Query 035646
Match_columns 584
No_of_seqs 437 out of 3440
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 07:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-42 3.6E-47 319.0 13.1 157 10-168 27-183 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.6E-42 5.5E-47 313.3 11.1 157 13-173 3-159 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-39 5.2E-44 355.3 20.2 275 178-465 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2.6E-35 8.7E-40 352.8 24.7 281 174-464 123-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 6.5E-35 2.2E-39 324.2 20.5 263 176-457 129-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 4.3E-33 1.5E-37 308.0 23.3 273 174-460 123-448 (591)
7 3h16_A TIR protein; bacteria T 100.0 1.7E-30 5.7E-35 234.3 3.5 122 13-136 15-136 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 1.2E-25 4.1E-30 199.4 3.0 135 13-153 5-145 (146)
9 2js7_A Myeloid differentiation 99.9 6.7E-23 2.3E-27 184.8 4.0 103 13-117 11-116 (160)
10 2j67_A TOLL like receptor 10; 99.9 1.6E-22 5.3E-27 185.2 4.9 102 13-116 30-134 (178)
11 1fyx_A TOLL-like receptor 2; b 99.9 6.9E-23 2.4E-27 182.9 2.1 103 15-120 2-109 (149)
12 1t3g_A X-linked interleukin-1 99.8 1.8E-21 6.3E-26 175.2 6.1 103 17-119 1-115 (159)
13 2qen_A Walker-type ATPase; unk 99.7 5.1E-16 1.7E-20 159.3 19.1 264 174-458 11-349 (350)
14 2fna_A Conserved hypothetical 99.7 1.9E-15 6.5E-20 155.3 18.9 267 174-457 12-356 (357)
15 1w5s_A Origin recognition comp 99.6 4.9E-14 1.7E-18 148.0 16.8 266 173-442 20-371 (412)
16 3j0a_A TOLL-like receptor 5; m 99.5 2.3E-15 8E-20 172.7 6.8 103 14-118 666-774 (844)
17 2qby_B CDC6 homolog 3, cell di 99.5 4.2E-12 1.4E-16 131.9 25.5 261 174-442 19-339 (384)
18 2qby_A CDC6 homolog 1, cell di 99.4 2.8E-12 9.5E-17 133.0 20.0 265 174-442 19-348 (386)
19 2v1u_A Cell division control p 99.4 1.8E-11 6.1E-16 127.0 23.1 265 174-442 18-351 (387)
20 1fnn_A CDC6P, cell division co 99.4 4.1E-11 1.4E-15 124.5 24.9 287 174-464 16-387 (389)
21 1njg_A DNA polymerase III subu 99.1 1.7E-09 5.7E-14 104.0 15.2 160 175-345 23-195 (250)
22 2chg_A Replication factor C sm 99.0 9.8E-09 3.3E-13 97.2 18.0 151 175-345 17-171 (226)
23 1sxj_B Activator 1 37 kDa subu 98.9 1.3E-08 4.6E-13 102.5 13.0 149 175-345 21-176 (323)
24 1jbk_A CLPB protein; beta barr 98.7 1.3E-07 4.4E-12 87.1 13.3 47 175-223 22-68 (195)
25 1iqp_A RFCS; clamp loader, ext 98.7 9.7E-08 3.3E-12 96.3 13.4 151 175-345 25-179 (327)
26 1hqc_A RUVB; extended AAA-ATPa 98.6 3.6E-07 1.2E-11 92.1 15.1 238 175-446 12-302 (324)
27 3pfi_A Holliday junction ATP-d 98.6 2.1E-06 7.3E-11 87.0 19.0 243 175-451 29-322 (338)
28 3te6_A Regulatory protein SIR3 98.6 4.3E-07 1.5E-11 90.5 13.4 165 175-345 20-208 (318)
29 3h4m_A Proteasome-activating n 98.6 4E-07 1.4E-11 90.0 12.9 148 174-345 16-198 (285)
30 2chq_A Replication factor C sm 98.5 3E-06 1E-10 84.9 17.8 146 175-345 17-171 (319)
31 1jr3_A DNA polymerase III subu 98.5 3.8E-06 1.3E-10 86.3 17.8 160 175-345 16-188 (373)
32 1d2n_A N-ethylmaleimide-sensit 98.4 2.5E-05 8.4E-10 76.5 20.2 150 174-345 32-209 (272)
33 2qz4_A Paraplegin; AAA+, SPG7, 98.4 8.2E-06 2.8E-10 79.3 16.2 148 175-345 6-187 (262)
34 2p65_A Hypothetical protein PF 98.3 2.2E-06 7.4E-11 78.4 10.4 47 175-223 22-68 (187)
35 3syl_A Protein CBBX; photosynt 98.3 1.6E-06 5.5E-11 86.7 10.0 148 175-345 31-214 (309)
36 3uk6_A RUVB-like 2; hexameric 98.3 2E-05 6.7E-10 80.8 18.0 52 174-225 43-97 (368)
37 3cf0_A Transitional endoplasmi 98.3 4.6E-05 1.6E-09 75.8 19.7 148 175-345 15-196 (301)
38 3eie_A Vacuolar protein sortin 98.2 1.6E-05 5.6E-10 79.9 15.6 147 175-345 18-194 (322)
39 3bos_A Putative DNA replicatio 98.2 2E-06 6.8E-11 82.3 7.9 139 175-345 28-184 (242)
40 3n70_A Transport activator; si 98.2 2.9E-06 1E-10 74.7 8.2 47 176-222 2-48 (145)
41 1l8q_A Chromosomal replication 98.2 2.1E-05 7.2E-10 79.2 15.6 149 175-345 11-176 (324)
42 2z4s_A Chromosomal replication 98.2 1.3E-05 4.5E-10 84.2 14.4 150 175-345 105-273 (440)
43 3d8b_A Fidgetin-like protein 1 98.2 2.9E-05 9.8E-10 79.3 16.5 147 175-345 84-261 (357)
44 2wfh_A SLIT homolog 2 protein 98.2 4.5E-06 1.5E-10 77.4 8.5 69 513-582 46-120 (193)
45 1xwi_A SKD1 protein; VPS4B, AA 98.2 9.4E-05 3.2E-09 74.3 18.9 147 175-345 12-189 (322)
46 3e6j_A Variable lymphocyte rec 98.1 6.6E-06 2.2E-10 78.5 9.5 67 515-582 82-153 (229)
47 1sxj_E Activator 1 40 kDa subu 98.1 1.2E-05 4E-10 82.0 12.0 162 175-345 14-203 (354)
48 4b8c_D Glucose-repressible alc 98.1 2.1E-06 7.2E-11 96.3 6.8 82 491-579 246-331 (727)
49 2qp9_X Vacuolar protein sortin 98.1 6.5E-05 2.2E-09 76.6 17.3 147 175-345 51-227 (355)
50 2ell_A Acidic leucine-rich nuc 98.1 5.2E-06 1.8E-10 74.8 7.8 65 515-580 65-136 (168)
51 2je0_A Acidic leucine-rich nuc 98.1 2.6E-06 9E-11 75.1 5.4 83 491-581 41-130 (149)
52 1sxj_A Activator 1 95 kDa subu 98.1 3.3E-05 1.1E-09 83.0 15.0 153 175-345 39-219 (516)
53 2zan_A Vacuolar protein sortin 98.1 0.00012 4.3E-09 76.8 19.0 149 174-345 133-311 (444)
54 1sxj_D Activator 1 41 kDa subu 98.1 1.3E-05 4.5E-10 81.5 10.9 160 175-345 37-202 (353)
55 2r9u_A Variable lymphocyte rec 98.1 6E-06 2E-10 75.2 7.4 68 514-582 50-123 (174)
56 3pvs_A Replication-associated 98.1 1.9E-05 6.5E-10 82.9 12.0 141 175-345 26-175 (447)
57 3u61_B DNA polymerase accessor 98.1 1.9E-05 6.4E-10 79.5 11.5 144 175-344 26-174 (324)
58 2r9u_A Variable lymphocyte rec 98.1 5.5E-06 1.9E-10 75.4 6.8 61 521-582 33-99 (174)
59 2ell_A Acidic leucine-rich nuc 98.1 3.8E-06 1.3E-10 75.8 5.7 84 492-580 24-111 (168)
60 4b8c_D Glucose-repressible alc 98.0 3.1E-06 1.1E-10 94.9 5.9 86 491-583 223-312 (727)
61 3hu3_A Transitional endoplasmi 98.0 6.9E-05 2.4E-09 79.5 15.8 148 175-345 204-382 (489)
62 1a9n_A U2A', U2A'; complex (nu 98.0 6.1E-06 2.1E-10 75.1 6.7 81 493-581 43-130 (176)
63 2v9t_B SLIT homolog 2 protein 98.0 7.1E-06 2.4E-10 77.7 7.3 67 515-582 74-146 (220)
64 1p9a_G Platelet glycoprotein I 98.0 1.5E-05 5.1E-10 79.0 9.7 68 515-583 118-191 (290)
65 3vfd_A Spastin; ATPase, microt 98.0 6E-05 2E-09 77.9 14.6 51 174-224 114-174 (389)
66 3pxg_A Negative regulator of g 98.0 2.8E-05 9.4E-10 82.5 12.1 143 175-345 180-335 (468)
67 3e6j_A Variable lymphocyte rec 98.0 8E-06 2.7E-10 77.8 7.2 86 492-583 40-131 (229)
68 4fcg_A Uncharacterized protein 98.0 6.8E-06 2.3E-10 83.0 6.9 86 491-583 103-202 (328)
69 4b4t_J 26S protease regulatory 98.0 0.00017 5.9E-09 73.7 17.2 147 175-345 148-329 (405)
70 1dce_A Protein (RAB geranylger 98.0 9.3E-06 3.2E-10 88.3 8.0 84 491-582 462-551 (567)
71 4fcg_A Uncharacterized protein 98.0 5.1E-06 1.7E-10 83.9 5.4 55 520-575 182-240 (328)
72 2je0_A Acidic leucine-rich nuc 98.0 3.5E-06 1.2E-10 74.3 3.7 84 492-580 17-104 (149)
73 2v9t_B SLIT homolog 2 protein 98.0 2.6E-05 8.8E-10 73.8 10.0 65 515-580 50-120 (220)
74 2o6r_A Variable lymphocyte rec 98.0 1.2E-05 4.2E-10 73.0 7.4 67 515-582 46-118 (177)
75 3b9p_A CG5977-PA, isoform A; A 97.9 0.00014 4.8E-09 72.0 15.1 50 175-224 21-80 (297)
76 3ec2_A DNA replication protein 97.9 3.3E-05 1.1E-09 70.5 9.4 43 181-223 20-63 (180)
77 2gno_A DNA polymerase III, gam 97.9 4.9E-05 1.7E-09 75.6 11.4 142 179-345 1-149 (305)
78 1dce_A Protein (RAB geranylger 97.9 7.4E-06 2.5E-10 89.1 5.8 68 513-583 456-529 (567)
79 4fcw_A Chaperone protein CLPB; 97.9 7.2E-05 2.5E-09 74.6 12.7 50 175-224 17-73 (311)
80 2o6s_A Variable lymphocyte rec 97.9 3.6E-05 1.2E-09 71.9 9.8 67 515-582 70-142 (208)
81 3co5_A Putative two-component 97.9 5E-06 1.7E-10 73.0 3.6 48 176-223 5-52 (143)
82 3g39_A Variable lymphocyte rec 97.9 1.7E-05 5.8E-10 71.8 7.3 65 515-580 48-118 (170)
