-----IKQLECLAGKREWFGPGSRIVITS 315 (584)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~IiiTT 315 (584)
+++..|...+.+... ........+..+.. .+++++++|+++. .+.+-.++... ..+++|++|-+
T Consensus 473 ~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t~~~sKLvvi~ 546 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--TLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--cCCCCceEEEE
Confidence 888888888655433 33444555555543 4678999999853 23344444322 25678776544
Q ss_pred ccc-----------chhhccccceEeecCCCCHHHHHHHhc----CC----chhHHHhhhhhhC
Q 035646 316 RDK-----------HLLMMHGVDEIYNLRELHDDKALQLFC----GL----PLALKVLGSFLYG 360 (584)
Q Consensus 316 R~~-----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~----G~----PLal~~~~~~L~~ 360 (584)
=.. .+...+|. ..+...|-+.++-.+++. |+ +-|+..++.-+..
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAa 609 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAA 609 (767)
T ss_pred ecccccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHh
Confidence 221 11122222 346777888888777776 33 5566666655543
No 254
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.26 E-value=0.0055 Score=69.25 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=50.0
Q ss_pred ccccEEEecCccCCCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccCCCC
Q 035646 521 INLRMLLIRNLQLPEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 521 ~~LrvL~L~~~~lp~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp~~~ 583 (584)
.+|+.|+|++|.+..-...++.+|+.|++++|.+..+|..+. .+|++|+|+++++..+|+++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~-s~L~~L~Ls~N~L~~LP~~l 281 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLP-SALQSLDLFHNKISCLPENL 281 (754)
T ss_pred cCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHh-CCCCEEECcCCccCcccccc
Confidence 589999999985443222345589999999999999999872 48999999999999998753
No 255
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.035 Score=52.72 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=37.7
Q ss_pred ccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 176 HLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
.+=|.+-..+++.+.... +-+..+-|.++|++|.|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345677667777665532 224578899999999999999999998766554
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.042 Score=50.52 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=62.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC-C-------CcChhhhH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN-G-------IWNVYDGI 270 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~-~-------~~~~~~~~ 270 (584)
.+++|.|..|.|||||.+.++..... ....+++.... ... .........+ ..+...... . ...-+...
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHHH
Confidence 58999999999999999999875432 33444443110 000 0000000000 000000000 0 01111122
Q ss_pred HHHHHHHcCCCcEEEEeCCC---CH---HHHHHHhcCCCCCCCCcEEEEEccccchhhccccceEeec
Q 035646 271 NIIGRRLRHKKVLLIIDDVV---DI---KQLECLAGKREWFGPGSRIVITSRDKHLLMMHGVDEIYNL 332 (584)
Q Consensus 271 ~~l~~~L~~k~~LlVlDdv~---~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 332 (584)
-.+...+..++-+++||+-. +. ..+..++..+. .+..||++|.+...... .+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 33556667788999999883 22 23333333332 34668888888766543 3444433
No 257
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.25 E-value=0.023 Score=56.11 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=29.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..++.|.|.+|+|||+||.+++......-..++++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999999999999998876544445677775
No 258
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.23 E-value=0.018 Score=61.49 Aligned_cols=50 Identities=18% Similarity=0.030 Sum_probs=36.4
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..|.+.|..+=....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666543333579999999999999999999987654434566765
No 259
>PRK08233 hypothetical protein; Provisional
Probab=96.21 E-value=0.02 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|.|.+|+||||||..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 37899999999999999999998653
No 260
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.19 E-value=0.0041 Score=53.89 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEecCCccHHHHHHHHHhhh
Q 035646 201 IGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~ 222 (584)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 261
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.17 E-value=0.0069 Score=54.32 Aligned_cols=35 Identities=26% Similarity=0.108 Sum_probs=29.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
.+|.|+|.+|+||||||+++.+++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 68999999999999999999998877766666664
No 262
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.16 E-value=0.047 Score=50.55 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=58.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH--hCCC------------CCCCc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL--LKLP------------NNGIW 264 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l--~~~~------------~~~~~ 264 (584)
.+++|.|..|+|||||++.++-.... ....+++... .+......+...+ .... .....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-------~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-------PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-------EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 58999999999999999999874322 2333444311 0000000000000 0000 00111
Q ss_pred ChhhhHHHHHHHHcCCCcEEEEeCCC---CHHH---HHHHhcCCCCCCCCcEEEEEccccchhh
Q 035646 265 NVYDGINIIGRRLRHKKVLLIIDDVV---DIKQ---LECLAGKREWFGPGSRIVITSRDKHLLM 322 (584)
Q Consensus 265 ~~~~~~~~l~~~L~~k~~LlVlDdv~---~~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 322 (584)
.-+...-.+.+.+-.++-++++|+.. +... +..++..+ ..+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHH
Confidence 11222334566667788999999884 2222 22333332 23567888888876654
No 263
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.15 E-value=0.03 Score=57.34 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=36.6
Q ss_pred cccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 177 LVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 177 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
++|....++++.+.+..-......|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888877776544445678999999999999999988743
No 264
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.022 Score=60.65 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=71.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
..-|.+||++|+|||-||+++++..+-+|- . + +. .+ ++....+ +.+..++.+..+-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s-V----KG---PE----LlNkYVG-------ESErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S-V----KG---PE----LLNKYVG-------ESERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e-e----cC---HH----HHHHHhh-------hHHHHHHHHHHHh
Confidence 456889999999999999999998877762 1 1 11 11 2222111 1233344444433
Q ss_pred -cCCCcEEEEeCCCCH-------------HHHHHHhcCCCCC--CCCcEEEEEccccchhh-----ccccceEeecCCCC
Q 035646 278 -RHKKVLLIIDDVVDI-------------KQLECLAGKREWF--GPGSRIVITSRDKHLLM-----MHGVDEIYNLRELH 336 (584)
Q Consensus 278 -~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~ 336 (584)
...+++|.||.++.. ..+..|+..+... ..|.-||-.|..+++.. -...+..+-|+.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 468999999999521 2245555554432 24556666665554422 12234555566556
Q ss_pred HHHHHHHhc
Q 035646 337 DDKALQLFC 345 (584)
Q Consensus 337 ~~ea~~Lf~ 345 (584)
.+|-.+++.
T Consensus 681 ~~eR~~ILK 689 (802)
T KOG0733|consen 681 AEERVAILK 689 (802)
T ss_pred HHHHHHHHH
Confidence 666555554
No 265
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.15 E-value=0.065 Score=60.83 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=38.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..++|+...++.+.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 468999999998877776443344689999999999999999998754
No 266
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.027 Score=55.64 Aligned_cols=48 Identities=17% Similarity=-0.012 Sum_probs=36.4
Q ss_pred HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 186 NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 186 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
.|..+|..+-...+++=|+|+.|+||||+|.+++-.....-...+|++
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344455533334678889999999999999998877666666889997
No 267
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.14 E-value=0.016 Score=59.29 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc------ccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS------HNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~w~~ 233 (584)
...|..+|..+=....++-|+|.+|+|||+|+.+++-... ..-..++|++
T Consensus 112 ~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 112 SQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred cHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 3455566654333457888999999999999998874321 1124668886
No 268
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.13 E-value=0.016 Score=53.62 Aligned_cols=118 Identities=14% Similarity=0.029 Sum_probs=61.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHH--HHH-hCCCC-CCCcCh-------
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLL--SQL-LKLPN-NGIWNV------- 266 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~--~~l-~~~~~-~~~~~~------- 266 (584)
...|.|+|-.|-||||.|...+-+...+--.+..+.-+.+. ...+-...+..+- ... .+... ....+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 46899999999999999999888755443334444322221 1123333333210 000 01100 000111
Q ss_pred hhhHHHHHHHHc-CCCcEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 267 YDGINIIGRRLR-HKKVLLIIDDVV--------DIKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 267 ~~~~~~l~~~L~-~k~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
.......++.+. ++-=|+|||.+. +.+++-.++.. ..++..||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence 112223344443 455699999983 23333333333 356789999999874
No 269
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.13 E-value=0.0049 Score=58.03 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.2
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999977643
No 270
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.13 E-value=0.0058 Score=65.55 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=40.7
Q ss_pred cccccchhhHHHHHHHhh----hcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMD----KECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+++|.++.++++.+.|. ......+++.++|++|+|||+||+.+++-..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 468999999999998883 2233468999999999999999999998553
No 271
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.11 E-value=0.052 Score=49.75 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=45.0
Q ss_pred EEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcC-
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRH- 279 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~- 279 (584)
+.|.|.+|+|||++|.+++.. ......++. .....+ .++...+.... ... +......+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a----t~~~~d-~em~~rI~~H~-~~R-~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA----TAEAFD-DEMAERIARHR-KRR-PAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE----ccCcCC-HHHHHHHHHHH-HhC-CCCceEeecHHHHHHHHHhc
Confidence 678999999999999999865 224566664 223332 34455544432 112 2222222333345555532
Q ss_pred -CCcEEEEeCC
Q 035646 280 -KKVLLIIDDV 289 (584)
Q Consensus 280 -k~~LlVlDdv 289 (584)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 3447999987
No 272
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.11 E-value=0.069 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987543
No 273
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.10 E-value=0.0039 Score=53.52 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=21.5
Q ss_pred EEEEecCCccHHHHHHHHHhhhcccccceE
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTSHNFEASS 230 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 230 (584)
|.|+|.+|+|||++|+.++..+...|..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq 31 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ 31 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence 679999999999999999998888776443
No 274
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.10 E-value=0.0021 Score=37.09 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=12.4
Q ss_pred CeeEEEecCCCCCCCCCCC
Q 035646 543 ELRLLERHGYPLRSLPSNF 561 (584)
Q Consensus 543 ~LryL~l~~~~l~~lP~~i 561 (584)
+|++|++++|+++.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 3666666666666666665
No 275
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.08 E-value=0.035 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.3
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 276
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.022 Score=52.69 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=23.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+.|.+.|.+|+||||+|+++++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999866554
No 277
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.07 E-value=0.051 Score=49.87 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=43.8
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCC---cChhhhHHHHHHH
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGI---WNVYDGINIIGRR 276 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~l~~~ 276 (584)
++.|.|.+|+|||++|..++.+... ...++. .....-.+....+..+.... ...- ....++...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia-----t~~~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA-----TAQPFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc-----CCCCChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHhh
Confidence 5889999999999999999876432 233432 22233345556665543222 1111 1112223333332
Q ss_pred HcCCCcEEEEeCC
Q 035646 277 LRHKKVLLIIDDV 289 (584)
Q Consensus 277 L~~k~~LlVlDdv 289 (584)
. .+.-++++|.+
T Consensus 74 ~-~~~~~VlID~L 85 (170)
T PRK05800 74 A-APGRCVLVDCL 85 (170)
T ss_pred c-CCCCEEEehhH
Confidence 2 23447899987
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.06 E-value=0.052 Score=57.46 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=25.2
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999876554
No 279
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.06 E-value=0.016 Score=57.29 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=20.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
+.|.|+|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999987655
No 280
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.04 E-value=0.013 Score=59.32 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=43.4
Q ss_pred cCcccCCCcccccccccccchhhHHHH---HHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceE
Q 035646 161 GWELKDMNESEFILEHLVGIDSHLKNL---RLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASS 230 (584)
Q Consensus 161 g~~~~~~~~~~~i~~~~vGR~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 230 (584)
|.-+....++..+...+||..+..+.. .+++..+.-..+.+.|.|++|.|||+||..+++.+....+...
T Consensus 10 GLGld~~~~~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 10 GLGLDENGEARYIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp S--B-TTS-B-SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred cCCcCCCCCEeeccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 333444344555578899988766554 4555544333589999999999999999999999887665433
No 281
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.03 E-value=0.036 Score=54.84 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=63.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCC-------CcChhhhH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNG-------IWNVYDGI 270 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~ 270 (584)
..-++|.|..|+|||||.+.++..+... ...+++... .+... +...++......-.... .++... .