83 1w8a_A SLIT protein; signaling 97.9 1.8E-05 6E-10 73.2 7.2 63 516-579 49-117 (192)
84 2v70_A SLIT-2, SLIT homolog 2 97.9 1.8E-05 6.3E-10 74.8 7.4 64 515-579 75-144 (220)
85 1lv7_A FTSH; alpha/beta domain 97.9 0.0002 6.7E-09 69.4 14.9 50 175-224 12-71 (257)
86 1r6b_X CLPA protein; AAA+, N-t 97.9 5.7E-05 2E-09 85.2 12.6 149 175-345 186-359 (758)
87 1qvr_A CLPB protein; coiled co 97.9 2.6E-05 8.9E-10 89.1 9.7 47 175-223 170-216 (854)
88 3g39_A Variable lymphocyte rec 97.9 2E-05 6.9E-10 71.3 6.9 62 520-582 29-96 (170)
89 2ifg_A High affinity nerve gro 97.9 1.2E-05 4.1E-10 81.6 6.0 62 515-577 50-116 (347)
90 1a9n_A U2A', U2A'; complex (nu 97.9 1.3E-05 4.5E-10 72.9 5.6 83 491-581 18-105 (176)
91 4b4t_H 26S protease regulatory 97.9 0.00026 9E-09 73.4 15.8 147 175-345 209-390 (467)
92 4g8a_A TOLL-like receptor 4; l 97.9 1.1E-05 3.7E-10 88.8 5.8 63 515-578 94-162 (635)
93 4b4t_L 26S protease subunit RP 97.9 0.00048 1.6E-08 71.5 17.7 147 175-345 181-362 (437)
94 2v70_A SLIT-2, SLIT homolog 2 97.8 2.3E-05 7.8E-10 74.2 7.2 66 515-581 51-122 (220)
95 1a5t_A Delta prime, HOLB; zinc 97.8 0.00018 6E-09 72.7 14.1 154 181-345 8-177 (334)
96 1sxj_C Activator 1 40 kDa subu 97.8 0.0006 2.1E-08 68.9 17.9 150 175-345 25-179 (340)
97 2r62_A Cell division protease 97.8 2.2E-05 7.6E-10 76.6 6.9 148 175-345 11-193 (268)
98 2o6s_A Variable lymphocyte rec 97.8 2.9E-05 9.8E-10 72.6 7.4 85 492-582 28-118 (208)
99 1p9a_G Platelet glycoprotein I 97.8 2.5E-05 8.5E-10 77.3 7.3 68 514-582 93-166 (290)
100 2bjv_A PSP operon transcriptio 97.8 6E-05 2E-09 73.4 9.9 49 175-223 6-54 (265)
101 2ce7_A Cell division protein F 97.8 0.00027 9.2E-09 74.5 15.4 148 175-345 16-196 (476)
102 3m19_A Variable lymphocyte rec 97.8 2.8E-05 9.7E-10 75.0 7.3 86 491-582 58-149 (251)
103 3rfs_A Internalin B, repeat mo 97.8 5.9E-05 2E-09 73.7 9.7 66 515-581 127-198 (272)
104 2xot_A Amphoterin-induced prot 97.8 3.9E-05 1.3E-09 78.4 8.7 64 516-580 83-152 (361)
105 1in4_A RUVB, holliday junction 97.8 0.0012 4E-08 66.6 19.5 50 175-224 25-77 (334)
106 4b4t_K 26S protease regulatory 97.8 0.00027 9.2E-09 73.2 14.7 53 174-226 171-234 (428)
107 1ogq_A PGIP-2, polygalacturona 97.8 8.9E-06 3.1E-10 81.5 3.5 68 514-582 94-168 (313)
108 3rfs_A Internalin B, repeat mo 97.8 6.5E-05 2.2E-09 73.4 9.7 86 491-582 84-175 (272)
109 4ezg_A Putative uncharacterize 97.8 2E-05 7E-10 73.0 5.7 64 515-580 106-175 (197)
110 3m19_A Variable lymphocyte rec 97.8 3.4E-05 1.2E-09 74.4 7.2 86 491-582 82-173 (251)
111 3pxi_A Negative regulator of g 97.8 0.0001 3.4E-09 83.2 12.1 143 175-345 180-335 (758)
112 4b4t_M 26S protease regulatory 97.8 0.00047 1.6E-08 71.5 16.1 148 174-345 180-362 (434)
113 1ogq_A PGIP-2, polygalacturona 97.8 1.1E-05 3.8E-10 80.8 3.5 68 513-581 117-192 (313)
114 4b4t_I 26S protease regulatory 97.7 0.00055 1.9E-08 70.3 15.8 148 174-345 181-363 (437)
115 1xku_A Decorin; proteoglycan, 97.7 4.5E-05 1.5E-09 76.8 7.7 67 515-582 210-281 (330)
116 1ojl_A Transcriptional regulat 97.7 0.00015 5.1E-09 72.2 11.3 48 175-222 2-49 (304)
117 2o6q_A Variable lymphocyte rec 97.7 0.00011 3.7E-09 71.7 10.1 66 515-581 103-174 (270)
118 3vq2_A TLR4, TOLL-like recepto 97.7 6.3E-05 2.1E-09 82.4 9.3 62 515-577 74-141 (606)
119 2wfh_A SLIT homolog 2 protein 97.7 0.00011 3.8E-09 67.9 8.9 80 491-576 53-138 (193)
120 2o6q_A Variable lymphocyte rec 97.7 5.9E-05 2E-09 73.6 7.3 67 515-582 127-199 (270)
121 1ds9_A Outer arm dynein; leuci 97.7 2.1E-06 7E-11 79.9 -3.2 63 516-580 65-131 (198)
122 3vq2_A TLR4, TOLL-like recepto 97.7 4.7E-05 1.6E-09 83.4 7.2 84 492-581 32-121 (606)
123 1ofh_A ATP-dependent HSL prote 97.7 7.4E-05 2.5E-09 74.3 7.9 50 174-223 14-75 (310)
124 4ezg_A Putative uncharacterize 97.6 4.3E-05 1.5E-09 70.8 5.3 65 515-580 82-153 (197)
125 3zyi_A Leucine-rich repeat-con 97.6 6E-05 2E-09 79.5 6.9 66 515-581 93-164 (452)
126 3o6n_A APL1; leucine-rich repe 97.6 5.5E-05 1.9E-09 78.0 6.4 66 515-581 87-158 (390)
127 2ft3_A Biglycan; proteoglycan, 97.6 4.7E-05 1.6E-09 76.7 5.7 66 515-581 211-281 (332)
128 2w58_A DNAI, primosome compone 97.6 0.00017 5.9E-09 66.9 9.2 59 175-233 25-89 (202)
129 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 5.4E-05 1.8E-09 82.3 6.4 64 515-580 70-137 (562)
130 1xeu_A Internalin C; cellular 97.6 4.7E-05 1.6E-09 74.1 5.0 81 491-580 40-122 (263)
131 1h6u_A Internalin H; cell adhe 97.6 0.00013 4.3E-09 72.9 8.2 63 516-580 102-167 (308)
132 2z80_A TOLL-like receptor 2, v 97.6 4.8E-05 1.6E-09 77.4 5.0 65 515-580 94-166 (353)
133 1w8a_A SLIT protein; signaling 97.6 0.00012 4.1E-09 67.5 7.3 60 522-582 30-96 (192)
134 3o53_A Protein LRIM1, AGAP0063 97.6 8E-05 2.7E-09 74.6 6.5 62 519-581 167-231 (317)
135 3oja_B Anopheles plasmodium-re 97.6 6.9E-05 2.3E-09 82.1 6.4 66 515-581 93-164 (597)
136 1ozn_A Reticulon 4 receptor; N 97.6 9.6E-05 3.3E-09 72.6 6.8 64 515-579 123-192 (285)
137 4g8a_A TOLL-like receptor 4; l 97.5 0.0001 3.6E-09 80.8 7.6 67 514-581 487-559 (635)
138 2z63_A TOLL-like receptor 4, v 97.5 0.00018 6.3E-09 77.9 9.4 62 515-577 70-137 (570)
139 3pxi_A Negative regulator of g 97.5 0.00034 1.2E-08 78.8 11.6 147 174-345 490-672 (758)
140 2id5_A Lingo-1, leucine rich r 97.5 0.0001 3.6E-09 78.1 6.9 64 515-579 50-119 (477)
141 3o6n_A APL1; leucine-rich repe 97.5 0.00013 4.4E-09 75.2 7.4 65 515-580 111-181 (390)
142 2z7x_B TOLL-like receptor 1, v 97.5 5.4E-05 1.9E-09 81.3 4.6 62 515-578 39-104 (520)
143 2z62_A TOLL-like receptor 4, v 97.5 0.00027 9.2E-09 69.0 9.1 65 515-580 94-165 (276)
144 1ozn_A Reticulon 4 receptor; N 97.5 0.00015 5.1E-09 71.2 7.2 86 491-582 55-147 (285)
145 1h6t_A Internalin B; cell adhe 97.5 0.00024 8.3E-09 70.1 8.7 61 517-579 130-193 (291)
146 3zyj_A Leucine-rich repeat-con 97.5 0.0001 3.5E-09 77.4 6.3 58 515-573 106-169 (440)
147 4eco_A Uncharacterized protein 97.5 6.4E-05 2.2E-09 83.0 4.8 68 513-581 239-322 (636)
148 2xot_A Amphoterin-induced prot 97.5 0.00011 3.9E-09 74.9 6.3 66 515-581 57-129 (361)
149 2z63_A TOLL-like receptor 4, v 97.5 0.0001 3.5E-09 79.9 6.3 84 492-581 28-117 (570)
150 4ecn_A Leucine-rich repeat pro 97.5 0.00013 4.4E-09 83.0 7.1 63 516-580 568-635 (876)
151 2o6r_A Variable lymphocyte rec 97.4 0.00018 6.1E-09 65.2 6.7 82 491-578 51-138 (177)
152 1h6u_A Internalin H; cell adhe 97.4 0.00028 9.5E-09 70.3 8.7 62 517-580 147-211 (308)
153 2xwt_C Thyrotropin receptor; s 97.4 0.00024 8.1E-09 67.8 7.9 66 515-582 99-174 (239)
154 1h6t_A Internalin B; cell adhe 97.4 0.00026 8.8E-09 70.0 8.3 82 490-580 88-172 (291)
155 3oja_B Anopheles plasmodium-re 97.4 0.00016 5.4E-09 79.2 7.3 84 491-580 98-187 (597)
156 3oja_A Leucine-rich immune mol 97.4 0.00013 4.6E-09 77.7 6.5 63 519-582 167-232 (487)
157 2ifg_A High affinity nerve gro 97.4 0.00017 5.9E-09 73.0 7.0 71 511-583 22-99 (347)
158 1ixz_A ATP-dependent metallopr 97.4 0.0041 1.4E-07 59.7 16.5 49 175-223 16-74 (254)
159 4eco_A Uncharacterized protein 97.4 0.00022 7.6E-09 78.7 8.2 63 519-582 511-584 (636)
160 2z66_A Variable lymphocyte rec 97.4 0.00022 7.4E-09 70.8 7.4 64 515-579 169-238 (306)
161 2z62_A TOLL-like receptor 4, v 97.4 0.00013 4.3E-09 71.4 5.6 64 517-581 120-194 (276)
162 3v47_A TOLL-like receptor 5B a 97.4 0.00013 4.4E-09 76.8 6.0 62 515-577 341-408 (455)
163 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0019 6.6E-08 68.4 14.7 172 174-372 30-246 (499)
164 1xeu_A Internalin C; cellular 97.4 0.00031 1.1E-08 68.2 8.1 57 521-579 106-165 (263)
165 2kjq_A DNAA-related protein; s 97.4 0.00013 4.4E-09 64.4 4.8 36 198-233 36-71 (149)
166 3v47_A TOLL-like receptor 5B a 97.4 0.00014 4.8E-09 76.5 6.0 64 515-579 73-144 (455)