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~----d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~ 183 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIV----DERSEIAGCVNGVPQHDVGIRTDVLDGCPK-A 183 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeecc----hhHHHHHHHhcccccccccccccccccchH-H
Confidence 5689999999999999999999866433 333444211 11110 11122222111100000 111111 2
Q ss_pred HHHHHHH-cCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccch
Q 035646 271 NIIGRRL-RHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHL 320 (584)
Q Consensus 271 ~~l~~~L-~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 320 (584)
..+...+ ...+-++++|.+-..+.+..+...+. .|..||+||-+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 2233333 35899999999988777777765542 57789999987655
No 282
>PLN03150 hypothetical protein; Provisional
Probab=96.01 E-value=0.0046 Score=69.10 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=51.7
Q ss_pred cccEEEecCc----cCCCCccccccCeeEEEecCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccCCC
Q 035646 522 NLRMLLIRNL----QLPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPDKIVELNMRYSRIE-QMWCG 582 (584)
Q Consensus 522 ~LrvL~L~~~----~lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~~L~~L~l~~s~i~-~lp~~ 582 (584)
.++.|+|.++ .+|..++.|+ +|++|+|++|.+. .+|..+ +|.+|++|||++|++. .+|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence 3677888887 4678899998 9999999999987 899999 9999999999999987 45653
No 283
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.063 Score=53.37 Aligned_cols=53 Identities=19% Similarity=0.050 Sum_probs=36.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHHHHh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLSQLL 256 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~ 256 (584)
..++.|.|.+|+|||+++.+++...... -..++|+. -......+...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHHHh
Confidence 4688899999999999999998876444 44566764 22344556666655543
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.00 E-value=0.028 Score=54.43 Aligned_cols=36 Identities=19% Similarity=-0.038 Sum_probs=26.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..++.|.|.+|+||||||.+++.....+-..+.++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 469999999999999999887765433334455554
No 285
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.03 Score=54.39 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=65.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEec--hhhcccCChHHHHHHHHHHHhCCC------CCCCcChhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANV--REISEEGGLTSLQNQLLSQLLKLP------NNGIWNVYDG 269 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~--~~~s~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~ 269 (584)
..+++|+|.+|+|||||++.+..-..-.. +.+++..- ...+ .....+-..+++..+.... ..+...-+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 35899999999999999999997554332 33333211 0011 1122333444444432111 1112222233
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCH------HHHHHHhcCCCCCCCCcEEEEEccccchhhc
Q 035646 270 INIIGRRLRHKKVLLIIDDVVDI------KQLECLAGKREWFGPGSRIVITSRDKHLLMM 323 (584)
Q Consensus 270 ~~~l~~~L~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 323 (584)
.-.+.+.|.-++-++|.|..-+. .+.-.++..+.. ..|...+..|-+-.+...
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhh
Confidence 34577788889999999987432 222333322221 235556666666655544
No 286
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.98 E-value=0.032 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=20.0
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999998863
No 287
>PRK14974 cell division protein FtsY; Provisional
Probab=95.98 E-value=0.098 Score=53.42 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=24.5
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999998888766543
No 288
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.022 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.190 Sum_probs=20.8
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.|.|.|.+|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999973
No 289
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.96 E-value=0.014 Score=54.56 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=51.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
..++|.|..|+|||||++.+...+... ...+.+.+..+..... ........................++..++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWVRLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEEEEEEecCCCCCCCccCHHHHHHHHhc
Confidence 689999999999999999998765432 2223232111110000 000000000001111112234556667778
Q ss_pred CCCcEEEEeCCCCHHHHHHHh
Q 035646 279 HKKVLLIIDDVVDIKQLECLA 299 (584)
Q Consensus 279 ~k~~LlVlDdv~~~~~~~~l~ 299 (584)
..+=.++++.+.+.+.+..+.
T Consensus 99 ~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 99 MRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred cCCCEEEEEccCcHHHHHHHH
Confidence 889999999999887765443
No 290
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.96 E-value=0.016 Score=57.87 Aligned_cols=70 Identities=23% Similarity=0.218 Sum_probs=52.9
Q ss_pred hcccCcccCCCcccccccccccchhhHHH---HHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccccc
Q 035646 158 NISGWELKDMNESEFILEHLVGIDSHLKN---LRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE 227 (584)
Q Consensus 158 ~~~g~~~~~~~~~~~i~~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 227 (584)
.+.|.-++....+..+...+||..+.-+. +.+++.++.-..+.|.|.|++|.|||+||..+++.....-+
T Consensus 22 HI~GLGLdeng~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 22 HIKGLGLDENGKAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred cccccccCCCCCEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 44555555555677778999998765443 46666666555789999999999999999999998876544
No 291
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.04 Score=59.95 Aligned_cols=147 Identities=15% Similarity=0.174 Sum_probs=83.8
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
....|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+++++.....|-.+..-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 3445566665555554431 123456899999999999999999999665554321111
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHH-HHHHHHcCCCcEEEEeCCCCH-------------HHHHHHhcCCCCC--CC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGIN-IIGRRLRHKKVLLIIDDVVDI-------------KQLECLAGKREWF--GP 307 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~ 307 (584)
.++.... .+.+..+. .+....+..++.|.+|.++.. .....++..+... ..
T Consensus 311 ------~l~sk~v-------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 311 ------ELLSKWV-------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred ------HHhcccc-------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 1111111 11122222 233334578999999999421 2344444443322 23
Q ss_pred CcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 308 GSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 308 gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+..||-||-.+..... ......+.+++-+.++..+.|.
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHH
Confidence 3445556655443321 1346788899999999998887
No 292
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.95 E-value=0.0074 Score=62.54 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=32.3
Q ss_pred cccEEEecCcc-CCCCccccccCeeEEEecCC-CCCCCCCCCCCCCceEEEcCCC---CccccCCCC
Q 035646 522 NLRMLLIRNLQ-LPEGLEYLSNELRLLERHGY-PLRSLPSNFQPDKIVELNMRYS---RIEQMWCGI 583 (584)
Q Consensus 522 ~LrvL~L~~~~-lp~~i~~l~~~LryL~l~~~-~l~~lP~~i~L~~L~~L~l~~s---~i~~lp~~~ 583 (584)
+|+.|.+.+|. +....+.++.+|++|.+++| .+..||++ |.+|+|.++ .+..||.++
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s-----Le~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPES-----VRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred CCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccc-----cceEEeCCCCCcccccCcchH
Confidence 46677776652 21111234557777777777 67777754 444445543 256666654
No 293
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.93 E-value=0.028 Score=52.36 Aligned_cols=33 Identities=21% Similarity=0.004 Sum_probs=26.5
Q ss_pred EEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+.|.|.+|+|||+||.+++......-..+.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999886554445667775
No 294
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.93 E-value=0.031 Score=56.88 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=34.3
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc------ccceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN------FEASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~ 233 (584)
..+..+|..+=....++-|+|.+|+|||+|+.+++...... -..++|++
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 44555565332335789999999999999999998764321 12678886
No 295
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.89 E-value=0.023 Score=57.55 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc------ccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS------HNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~w~~ 233 (584)
...|..+|..+=....++-|+|.+|+|||+|+.+++-... ..-..++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 4556666764433457899999999999999998774321 1124677886
No 296
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.89 E-value=0.0016 Score=72.17 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=53.0
Q ss_pred ccccccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 511 STSSNSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 511 ~~~~~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
...|..+..+..|+.|.++.+ ..|.++..+. +|+||.|.++.+..+|.++ ++++|+.||++++.....|.
T Consensus 58 ~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 58 SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPL 131 (1081)
T ss_pred ccCCchhhhHHHHhhcccchhhHhhCchhhhhhh-cchhheeccchhhcCchhHHhhhcccccccchhccCCCch
Confidence 334455667777888887776 4676777776 8888888888888888888 88888888888888776664
No 297
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.85 E-value=0.053 Score=49.93 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=58.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCC--------CcChhhhH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNG--------IWNVYDGI 270 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~--------~~~~~~~~ 270 (584)
.+++|.|..|.|||||.+.++.... .....+.+... .... .........+ ..+....... ...-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~-~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DISQ-WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Eccc-CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence 5899999999999999999987542 22333444311 0100 0111111000 0000000000 11111223
Q ss_pred HHHHHHHcCCCcEEEEeCCC---CHHH---HHHHhcCCCCCCCCcEEEEEccccchhh
Q 035646 271 NIIGRRLRHKKVLLIIDDVV---DIKQ---LECLAGKREWFGPGSRIVITSRDKHLLM 322 (584)
Q Consensus 271 ~~l~~~L~~k~~LlVlDdv~---~~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 322 (584)
-.+...+-.++-++++|+.. +... +..++..+. ..|..||++|.+.....
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 34556666788899999883 2222 333333222 23667888888776554
No 298
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.089 Score=54.06 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=28.1
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..++++|+|+.|+||||++..++......-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3689999999999999999999876543333455554
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.85 E-value=0.096 Score=55.49 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc--ccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS--HNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~ 233 (584)
.++++++|++|+||||++..++.... .....+..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36899999999999999999887654 2233445554
No 300
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.84 E-value=0.0028 Score=70.29 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=42.0
Q ss_pred ccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCCCC
Q 035646 523 LRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 523 LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~~ 583 (584)
|+.|||+++ .+|..|+.+. +|+-|+++.+.|.++|.++ ++.+|++|+|.++.++.+|.++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred eEEeeccccccccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH
Confidence 667777766 3566677666 7777777777777777776 7777777777777777777543
No 301
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.84 E-value=0.013 Score=56.79 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 195 CNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 195 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.....+++|.|..|+|||||++.+.......
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3457899999999999999999999876544
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.84 E-value=0.04 Score=56.01 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=29.4
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
...|..+|..+=....++.|+|.+|+|||+|+..++..