167 1wwl_A Monocyte differentiatio 97.4 0.00015 5.3E-09 72.3 6.0 37 543-580 254-290 (312)
168 2z66_A Variable lymphocyte rec 97.4 0.00016 5.6E-09 71.7 6.1 66 515-581 144-216 (306)
169 2ft3_A Biglycan; proteoglycan, 97.4 0.00016 5.3E-09 72.9 6.0 61 515-578 96-161 (332)
170 3t6q_A CD180 antigen; protein- 97.4 0.00015 5.1E-09 79.4 6.1 64 515-579 75-144 (606)
171 2z81_A CD282 antigen, TOLL-lik 97.4 0.00011 3.7E-09 79.4 5.0 65 515-580 68-140 (549)
172 3rgz_A Protein brassinosteroid 97.4 0.00013 4.5E-09 82.4 5.6 68 514-582 649-723 (768)
173 4ecn_A Leucine-rich repeat pro 97.4 0.00028 9.6E-09 80.2 8.2 68 514-582 744-824 (876)
174 1xku_A Decorin; proteoglycan, 97.3 0.00024 8.2E-09 71.3 6.9 65 515-581 70-138 (330)
175 1ziw_A TOLL-like receptor 3; i 97.3 0.00018 6.2E-09 80.0 6.5 65 515-580 67-137 (680)
176 3j0a_A TOLL-like receptor 5; m 97.3 0.00013 4.5E-09 83.4 5.5 65 515-580 67-139 (844)
177 2z80_A TOLL-like receptor 2, v 97.3 0.00026 9E-09 71.8 7.3 62 517-579 120-189 (353)
178 1m9s_A Internalin B; cell inva 97.3 0.00034 1.2E-08 76.5 8.5 65 515-581 147-214 (605)
179 1eiw_A Hypothetical protein MT 97.3 0.00033 1.1E-08 57.8 6.2 73 16-113 2-74 (111)
180 2c9o_A RUVB-like 1; hexameric 97.3 0.00035 1.2E-08 73.7 8.1 68 158-225 20-90 (456)
181 1iy2_A ATP-dependent metallopr 97.3 0.0039 1.3E-07 60.9 15.1 50 174-223 39-98 (278)
182 4fmz_A Internalin; leucine ric 97.3 0.00021 7.2E-09 72.2 6.1 76 491-575 65-143 (347)
183 2xwt_C Thyrotropin receptor; s 97.3 0.00021 7.1E-09 68.2 5.7 64 517-581 123-197 (239)
184 3a79_B TLR6, VLRB.59, TOLL-lik 97.3 0.00034 1.2E-08 75.9 8.0 68 515-582 422-491 (562)
185 3t6q_A CD180 antigen; protein- 97.3 0.00025 8.6E-09 77.6 6.9 64 515-579 99-168 (606)
186 3cf2_A TER ATPase, transitiona 97.3 0.0027 9.2E-08 70.9 14.9 171 174-367 203-412 (806)
187 3rgz_A Protein brassinosteroid 97.3 0.00017 5.7E-09 81.5 5.4 68 514-582 625-699 (768)
188 3bz5_A Internalin-J, INLJ; leu 97.3 0.00038 1.3E-08 73.5 7.7 61 517-580 81-143 (457)
189 1o6v_A Internalin A; bacterial 97.3 0.00023 7.8E-09 75.3 5.9 62 517-580 86-150 (466)
190 1ds9_A Outer arm dynein; leuci 97.3 8.4E-06 2.9E-10 75.7 -4.8 66 513-579 85-155 (198)
191 1m9s_A Internalin B; cell inva 97.2 0.00047 1.6E-08 75.3 8.1 64 515-580 125-191 (605)
192 3zyi_A Leucine-rich repeat-con 97.2 0.00064 2.2E-08 71.5 8.9 17 515-531 141-157 (452)
193 4fmz_A Internalin; leucine ric 97.2 0.00058 2E-08 68.9 8.3 84 489-580 85-171 (347)
194 1ziw_A TOLL-like receptor 3; i 97.2 0.00029 9.8E-09 78.3 6.4 64 516-580 92-161 (680)
195 2z7x_B TOLL-like receptor 1, v 97.2 0.00036 1.2E-08 74.8 7.0 65 517-581 395-461 (520)
196 2z81_A CD282 antigen, TOLL-lik 97.2 0.00037 1.3E-08 75.2 6.9 61 517-579 383-446 (549)
197 1o6v_A Internalin A; bacterial 97.2 0.00024 8.2E-09 75.2 5.2 81 492-581 46-129 (466)
198 1r6b_X CLPA protein; AAA+, N-t 97.2 0.001 3.5E-08 74.9 10.6 50 174-223 457-513 (758)
199 1wwl_A Monocyte differentiatio 97.2 0.00035 1.2E-08 69.6 5.8 66 517-583 197-272 (312)
200 2x8a_A Nuclear valosin-contain 97.2 0.009 3.1E-07 58.2 15.7 147 175-345 10-188 (274)
201 3t15_A Ribulose bisphosphate c 97.2 0.0013 4.5E-08 64.9 9.7 28 198-225 36-63 (293)
202 4glp_A Monocyte differentiatio 97.1 0.00027 9.3E-09 70.4 4.4 64 517-581 220-289 (310)
203 3g06_A SSPH2 (leucine-rich rep 97.1 0.0011 3.9E-08 72.5 9.6 37 543-581 122-158 (622)
204 4glp_A Monocyte differentiatio 97.1 0.00014 4.8E-09 72.5 2.2 67 516-583 192-270 (310)
205 3bz5_A Internalin-J, INLJ; leu 97.1 0.00037 1.3E-08 73.6 5.5 80 491-580 41-122 (457)
206 1ypw_A Transitional endoplasmi 97.1 0.0032 1.1E-07 71.0 13.4 147 174-345 203-382 (806)
207 3zyj_A Leucine-rich repeat-con 97.1 0.00056 1.9E-08 71.7 6.4 63 517-580 203-271 (440)
208 3hr8_A Protein RECA; alpha and 97.0 0.0025 8.6E-08 64.3 10.6 98 184-290 46-149 (356)
209 2cvh_A DNA repair and recombin 97.0 0.0014 4.6E-08 61.4 8.2 45 186-233 8-52 (220)
210 1jl5_A Outer protein YOPM; leu 97.0 0.0011 3.8E-08 69.8 8.3 82 492-582 131-213 (454)
211 3oja_A Leucine-rich immune mol 97.0 0.00035 1.2E-08 74.5 4.4 85 492-582 120-209 (487)
212 3o53_A Protein LRIM1, AGAP0063 97.0 0.00047 1.6E-08 68.9 5.1 58 519-577 189-250 (317)
213 2id5_A Lingo-1, leucine rich r 97.0 0.00064 2.2E-08 72.0 6.2 61 521-582 32-98 (477)
214 3m6a_A ATP-dependent protease 97.0 0.0014 4.9E-08 70.5 8.4 52 174-225 80-135 (543)
215 3cvr_A Invasion plasmid antige 96.9 0.0016 5.4E-08 70.5 8.2 32 545-576 210-242 (571)
216 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0012 4.1E-08 65.2 6.4 71 198-291 123-193 (331)
217 3g06_A SSPH2 (leucine-rich rep 96.9 0.0014 4.9E-08 71.7 7.5 80 492-583 61-140 (622)
218 4ay9_X Follicle-stimulating ho 96.8 0.0017 6E-08 65.7 7.6 67 515-582 147-220 (350)
219 1qvr_A CLPB protein; coiled co 96.8 0.0039 1.3E-07 71.1 11.1 49 175-223 558-613 (854)
220 2qgz_A Helicase loader, putati 96.8 0.0022 7.6E-08 63.7 7.8 52 182-233 135-188 (308)
221 1g5t_A COB(I)alamin adenosyltr 96.7 0.004 1.4E-07 56.9 8.2 117 199-319 29-164 (196)
222 4ay9_X Follicle-stimulating ho 96.7 0.0016 5.6E-08 65.9 6.0 68 515-582 48-122 (350)
223 3cvr_A Invasion plasmid antige 96.7 0.003 1E-07 68.4 8.0 58 519-583 158-226 (571)
224 1jl5_A Outer protein YOPM; leu 96.6 0.0023 8E-08 67.3 6.8 64 516-581 190-254 (454)
225 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0029 9.8E-08 59.6 6.4 35 199-233 24-58 (235)
226 2ca6_A RAN GTPase-activating p 96.5 0.0004 1.4E-08 71.4 0.2 37 518-555 91-135 (386)
227 2zr9_A Protein RECA, recombina 96.4 0.0067 2.3E-07 61.3 8.5 96 184-289 46-148 (349)
228 2r44_A Uncharacterized protein 96.4 0.0048 1.6E-07 61.9 7.4 47 175-225 27-73 (331)
229 1v5w_A DMC1, meiotic recombina 96.4 0.011 3.6E-07 59.7 9.6 50 184-233 108-163 (343)
230 3bh0_A DNAB-like replicative h 96.4 0.022 7.4E-07 56.7 11.6 64 185-255 56-119 (315)
231 2ca6_A RAN GTPase-activating p 96.3 0.00087 3E-08 68.9 1.3 86 491-578 186-288 (386)
232 1n0w_A DNA repair protein RAD5 96.3 0.0079 2.7E-07 57.0 7.9 49 185-233 11-65 (243)
233 2ast_B S-phase kinase-associat 96.3 0.00051 1.7E-08 69.0 -0.7 59 515-574 136-205 (336)
234 1xp8_A RECA protein, recombina 96.3 0.012 4.2E-07 59.7 9.3 96 184-289 59-161 (366)
235 1u94_A RECA protein, recombina 96.2 0.0085 2.9E-07 60.6 8.0 50 184-233 48-98 (356)
236 3rw6_A Nuclear RNA export fact 96.2 0.0023 7.9E-08 62.0 3.5 58 518-577 167-233 (267)
237 3hws_A ATP-dependent CLP prote 96.1 0.0032 1.1E-07 64.2 4.0 49 175-223 15-76 (363)
238 3io5_A Recombination and repai 96.1 0.0078 2.7E-07 59.2 6.3 49 184-233 11-65 (333)
239 2z43_A DNA repair and recombin 96.0 0.0088 3E-07 59.8 6.9 49 185-233 94-148 (324)
240 1qhx_A CPT, protein (chloramph 96.0 0.0039 1.3E-07 56.2 3.5 25 199-223 4-28 (178)
241 2cbz_A Multidrug resistance-as 95.9 0.033 1.1E-06 52.9 10.0 23 199-221 32-54 (237)
242 1rz3_A Hypothetical protein rb 95.9 0.011 3.8E-07 54.6 6.5 44 180-223 3-47 (201)
243 1u0j_A DNA replication protein 95.9 0.049 1.7E-06 52.3 11.0 39 184-222 90-128 (267)
244 2eyu_A Twitching motility prot 95.9 0.026 8.9E-07 54.4 9.1 109 198-320 25-135 (261)
245 2b8t_A Thymidine kinase; deoxy 95.9 0.019 6.4E-07 53.9 7.8 111 198-319 12-127 (223)
246 1odf_A YGR205W, hypothetical 3 95.8 0.042 1.4E-06 53.8 10.6 30 195-224 28-57 (290)
247 3hyn_A Putative signal transdu 95.8 0.017 5.7E-07 51.2 6.7 84 26-115 27-118 (189)
248 3c8u_A Fructokinase; YP_612366 95.8 0.0069 2.4E-07 56.3 4.5 40 184-223 8-47 (208)
249 3kb2_A SPBC2 prophage-derived 95.8 0.0053 1.8E-07 54.8 3.6 25 199-223 2-26 (173)
250 3jvv_A Twitching mobility prot 95.8 0.011 3.8E-07 59.8 6.2 110 199-321 124-234 (356)
251 2i1q_A DNA repair and recombin 95.7 0.014 4.8E-07 58.2 6.8 38 184-221 84-121 (322)
252 1um8_A ATP-dependent CLP prote 95.7 0.008 2.7E-07 61.5 4.7 51 174-224 20-98 (376)
253 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0068 2.3E-07 64.2 4.1 45 175-223 22-66 (500)
254 3trf_A Shikimate kinase, SK; a 95.6 0.006 2.1E-07 55.3 3.2 25 199-223 6-30 (185)
255 2q6t_A DNAB replication FORK h 95.6 0.061 2.1E-06 56.2 11.3 67 184-257 187-254 (444)
256 1ypw_A Transitional endoplasmi 95.6 0.0042 1.5E-07 70.1 2.5 148 174-345 476-658 (806)
257 3cf2_A TER ATPase, transitiona 95.5 0.015 5.2E-07 64.9 6.6 147 175-345 477-658 (806)
258 3lw7_A Adenylate kinase relate 95.5 0.0069 2.4E-07 54.0 3.3 23 199-222 2-24 (179)
259 4a1f_A DNAB helicase, replicat 95.5 0.067 2.3E-06 53.4 10.7 64 185-255 34-97 (338)
260 3vaa_A Shikimate kinase, SK; s 95.5 0.0076 2.6E-07 55.5 3.5 25 199-223 26-50 (199)
261 3bgw_A DNAB-like replicative h 95.5 0.066 2.3E-06 55.8 11.0 69 179-254 179-247 (444)
262 3rfe_A Platelet glycoprotein I 95.5 0.022 7.5E-07 48.5 6.1 52 525-576 12-67 (130)
263 3tlx_A Adenylate kinase 2; str 95.3 0.015 5.3E-07 55.4 5.2 41 182-222 13-53 (243)
264 1nks_A Adenylate kinase; therm 95.3 0.016 5.4E-07 52.6 5.1 26 199-224 2-27 (194)
265 1ly1_A Polynucleotide kinase; 95.3 0.0098 3.4E-07 53.4 3.5 22 199-220 3-24 (181)
266 1z7x_W Ribonuclease inhibitor; 95.3 0.0024 8.4E-08 67.0 -0.7 63 515-577 50-126 (461)
267 2px0_A Flagellar biosynthesis 95.3 0.067 2.3E-06 52.5 9.7 26 198-223 105-130 (296)
268 1g8p_A Magnesium-chelatase 38 95.3 0.0097 3.3E-07 59.9 3.8 47 175-223 24-70 (350)
269 2rhm_A Putative kinase; P-loop 95.2 0.012 4.2E-07 53.5 4.0 25 198-222 5-29 (193)
270 2pze_A Cystic fibrosis transme 95.2 0.18 6.2E-06 47.3 12.3 24 199-222 35-58 (229)
271 1kag_A SKI, shikimate kinase I 95.2 0.0087 3E-07 53.5 2.8 25 199-223 5-29 (173)
272 1zuh_A Shikimate kinase; alpha 95.2 0.011 3.8E-07 52.6 3.5 26 198-223 7-32 (168)
273 1zp6_A Hypothetical protein AT 95.1 0.012 4E-07 53.6 3.5 24 198-221 9-32 (191)
274 3uie_A Adenylyl-sulfate kinase 95.1 0.018 6.1E-07 53.0 4.8 26 198-223 25-50 (200)
275 2r6a_A DNAB helicase, replicat 95.1 0.11 3.8E-06 54.3 11.5 50 198-253 203-253 (454)
276 3iij_A Coilin-interacting nucl 95.1 0.0084 2.9E-07 54.1 2.5 25 198-222 11-35 (180)
277 2ast_B S-phase kinase-associat 95.1 0.01 3.4E-07 59.3 3.3 36 516-552 242-282 (336)
278 1q57_A DNA primase/helicase; d 95.1 0.083 2.8E-06 56.1 10.6 54 198-257 242-296 (503)
279 1z7x_W Ribonuclease inhibitor; 95.0 0.0035 1.2E-07 65.8 -0.5 84 493-578 314-412 (461)
280 3kl4_A SRP54, signal recogniti 95.0 0.065 2.2E-06 55.4 9.1 35 198-232 97-131 (433)
281 4eun_A Thermoresistant glucoki 95.0 0.066 2.3E-06 49.1 8.4 25 198-222 29-53 (200)
282 2ewv_A Twitching motility prot 95.0 0.064 2.2E-06 54.6 9.0 110 198-320 136-246 (372)
283 2ze6_A Isopentenyl transferase 95.0 0.014 4.7E-07 56.1 3.8 25 199-223 2-26 (253)
284 1pzn_A RAD51, DNA repair and r 95.0 0.024 8.3E-07 57.2 5.7 38 185-222 118-155 (349)
285 1j8m_F SRP54, signal recogniti 95.0 0.19 6.4E-06 49.3 12.0 36 198-233 98-133 (297)
286 3t61_A Gluconokinase; PSI-biol 95.0 0.011 3.8E-07 54.4 2.9 24 199-222 19-42 (202)
287 1via_A Shikimate kinase; struc 95.0 0.012 4.2E-07 52.8 3.1 24 200-223 6-29 (175)
288 1vma_A Cell division protein F 95.0 0.07 2.4E-06 52.6 8.8 36 197-232 103-138 (306)
289 3e4g_A ATP synthase subunit S, 95.0 0.015 5.1E-07 52.3 3.6 83 490-577 59-153 (176)
290 2jaq_A Deoxyguanosine kinase; 95.0 0.013 4.6E-07 53.8 3.4 25 200-224 2-26 (205)
291 2ga8_A Hypothetical 39.9 kDa p 94.9 0.019 6.6E-07 57.5 4.6 48 179-226 3-52 (359)
292 1ex7_A Guanylate kinase; subst 94.9 0.0094 3.2E-07 54.3 2.2 28 199-226 2-29 (186)
293 1g41_A Heat shock protein HSLU 94.9 0.019 6.4E-07 59.6 4.6 52 174-225 14-77 (444)
294 1zu4_A FTSY; GTPase, signal re 94.9 0.2 6.8E-06 49.7 11.9 36 197-232 104-139 (320)
295 2yvu_A Probable adenylyl-sulfa 94.9 0.023 7.8E-07 51.5 4.7 27 198-224 13-39 (186)
296 3lda_A DNA repair protein RAD5 94.8 0.037 1.3E-06 56.8 6.7 38 183-220 163-200 (400)
297 3goz_A Leucine-rich repeat-con 94.8 0.0081 2.8E-07 61.0 1.7 57 521-577 80-151 (362)
298 1kht_A Adenylate kinase; phosp 94.8 0.014 4.8E-07 53.0 3.2 25 199-223 4-28 (192)
299 3cm0_A Adenylate kinase; ATP-b 94.8 0.019 6.4E-07 52.0 3.9 25 198-222 4-28 (186)
300 1knq_A Gluconate kinase; ALFA/ 94.8 0.017 5.9E-07 51.7 3.6 25 198-222 8-32 (175)
301 1tev_A UMP-CMP kinase; ploop, 94.8 0.017 5.7E-07 52.6 3.6 24 199-222 4-27 (196)
302 2iyv_A Shikimate kinase, SK; t 94.8 0.015 5.3E-07 52.5 3.3 24 200-223 4-27 (184)
303 2vli_A Antibiotic resistance p 94.8 0.012 4.2E-07 53.0 2.6 25 199-223 6-30 (183)
304 2c95_A Adenylate kinase 1; tra 94.8 0.017 5.8E-07 52.7 3.5 25 198-222 9-33 (196)
305 2plr_A DTMP kinase, probable t 94.7 0.029 9.8E-07 51.8 5.1 27 199-225 5-31 (213)
306 1tue_A Replication protein E1; 94.7 0.023 7.7E-07 52.3 4.1 41 183-224 44-84 (212)
307 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.066 2.2E-06 53.5 8.0 105 199-320 172-277 (330)
308 1ukz_A Uridylate kinase; trans 94.7 0.02 6.7E-07 52.7 3.8 26 197-222 14-39 (203)
309 2pt5_A Shikimate kinase, SK; a 94.7 0.018 6.1E-07 51.1 3.5 24 200-223 2-25 (168)
310 1kgd_A CASK, peripheral plasma 94.7 0.016 5.5E-07 52.4 3.1 25 199-223 6-30 (180)
311 2bwj_A Adenylate kinase 5; pho 94.7 0.018 6.2E-07 52.6 3.5 25 199-223 13-37 (199)
312 1qf9_A UMP/CMP kinase, protein 94.7 0.02 6.8E-07 52.0 3.8 26 198-223 6-31 (194)
313 1e6c_A Shikimate kinase; phosp 94.6 0.015 5E-07 52.0 2.7 25 199-223 3-27 (173)
314 3dm5_A SRP54, signal recogniti 94.6 0.15 5E-06 52.8 10.5 36 197-232 99-134 (443)
315 1uj2_A Uridine-cytidine kinase 94.6 0.02 6.7E-07 54.9 3.7 28 197-224 21-48 (252)
316 1uf9_A TT1252 protein; P-loop, 94.6 0.022 7.6E-07 52.2 3.8 25 197-221 7-31 (203)
317 1nlf_A Regulatory protein REPA 94.6 0.17 6E-06 49.0 10.5 25 199-223 31-55 (279)
318 1y63_A LMAJ004144AAA protein; 94.5 0.02 6.8E-07 51.9 3.4 24 198-221 10-33 (184)
319 2cdn_A Adenylate kinase; phosp 94.5 0.021 7.1E-07 52.5 3.5 26 198-223 20-45 (201)
320 2bdt_A BH3686; alpha-beta prot 94.5 0.021 7.3E-07 51.8 3.5 22 199-220 3-24 (189)
321 3tau_A Guanylate kinase, GMP k 94.5 0.021 7.1E-07 53.0 3.4 26 198-223 8-33 (208)
322 2pjz_A Hypothetical protein ST 94.5 0.13 4.6E-06 49.4 9.2 24 199-222 31-54 (263)
323 1aky_A Adenylate kinase; ATP:A 94.4 0.019 6.4E-07 53.7 3.1 25 199-223 5-29 (220)
324 2if2_A Dephospho-COA kinase; a 94.4 0.021 7.3E-07 52.5 3.4 21 200-220 3-23 (204)
325 2xxa_A Signal recognition part 94.4 0.23 7.7E-06 51.5 11.5 36 197-232 99-135 (433)
326 1gvn_B Zeta; postsegregational 94.4 0.033 1.1E-06 54.5 4.8 25 198-222 33-57 (287)
327 1xjc_A MOBB protein homolog; s 94.4 0.029 1E-06 50.0 4.0 28 198-225 4-31 (169)
328 3a00_A Guanylate kinase, GMP k 94.4 0.017 5.9E-07 52.5 2.6 28 199-226 2-29 (186)
329 1cke_A CK, MSSA, protein (cyti 94.4 0.022 7.5E-07 53.4 3.4 24 199-222 6-29 (227)
330 2qor_A Guanylate kinase; phosp 94.4 0.016 5.6E-07 53.5 2.4 26 198-223 12-37 (204)
331 1nn5_A Similar to deoxythymidy 94.4 0.031 1E-06 51.8 4.3 28 198-225 9-36 (215)
332 3e70_C DPA, signal recognition 94.4 0.25 8.6E-06 49.1 11.2 28 197-224 128-155 (328)
333 2qt1_A Nicotinamide riboside k 94.4 0.025 8.5E-07 52.3 3.7 25 198-222 21-45 (207)
334 2grj_A Dephospho-COA kinase; T 94.3 0.029 1E-06 51.3 4.0 26 197-222 11-36 (192)
335 3un9_A NLR family member X1; l 94.3 0.0052 1.8E-07 62.8 -1.2 85 492-578 155-253 (372)
336 2r2a_A Uncharacterized protein 94.3 0.066 2.3E-06 49.2 6.4 22 200-221 7-28 (199)