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 45566666544344689999999999999999998763
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.084 Score=54.54 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=26.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccc--cceEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNF--EASSCL 232 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~w~ 232 (584)
..+++++|+.|+||||++..++.+....+ ..+.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 46999999999999999999998754333 234444
No 304
>PRK03839 putative kinase; Provisional
Probab=95.83 E-value=0.0072 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 305
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.83 E-value=0.078 Score=51.69 Aligned_cols=52 Identities=19% Similarity=0.108 Sum_probs=36.4
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
...++.|.|.+|+|||+++.+++...... -..++|+. -......+...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E~~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LEMSKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CCCCHHHHHHHHHHH
Confidence 34799999999999999999998765444 34566664 333455666665544
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.82 E-value=0.087 Score=52.32 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=28.3
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..++++++|++|+||||++..++......-..+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999999999999999987655433444443
No 307
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.81 E-value=0.023 Score=52.39 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+++|.|++|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999987643
No 308
>PTZ00301 uridine kinase; Provisional
Probab=95.80 E-value=0.0074 Score=57.38 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..+|+|.|.+|+||||||+.+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999998876443
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.79 E-value=0.024 Score=51.72 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=59.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
.+++|.|..|.|||||.+.++-... .....+++... .... ........ ..+ .- ......-+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~-~~~~~~~~---~~i-~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVSF-ASPRDARR---AGI-AM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECCc-CCHHHHHh---cCe-EE-EEecCHHHHHHHHHHHHHh
Confidence 5899999999999999999986543 23444555321 0111 01111000 000 00 0001122233334566677
Q ss_pred CCCcEEEEeCCC---CHHHHHHHhcCCCCC-CCCcEEEEEccccchh
Q 035646 279 HKKVLLIIDDVV---DIKQLECLAGKREWF-GPGSRIVITSRDKHLL 321 (584)
Q Consensus 279 ~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IiiTTR~~~v~ 321 (584)
..+-++++|+.- +....+.+...+... ..|..||++|.+...+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 788999999883 222222222222111 2366788888876543
No 310
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.79 E-value=0.03 Score=60.92 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=44.9
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
.-++..++|++|+||||||.-++++.. |. ++=+. +|.......+-..|...+... ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~----------------s~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNH----------------SV 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhc----------------cc
Confidence 468999999999999999999998542 22 11121 344444444444444332211 11
Q ss_pred H--cCCCcEEEEeCCCC
Q 035646 277 L--RHKKVLLIIDDVVD 291 (584)
Q Consensus 277 L--~~k~~LlVlDdv~~ 291 (584)
+ .+++.-||+|.++-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 25788899999974
No 311
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.72 E-value=0.0094 Score=56.84 Aligned_cols=26 Identities=38% Similarity=0.518 Sum_probs=23.8
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 312
>PRK00625 shikimate kinase; Provisional
Probab=95.71 E-value=0.0084 Score=55.19 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.5
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.|.|+||+|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 313
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.71 E-value=0.015 Score=50.68 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=29.3
Q ss_pred hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 183 HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+.+++-+.|...-....+|.+.|.-|+|||||++.+++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44455444443222346899999999999999999998653
No 314
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.70 E-value=0.084 Score=48.53 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
++.+.|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999876554
No 315
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.70 E-value=0.0086 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+++|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 316
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.051 Score=50.08 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=59.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH--hCCCCC--C---------Cc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL--LKLPNN--G---------IW 264 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l--~~~~~~--~---------~~ 264 (584)
..+++|.|..|.|||||.+.++.... .....+++.... .... . . .+...+ ...... . ..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~~-~-~----~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKKE-P-E----EVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-cccc-h-H----hhhccEEEEecCCccccCCcHHHHhhcC
Confidence 35899999999999999999987432 223444443110 0000 0 0 000000 000000 0 11
Q ss_pred ChhhhHHHHHHHHcCCCcEEEEeCCC---CHH---HHHHHhcCCCCCCCCcEEEEEccccchhh
Q 035646 265 NVYDGINIIGRRLRHKKVLLIIDDVV---DIK---QLECLAGKREWFGPGSRIVITSRDKHLLM 322 (584)
Q Consensus 265 ~~~~~~~~l~~~L~~k~~LlVlDdv~---~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 322 (584)
.-+...-.+...+..++-++++|+.- +.. .+..++..+. ..|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 11122334666777889999999983 222 2333333322 23567888888876544
No 317
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.69 E-value=0.03 Score=60.65 Aligned_cols=51 Identities=20% Similarity=0.084 Sum_probs=39.0
Q ss_pred hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 183 HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
-+..|.++|..+=....++.|.|.+|+|||||+.+++.....+-+.++++.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356677777654444679999999999999999999987655555666664
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.68 E-value=0.037 Score=51.10 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=55.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEec--hhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANV--REISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~--~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
.+++|.|..|+|||||.+.++.-... ....+.+... ....+... ...-+...-.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~lara 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHHH
Confidence 58999999999999999998864322 2333333210 00111110 11112233345666
Q ss_pred HcCCCcEEEEeCCC---CHHH---HHHHhcCCCCCCCCcEEEEEccccchhh
Q 035646 277 LRHKKVLLIIDDVV---DIKQ---LECLAGKREWFGPGSRIVITSRDKHLLM 322 (584)
Q Consensus 277 L~~k~~LlVlDdv~---~~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 322 (584)
+..++-++++|.-- +... +..++..+.. ..+.-||++|.+.....
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLD 136 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHH
Confidence 77788999999883 2322 2222222211 12255777777765443
No 319
>PRK04132 replication factor C small subunit; Provisional
Probab=95.67 E-value=0.4 Score=54.80 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=69.5
Q ss_pred cCCccHHHHHHHHHhhh-cccccc-eEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcE
Q 035646 206 MGGIGKTTLAGVVYDLT-SHNFEA-SSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVL 283 (584)
Q Consensus 206 ~gGiGKTtLA~~~~~~~-~~~f~~-~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~L 283 (584)
+.++||||+|..+++.+ ...+.. .+-++ ++...+... .++++......... -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~-IR~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINV-IREKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHH-HHHHHHHHHhcCCc---------------CCCCCEE
Confidence 67999999999999975 222322 22332 233333433 23333322111110 0124579
Q ss_pred EEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc-hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 284 LIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH-LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 284 lVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+|+|+++. .+....|...+......+++|++|.+.. +... ......+.+.+++.++..+.+.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 99999974 4466666666655556777777665542 3222 2235688999999988887665
No 320
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.67 E-value=0.049 Score=57.55 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=37.6
Q ss_pred hhhHHHHHHHhh-----hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 181 DSHLKNLRLLMD-----KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 181 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
.+-+.++..||. .+.-+.+++.|+|++|+||||..+.++.... +...-|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg--~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG--YQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC--ceeeeec
Confidence 345777888887 4445578999999999999999999987553 3344555
No 321
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.66 E-value=0.0097 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.312 Sum_probs=20.7
Q ss_pred EEEEecCCccHHHHHHHHHhhh
Q 035646 201 IGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~ 222 (584)
|.|+|.+|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999977
No 322
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.65 E-value=0.17 Score=61.32 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=23.1
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+-|.++|++|.|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999854
No 323
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.63 E-value=0.028 Score=55.61 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=37.4
Q ss_pred HHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 187 LRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 187 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+...|..+=...+++.|+|.+|+|||++|.+++.+.......++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33344433344689999999999999999999998878888888886
No 324
>PTZ00494 tuzin-like protein; Provisional
Probab=95.62 E-value=3.5 Score=43.25 Aligned_cols=187 Identities=11% Similarity=-0.002 Sum_probs=101.6
Q ss_pred ccccccchhhHHHHHHHhhhc-CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
...+|.|+.|-..+.+.|.+. ...++++.+.|.-|.||++|.+....+- --..++++ + . +.++.+..+.
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-V---R---g~EDtLrsVV 439 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-V---G---GTEDTLRSVV 439 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-e---c---CCcchHHHHH
Confidence 578999999999999988754 3458999999999999999998876543 23456665 2 2 2234455555
Q ss_pred HHHhCCCCCCCcChhhh----HHHHHHHHcCCCcEEEEeCCC--CHHH-HHHHhcCCCCCCCCcEEEEEccccchh---h
Q 035646 253 SQLLKLPNNGIWNVYDG----INIIGRRLRHKKVLLIIDDVV--DIKQ-LECLAGKREWFGPGSRIVITSRDKHLL---M 322 (584)
Q Consensus 253 ~~l~~~~~~~~~~~~~~----~~~l~~~L~~k~~LlVlDdv~--~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~---~ 322 (584)
..+.-..-....+.-+- ...-+....++.-+||+-==+ +..- ..+.. .+.....-|+|++---.+.+- .
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhc
Confidence 55432211112222111 112222334566677764222 2211 11111 111113456776643222111 1
Q ss_pred ccccceEeecCCCCHHHHHHHhc--CCchhHHHhhhhhhC--CCHHHHHHHHH
Q 035646 323 MHGVDEIYNLRELHDDKALQLFC--GLPLALKVLGSFLYG--KTTKEWESALK 371 (584)
Q Consensus 323 ~~~~~~~~~l~~L~~~ea~~Lf~--G~PLal~~~~~~L~~--~~~~~w~~~l~ 371 (584)
..+.-+.|.+++++.++|.+... =-||.+..+-..+-. .+.++.-..+.
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~lDal~l~~FvevvGTnSnDlDEL~AAv~ 571 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTLDALDLVCFVEVVGTRSSDVDELCAALR 571 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhcccchhhhhhhhhhhcCCcccHHHHHHHHH
Confidence 12234678999999999999887 234444433333322 33444444443
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=95.62 E-value=0.056 Score=52.24 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=28.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..++.|.|.+|+|||++|.+++.....+-..++++.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999999886544444556654
No 326
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.61 E-value=0.0067 Score=51.05 Aligned_cols=25 Identities=36% Similarity=0.248 Sum_probs=21.3
Q ss_pred EEEEecCCccHHHHHHHHHhhhccc
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
|-|+|.+|+|||+||..++..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999876544
No 327
>PRK10867 signal recognition particle protein; Provisional
Probab=95.61 E-value=0.074 Score=56.18 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=24.5
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...+|.++|.+|+||||.|..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999998888766554
No 328
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.089 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=22.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+++|.|..|+|||||++.++-...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 36999999999999999999887543
No 329
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.58 E-value=0.0026 Score=67.00 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=60.1
Q ss_pred cccccccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 510 FSTSSNSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 510 ~~~~~~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
+..++.-+..+..||.|.+..+ ++|+.+++|+ |+-|+++++++..||-+| +|++||+|-|.++.++.=|-
T Consensus 178 i~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp--Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 178 IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP--LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc--eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 4445567788899999988776 5899999887 999999999999999999 99999999999998876553
No 330
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.58 E-value=0.3 Score=52.74 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=38.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..++|....+..+.+.+..-......|.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 458999988888887776444445678999999999999999988753
No 331
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.58 E-value=0.024 Score=55.66 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.|.++|++|+||||+|+.++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987643
No 332
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.57 E-value=0.01 Score=54.50 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=23.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...|.|+|++|+||||+|+.++.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 333
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.074 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..+++|.|..|+|||||++.++-.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999853
No 334
>PRK04040 adenylate kinase; Provisional
Probab=95.55 E-value=0.013 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998774
No 335
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.55 E-value=0.041 Score=50.42 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=34.0
Q ss_pred cccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh
Q 035646 177 LVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 177 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
+||....+.++.+.+..-......|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877754333467789999999999999999984
No 336
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.12 Score=58.59 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=67.5
Q ss_pred ccccccchhhHHHHHHHhhhcC------CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC------NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSL 247 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~ 247 (584)
.+.++|.++.+..|.+.+.... .......+.|+.|+|||.||++++..+-...+..+-++ +.+.
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~ 630 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEF 630 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhh
Confidence 5677888888888877775321 13567889999999999999999998766666555554 2222
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCc-EEEEeCCCC
Q 035646 248 QNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKV-LLIIDDVVD 291 (584)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~ 291 (584)
.+ ...+.+.+..-. -.+....+.+.++.++| ++.||||+.
T Consensus 631 ~e--vskligsp~gyv--G~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYV--GKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hh--hhhccCCCcccc--cchhHHHHHHHHhcCCceEEEEechhh
Confidence 22 333322222111 11234467888888776 777899974
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.54 E-value=0.032 Score=53.92 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=29.5
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..++.+.+.....+..+|+|+|.||+|||||..++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444444344457899999999999999999998876554
No 338
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.54 E-value=0.093 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 339
>PHA02774 E1; Provisional
Probab=95.52 E-value=0.046 Score=58.85 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=31.4
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 182 SHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.-+..|..+|. +......+.|+|++|.|||.+|..+.+-+.
T Consensus 419 ~fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566666664 333456899999999999999999998764
No 340
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.51 E-value=0.01 Score=54.59 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=28.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc-ccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS-HNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~ 233 (584)
...+.+.|+.|+|||.||+.++..+. ......+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 35788999999999999999999876 4544445444
No 341
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.51 E-value=0.052 Score=59.33 Aligned_cols=47 Identities=17% Similarity=0.088 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..++|....++++.+.+..-......|.|+|..|+||+.+|+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 57899999888887777533323356889999999999999997654
No 342
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.49 E-value=0.035 Score=55.22 Aligned_cols=118 Identities=19% Similarity=0.173 Sum_probs=67.3
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC
Q 035646 182 SHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN 261 (584)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~ 261 (584)
...+.+.++|...-...+.|.|.|..|+||||++..+...+...-...+-+.+..+. .+ .....
T Consensus 111 ~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~----~l------------~~~~~ 174 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL----RL------------PGPNQ 174 (270)
T ss_dssp HCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S------------------SCSSE
T ss_pred hhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce----ee------------cccce
Confidence 344556666653322347999999999999999999998665541222333311111 00 00000
Q ss_pred ---CC-cChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEE-EEEccccc
Q 035646 262 ---GI-WNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRI-VITSRDKH 319 (584)
Q Consensus 262 ---~~-~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-iiTTR~~~ 319 (584)
.. .+.......+...|+..+=.++++.+.+.+....+... ..|..+ +-|.....