337 2dr3_A UPF0273 protein PH0284; 94.3 0.03 1E-06 53.0 4.3 35 199-233 24-58 (247)
338 3tr0_A Guanylate kinase, GMP k 94.3 0.023 7.8E-07 52.3 3.3 24 199-222 8-31 (205)
339 3ice_A Transcription terminati 94.3 0.044 1.5E-06 55.4 5.4 28 199-226 175-202 (422)
340 3asz_A Uridine kinase; cytidin 94.3 0.027 9.1E-07 52.2 3.7 26 198-223 6-31 (211)
341 3tqc_A Pantothenate kinase; bi 94.3 0.035 1.2E-06 55.1 4.7 46 178-223 70-117 (321)
342 1jjv_A Dephospho-COA kinase; P 94.3 0.024 8.2E-07 52.3 3.3 22 199-220 3-24 (206)
343 2pbr_A DTMP kinase, thymidylat 94.2 0.025 8.5E-07 51.4 3.4 24 200-223 2-25 (195)
344 4a74_A DNA repair and recombin 94.2 0.026 9E-07 52.8 3.6 37 185-221 12-48 (231)
345 3p32_A Probable GTPase RV1496/ 94.2 0.07 2.4E-06 53.9 6.9 40 185-224 66-105 (355)
346 1sky_E F1-ATPase, F1-ATP synth 94.2 0.049 1.7E-06 56.6 5.7 30 200-229 153-182 (473)
347 2wwf_A Thymidilate kinase, put 94.2 0.025 8.6E-07 52.3 3.3 27 198-224 10-36 (212)
348 2bbs_A Cystic fibrosis transme 94.2 0.31 1.1E-05 47.5 11.3 23 199-221 65-87 (290)
349 2j41_A Guanylate kinase; GMP, 94.2 0.025 8.6E-07 52.0 3.3 24 199-222 7-30 (207)
350 1zd8_A GTP:AMP phosphotransfer 94.1 0.027 9.4E-07 52.9 3.5 24 199-222 8-31 (227)
351 3cmu_A Protein RECA, recombina 94.1 0.042 1.4E-06 66.8 5.8 95 186-290 1414-1515(2050)
352 3k1j_A LON protease, ATP-depen 94.1 0.04 1.4E-06 60.0 5.2 47 175-225 41-87 (604)
353 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.027 9.3E-07 54.2 3.5 25 198-222 4-28 (260)
354 2wsm_A Hydrogenase expression/ 94.1 0.069 2.4E-06 49.6 6.2 42 182-225 16-57 (221)
355 3fb4_A Adenylate kinase; psych 94.1 0.028 9.7E-07 52.2 3.4 23 200-222 2-24 (216)
356 2z0h_A DTMP kinase, thymidylat 94.0 0.063 2.2E-06 48.8 5.7 24 200-223 2-25 (197)
357 3umf_A Adenylate kinase; rossm 94.0 0.034 1.2E-06 51.9 3.8 26 197-222 28-53 (217)
358 2hf9_A Probable hydrogenase ni 94.0 0.045 1.5E-06 51.1 4.8 40 183-224 25-64 (226)
359 1ls1_A Signal recognition part 94.0 0.17 5.8E-06 49.6 9.0 35 198-232 98-132 (295)
360 2bbw_A Adenylate kinase 4, AK4 94.0 0.03 1E-06 53.4 3.4 26 198-223 27-52 (246)
361 3ney_A 55 kDa erythrocyte memb 94.0 0.028 9.7E-07 51.5 3.1 26 198-223 19-44 (197)
362 4e22_A Cytidylate kinase; P-lo 93.9 0.03 1E-06 53.7 3.4 26 198-223 27-52 (252)
363 3fwy_A Light-independent proto 93.9 0.044 1.5E-06 54.3 4.7 37 197-233 47-83 (314)
364 1ye8_A Protein THEP1, hypothet 93.9 0.03 1E-06 50.6 3.1 24 200-223 2-25 (178)
365 3dl0_A Adenylate kinase; phosp 93.9 0.032 1.1E-06 51.8 3.5 23 200-222 2-24 (216)
366 4gp7_A Metallophosphoesterase; 93.9 0.028 9.7E-07 50.3 2.9 22 198-219 9-30 (171)
367 2pez_A Bifunctional 3'-phospho 93.8 0.035 1.2E-06 49.9 3.5 25 198-222 5-29 (179)
368 2p5t_B PEZT; postsegregational 93.8 0.05 1.7E-06 52.1 4.8 26 198-223 32-57 (253)
369 2j37_W Signal recognition part 93.8 0.38 1.3E-05 50.7 11.9 29 197-225 100-128 (504)
370 1zak_A Adenylate kinase; ATP:A 93.8 0.032 1.1E-06 52.2 3.3 25 199-223 6-30 (222)
371 3goz_A Leucine-rich repeat-con 93.8 0.012 3.9E-07 59.8 0.1 87 492-580 22-125 (362)
372 3ake_A Cytidylate kinase; CMP 93.8 0.036 1.2E-06 51.0 3.5 24 200-223 4-27 (208)
373 2ffh_A Protein (FFH); SRP54, s 93.7 0.27 9.2E-06 50.7 10.3 35 198-232 98-132 (425)
374 1gtv_A TMK, thymidylate kinase 93.7 0.026 9E-07 52.2 2.5 24 200-223 2-25 (214)
375 3nwj_A ATSK2; P loop, shikimat 93.7 0.03 1E-06 53.6 2.8 25 199-223 49-73 (250)
376 2v54_A DTMP kinase, thymidylat 93.6 0.037 1.3E-06 50.8 3.2 24 199-222 5-28 (204)
377 3be4_A Adenylate kinase; malar 93.6 0.035 1.2E-06 51.8 3.0 24 199-222 6-29 (217)
378 1io0_A Tropomodulin; LRR prote 93.6 0.011 3.9E-07 53.7 -0.4 61 515-576 87-163 (185)
379 1puj_A YLQF, conserved hypothe 93.5 0.69 2.3E-05 44.9 12.4 122 61-220 12-142 (282)
380 3e1s_A Exodeoxyribonuclease V, 93.5 0.37 1.3E-05 51.9 11.3 27 199-225 205-231 (574)
381 1lvg_A Guanylate kinase, GMP k 93.5 0.029 1E-06 51.6 2.3 24 199-222 5-28 (198)
382 2f6r_A COA synthase, bifunctio 93.5 0.045 1.6E-06 53.3 3.8 24 197-220 74-97 (281)
383 3a8t_A Adenylate isopentenyltr 93.5 0.038 1.3E-06 55.0 3.2 26 198-223 40-65 (339)
384 2zts_A Putative uncharacterize 93.5 0.043 1.5E-06 52.0 3.6 36 198-233 30-66 (251)
385 3gd7_A Fusion complex of cysti 93.4 0.4 1.4E-05 48.9 10.9 22 199-220 48-69 (390)
386 1m7g_A Adenylylsulfate kinase; 93.4 0.046 1.6E-06 50.6 3.6 26 198-223 25-50 (211)
387 3r20_A Cytidylate kinase; stru 93.4 0.043 1.5E-06 51.8 3.4 25 199-223 10-34 (233)
388 2jeo_A Uridine-cytidine kinase 93.4 0.046 1.6E-06 52.1 3.6 25 198-222 25-49 (245)
389 3d3q_A TRNA delta(2)-isopenten 93.3 0.047 1.6E-06 54.4 3.7 25 199-223 8-32 (340)
390 1e4v_A Adenylate kinase; trans 93.3 0.05 1.7E-06 50.5 3.7 23 200-222 2-24 (214)
391 3aez_A Pantothenate kinase; tr 93.3 0.046 1.6E-06 54.2 3.6 27 197-223 89-115 (312)
392 3crm_A TRNA delta(2)-isopenten 93.3 0.045 1.6E-06 54.2 3.5 25 199-223 6-30 (323)
393 1jr3_D DNA polymerase III, del 93.3 1.1 3.8E-05 44.6 13.9 124 197-345 17-152 (343)
394 1znw_A Guanylate kinase, GMP k 93.3 0.043 1.5E-06 50.7 3.1 24 199-222 21-44 (207)
395 1ak2_A Adenylate kinase isoenz 93.2 0.048 1.6E-06 51.4 3.4 25 199-223 17-41 (233)
396 1vht_A Dephospho-COA kinase; s 93.2 0.051 1.8E-06 50.6 3.5 23 198-220 4-26 (218)
397 2ehv_A Hypothetical protein PH 93.1 0.065 2.2E-06 50.8 4.1 35 199-233 31-66 (251)
398 1rj9_A FTSY, signal recognitio 93.0 0.065 2.2E-06 52.8 4.2 27 198-224 102-128 (304)
399 2ra8_A Uncharacterized protein 93.0 0.018 6.2E-07 58.4 0.1 58 519-577 250-320 (362)
400 2xb4_A Adenylate kinase; ATP-b 93.0 0.054 1.8E-06 50.8 3.4 23 200-222 2-24 (223)
401 1htw_A HI0065; nucleotide-bind 93.0 0.058 2E-06 47.6 3.4 25 198-222 33-57 (158)
402 1z6g_A Guanylate kinase; struc 92.8 0.044 1.5E-06 51.2 2.5 24 199-222 24-47 (218)
403 3cmu_A Protein RECA, recombina 92.8 0.35 1.2E-05 59.0 10.5 100 181-290 365-471 (2050)
404 3sr0_A Adenylate kinase; phosp 92.8 0.064 2.2E-06 49.6 3.4 86 200-298 2-93 (206)
405 3exa_A TRNA delta(2)-isopenten 92.7 0.064 2.2E-06 52.7 3.6 24 199-222 4-27 (322)
406 2qmh_A HPR kinase/phosphorylas 92.7 0.059 2E-06 49.2 3.0 24 199-222 35-58 (205)
407 3sb4_A Hypothetical leucine ri 92.7 0.12 4E-06 51.5 5.5 39 543-582 227-267 (329)
408 2ck3_D ATP synthase subunit be 92.7 0.28 9.5E-06 50.9 8.4 52 199-253 154-206 (482)
409 2f1r_A Molybdopterin-guanine d 92.6 0.045 1.5E-06 49.0 2.1 26 199-224 3-28 (171)
410 1cr0_A DNA primase/helicase; R 92.6 0.092 3.2E-06 51.4 4.6 35 199-233 36-71 (296)
411 1a7j_A Phosphoribulokinase; tr 92.6 0.034 1.2E-06 54.5 1.4 26 198-223 5-30 (290)
412 1sq5_A Pantothenate kinase; P- 92.6 0.074 2.5E-06 52.6 3.8 27 197-223 79-105 (308)
413 3b9q_A Chloroplast SRP recepto 92.6 0.094 3.2E-06 51.6 4.6 26 198-223 100-125 (302)
414 3foz_A TRNA delta(2)-isopenten 92.6 0.078 2.7E-06 52.0 3.9 25 198-222 10-34 (316)
415 1s96_A Guanylate kinase, GMP k 92.5 0.063 2.2E-06 50.2 3.1 26 198-223 16-41 (219)
416 1ltq_A Polynucleotide kinase; 92.5 0.069 2.4E-06 52.4 3.5 23 199-221 3-25 (301)
417 1yrb_A ATP(GTP)binding protein 92.4 0.12 4.1E-06 49.4 5.0 26 198-223 14-39 (262)
418 2r8r_A Sensor protein; KDPD, P 92.3 0.13 4.4E-06 48.0 4.9 34 199-232 7-40 (228)
419 1g8f_A Sulfate adenylyltransfe 92.3 0.093 3.2E-06 55.4 4.4 49 176-224 373-421 (511)
420 4dzz_A Plasmid partitioning pr 92.3 0.19 6.4E-06 45.9 6.1 35 199-233 2-37 (206)
421 3lnc_A Guanylate kinase, GMP k 92.3 0.047 1.6E-06 51.4 1.9 24 199-222 28-52 (231)
422 2j9r_A Thymidine kinase; TK1, 92.3 0.27 9.2E-06 45.4 7.0 109 198-319 28-139 (214)
423 3sb4_A Hypothetical leucine ri 92.2 0.16 5.6E-06 50.4 6.0 66 515-582 244-315 (329)
424 4hlc_A DTMP kinase, thymidylat 92.2 0.37 1.3E-05 44.4 7.9 29 199-227 3-31 (205)
425 4eaq_A DTMP kinase, thymidylat 92.2 0.16 5.4E-06 47.8 5.5 27 198-224 26-52 (229)
426 2i3b_A HCR-ntpase, human cance 92.2 0.064 2.2E-06 48.9 2.7 23 200-222 3-25 (189)
427 1cp2_A CP2, nitrogenase iron p 92.2 0.13 4.5E-06 49.4 5.1 35 199-233 2-36 (269)
428 3l0o_A Transcription terminati 92.2 0.27 9.2E-06 49.6 7.3 28 199-226 176-203 (427)
429 1tf7_A KAIC; homohexamer, hexa 92.2 0.21 7.3E-06 53.3 7.1 39 186-224 269-307 (525)
430 3ogk_B Coronatine-insensitive 92.2 0.013 4.5E-07 63.5 -2.5 57 516-573 187-252 (592)
431 3cmw_A Protein RECA, recombina 92.2 0.12 4E-06 62.2 5.5 97 184-290 368-471 (1706)
432 2orw_A Thymidine kinase; TMTK, 92.1 0.13 4.3E-06 46.7 4.5 25 199-223 4-28 (184)
433 1np6_A Molybdopterin-guanine d 92.1 0.11 3.8E-06 46.5 4.1 26 198-223 6-31 (174)
434 1q3t_A Cytidylate kinase; nucl 92.1 0.08 2.7E-06 50.0 3.3 25 198-222 16-40 (236)
435 1svm_A Large T antigen; AAA+ f 92.0 0.13 4.4E-06 52.2 4.9 26 197-222 168-193 (377)
436 3end_A Light-independent proto 92.0 0.12 4.2E-06 50.8 4.7 37 197-233 40-76 (307)
437 3zvl_A Bifunctional polynucleo 91.9 0.069 2.4E-06 55.3 2.8 26 197-222 257-282 (416)
438 1ny5_A Transcriptional regulat 91.8 0.52 1.8E-05 48.0 9.3 47 176-222 138-184 (387)
439 3fdi_A Uncharacterized protein 91.8 0.11 3.7E-06 47.8 3.7 27 199-225 7-33 (201)
440 3un9_A NLR family member X1; l 91.8 0.025 8.4E-07 57.7 -0.8 59 519-578 153-225 (372)
441 2pcj_A ABC transporter, lipopr 91.8 0.078 2.7E-06 49.7 2.8 22 199-220 31-52 (224)
442 2og2_A Putative signal recogni 91.7 0.13 4.4E-06 51.9 4.5 26 198-223 157-182 (359)
443 1oix_A RAS-related protein RAB 91.7 0.1 3.5E-06 47.3 3.4 24 198-221 29-52 (191)
444 2onk_A Molybdate/tungstate ABC 91.7 0.09 3.1E-06 49.9 3.1 23 199-221 25-47 (240)
445 3b85_A Phosphate starvation-in 91.7 0.075 2.6E-06 49.2 2.5 23 199-221 23-45 (208)
446 3tif_A Uncharacterized ABC tra 91.6 0.078 2.7E-06 50.1 2.6 22 199-220 32-53 (235)
447 4edh_A DTMP kinase, thymidylat 91.6 0.27 9.3E-06 45.6 6.3 28 198-225 6-33 (213)
448 2p67_A LAO/AO transport system 91.6 0.25 8.5E-06 49.5 6.5 28 196-223 54-81 (341)
449 3e4g_A ATP synthase subunit S, 91.5 0.06 2.1E-06 48.3 1.6 56 521-577 61-128 (176)
450 3hjn_A DTMP kinase, thymidylat 91.5 0.35 1.2E-05 44.2 6.9 33 200-232 2-34 (197)
451 3b5x_A Lipid A export ATP-bind 91.5 0.5 1.7E-05 51.1 9.2 23 199-221 370-392 (582)
452 3cr8_A Sulfate adenylyltranfer 91.5 0.14 4.7E-06 54.8 4.7 27 198-224 369-395 (552)
453 2afh_E Nitrogenase iron protei 91.5 0.16 5.5E-06 49.5 4.8 35 199-233 3-37 (289)
454 2ocp_A DGK, deoxyguanosine kin 91.5 0.12 4.1E-06 48.9 3.8 25 199-223 3-27 (241)
455 2fz4_A DNA repair protein RAD2 91.4 1.5 5.3E-05 41.0 11.6 38 180-222 95-132 (237)
456 3vkw_A Replicase large subunit 91.4 1.1 3.6E-05 46.3 11.0 25 196-220 159-183 (446)
457 3cmw_A Protein RECA, recombina 91.4 0.31 1.1E-05 58.6 7.9 95 186-289 1418-1518(1706)
458 2rcn_A Probable GTPase ENGC; Y 91.4 1.3 4.5E-05 44.3 11.5 24 199-222 216-239 (358)
459 3eph_A TRNA isopentenyltransfe 91.4 0.12 4.2E-06 52.6 3.8 25 199-223 3-27 (409)
460 3llm_A ATP-dependent RNA helic 91.4 0.47 1.6E-05 44.5 7.8 21 199-219 77-97 (235)
461 1io0_A Tropomodulin; LRR prote 91.3 0.044 1.5E-06 49.7 0.5 86 491-577 35-136 (185)
462 3cnl_A YLQF, putative uncharac 91.3 0.22 7.5E-06 47.8 5.4 112 61-220 10-121 (262)
463 1fx0_B ATP synthase beta chain 91.3 0.54 1.9E-05 49.0 8.6 52 199-253 166-218 (498)
464 1tq4_A IIGP1, interferon-induc 91.2 0.13 4.5E-06 52.8 4.0 35 186-220 57-91 (413)
465 2dyk_A GTP-binding protein; GT 91.2 0.13 4.5E-06 44.6 3.5 23 199-221 2-24 (161)
466 2h92_A Cytidylate kinase; ross 91.2 0.1 3.4E-06 48.5 2.8 24 199-222 4-27 (219)
467 2wji_A Ferrous iron transport 91.2 0.13 4.3E-06 45.3 3.4 22 199-220 4-25 (165)
468 3kjh_A CO dehydrogenase/acetyl 91.1 0.21 7.1E-06 47.2 5.1 33 201-233 3-35 (254)
469 2yhs_A FTSY, cell division pro 91.1 0.16 5.3E-06 53.3 4.4 34 198-232 293-326 (503)
470 2axn_A 6-phosphofructo-2-kinas 91.1 0.17 5.8E-06 53.9 4.8 29 198-226 35-63 (520)
471 2d2e_A SUFC protein; ABC-ATPas 91.1 0.11 3.8E-06 49.6 3.1 23 199-221 30-52 (250)
472 3zq6_A Putative arsenical pump 91.1 0.22 7.6E-06 49.5 5.4 36 198-233 14-49 (324)
473 3geh_A MNME, tRNA modification 91.0 1.3 4.5E-05 46.1 11.5 22 200-221 226-247 (462)
474 3gfo_A Cobalt import ATP-bindi 91.0 0.096 3.3E-06 50.8 2.6 22 199-220 35-56 (275)
475 1b0u_A Histidine permease; ABC 91.0 0.097 3.3E-06 50.4 2.6 23 199-221 33-55 (262)
476 2f9l_A RAB11B, member RAS onco 91.0 0.11 3.9E-06 47.3 3.0 24 198-221 5-28 (199)
477 2zu0_C Probable ATP-dependent 90.9 0.12 4E-06 49.9 3.1 23 199-221 47-69 (267)
478 3tqf_A HPR(Ser) kinase; transf 90.9 0.16 5.6E-06 45.1 3.7 23 199-221 17-39 (181)
479 4g1u_C Hemin import ATP-bindin 90.9 0.1 3.5E-06 50.4 2.6 23 199-221 38-60 (266)
480 2ce2_X GTPase HRAS; signaling 90.9 0.13 4.5E-06 44.6 3.2 22 200-221 5-26 (166)
481 1ji0_A ABC transporter; ATP bi 90.8 0.1 3.6E-06 49.4 2.6 22 199-220 33-54 (240)
482 2zej_A Dardarin, leucine-rich 90.8 0.097 3.3E-06 47.0 2.3 21 200-220 4-24 (184)
483 3ug7_A Arsenical pump-driving 90.8 0.34 1.2E-05 48.6 6.6 38 196-233 24-61 (349)
484 1g6h_A High-affinity branched- 90.8 0.1 3.6E-06 50.0 2.6 22 199-220 34-55 (257)
485 2olj_A Amino acid ABC transpor 90.7 0.11 3.7E-06 50.1 2.6 23 199-221 51-73 (263)
486 1mv5_A LMRA, multidrug resista 90.7 0.12 4E-06 49.2 2.8 23 198-220 28-50 (243)
487 2ff7_A Alpha-hemolysin translo 90.7 0.11 3.7E-06 49.5 2.6 23 199-221 36-58 (247)
488 2v9p_A Replication protein E1; 90.7 0.13 4.6E-06 50.4 3.3 25 198-222 126-150 (305)
489 2v3c_C SRP54, signal recogniti 90.7 0.093 3.2E-06 54.4 2.2 35 198-232 99-133 (432)
490 1z2a_A RAS-related protein RAB 90.6 0.18 6E-06 44.0 3.8 24 198-221 5-28 (168)
491 1sgw_A Putative ABC transporte 90.6 0.095 3.3E-06 48.8 2.0 23 199-221 36-58 (214)
492 1vpl_A ABC transporter, ATP-bi 90.4 0.12 4E-06 49.6 2.6 22 199-220 42-63 (256)
493 3gmt_A Adenylate kinase; ssgci 90.4 0.15 5.1E-06 47.8 3.2 24 199-222 9-32 (230)
494 2ghi_A Transport protein; mult 90.4 0.12 4E-06 49.7 2.6 24 199-222 47-70 (260)
495 3io3_A DEHA2D07832P; chaperone 90.4 0.24 8.2E-06 49.7 4.9 37 197-233 17-55 (348)
496 2gks_A Bifunctional SAT/APS ki 90.4 0.27 9.4E-06 52.5 5.7 46 178-223 352-397 (546)
497 2wjg_A FEOB, ferrous iron tran 90.3 0.17 5.8E-06 45.3 3.5 23 198-220 7-29 (188)
498 3iqw_A Tail-anchored protein t 90.3 0.29 1E-05 48.8 5.5 37 197-233 15-51 (334)
499 2ixe_A Antigen peptide transpo 90.3 0.12 4.2E-06 49.9 2.6 22 199-220 46-67 (271)
500 2qi9_C Vitamin B12 import ATP- 90.3 0.12 4.3E-06 49.2 2.6 26 199-224 27-52 (249)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-42 Score=319.01 Aligned_cols=157 Identities=41% Similarity=0.801 Sum_probs=141.9
Q ss_pred CCCCCCCceeeEEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchh
Q 035646 10 VPYPLPHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTW 89 (584)
Q Consensus 10 ~~~~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~ 89 (584)
++.+.+.++|||||||+|+|+|++|++||+.+|+++||++|+|++++++|+.|.++|.+||++|+++|+|||++|++|+|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 33457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcEEEeeeeccCcchhhcccchHHHHHHhHHHhhhhhHHHHHHHHHHHHHHhhcccCcccCCC
Q 035646 90 CLDELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYEEVFSENIEKVQKWRDALREVANISGWELKDMN 168 (584)
Q Consensus 90 c~~El~~~~~~~~~~~~~~v~Pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 168 (584)
|++||++|++|...++.++|+||||+|+|++||+|+|.|+++|.+|+.++.. +++++|+.||.++++++||++....