T Consensus 175 ~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~s 233 (270)
T PF00437_consen 175 IQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHANS 233 (270)
T ss_dssp EEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-SS
T ss_pred EEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecCC
Confidence 00 23345566778888989999999999988877764433 457777 55555443
No 343
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.48 E-value=0.11 Score=48.53 Aligned_cols=25 Identities=32% Similarity=0.135 Sum_probs=22.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++.|.|.+|+|||+++.+++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4888999999999999999988654
No 344
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.46 E-value=0.0085 Score=32.06 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=6.4
Q ss_pred CceEEEcCCCCccccC
Q 035646 565 KIVELNMRYSRIEQMW 580 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp 580 (584)
+|++|+|++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 345
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.46 E-value=0.056 Score=51.94 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 346
>PRK06547 hypothetical protein; Provisional
Probab=95.45 E-value=0.015 Score=53.55 Aligned_cols=27 Identities=37% Similarity=0.300 Sum_probs=23.8
Q ss_pred CceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
....+|+|.|.+|+||||+|..++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999999999999864
No 347
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.44 E-value=0.039 Score=57.33 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=38.8
Q ss_pred ccccccchhhHHHHHHHhhhc------------CCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE------------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
+.+++|.++..+.+.-.+... ....+-|.++|++|+|||++|+.++......|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 466888888887775544321 11246789999999999999999999765543
No 348
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.42 E-value=0.014 Score=55.58 Aligned_cols=27 Identities=37% Similarity=0.431 Sum_probs=23.7
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...+|+|.|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357999999999999999999997654
No 349
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.41 E-value=0.062 Score=58.68 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=36.2
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 233 (584)
+..|.+.|..+=....++.|.|.+|+|||+||.+++.....+ -..++|+.
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 445555665343345899999999999999999998765444 45667775
No 350
>PRK13947 shikimate kinase; Provisional
Probab=95.39 E-value=0.012 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=22.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.|.|+|++|+||||+|+.++++..-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999877443
No 351
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.099 Score=57.43 Aligned_cols=92 Identities=20% Similarity=0.159 Sum_probs=53.6
Q ss_pred cccchhhHHHHHHHhhh----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 177 LVGIDSHLKNLRLLMDK----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 177 ~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
+=|.++-..+|.+-+.. +-....-|.+||++|.|||-||++|+....-.| +. + +.+ +
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V----KGP---E 740 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V----KGP---E 740 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e----cCH---H
Confidence 34666666666654432 112245688999999999999999997654433 21 1 111 1
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD 291 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 291 (584)
++.... +. +.+...+.+.+.-..++++|.||.+++
T Consensus 741 LLNMYV----Gq------SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMYV----GQ------SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHh----cc------hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222211 11 122333334444456899999999964
No 352
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.33 E-value=0.042 Score=56.75 Aligned_cols=101 Identities=23% Similarity=0.176 Sum_probs=57.8
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
..+-+-|||..|.|||.|.-.+|+.....-..++ .......++-+.+.... .....+..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~------------HFh~Fm~~vh~~l~~~~-----~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV------------HFHEFMLDVHSRLHQLR-----GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccc------------cccHHHHHHHHHHHHHh-----CCCccHHHHHHH
Confidence 3678999999999999999999986533211111 11222333333322211 112334556677
Q ss_pred HcCCCcEEEEeCCC--CHH---HHHHHhcCCCCCCCCcEEEEEcc
Q 035646 277 LRHKKVLLIIDDVV--DIK---QLECLAGKREWFGPGSRIVITSR 316 (584)
Q Consensus 277 L~~k~~LlVlDdv~--~~~---~~~~l~~~~~~~~~gs~IiiTTR 316 (584)
+.++..||.||.+. +.. -+..++..+- ..|..++.||.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 77888899999873 332 3455554442 45665555553
No 353
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.33 E-value=0.13 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..+++|.|..|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 354
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.097 Score=50.22 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 176 HLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.+=|=.++++.|.+.... +-+..+-|.++|++|.|||-+|++++++...
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 344566677777665542 2244678899999999999999999997644
No 355
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.32 E-value=0.099 Score=52.67 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=27.3
Q ss_pred cchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHH
Q 035646 179 GIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVY 219 (584)
Q Consensus 179 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~ 219 (584)
+|..+-.--.++|. .+++..|.+.|.+|.|||-||.+..
T Consensus 228 prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHH
Confidence 34444333344444 3458899999999999999997755
No 356
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.30 E-value=0.058 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..+++|.|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999998875
No 357
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.29 E-value=0.041 Score=55.86 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=59.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
...++|.|..|+|||||++.+...+.... ..+.+.+..+..... ..... +...........-.....+...|
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~~-l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYVH-LFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEEE-EEecCCCCCcCccCHHHHHHHHh
Confidence 36899999999999999999987654322 233333222211100 00000 00000001111223455667778
Q ss_pred cCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcE-EEEEccccc
Q 035646 278 RHKKVLLIIDDVVDIKQLECLAGKREWFGPGSR-IVITSRDKH 319 (584)
Q Consensus 278 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IiiTTR~~~ 319 (584)
+..+-.+++|.+...+.+..+... . .|.. ++.|+....
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 889999999999987766543333 2 2332 466665543
No 358
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.28 E-value=0.015 Score=53.70 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988653
No 359
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.26 E-value=0.0096 Score=34.26 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=17.4
Q ss_pred CceEEEcCCCCccccCCCC
Q 035646 565 KIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~~~ 583 (584)
+|++|||++|+++++|.++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 6999999999999999875
No 360
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.26 E-value=0.0047 Score=65.10 Aligned_cols=64 Identities=23% Similarity=0.354 Sum_probs=29.1
Q ss_pred ccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
...+++..|.+|+|+.+ .+|..+|.|+ |+.|-+++++++++|+.| -+.+|..||.+.|.|..||
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp--Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp 182 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDGLCDLP--LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP 182 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChhhhcCc--ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhch
Confidence 33344444444444443 2344444444 444444444444444444 4444444444444444444
No 361
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.013 Score=63.91 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+|+++|++|.||||+|.-+.+
T Consensus 495 e~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987765
No 362
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.25 E-value=0.015 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=22.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999764
No 363
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.24 E-value=0.019 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+|+|.|.+|+||||||..+.......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 364
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.057 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|..|.|||||++.++...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 365
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.24 E-value=0.13 Score=59.42 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=59.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc----cceEEEEechhhcccCChH--HHHHHHHHHHhCCCCCCCcChhhhHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF----EASSCLANVREISEEGGLT--SLQNQLLSQLLKLPNNGIWNVYDGINI 272 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~w~~~~~~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~ 272 (584)
.-+.|+|.+|.||||+...++-...... +..+++..-.......... .+..-+... ...... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~-~~~~~~----~~~~~~~ 297 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEE-LFSQGI----AKQLIEA 297 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHH-HhccCC----cchhhHH
Confidence 4788999999999999999886433221 2223332110001111111 222222222 111111 1112222
Q ss_pred HHHHHcCCCcEEEEeCCCCHHH---------HHHHhcCCCCCCCCcEEEEEccccc
Q 035646 273 IGRRLRHKKVLLIIDDVVDIKQ---------LECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 273 l~~~L~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
..+.++..++|+.+|.++.... +..+.+. -+.+++|+|+|...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~ 349 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDT 349 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccch
Confidence 2577889999999999975422 3333333 35889999998763
No 366
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.3 Score=46.55 Aligned_cols=140 Identities=16% Similarity=0.272 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHH
Q 035646 179 GIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSL 247 (584)
Q Consensus 179 GR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~ 247 (584)
|.++.+++|.+.+..+ -..++-+.++|++|.|||-||+++++.. .+.|+. +|. ..+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir----vsg----sel 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR----VSG----SEL 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE----ech----HHH
Confidence 4677777777766522 1235678999999999999999999733 333443 222 122
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHH----HcCCCcEEEEeCCCCHH-------------H---HHHHhcCCCCC--
Q 035646 248 QNQLLSQLLKLPNNGIWNVYDGINIIGRR----LRHKKVLLIIDDVVDIK-------------Q---LECLAGKREWF-- 305 (584)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~-------------~---~~~l~~~~~~~-- 305 (584)
.+.. .+ +....+++. -.+.+-++..|.+++.. . .-.++..+..+
T Consensus 218 vqk~----ig----------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 218 VQKY----IG----------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHH----hh----------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 2222 11 112222222 14568889999885421 1 11233333322
Q ss_pred CCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.++.+||..|..-+++. ....+..++.++-+++.-.+++.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 45678888776544432 22344567778877777777776
No 367
>PTZ00035 Rad51 protein; Provisional
Probab=95.23 E-value=0.089 Score=53.93 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=29.8
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...|..+|..+=....++.|+|.+|+|||+|+..++-..
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 456666776443446899999999999999999887543
No 368
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.23 E-value=0.11 Score=49.54 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHcCCCcEEEEeCC----C--CHHHHHHHhcCCCCCCCCcEEEEEccccchhhccc
Q 035646 267 YDGINIIGRRLRHKKVLLIIDDV----V--DIKQLECLAGKREWFGPGSRIVITSRDKHLLMMHG 325 (584)
Q Consensus 267 ~~~~~~l~~~L~~k~~LlVlDdv----~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 325 (584)
+.....+.+.|-..|-+|+.|.- + +...+-.++..+. ...|.-||+.|-++.++..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC
Confidence 34445678888899999999975 2 2233333333321 134778999999998888643
No 369
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.22 E-value=0.007 Score=67.78 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=57.3
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCC---CCCCCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPS---NFQPDK 565 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~---~i~L~~ 565 (584)
.+.++++.+....- .-......+.+|++|+.||++++.+.+ +|+.|+ +|+.|.+++-.+++-+. -|+|++
T Consensus 147 LPsL~sL~i~~~~~----~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lk-nLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQF----DNDDFSQLCASFPNLRSLDISGTNISNLSGISRLK-NLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred CcccceEEecCcee----cchhHHHHhhccCccceeecCCCCccCcHHHhccc-cHHHHhccCCCCCchhhHHHHhcccC
Confidence 46677766655421 111122456789999999999997664 888888 89999998877776553 238999
Q ss_pred ceEEEcCCCCc
Q 035646 566 IVELNMRYSRI 576 (584)
Q Consensus 566 L~~L~l~~s~i 576 (584)
|.+||+|...-
T Consensus 222 L~vLDIS~~~~ 232 (699)
T KOG3665|consen 222 LRVLDISRDKN 232 (699)
T ss_pred CCeeecccccc
Confidence 99999987643
No 370
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.088 Score=51.23 Aligned_cols=51 Identities=24% Similarity=0.278 Sum_probs=38.8
Q ss_pred ccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 176 HLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
++=|-+..+++|.+....+ -..++-|.++|.+|.|||-||++++++....|
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3457788888887766422 12356788999999999999999999776655
No 371
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.17 E-value=0.14 Score=50.17 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|..|+|||||++.++...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998743
No 372
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.16 E-value=0.17 Score=45.64 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=29.9
Q ss_pred ccchhhHHHHHHHhhhcC-CceEEEEEEecCCccHHHHHHHHHh
Q 035646 178 VGIDSHLKNLRLLMDKEC-NVVCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 178 vGR~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.|.+..++.+.+.+.... .....|+++|++|+|||||...+..
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 455555666666553221 1235678999999999999999875
No 373
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.16 E-value=0.028 Score=58.44 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=39.5
Q ss_pred ccccccchhhHHHHHHHhhhc--------C----CceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE--------C----NVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+..++|.+..++.+..++... . ...+.+.++|++|+|||+||+.++......
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 467899998888887666421 0 013678999999999999999999876544
No 374
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.15 E-value=0.057 Score=55.29 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc------cccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH------NFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 233 (584)
...|..+|..+=....++-|+|.+|+|||+||..++-.... .-..++|++
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 45566666544344678999999999999999988753221 112578886
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.14 E-value=0.053 Score=57.25 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=33.2
Q ss_pred HHHHHHcCCCcEEEEeCCC---CHHHHHHHhcCCCCCCCCcEEEEEccccchhhcc
Q 035646 272 IIGRRLRHKKVLLIIDDVV---DIKQLECLAGKREWFGPGSRIVITSRDKHLLMMH 324 (584)
Q Consensus 272 ~l~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~ 324 (584)
.|.+.|-.+|-||.||+-- +.+....+-..+.....+ .++|++|.++.+...