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~~ 183 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKND 183 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCCC
Confidence 9999999999987543289999999999999999999999999999988754 6899999999999999999987654
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-42 Score=313.34 Aligned_cols=157 Identities=47% Similarity=0.739 Sum_probs=129.9
Q ss_pred CCCCceeeEEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhHH
Q 035646 13 PLPHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCLD 92 (584)
Q Consensus 13 ~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~ 92 (584)
++.+++|||||||+|+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|||++|++|+||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEeeeeccCcchhhcccchHHHHHHhHHHhhhhhHHHHHHHHHHHHHHhhcccCcccCCCcccc
Q 035646 93 ELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYEEVFSENIEKVQKWRDALREVANISGWELKDMNESEF 172 (584)
Q Consensus 93 El~~~~~~~~~~~~~~v~Pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 172 (584)
||++|++|.+.++ .+|+||||+|+|++||+|+|+|+++|.+|+.+ ...+++++|+.||+++++++|+++. .+|+++
T Consensus 83 EL~~i~~~~~~~~-~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e~~~ 158 (176)
T 3jrn_A 83 ELVTIMDFEKKGS-ITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDDSKL 158 (176)
T ss_dssp HHHHHHHHHHTTS-CEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCHHHH
T ss_pred HHHHHHhhhccCC-CEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-CCHHHH
Confidence 9999999998777 89999999999999999999999999999987 4457899999999999999999873 444444
Q ss_pred c
Q 035646 173 I 173 (584)
Q Consensus 173 i 173 (584)
|
T Consensus 159 i 159 (176)
T 3jrn_A 159 V 159 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-39 Score=355.32 Aligned_cols=275 Identities=16% Similarity=0.116 Sum_probs=218.6
Q ss_pred ccchhhHHHHHHHhhhc-CCceEEEEEEecCCccHHHHHHHHHh----hhcccccceEEEEechhhccc--CChHHHHHH
Q 035646 178 VGIDSHLKNLRLLMDKE-CNVVCMIGICVMGGIGKTTLAGVVYD----LTSHNFEASSCLANVREISEE--GGLTSLQNQ 250 (584)
Q Consensus 178 vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~w~~~~~~~s~~--~~~~~~~~~ 250 (584)
|||+.++++|.++|..+ .+..++|+|+||||+||||||+++|+ +++.+|+.++|+. ++.. .+...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 59999999999999755 33579999999999999999999996 6888999999996 4544 378899999
Q ss_pred HHHHHhCCCC-CC-----CcChhhhHHHHHHHHcCC-CcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhc
Q 035646 251 LLSQLLKLPN-NG-----IWNVYDGINIIGRRLRHK-KVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMM 323 (584)
Q Consensus 251 i~~~l~~~~~-~~-----~~~~~~~~~~l~~~L~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 323 (584)
++.++..... .. ..+.......+++.|+++ |+||||||||+.+++ .+.. .+||+||||||+..++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9999865422 11 123344578899999996 999999999998876 2222 279999999999999887
Q ss_pred cc-cceEeecCCCCHHHHHHHhc------------------------CCchhHHHhhhhhhCCCHHHHHHHHHH-Hhhcc
Q 035646 324 HG-VDEIYNLRELHDDKALQLFC------------------------GLPLALKVLGSFLYGKTTKEWESALKR-LKRES 377 (584)
Q Consensus 324 ~~-~~~~~~l~~L~~~ea~~Lf~------------------------G~PLal~~~~~~L~~~~~~~w~~~l~~-l~~~~ 377 (584)
++ ...+|+|++|+.+||++||. |+||||+++|+.++.+. .+|...+.. +....
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG 359 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc
Confidence 75 44689999999999999997 99999999999998774 333333332 22223
Q ss_pred hhhHHHHHHHhhhCCchhHHHHHh-----------hhccccccCChhhHHHhhhcC--CCch-----------hhhHHHH
Q 035646 378 ENEILDILKISFDGLRETEKKIFL-----------DIACFYQGENRDYVTKILDYC--DFDP-----------VIGIRVL 433 (584)
Q Consensus 378 ~~~i~~~l~~s~~~L~~~~k~~fl-----------~la~fp~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L 433 (584)
...+..++..||+.||++.+.||+ +||+||++++.+ +.+|.++ |+.. ..++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 456777788888888888888888 999999998877 7788887 5542 2479999
Q ss_pred hhccceeEecC---CeEEecHHHHHHHHHHHhhhC
Q 035646 434 IDKSLIEISTD---SRFWMHDLLKEICQQIVKRQS 465 (584)
Q Consensus 434 ~~~sLi~~~~~---~~~~mH~lv~~~a~~i~~~~~ 465 (584)
+++||++.... ++|+|||+||++|++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999997643 469999999999998887654
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.6e-35 Score=352.83 Aligned_cols=281 Identities=20% Similarity=0.282 Sum_probs=228.2
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh---hcccccceE-EEEechhhcccCChHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL---TSHNFEASS-CLANVREISEEGGLTSLQN 249 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~-w~~~~~~~s~~~~~~~~~~ 249 (584)
++.||||++++++|.++|...+++.++|+|+||||+||||||+++|++ ...+|...+ |+. +... ........+.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~-~~~~~~~~~~ 200 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQ-DKSGLLMKLQ 200 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSC-CHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCc-CchHHHHHHH
Confidence 467999999999999999766667899999999999999999999986 355676665 554 3211 1223344456
Q ss_pred HHHHHHhCCCC---CCCcChhhhHHHHHHHHcCC--CcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchhhc-
Q 035646 250 QLLSQLLKLPN---NGIWNVYDGINIIGRRLRHK--KVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLLMM- 323 (584)
Q Consensus 250 ~i~~~l~~~~~---~~~~~~~~~~~~l~~~L~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~- 323 (584)
.++..+..... ....+.+.....++..+.++ |+||||||||+.++++.+ ++||+||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 66666544322 12345566777788888776 999999999998876553 679999999999998844
Q ss_pred cccceEeecCC-CCHHHHHHHhc----------------------CCchhHHHhhhhhhCCCHHHHHHHHHHHhhcc---
Q 035646 324 HGVDEIYNLRE-LHDDKALQLFC----------------------GLPLALKVLGSFLYGKTTKEWESALKRLKRES--- 377 (584)
Q Consensus 324 ~~~~~~~~l~~-L~~~ea~~Lf~----------------------G~PLal~~~~~~L~~~~~~~w~~~l~~l~~~~--- 377 (584)
.+....+++.+ |+.+||++||. |+||||+++|++|+.+. ..|...++.+....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCC
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhh
Confidence 45667889996 99999999997 99999999999998866 57999998886532
Q ss_pred --------hhhHHHHHHHhhhCCchhHHHHHhhhccccccC--ChhhHHHhhhcCCCchhhhHHHHhhccceeEecCCe-
Q 035646 378 --------ENEILDILKISFDGLRETEKKIFLDIACFYQGE--NRDYVTKILDYCDFDPVIGIRVLIDKSLIEISTDSR- 446 (584)
Q Consensus 378 --------~~~i~~~l~~s~~~L~~~~k~~fl~la~fp~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~- 446 (584)
.+.+..++..||+.|++++|.||++||+||.++ +.+.++.+|.+++...+.++++|+++|||+...++.
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~ 432 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKS 432 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSS
T ss_pred cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCc
Confidence 256999999999999999999999999999886 578899999988888899999999999999887664
Q ss_pred --EEecHHHHHHHHHHHhhh
Q 035646 447 --FWMHDLLKEICQQIVKRQ 464 (584)
Q Consensus 447 --~~mH~lv~~~a~~i~~~~ 464 (584)
|+||++||+++++.+.++
T Consensus 433 ~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 433 FCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEECCHHHHHHHHHHTGGG
T ss_pred eEEEecHHHHHHHHhhhhHH
Confidence 999999999999886654
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.5e-35 Score=324.22 Aligned_cols=263 Identities=17% Similarity=0.153 Sum_probs=210.3
Q ss_pred ccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHh--hhcccccc-eEEEEechhhcccCChHHHHHHHH
Q 035646 176 HLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYD--LTSHNFEA-SSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..|||++++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+. ++|+. +++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHH
Confidence 3499999999999999853 3478999999999999999999997 46788997 67776 566667777777766
Q ss_pred HHHhCCC---CCC-------CcChhhhHHHHHHHH---cCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 253 SQLLKLP---NNG-------IWNVYDGINIIGRRL---RHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 253 ~~l~~~~---~~~-------~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
..+.... ... ..+.+.....+++.| .++|+||||||||+.++|+.+. +||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 6432111 100 112334456667666 6799999999999999988752 6899999999998
Q ss_pred hhhccccceEeecC------CCCHHHHHHHhc----------------CCchhHHHhhhhhhCC--CHHHHHHHHHHHhh
Q 035646 320 LLMMHGVDEIYNLR------ELHDDKALQLFC----------------GLPLALKVLGSFLYGK--TTKEWESALKRLKR 375 (584)
Q Consensus 320 v~~~~~~~~~~~l~------~L~~~ea~~Lf~----------------G~PLal~~~~~~L~~~--~~~~w~~~l~~l~~ 375 (584)
++..+.....|.|+ +|+.+||++||+ |+||||+++|+.|+.+ +...|...
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 87644433456666 899999999996 9999999999999986 67788653
Q ss_pred cchhhHHHHHHHhhhCCchhH-HHHHhhhccccccCC--hhhHHHhhhcCCC-chhhhHHHHhhccceeEec-CCeEEec
Q 035646 376 ESENEILDILKISFDGLRETE-KKIFLDIACFYQGEN--RDYVTKILDYCDF-DPVIGIRVLIDKSLIEIST-DSRFWMH 450 (584)
Q Consensus 376 ~~~~~i~~~l~~s~~~L~~~~-k~~fl~la~fp~~~~--~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~~~-~~~~~mH 450 (584)
....+..++..||+.|++++ |.||++||+||.++. .+.+..+|.+++. ....++++|+++|||+..+ .++|+||
T Consensus 351 -~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMH 429 (1221)
T 1vt4_I 351 -NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429 (1221)
T ss_dssp -SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCC
T ss_pred -ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEeh
Confidence 35779999999999999999 999999999998764 5678999998853 4678999999999999863 5689999
Q ss_pred HHHHHHH
Q 035646 451 DLLKEIC 457 (584)
Q Consensus 451 ~lv~~~a 457 (584)
||+++++
T Consensus 430 DLllELr 436 (1221)
T 1vt4_I 430 SIYLELK 436 (1221)
T ss_dssp CHHHHHH
T ss_pred HHHHHHh
Confidence 9998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=307.96 Aligned_cols=273 Identities=21% Similarity=0.284 Sum_probs=213.5
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh---ccccc-ceEEEEechhhcccCChHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT---SHNFE-ASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
++.||||+.++++|.++|...+++.++|+|+||||+||||||.+++++. +..|+ .++|+. + +.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~---~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-V---GKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-E---ESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-C---CCC-chHHHHH
Confidence 4679999999999999998655568999999999999999999999864 67786 567765 2 222 2223333
Q ss_pred H---HHHHHhCCC---CCCCcChhhhHHHHHHHHcC--CCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchh
Q 035646 250 Q---LLSQLLKLP---NNGIWNVYDGINIIGRRLRH--KKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLL 321 (584)
Q Consensus 250 ~---i~~~l~~~~---~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 321 (584)
. +...+.... .....+.......+.+.+.+ +++||||||+|+...++.+ ++|++||||||+..++
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHH
Confidence 3 333332111 12234556667778888866 7999999999998776542 5789999999999887
Q ss_pred hccccceEeec---CCCCHHHHHHHhc----------------------CCchhHHHhhhhhhCCCHHHHHHHHHHHhhc
Q 035646 322 MMHGVDEIYNL---RELHDDKALQLFC----------------------GLPLALKVLGSFLYGKTTKEWESALKRLKRE 376 (584)
Q Consensus 322 ~~~~~~~~~~l---~~L~~~ea~~Lf~----------------------G~PLal~~~~~~L~~~~~~~w~~~l~~l~~~ 376 (584)
..++ ...+++ ++|+.+|+++||. |+||||.++|+.++... ..|...++.+...
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 6543 233444 5899999999997 99999999999998754 3688888887653
Q ss_pred c-----------hhhHHHHHHHhhhCCchhHHHHHhhhccccccC--ChhhHHHhhhcCCCchhhhHHHHhhccceeEec
Q 035646 377 S-----------ENEILDILKISFDGLRETEKKIFLDIACFYQGE--NRDYVTKILDYCDFDPVIGIRVLIDKSLIEIST 443 (584)
Q Consensus 377 ~-----------~~~i~~~l~~s~~~L~~~~k~~fl~la~fp~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~ 443 (584)
. ...+..++..||+.|+++.|.||+++|+||.+. +.+.+..+|..++.....+++.|+++|||+...
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec
Confidence 2 257899999999999999999999999999865 567888889877666788999999999999765
Q ss_pred CC---eEEecHHHHHHHHHH
Q 035646 444 DS---RFWMHDLLKEICQQI 460 (584)
Q Consensus 444 ~~---~~~mH~lv~~~a~~i 460 (584)
++ .|+||+++|+++++.