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGV 285 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhH
Confidence 4555566789999999984 344444444443323333 689999998766543
No 376
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.12 E-value=0.024 Score=58.13 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=39.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccccc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE 227 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 227 (584)
..++|+++.+..+...+..+ +.+.+.|.+|+|||+||+.++......|-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 45899888888887766644 47889999999999999999998875553
No 377
>PRK05439 pantothenate kinase; Provisional
Probab=95.12 E-value=0.12 Score=52.12 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=24.7
Q ss_pred CceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
....+|+|.|.+|+||||+|+.+......
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34789999999999999999998876543
No 378
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.12 E-value=0.015 Score=54.14 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=20.9
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 379
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.11 Score=54.36 Aligned_cols=25 Identities=20% Similarity=-0.001 Sum_probs=22.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 380
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.2 Score=54.53 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=37.4
Q ss_pred ccccccchhhHHHHHHHhh---hcC-------CceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 174 LEHLVGIDSHLKNLRLLMD---KEC-------NVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..+..|.++..+++.+.+. ++. .-++-|.++|++|.|||.||++++-...-.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 3566788877666655543 222 126789999999999999999999765433
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.06 E-value=0.17 Score=51.41 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.2
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876544
No 382
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.04 E-value=0.18 Score=48.46 Aligned_cols=155 Identities=14% Similarity=0.201 Sum_probs=88.2
Q ss_pred ccccccchhhHHH---HHHHhhhc----CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 174 LEHLVGIDSHLKN---LRLLMDKE----CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 174 ~~~~vGR~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
-++.||.+..... |...|..+ .-.++-|..+|++|.|||.+|+++++..+..|- -+. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk----a-------- 184 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK----A-------- 184 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec----h--------
Confidence 4667888765543 34555432 233789999999999999999999987654331 111 0
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCH--------------HHHHHHhcCCCC--CCCCc
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDI--------------KQLECLAGKREW--FGPGS 309 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~--~~~gs 309 (584)
.+++....+ +....+..+-+.. +..++++.+|.++.. +....|+..+.. .+.|.
T Consensus 185 --t~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 185 --TELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred --HHHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 011111111 1111222222222 457999999988532 234455544432 23455
Q ss_pred EEEEEccccchhhc---cccceEeecCCCCHHHHHHHhc----CCchhHH
Q 035646 310 RIVITSRDKHLLMM---HGVDEIYNLRELHDDKALQLFC----GLPLALK 352 (584)
Q Consensus 310 ~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~----G~PLal~ 352 (584)
..|..|.+...+.. ......++..--+++|-.+++. -+||-+.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~ 305 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD 305 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc
Confidence 55666666655432 2344566777778888888887 5555443
No 383
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.04 E-value=0.17 Score=46.51 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHcCCCcEEEEeCC----CCHHHHH--HHhcCCCCCCCCcEEEEEccccchhhccc
Q 035646 267 YDGINIIGRRLRHKKVLLIIDDV----VDIKQLE--CLAGKREWFGPGSRIVITSRDKHLLMMHG 325 (584)
Q Consensus 267 ~~~~~~l~~~L~~k~~LlVlDdv----~~~~~~~--~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 325 (584)
++....+.+.+-++|-+|+-|.- +..-.|+ .++..++ ..|.-||++|-+..+...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 34445577778899999999954 4333333 3333332 56899999999987766553
No 384
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.019 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+|.|.|++|+||||+|+.+++.+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68899999999999999999876443
No 385
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.04 E-value=0.13 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEecCCccHHHHHHHHHhhh
Q 035646 201 IGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~ 222 (584)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 386
>PRK15453 phosphoribulokinase; Provisional
Probab=95.03 E-value=0.11 Score=51.13 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.2
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
...+|+|.|.+|+||||+|+.+++.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999976643
No 387
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.02 E-value=0.048 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.9
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999865
No 388
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.02 E-value=0.21 Score=47.72 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|..|.|||||.+.++-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 389
>PRK06217 hypothetical protein; Validated
Probab=95.02 E-value=0.018 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.|.|.|.+|+||||||++++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 390
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.01 E-value=0.018 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|.|.|.+|+||||+|+.++.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 391
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.12 Score=50.59 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=58.2
Q ss_pred cccccchhhHHHHHHHhh----------hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 175 EHLVGIDSHLKNLRLLMD----------KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
+.+.|.+...+.|.+... .....-+-|.++|++|.||+.||++|+......| +. +|..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF-----FS----vSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF-----FS----VSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce-----EE----eehH---
Confidence 456788888888876542 1223367899999999999999999998654332 22 2221
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCC
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVV 290 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~ 290 (584)
.+.+..++. .+.++..+.+.. ++++-+|.+|.++
T Consensus 201 -----DLvSKWmGE-------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 -----DLVSKWMGE-------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred -----HHHHHHhcc-------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 233333332 233444444443 4689999999995
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.1 Score=55.92 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=23.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+++|+|.+|+||||++..++.....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999998876543
No 393
>PRK15115 response regulator GlrR; Provisional
Probab=94.99 E-value=2.1 Score=45.85 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=34.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..++|....+..+.+....-......|.|.|.+|+|||++|+.+.+..
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357787777766655444322233567899999999999999988753
No 394
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.99 E-value=0.14 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 395
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.97 E-value=0.1 Score=58.68 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=37.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+.+.-
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 567899888888877776433334468899999999999999998753
No 396
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.97 E-value=0.032 Score=52.67 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=27.8
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
...+|+|+|++|+||||||+.+.......-...+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 457999999999999999999998764432334454
No 397
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.96 E-value=0.34 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..+++|.|..|.|||||++.++..
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999999874
No 398
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.96 E-value=0.033 Score=57.48 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=55.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccccc---ceEEEEechhhcccCChHHHHH--HHHHHHhCCCCCCCcChhhhHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFE---ASSCLANVREISEEGGLTSLQN--QLLSQLLKLPNNGIWNVYDGINI 272 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~w~~~~~~~s~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~ 272 (584)
...|.|+|+.|+||||++..+...+....+ .++.+.+..+ ........ ....+ .. ...+.......
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~~~~~~v~Q----~~-v~~~~~~~~~~ 204 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIETISASVCQ----SE-IPRHLNNFAAG 204 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eeccccccccceeee----ee-ccccccCHHHH
Confidence 369999999999999999999887643332 1222221111 11100000 00001 00 01112234566
Q ss_pred HHHHHcCCCcEEEEeCCCCHHHHHHHhcC
Q 035646 273 IGRRLRHKKVLLIIDDVVDIKQLECLAGK 301 (584)
Q Consensus 273 l~~~L~~k~~LlVlDdv~~~~~~~~l~~~ 301 (584)
++..|+..+-.+++..+.+.+.....+..
T Consensus 205 l~~aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 205 VRNALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HHHHhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 77888999999999999988887655433
No 399
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.93 E-value=0.2 Score=52.66 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=24.6
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...+|.++|.+|+||||+|..++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998765544
No 400
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.91 E-value=0.091 Score=47.12 Aligned_cols=88 Identities=22% Similarity=0.153 Sum_probs=45.9
Q ss_pred EEecCCccHHHHHHHHHhhhcccccceEEEEe---chhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcC
Q 035646 203 ICVMGGIGKTTLAGVVYDLTSHNFEASSCLAN---VREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRH 279 (584)
Q Consensus 203 I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~---~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~ 279 (584)
|.|++|+||||+|+.++.++. | ..+.. ++...... ......+...+... ..-+.+.....+...+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~--s~~g~~i~~~l~~g---~~vp~~~v~~ll~~~l~~ 70 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSD--SELGKQIQEYLDNG---ELVPDELVIELLKERLEQ 70 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTT--SHHHHHHHHHHHTT---SS--HHHHHHHHHHHHHS
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhh--hHHHHHHHHHHHhh---ccchHHHHHHHHHHHHhh
Confidence 689999999999999998652 2 22220 00000111 11122222222211 122233445556666643
Q ss_pred --CCcEEEEeCC-CCHHHHHHHhc
Q 035646 280 --KKVLLIIDDV-VDIKQLECLAG 300 (584)
Q Consensus 280 --k~~LlVlDdv-~~~~~~~~l~~ 300 (584)
...-+|||+. .+.++.+.+..
T Consensus 71 ~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 71 PPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hcccceeeeeeccccHHHHHHHHH
Confidence 3567899999 46666665544
No 401
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.91 E-value=0.13 Score=47.80 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|..|.|||||.+.++...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998743
No 402
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.90 E-value=0.018 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 403
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.90 E-value=0.11 Score=56.07 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=64.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCC
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGI 263 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~ 263 (584)
++.+..++... ..++.|+|+.|+||||+...+.+.+...-..++-+.+-.+.. -.+. .+. ....
T Consensus 231 ~~~l~~~~~~~---~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~-~~~~--------~q~----~v~~ 294 (486)
T TIGR02533 231 LSRFERLIRRP---HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ-IEGI--------GQI----QVNP 294 (486)
T ss_pred HHHHHHHHhcC---CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee-cCCC--------ceE----EEcc
Confidence 34445444322 358999999999999999988876543322223332111000 0010 000 0000
Q ss_pred cChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEcccc
Q 035646 264 WNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDK 318 (584)
Q Consensus 264 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 318 (584)
.........++..|+..+=.+++..+.+.+......... ..|..|+-|-...
T Consensus 295 ~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa---~tGHlvlsTlHa~ 346 (486)
T TIGR02533 295 KIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS---LTGHLVLSTLHTN 346 (486)
T ss_pred ccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHH---HhCCcEEEEECCC
Confidence 001234567888899999999999999988766554332 2344444444443
No 404
>PRK13949 shikimate kinase; Provisional
Probab=94.89 E-value=0.022 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.|.|+|++|+||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 405
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.88 E-value=0.24 Score=47.05 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|..|+|||||++.++..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999863
No 406
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.88 E-value=0.022 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEEecCCccHHHHHHHHHhhhc
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998763
No 407
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.87 E-value=0.046 Score=60.56 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=53.1
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc-cccceEEEEechhhcccCChHHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH-NFEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
-+.++|.+..++.|...+..+ +.+.++|.+|+||||+|+.+++.+.. .++...|..+ .......+++.+.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~~v~ 100 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIRTVP 100 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHHHHH
Confidence 367899999999888877644 36889999999999999999987643 3577788763 3344555555555
Q ss_pred HH
Q 035646 253 SQ 254 (584)
Q Consensus 253 ~~ 254 (584)
..
T Consensus 101 ~~ 102 (637)
T PRK13765 101 AG 102 (637)
T ss_pred Hh
Confidence 43
No 408
>PRK08356 hypothetical protein; Provisional
Probab=94.87 E-value=0.086 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.3
Q ss_pred EEEEEEecCCccHHHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVY 219 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~ 219 (584)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 409
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.33 Score=54.08 Aligned_cols=148 Identities=11% Similarity=0.157 Sum_probs=82.0
Q ss_pred ccccccchhhHHHHHH---Hhhhc-------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 174 LEHLVGIDSHLKNLRL---LMDKE-------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~---~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
-.++.|-++..++|.+ .|..+ ..-++=|.|+|++|.|||-||++++-...-. |+. ++.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~s----vSG--- 377 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFS----VSG--- 377 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eee----ech---
Confidence 5678888876665554 44422 1226789999999999999999999754322 232 111
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCCCH-----------------HHHHHHhcCCCCC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVVDI-----------------KQLECLAGKREWF 305 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~~ 305 (584)
.++. ..+.+.. ...++.+.. .-.+.++.+.+|+++.. ..+.+++.....+
T Consensus 378 -SEFv----E~~~g~~-------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 378 -SEFV----EMFVGVG-------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred -HHHH----HHhcccc-------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 1111 1111100 111222222 22457889999987422 2356666555554
Q ss_pred CCCcEE--EEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRI--VITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~I--iiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..| +-+|+..+++.. -..+..+.++.-+...-.++|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence 444433 446665554322 2244566777777777777776
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.87 E-value=0.21 Score=52.81 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=23.6
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+.++.++|.+|+||||.|..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988754
No 411
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.87 E-value=0.018 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 412
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.86 E-value=0.1 Score=52.67 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=52.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc--cceEEEEechhhcc-cCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF--EASSCLANVREISE-EGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR 275 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~w~~~~~~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 275 (584)
+.+.|+|..|+||||++..+...+.... ...+-+.+..+..- ..+.. ++. . . .........++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~-~-~---~~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLR-T-S---DDAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEE-e-c---CCCCCHHHHHHH
Confidence 4678999999999999999998765432 22333332211110 00000 000 0 0 011145667788
Q ss_pred HHcCCCcEEEEeCCCCHHHHHHH
Q 035646 276 RLRHKKVLLIIDDVVDIKQLECL 298 (584)
Q Consensus 276 ~L~~k~~LlVlDdv~~~~~~~~l 298 (584)
.|+..+=.+|+..+.+.+.+..+
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHH
Confidence 88999999999999988876644
No 413
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.023 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=23.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|-||=|+||||||+.++++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999775
No 414
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.17 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|..|+|||||.+.++-.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999863
No 415
>PHA02244 ATPase-like protein
Probab=94.82 E-value=0.029 Score=57.30 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=32.8
Q ss_pred ccccccchhhHHH----HHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 174 LEHLVGIDSHLKN----LRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 174 ~~~~vGR~~~~~~----l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
+..++|....+.. +..++..+ ..|.|+|++|+|||+||+++++....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567776655543 33344322 35788999999999999999987543
No 416
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.81 E-value=0.053 Score=52.17 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=24.3
Q ss_pred hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 183 HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+.+...+... .+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 345555555422 278899999999998887777765
No 417
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.79 E-value=0.16 Score=48.40 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..+++|.|..|+|||||++.++-.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999864
No 418
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.77 E-value=0.017 Score=57.38 Aligned_cols=24 Identities=21% Similarity=0.121 Sum_probs=21.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+-+.++|+.|+|||++++.+....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 678999999999999999988754
No 419
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.76 E-value=0.042 Score=58.34 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=56.3
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCcc---CCC-CccccccCeeEEEecCCCCCCCCCC-C-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ---LPE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~---lp~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~ 564 (584)
..+++.+.+.... -..+.. +.++-+..||+|||+.+. +|. ++-.-. +|++|+|.+++|..+-.. | .|.
T Consensus 124 sghl~~L~L~~N~---I~sv~s--e~L~~l~alrslDLSrN~is~i~~~sfp~~~-ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 124 SGHLEKLDLRHNL---ISSVTS--EELSALPALRSLDLSRNLISEIPKPSFPAKV-NIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred ccceeEEeeeccc---cccccH--HHHHhHhhhhhhhhhhchhhcccCCCCCCCC-CceEEeeccccccccccccccccc
Confidence 4456666655431 112333 667778888888888763 333 222222 788888888888888754 5 788
Q ss_pred CceEEEcCCCCccccCC
Q 035646 565 KIVELNMRYSRIEQMWC 581 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~ 581 (584)
+|.+|.|+.+.|.+||.
T Consensus 198 sL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQ 214 (873)
T ss_pred hheeeecccCcccccCH
Confidence 88888888888888874
No 420
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.75 E-value=0.05 Score=52.63 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=34.4
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..|.++|..+=.....+.|.|.+|+|||+||.+++......-..++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455555433334579999999999999999998765434445667775
No 421
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.75 E-value=3.5 Score=41.23 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=48.4
Q ss_pred CCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEcccc-chhhccc-cceEeecCCCCHHHHHHHhc--CCchhHH
Q 035646 279 HKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDK-HLLMMHG-VDEIYNLRELHDDKALQLFC--GLPLALK 352 (584)
Q Consensus 279 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~--G~PLal~ 352 (584)
+++-++|+|+++. ......++..+..-.+++.+|++|.+. .+++... ....+.+.+ +.++..+.+. |.+-...
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~~g~~~~~a 181 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQKGLLKTQA 181 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHHcCCChHHH
Confidence 4566899999974 556777777666556667777666554 4444322 335667766 6777666666 6654433
Q ss_pred Hhhhhh
Q 035646 353 VLGSFL 358 (584)
Q Consensus 353 ~~~~~L 358 (584)
.+.+.+
T Consensus 182 ~~la~~ 187 (290)
T PRK07276 182 ELLAKL 187 (290)
T ss_pred HHHHHH
Confidence 333333
No 422
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.75 E-value=0.15 Score=48.12 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.4
Q ss_pred EEEEEecCCccHHHHHHHHHh
Q 035646 200 MIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~ 220 (584)
+++|+|..|+|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999873
No 423
>PRK13948 shikimate kinase; Provisional
Probab=94.74 E-value=0.024 Score=52.61 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=23.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.+.|.++|+.|+||||+++.++++...
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 478999999999999999999987643
No 424
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.72 E-value=0.072 Score=59.95 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=56.9
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCC---
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLP--- 259 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~--- 259 (584)
...|..+|. .+=...+++-|+|.+|+||||||.+++......-..++|+. .....+. ..+..+.-..
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId----~E~t~~~-----~~A~~lGvDl~~l 115 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID----AEHALDP-----DYAKKLGVDTDSL 115 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC----CccchhH-----HHHHHcCCChhHe
Confidence 455666665 33334688999999999999999988775544446677876 2222221 1333321110
Q ss_pred -CCCCcChhhhHHHHHHHHc-CCCcEEEEeCCC
Q 035646 260 -NNGIWNVYDGINIIGRRLR-HKKVLLIIDDVV 290 (584)
Q Consensus 260 -~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~ 290 (584)
.....+.+.....+...++ ++.-|+|+|.+.
T Consensus 116 lv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 116 LVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 0112233444444555453 467799999983
No 425
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=1.2 Score=44.68 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=84.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc---------cc-ceEEEEechhhcccCChHHHHHHHHH
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN---------FE-ASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------f~-~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
++.+.+.+..+ .-.++..++|..|.||+++|..+++.+-.. .+ ...++. . ......+.++. ++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~vd~Ir-~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCCHHHHH-HHHH
Confidence 34455555432 235788899999999999999999876221 11 111221 0 00111111111 1111
Q ss_pred HHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEEEccc-cchhhc-cccceE
Q 035646 254 QLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSRIVITSRD-KHLLMM-HGVDEI 329 (584)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~-~~~~~~ 329 (584)
.+.-. ..-.+.+=++|+|+++.. .....++..+...++++.+|++|.+ ..+.+. ......
T Consensus 80 ~~~~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 80 KLYFS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred HhccC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 11000 000146778999999643 4456666666555677777765544 444433 334578
Q ss_pred eecCCCCHHHHHHHhc--CCchhHHHhhhhh
Q 035646 330 YNLRELHDDKALQLFC--GLPLALKVLGSFL 358 (584)
Q Consensus 330 ~~l~~L~~~ea~~Lf~--G~PLal~~~~~~L 358 (584)
+++.+++.++..+.+. |.|-....+.+.+
T Consensus 144 ~~f~~l~~~~l~~~l~~~~~~~~~a~~~a~~ 174 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKNKEKEYNWFYAYI 174 (299)
T ss_pred EECCCCCHHHHHHHHHHcCCChhHHHHHHHH
Confidence 9999999999987776 6554433333333
No 426
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.69 E-value=0.26 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|..|+|||||++.++..
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999864
No 427
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.68 E-value=0.27 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
...|+|+|..|+|||||++.+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998863
No 428
>PRK13946 shikimate kinase; Provisional
Probab=94.68 E-value=0.025 Score=52.70 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=23.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.+.|.+.|++|+||||+++.++++..-
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999987743
No 429
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.68 E-value=0.095 Score=55.04 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.0
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
..++|.|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3799999999999999999874
No 430
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.68 E-value=0.23 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|+|..|.|||||.+.++...
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhc
Confidence 589999999999999999998754
No 431
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.68 E-value=0.026 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+++|.|++|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 432
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.67 E-value=0.039 Score=58.06 Aligned_cols=53 Identities=21% Similarity=0.120 Sum_probs=36.2
Q ss_pred ccccccchhhHHHHHHHhh-------hc-C------CceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 174 LEHLVGIDSHLKNLRLLMD-------KE-C------NVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~-------~~-~------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
...++|.+..++.+...+. .. . -....+.++|++|+|||+||+.++......|
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 3557888887777644431 00 0 0135689999999999999999998664433
No 433
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.095 Score=47.32 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=59.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
.+++|.|..|.|||||.+.++.... .....+++... .... ..... ....+.-.. ....-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~~----~~~~i~~~~--qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLEE----LRRRIGYVP--QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHHH----HHhceEEEe--eCCHHHHHHHHHHHHHh
Confidence 5899999999999999999987543 23444555321 0110 00111 111100000 01111223334566666
Q ss_pred CCCcEEEEeCCC---CHHHHHHHhcCCCCC-CCCcEEEEEccccchhhc
Q 035646 279 HKKVLLIIDDVV---DIKQLECLAGKREWF-GPGSRIVITSRDKHLLMM 323 (584)
Q Consensus 279 ~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IiiTTR~~~v~~~ 323 (584)
..+-++++|+.. +......+...+... ..+.-++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 778899999984 333322222221111 224568888877655444
No 434
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.66 E-value=0.077 Score=58.88 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=43.5
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEE
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLA 233 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 233 (584)
.+.++|.++.++.+...+..+ +.+.++|++|+|||++|+.+++.+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 577899999888888877744 256699999999999999999977554 34445554
No 435
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.60 E-value=0.056 Score=53.05 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=34.3
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
.+|...+....+...+|+|+|.||+|||||...+..++..+-..+..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl 85 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL 85 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE
Confidence 344444544455678999999999999999999988765554433333
No 436
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.60 E-value=0.1 Score=52.66 Aligned_cols=98 Identities=16% Similarity=0.057 Sum_probs=53.8
Q ss_pred HHHHHHHhhhc-CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCC--
Q 035646 184 LKNLRLLMDKE-CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPN-- 260 (584)
Q Consensus 184 ~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~-- 260 (584)
...|...|..+ -...+++-|+|..|+||||||..+.......-...+|++. + ..+ -...+..+ +-+-
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~-----e-~~l---d~~~a~~l-Gvdl~r 107 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA-----E-HAL---DPEYAESL-GVDLDR 107 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES-----S-S------HHHHHHT-T--GGG
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC-----c-ccc---hhhHHHhc-Cccccc
Confidence 34555556422 1224689999999999999999998876555566788861 1 111 12222332 1111
Q ss_pred ---CCCcChhhhHHHHHHHHcC-CCcEEEEeCCCC
Q 035646 261 ---NGIWNVYDGINIIGRRLRH-KKVLLIIDDVVD 291 (584)
Q Consensus 261 ---~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 291 (584)
...+..++....+...++. .--++|+|-|-.
T Consensus 108 llv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 108 LLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred eEEecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 0123344555555555543 446899999843
No 437
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=94.59 E-value=0.16 Score=54.20 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..|+|+|.+|+|||||...+...
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46889999999999999999874
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.59 E-value=0.05 Score=61.93 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=82.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh-cccccceEEEEechhhcccCChHHHHHHHHHHHhCCC--CCCCcChhhhHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT-SHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLP--NNGIWNVYDGINIIG 274 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~ 274 (584)
.+.++|+|+.|.|||||.+.+.-.. .. ..++++.... .+. ...+.++...+.... .....+.......+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G~~Vpa~~-~~~----~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMF--QSGIPIPANE-HSE----IPYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHH--HhCCCccCCc-ccc----ccchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 4789999999999999999987641 11 1111111000 000 000111110000000 000111111222233
Q ss_pred HHHc--CCCcEEEEeCCC---CHHHHH----HHhcCCCCCCCCcEEEEEccccchhhccc----------------cceE
Q 035646 275 RRLR--HKKVLLIIDDVV---DIKQLE----CLAGKREWFGPGSRIVITSRDKHLLMMHG----------------VDEI 329 (584)
Q Consensus 275 ~~L~--~k~~LlVlDdv~---~~~~~~----~l~~~~~~~~~gs~IiiTTR~~~v~~~~~----------------~~~~ 329 (584)
..+. ..+-|+++|..- ++..-. .++..+. ..|+.+|+||....+..... ....
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~ 472 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPT 472 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceE
Confidence 3333 478999999984 233222 2232322 35788999998876532210 0012
Q ss_pred eecC--CCCHHHHHHHhc--CCchhHHHhhhhhhCCCHHHHHHHHHHHhh
Q 035646 330 YNLR--ELHDDKALQLFC--GLPLALKVLGSFLYGKTTKEWESALKRLKR 375 (584)
Q Consensus 330 ~~l~--~L~~~ea~~Lf~--G~PLal~~~~~~L~~~~~~~w~~~l~~l~~ 375 (584)
|.+. .-....|.+... |+|-.+..-|..+.+.....+..+++++..
T Consensus 473 Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 473 YKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred EEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 112233444333 999998888888866555566666666543
No 439
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.56 E-value=0.066 Score=53.13 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=27.6
Q ss_pred CceEEEEEEecCCccHHHHHHHHHhhhccccc
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE 227 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 227 (584)
.+..++.|.|.+|+|||||...+.........
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999998766553
No 440
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.56 E-value=0.071 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
-++.|+|.+|+||||+.+.+.-..
T Consensus 410 dvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred CeEEEEecCCCCcchHHHHHHHHh
Confidence 489999999999999999988643
No 441
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.55 E-value=0.046 Score=49.40 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=28.5
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
...+|-++|++|+||||+|.+++.+.....-....+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457999999999999999999999876654433333
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.54 E-value=0.038 Score=50.57 Aligned_cols=24 Identities=38% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEecCCccHHHHHHHHHhhhcc
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999987643
No 443
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.1 Score=50.66 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCcEEEEeCC----C--CHHHHHHHhcCCCCCCCCcEEEEEccccchhh
Q 035646 270 INIIGRRLRHKKVLLIIDDV----V--DIKQLECLAGKREWFGPGSRIVITSRDKHLLM 322 (584)
Q Consensus 270 ~~~l~~~L~~k~~LlVlDdv----~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 322 (584)
...+.+.|.+++=||+||.- | ....+-.++..+. ..|.-||++|-+-....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhH
Confidence 34567788899999999965 2 2334445555544 23888999998865433
No 444
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.52 E-value=0.038 Score=53.37 Aligned_cols=48 Identities=25% Similarity=0.068 Sum_probs=33.1
Q ss_pred HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEE
Q 035646 186 NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLA 233 (584)
Q Consensus 186 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 233 (584)
.|.++|..+=....++.|.|.+|+|||+||.+++.....+ -+.++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3455554332234699999999999999999988765454 55667775
No 445
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.51 E-value=0.18 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.5
Q ss_pred EEEEecCCccHHHHHHHHHhhhc
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+.+.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998764
No 446
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.51 E-value=0.076 Score=55.03 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=60.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccccc-c-eEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFE-A-SSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
..+.|+|+.|+||||++..+.+.+....+ . ++-+.+..+..- .+...+.. ..+ ... ..+.......++..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~~~~~--~~q----~ev-g~~~~~~~~~l~~a 221 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPDDLLP--PAQ----SQI-GRDVDSFANGIRLA 221 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCceeec--ccc----ccc-CCCccCHHHHHHHh
Confidence 47889999999999999999876643322 2 233321111100 00000000 000 000 11222445678888
Q ss_pred HcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccc
Q 035646 277 LRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRD 317 (584)
Q Consensus 277 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~ 317 (584)
|+..+=.|+++.+.+.+..+..+... ..|..++-|--.
T Consensus 222 LR~~PD~I~vGEiRd~et~~~al~aa---~TGH~v~tTlHa 259 (372)
T TIGR02525 222 LRRAPKIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLHV 259 (372)
T ss_pred hccCCCEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeCC
Confidence 99999999999999988877654332 235444444433
No 447
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.51 E-value=0.024 Score=54.33 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=49.4
Q ss_pred ccccccccccEEEecCc--c----CCCCccccccCeeEEEecCCCCCCCCCCC----CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNL--Q----LPEGLEYLSNELRLLERHGYPLRSLPSNF----QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~--~----lp~~i~~l~~~LryL~l~~~~l~~lP~~i----~L~~L~~L~l~~s~i~~l 579 (584)
..|.+|.+|+.|+++.+ + ++-....++ +|++|++++++|+- ++++ +|+||..||+.+|.++++
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTNL 131 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCC-ceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCcccc
Confidence 55788999999999888 2 333444556 99999999997765 4444 688999999999988765
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.50 E-value=0.028 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.++|+|+.|+|||||++.++......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865433
No 449
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.48 E-value=0.024 Score=30.32 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=10.7
Q ss_pred CeeEEEecCCCCCCCC
Q 035646 543 ELRLLERHGYPLRSLP 558 (584)
Q Consensus 543 ~LryL~l~~~~l~~lP 558 (584)
+||.|++++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 7889999999998887
No 450
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.48 E-value=0.0095 Score=63.03 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=61.7
Q ss_pred ccceeEEEeccCcccccccccccccccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CC
Q 035646 490 GTKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QP 563 (584)
Q Consensus 490 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L 563 (584)
+.++++.+.+.... ...... ..+-.++.|+.|+|+.+.+ +++-...+ +|.+|+|+.++|.+||++ + .|
T Consensus 267 ~l~kme~l~L~~N~---l~~vn~--g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 267 GLEKMEHLNLETNR---LQAVNE--GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred eecccceeecccch---hhhhhc--ccccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHH
Confidence 35566666555441 112222 5667788888999988743 44444455 899999999999999876 5 89
Q ss_pred CCceEEEcCCCCccccCCC
Q 035646 564 DKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 564 ~~L~~L~l~~s~i~~lp~~ 582 (584)
..|++|+|+++.|..|-+|
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred HHhhhhcccccchHHHHhh
Confidence 9999999999988877654
No 451
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.46 E-value=0.18 Score=55.07 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=37.5
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+..|.++|..+=....++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 55666666533333578899999999999999999987655556777775
No 452
>PRK14530 adenylate kinase; Provisional
Probab=94.40 E-value=0.032 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=21.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+.|.|.|++|+||||+|+.++.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999866
No 453
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.37 E-value=0.052 Score=48.07 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=26.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcc-cccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSH-NFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~ 233 (584)
++|.|+|..|+|||||++.+.+.... .+...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999998764 454444554
No 454
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.37 E-value=0.13 Score=55.95 Aligned_cols=128 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEEEecCCccHHHHHHHHHhhhcccccceEEEEe--chhhcccCChHHHHHHHHHHHhCCCCCC----------------
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTSHNFEASSCLAN--VREISEEGGLTSLQNQLLSQLLKLPNNG---------------- 262 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~--~~~~s~~~~~~~~~~~i~~~l~~~~~~~---------------- 262 (584)
|+|+|+.|+|||||.+.+.......=..+.|=.. +..+.+.......-..++..+.......
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Q ss_pred ---------CcChhhhHHHHHHHHcCCCcEEEEe------CCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhccccc
Q 035646 263 ---------IWNVYDGINIIGRRLRHKKVLLIID------DVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMMHGVD 327 (584)
Q Consensus 263 ---------~~~~~~~~~~l~~~L~~k~~LlVlD------dv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~ 327 (584)
...-+...-.+...+-.++-+|||| |+++.+.++..+.. -+|+ ||+.|-++....... .
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~----f~Gt-vl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD----FEGT-VLLVSHDRYFLDRVA-T 504 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh----CCCe-EEEEeCCHHHHHhhc-c
Q ss_pred eEeecCC
Q 035646 328 EIYNLRE 334 (584)
Q Consensus 328 ~~~~l~~ 334 (584)
.++.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
No 455
>PRK04182 cytidylate kinase; Provisional
Probab=94.36 E-value=0.036 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.8
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|+|.|+.|+||||+|+.++.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998763
No 456
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.35 E-value=0.14 Score=49.98 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.5
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+|+|.|.+|+||||+|..+.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999876543
No 457
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.34 E-value=0.063 Score=54.33 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=32.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
.+++.+.|.||+||||+|.+.+-........+.-+. ..+.+++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhc
Confidence 478999999999999999998877665554444443 334444444443
No 458
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.34 E-value=0.037 Score=50.27 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=24.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
+-|.++||.|+||||+.+.+++...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998776555
No 459
>COG4240 Predicted kinase [General function prediction only]
Probab=94.33 E-value=0.21 Score=47.07 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=47.4
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccc-cceEEEEechhhcccCChHHHHHHHHHHH----hCCCCCCCcChhhhHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNF-EASSCLANVREISEEGGLTSLQNQLLSQL----LKLPNNGIWNVYDGIN 271 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~~~~~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~ 271 (584)
..-+++|.|+-|+||||++..+++.....+ +...... + ..-.-..+-...++++. .....+...+..-+.+
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS-L---DDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-L---DDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee-h---hhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 467999999999999999999998766555 3344332 1 11111222233344331 2223334555555666
Q ss_pred HHHHHHcCCC
Q 035646 272 IIGRRLRHKK 281 (584)
Q Consensus 272 ~l~~~L~~k~ 281 (584)
.+....+++.
T Consensus 125 VLnai~~g~~ 134 (300)
T COG4240 125 VLNAIARGGP 134 (300)
T ss_pred HHHHHhcCCC
Confidence 6666666653
No 460
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.32 E-value=0.17 Score=55.54 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
...++|+|+.|+|||||++.+...
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 461
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.31 E-value=0.052 Score=59.62 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=41.1
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
++..+-|.+-.+.|.++.........+|.|+|++|+||||+|+.++.+...
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 667778887777777776655555668999999999999999999987754
No 462
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.31 E-value=0.45 Score=42.07 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=31.7
Q ss_pred cHHHHHHhhhcceEEEEeccCcccchhhHHHHHHHHHHhhcCCCcEEEeeeeccC
Q 035646 63 SPGLFKAIEESKISIVVFSRSYAFSTWCLDELVHILECKNTNNQQMVYPIFYDVE 117 (584)
Q Consensus 63 ~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~~v~Pvf~~v~ 117 (584)
..++.++|++++..+.|++.....+.+. .++...+.... .+ ..++.|+=+.|
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~-k~~iivlNK~D 53 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PR-KKNILLLNKAD 53 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CC-CcEEEEEechh
Confidence 3578899999999999998765555442 24555444331 23 34555544443
No 463
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.30 E-value=0.044 Score=51.03 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=28.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
+++.|+|+.|+|||||+..+.......|...+..
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 6899999999999999999999888778544444
No 464
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.30 E-value=0.018 Score=56.09 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=25.4
Q ss_pred cccccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 035646 520 MINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 520 ~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~ 578 (584)
.+.+|+|+++.+.+- +++..|+ +|..|+|+++.+.++--.= +|-|..+|+|.++.|+.
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred ccceeEEeccccceeeehhhhhcc-cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 344444444444321 2344444 4444444444444443333 44444444444444443
No 465
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.29 E-value=0.13 Score=50.59 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=32.8
Q ss_pred cccccchhh----HHHHHHHhhhc-CCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSH----LKNLRLLMDKE-CNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~----~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..++|..-. +..|...+..+ +..+-++.++|.+|.||.-.++.+++..
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 344554433 44444444433 3447799999999999999999999854
No 466
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.29 E-value=0.044 Score=50.17 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.4
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3579999999999999999999987654
No 467
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.28 E-value=0.04 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|.|.|.+|+||||+|..++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 468
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.27 E-value=0.29 Score=52.13 Aligned_cols=71 Identities=23% Similarity=0.163 Sum_probs=45.2
Q ss_pred cchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc-ccccceEEEEechhhcccCChHHHHHHHHHHHh
Q 035646 179 GIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS-HNFEASSCLANVREISEEGGLTSLQNQLLSQLL 256 (584)
Q Consensus 179 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~ 256 (584)
|...-...|.+++. +-....++.|.|.+|+|||++|..++.... .+-..++|+. -.-....+...++....
T Consensus 176 gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 176 GLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASKS 247 (421)
T ss_pred ceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHHc
Confidence 33444455555554 333346899999999999999999997654 2223445553 34456677777766543
No 469
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.26 E-value=0.23 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=21.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..++|.|..|+|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999998875
No 470
>PRK13975 thymidylate kinase; Provisional
Probab=94.26 E-value=0.041 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=23.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998754
No 471
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.035 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEEecCCccHHHHHHHHH
Q 035646 200 MIGICVMGGIGKTTLAGVVY 219 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~ 219 (584)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 472
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.25 E-value=0.011 Score=59.69 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=54.7
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~l 579 (584)
..|.++++||+|+|+++++ +..+..+. +|+.|.|..++|+.+-+.. +|..|.+|+|.+++|+.+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 5689999999999999865 34777787 8999999999999888775 799999999999998876
No 473
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.24 E-value=0.026 Score=63.79 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=45.1
Q ss_pred cccccEEEecCccCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 035646 520 MINLRMLLIRNLQLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 520 ~~~LrvL~L~~~~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~ 578 (584)
.++|+.|+|++|.+.. +-.++.+|++|+++++++++||+++ ++.+|++|+|+++.+..
T Consensus 401 ~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 PSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 3568888888886432 2223447889999999999999999 89999999999988753
No 474
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.23 E-value=0.037 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.5
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+.|+|++|+||||+|+.++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998763
No 475
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.072 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhccc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.|+|+|-||+||||+|..++.++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977665444
No 476
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.21 E-value=0.024 Score=52.87 Aligned_cols=21 Identities=24% Similarity=-0.062 Sum_probs=18.8
Q ss_pred EEEEEecCCccHHHHHHHHHh
Q 035646 200 MIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~ 220 (584)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 477
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.21 E-value=0.037 Score=48.41 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=21.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..-|.|+|-+|+||||||.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3568899999999999999999644
No 478
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.19 E-value=0.038 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=22.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|.|+|+.|+||||||+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998653
No 479
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.17 E-value=0.066 Score=57.97 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=41.6
Q ss_pred ccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 176 HLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+++--.+-++++..||... ....+++.++|++|+||||.++.+++... |+..-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 3444566788899998742 23357999999999999999999998763 45555653
No 480
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.17 E-value=0.041 Score=52.62 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=20.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 481
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.38 Score=50.01 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=22.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
-|--.++|+||.|||++..++++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc
Confidence 4667899999999999999999865
No 482
>PRK10436 hypothetical protein; Provisional
Probab=94.15 E-value=0.25 Score=52.79 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=60.5
Q ss_pred ccchh-hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHh
Q 035646 178 VGIDS-HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLL 256 (584)
Q Consensus 178 vGR~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~ 256 (584)
.|... .++.+.+++... ...|.|+|+.|+||||....+.......-..++=+.+-. ...+ ..+ .+.
T Consensus 200 LG~~~~~~~~l~~~~~~~---~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPv----E~~l----~gi-~Q~- 266 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQP---QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPV----EIPL----AGI-NQT- 266 (462)
T ss_pred cCcCHHHHHHHHHHHHhc---CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCc----cccC----CCc-ceE-
Confidence 34433 344455555433 368999999999999988777665433222122222110 0000 000 000
Q ss_pred CCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcC
Q 035646 257 KLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIKQLECLAGK 301 (584)
Q Consensus 257 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~ 301 (584)
.............++..|+..+=.|++..+.+.+........
T Consensus 267 ---~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~A 308 (462)
T PRK10436 267 ---QIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKA 308 (462)
T ss_pred ---eeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHH
Confidence 001111124566788899999999999999998877654433
No 483
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.15 E-value=0.62 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|..|.|||||++.++-.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999863
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.14 E-value=0.035 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
++++|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999754
No 485
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.14 E-value=0.21 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++.|.|.+|+||||+|+.+.....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999998764
No 486
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.14 E-value=0.06 Score=58.26 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=26.6
Q ss_pred HhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 190 LMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 190 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+....+++.+|+|.|.+|+||||||+.++...
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 333344567899999999999999999998754
No 487
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.14 E-value=0.16 Score=50.83 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.0
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...+|||.|..|+||||+|+.+.....
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999988766553
No 488
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.12 E-value=0.19 Score=56.08 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..++|+|..|.|||||++.+...
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998863
No 489
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.12 E-value=0.25 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=19.0
Q ss_pred EEEEEecCCccHHHHHHHHH
Q 035646 200 MIGICVMGGIGKTTLAGVVY 219 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~ 219 (584)
+++|+|..|+|||||...++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999985
No 490
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.11 E-value=0.15 Score=52.15 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=36.2
Q ss_pred hhhHHHHHHHhhhcC-CceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 181 DSHLKNLRLLMDKEC-NVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 181 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+.-.+.|.+.+...+ +...+|+|.|.=|+|||++.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445667777777543 567899999999999999999999887666
No 491
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.11 E-value=0.063 Score=60.79 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=37.6
Q ss_pred cccccEEEecCccCCCCccccccCeeEEEecCCCCCCCCCCC------------------CCCCceEEEcCCCCccccCC
Q 035646 520 MINLRMLLIRNLQLPEGLEYLSNELRLLERHGYPLRSLPSNF------------------QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 520 ~~~LrvL~L~~~~lp~~i~~l~~~LryL~l~~~~l~~lP~~i------------------~L~~L~~L~l~~s~i~~lp~ 581 (584)
+++|+.|+|++|.|-. +..++.+|+.|++.+|.++.+|... .+.+|+.|+|++++++.+|.
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCC
Confidence 4678899998885431 1122335556665555555554321 24677778888777777775
Q ss_pred C
Q 035646 582 G 582 (584)
Q Consensus 582 ~ 582 (584)
.
T Consensus 320 l 320 (788)
T PRK15387 320 L 320 (788)
T ss_pred C
Confidence 3
No 492
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.11 E-value=0.29 Score=50.52 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=44.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc--ccccceEEEEechhhcccCCh-HHHHHHHHHHHhCCCCCCCcChhhhHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS--HNFEASSCLANVREISEEGGL-TSLQNQLLSQLLKLPNNGIWNVYDGINIIG 274 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~~~~~~s~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 274 (584)
.++|.++|+.|+||||-...++.++. ..-..+..+. ..++.+ ..-+-+....+++-+-.-..+..+....+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE-----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 68999999999999976666665443 3333455553 122222 122233344445443333334444333332
Q ss_pred HHHcCCCcEEEEeCC
Q 035646 275 RRLRHKKVLLIIDDV 289 (584)
Q Consensus 275 ~~L~~k~~LlVlDdv 289 (584)
.+++. =++.+|-+
T Consensus 278 -~l~~~-d~ILVDTa 290 (407)
T COG1419 278 -ALRDC-DVILVDTA 290 (407)
T ss_pred -HhhcC-CEEEEeCC
Confidence 23333 45666766
No 493
>PF13479 AAA_24: AAA domain
Probab=94.09 E-value=0.13 Score=49.08 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=22.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
-.+.|+|.+|+||||+|..+ +..+++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~--------~k~l~id 30 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL--------PKPLFID 30 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC--------CCeEEEE
Confidence 46889999999999999876 5556665
No 494
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.09 E-value=0.042 Score=52.21 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=22.9
Q ss_pred CCceEEEEEEecCCccHHHHHHHHHhh
Q 035646 195 CNVVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 195 ~~~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
....+.+.|+|++|+|||||+..+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345689999999999999999998753
No 495
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.37 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|..|.|||||++.++...
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999998743
No 496
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.06 E-value=0.11 Score=52.97 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 186 NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 186 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.+.+.+........+|+|.|.+|+|||||+..+....+..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443323457899999999999999999988866543
No 497
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=0.19 Score=47.52 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=56.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc---c-cceEEEEech-hhcc-cCChHHHHHHHHHHHhCCCCCCCcChhhhHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN---F-EASSCLANVR-EISE-EGGLTSLQNQLLSQLLKLPNNGIWNVYDGINI 272 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~---f-~~~~w~~~~~-~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 272 (584)
--..|.|++|+|||||.+.+++-+... | +..+-+.+-+ +... ..+..+. .+... .+..+..-....
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R------~dVld~cpk~~g 209 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRR------MDVLDPCPKAEG 209 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhh------hhhcccchHHHH
Confidence 346789999999999999999855433 3 2223222110 0000 0000000 00000 011111111112
Q ss_pred HHHHH-cCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEcccc
Q 035646 273 IGRRL-RHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDK 318 (584)
Q Consensus 273 l~~~L-~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 318 (584)
+.... ...+=++|+|.+-..++...+...+ ..|.+++.|..-.
T Consensus 210 mmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 210 MMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 22222 3468899999998777766666553 4688887776543
No 498
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.05 E-value=0.064 Score=56.23 Aligned_cols=53 Identities=25% Similarity=0.170 Sum_probs=36.7
Q ss_pred ccccccchhhHHHHHHHhh-------h---cC--C----ceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 174 LEHLVGIDSHLKNLRLLMD-------K---EC--N----VVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
...++|.++.++.+...+. . .. + ....+.++|++|+|||+||+.++......|
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 4567888877777754431 1 00 1 125799999999999999999998664433
No 499
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.05 E-value=0.28 Score=48.37 Aligned_cols=67 Identities=21% Similarity=0.108 Sum_probs=43.9
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc-cceEEEEechhhcccCChHHHHHHHHHHHhCC
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-EASSCLANVREISEEGGLTSLQNQLLSQLLKL 258 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~ 258 (584)
..|.+.+. +-....++.|-|.+|+|||++|..++......- ..+.|+. -.-....+...++....+.
T Consensus 7 ~~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------lEm~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 7 PALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------LEMSEEELAARLLARLSGV 74 (259)
T ss_dssp HHHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------SSS-HHHHHHHHHHHHHTS
T ss_pred HHHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------CCCCHHHHHHHHHHHhhcc
Confidence 44555553 212235888999999999999999998765542 5566653 4455677777777776443
No 500
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.03 E-value=0.051 Score=62.06 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=83.7
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC--CCcChhhhHHHHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN--GIWNVYDGINIIG 274 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~ 274 (584)
+.+++.|+|+.+.||||+.+.+.--.- -...+++++. .. .....++..++..+...... ...+.......+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~-maq~G~~vpa----~~-~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~ 399 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL-MAKSGLPIPA----NE-PSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIV 399 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH-HHHhCCCccc----CC-CccccccceEEEecCCccchhhchhHHHHHHHHHH
Confidence 357899999999999999999874210 0011112210 00 00000011111110000000 0111112222233
Q ss_pred HHHc--CCCcEEEEeCCC---CHHHH----HHHhcCCCCCCCCcEEEEEccccchhhccccc----------------eE
Q 035646 275 RRLR--HKKVLLIIDDVV---DIKQL----ECLAGKREWFGPGSRIVITSRDKHLLMMHGVD----------------EI 329 (584)
Q Consensus 275 ~~L~--~k~~LlVlDdv~---~~~~~----~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~----------------~~ 329 (584)
..+. ..+-|+++|..- ++..- ..++..+. ..|+.+|+||....+....... ..
T Consensus 400 ~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~ 477 (782)
T PRK00409 400 RILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRPT 477 (782)
T ss_pred HHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEE
Confidence 3332 478899999984 23222 22232222 3478899999987654321100 11
Q ss_pred eec--CCCCHHHHHHHhc--CCchhHHHhhhhhhCCCHHHHHHHHHHHhh
Q 035646 330 YNL--RELHDDKALQLFC--GLPLALKVLGSFLYGKTTKEWESALKRLKR 375 (584)
Q Consensus 330 ~~l--~~L~~~ea~~Lf~--G~PLal~~~~~~L~~~~~~~w~~~l~~l~~ 375 (584)
|.+ +.-....|.++.. |+|-.+..-|.-+..........+++++..
T Consensus 478 Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 478 YRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 221 1222334444444 999999988888876655566666666554
Done!