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHH
T ss_pred CCCccEEEEcHHHHHHHHhh
Confidence 33 699999999999987
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.7e-30 Score=234.32 Aligned_cols=122 Identities=25% Similarity=0.365 Sum_probs=112.1
Q ss_pred CCCCceeeEEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhHH
Q 035646 13 PLPHWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCLD 92 (584)
Q Consensus 13 ~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~ 92 (584)
..+.++|||||||+|+| +..|+++|+.+|+++|++||+|++++.+|+.|.++|.+||++|+++|+|+|++|+.|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 46789999999999999 55799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEeeeeccCcchhhcccchHHHHHHhHH
Q 035646 93 ELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYE 136 (584)
Q Consensus 93 El~~~~~~~~~~~~~~v~Pvf~~v~p~~vr~~~~~~~~~~~~~~ 136 (584)
||..++++...++ .+|+||||+++|++||+|.|.|++.|....
T Consensus 94 El~~~~~~~~~~~-~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 94 ELDGLFQLESSGR-SRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHHHHTCCCTTSC-CCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHHHHhcCC-CEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 9999999876666 789999999999999999999998776543
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=1.2e-25 Score=199.36 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=93.7
Q ss_pred CCCCceeeEEEcCccCcccCchHHHHHHHHhh--CCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhh
Q 035646 13 PLPHWKYDVFLSFRGEDTRKNFTDHLYSALDE--KGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWC 90 (584)
Q Consensus 13 ~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c 90 (584)
....+.|||||||+++| ..|+++|+.+|+. .|+++|+|++++.+|+.|.++|.+||++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 45567999999999999 6799999999998 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeeeeccCcchh----hcccchHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 035646 91 LDELVHILECKNTNNQQMVYPIFYDVEPAVV----RKQTETFQEAFAQYEEVFSENIEKVQKWRDAL 153 (584)
Q Consensus 91 ~~El~~~~~~~~~~~~~~v~Pvf~~v~p~~v----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (584)
..|+..++.+...+. .+||||||++++.++ +....-. +......+....+.+.+|++++
T Consensus 83 ~~El~~al~~~~~~~-~~vIpv~~~v~~~~lp~~Lr~~~~id---~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAE-GCTIPLLSGLSRAAYPPELRFMYYVD---GRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSS-SEEEEEECSCCGGGSCGGGGGSCCEE---TTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcC-CcEEEEEcCCChhhCCHHHhCeeeee---ccChHhhHHHHHHHHHHHHHhc
Confidence 999999999875444 578899999985554 3322110 1123445555556677776654
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.86 E-value=6.7e-23 Score=184.81 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=93.0
Q ss_pred CCCCceeeEEEcCccCcccCchHHHHHHHHhhC--CCcEEEeCCCCCCCCcccHHHHHHhh-hcceEEEEeccCcccchh
Q 035646 13 PLPHWKYDVFLSFRGEDTRKNFTDHLYSALDEK--GIIVFRDDKELERGESISPGLFKAIE-ESKISIVVFSRSYAFSTW 89 (584)
Q Consensus 13 ~~~~~~~dvFis~~~~D~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~y~~s~~ 89 (584)
....+.|||||||+++| ..||.+|+.+|+++ |+++|+|++++.+|+.|.++|.++|+ +|+++|+|+|++|+.|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34478999999999999 78999999999985 69999999999999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcEEEeeeeccC
Q 035646 90 CLDELVHILECKNTNNQQMVYPIFYDVE 117 (584)
Q Consensus 90 c~~El~~~~~~~~~~~~~~v~Pvf~~v~ 117 (584)
|..|+..|+.+...++..+||||||+.-
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 9999999998764333268999999964
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.85 E-value=1.6e-22 Score=185.23 Aligned_cols=102 Identities=22% Similarity=0.367 Sum_probs=88.5
Q ss_pred CCCCceeeEEEcCccCcccCchHHH-HHHHHhh--CCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchh
Q 035646 13 PLPHWKYDVFLSFRGEDTRKNFTDH-LYSALDE--KGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTW 89 (584)
Q Consensus 13 ~~~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~ 89 (584)
....+.|||||||+++| .+||.+ |+..|++ +|+++|+|++|+.+|+.|.++|.+||++|+++|+|+||+|+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 45678999999999999 689986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcEEEeeeecc
Q 035646 90 CLDELVHILECKNTNNQQMVYPIFYDV 116 (584)
Q Consensus 90 c~~El~~~~~~~~~~~~~~v~Pvf~~v 116 (584)
|..|+..|+.+...++..+|+||||+-
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 999999998654333336899999984
No 11
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.85 E-value=6.9e-23 Score=182.86 Aligned_cols=103 Identities=20% Similarity=0.351 Sum_probs=91.2
Q ss_pred CCceeeEEEcCccCcccCchHHH-HHHHHhhC--CCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhH
Q 035646 15 PHWKYDVFLSFRGEDTRKNFTDH-LYSALDEK--GIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCL 91 (584)
Q Consensus 15 ~~~~~dvFis~~~~D~~~~~~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~ 91 (584)
..+.|||||||+++| ..|+.+ |+..|+++ |+++|+|++++.+|+.+.++|.+||++|+++|+|+||+|+.|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 357899999999999 589997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hcCCCcEEEeeeec-cCcch
Q 035646 92 DELVHILECK-NTNNQQMVYPIFYD-VEPAV 120 (584)
Q Consensus 92 ~El~~~~~~~-~~~~~~~v~Pvf~~-v~p~~ 120 (584)
.|+..|+.+. ..++ .+|+||||+ +++..
T Consensus 80 ~El~~a~~~~~~~~~-~~vIpv~~~~i~~~~ 109 (149)
T 1fyx_A 80 YELDFSHFRLFDENN-DAAILILLEPIEKKA 109 (149)
T ss_dssp HHSCCSCCTTCGGGT-TCCEEEESSCCCTTT
T ss_pred HHHHHHHHHHHhcCC-CEEEEEEecCCChhh
Confidence 9999988543 3334 689999997 44433
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=175.18 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=90.0
Q ss_pred ceeeEEEcCccCcc---------cCchHHHHHH-HHh-hCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcc
Q 035646 17 WKYDVFLSFRGEDT---------RKNFTDHLYS-ALD-EKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYA 85 (584)
Q Consensus 17 ~~~dvFis~~~~D~---------~~~~~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~ 85 (584)
+.|||||||+++|+ ++.||.++.. .|+ +.|+++|+|++|+.+|+.|.++|.+||++|+++|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999995 3568887665 699 799999999999999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHhhcCCCcEEEeeeeccCcc
Q 035646 86 -FSTWCLDELVHILECKNTNNQQMVYPIFYDVEPA 119 (584)
Q Consensus 86 -~s~~c~~El~~~~~~~~~~~~~~v~Pvf~~v~p~ 119 (584)
.|.||..|+..++.+...++..+||||++.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999987444447999999885544
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.69 E-value=5.1e-16 Score=159.27 Aligned_cols=264 Identities=13% Similarity=0.132 Sum_probs=160.0
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhc---ccCChHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREIS---EEGGLTSLQNQ 250 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s---~~~~~~~~~~~ 250 (584)
+..|+||+++++.|.+++..+ +++.|+|++|+|||+|+++++++.. .+|+. ..... .......+...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHHHH
Confidence 477999999999999998753 5899999999999999999998752 55654 21111 01134445555
Q ss_pred HHHHHhC---------------CCCC--CCcChhhhHHHHHHHHcC-CCcEEEEeCCCCHH--------H-HHHHhcCCC
Q 035646 251 LLSQLLK---------------LPNN--GIWNVYDGINIIGRRLRH-KKVLLIIDDVVDIK--------Q-LECLAGKRE 303 (584)
Q Consensus 251 i~~~l~~---------------~~~~--~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~--------~-~~~l~~~~~ 303 (584)
+...+.. .... ...+.......+.+.... ++.+|||||++... . +..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 5443321 0000 012333444445554432 49999999996532 2 222222111
Q ss_pred CCCCCcEEEEEccccchhhc-----------cc-cceEeecCCCCHHHHHHHhc-----------------------CCc
Q 035646 304 WFGPGSRIVITSRDKHLLMM-----------HG-VDEIYNLRELHDDKALQLFC-----------------------GLP 348 (584)
Q Consensus 304 ~~~~gs~IiiTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~-----------------------G~P 348 (584)
..++.++|+|++....... .+ ....+.+.+|+.+|+.+++. |+|
T Consensus 161 -~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 161 -SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp -HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred -hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 1247789999876542111 11 22478999999999998874 999
Q ss_pred hhHHHhhhhhhC-CCHHHHHHHHHHHhhcchhhHHHHHHHhhhCC---chhHHHHHhhhccccccCChhhHHHhhhc-C-
Q 035646 349 LALKVLGSFLYG-KTTKEWESALKRLKRESENEILDILKISFDGL---RETEKKIFLDIACFYQGENRDYVTKILDY-C- 422 (584)
Q Consensus 349 Lal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~k~~fl~la~fp~~~~~~~l~~~~~~-~- 422 (584)
+++..++..+.. .+...+ ...+. +.+...+...+..+ ++..+.++..+|+ ...+...+...+.. .
T Consensus 240 ~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~ 310 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGT 310 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhC
Confidence 999988876432 232222 11111 11122222223333 6889999999998 23444555544421 1
Q ss_pred CCc---hhhhHHHHhhccceeEecCCeEE-ecHHHHHHHH
Q 035646 423 DFD---PVIGIRVLIDKSLIEISTDSRFW-MHDLLKEICQ 458 (584)
Q Consensus 423 ~~~---~~~~l~~L~~~sLi~~~~~~~~~-mH~lv~~~a~ 458 (584)
+.. ...+++.|.+.+||... ++.|. .|++++++.+
T Consensus 311 ~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 311 KIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 222 35789999999999887 46666 4889888754
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=1.9e-15 Score=155.32 Aligned_cols=267 Identities=12% Similarity=0.109 Sum_probs=156.3
Q ss_pred ccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhc--ccCChHHHHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREIS--EEGGLTSLQNQL 251 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s--~~~~~~~~~~~i 251 (584)
+..|+||+++++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+. ..... ...........+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHHHHHH
Confidence 5789999999999999 763 489999999999999999999876432 46665 21110 112233444333
Q ss_pred HHHHh-------------CCC------CCCCc-----ChhhhHHHHHHHHcC---CCcEEEEeCCCCHH-----HHHHHh
Q 035646 252 LSQLL-------------KLP------NNGIW-----NVYDGINIIGRRLRH---KKVLLIIDDVVDIK-----QLECLA 299 (584)
Q Consensus 252 ~~~l~-------------~~~------~~~~~-----~~~~~~~~l~~~L~~---k~~LlVlDdv~~~~-----~~~~l~ 299 (584)
...+. ... ..... ........+.+.+.. ++++|||||++... ++..++
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 33221 100 00000 001122333333322 49999999995422 111111
Q ss_pred cCCCCCCCCcEEEEEccccchhh-----------cccc-ceEeecCCCCHHHHHHHhc---------------------C
Q 035646 300 GKREWFGPGSRIVITSRDKHLLM-----------MHGV-DEIYNLRELHDDKALQLFC---------------------G 346 (584)
Q Consensus 300 ~~~~~~~~gs~IiiTTR~~~v~~-----------~~~~-~~~~~l~~L~~~ea~~Lf~---------------------G 346 (584)
..+....++.++|+|++...... ..+. ...+.+.+|+.+|+.+++. |
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G 241 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGG 241 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCS
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCC
Confidence 11111124678999998764321 1111 3578999999999999885 9
Q ss_pred CchhHHHhhhhhhC-CCHHHHHHHHHHHhhcchhhHHHHHHHhh---hCCchhHHHHHhhhccccccCChhhHHHhhh-c
Q 035646 347 LPLALKVLGSFLYG-KTTKEWESALKRLKRESENEILDILKISF---DGLRETEKKIFLDIACFYQGENRDYVTKILD-Y 421 (584)
Q Consensus 347 ~PLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~---~~L~~~~k~~fl~la~fp~~~~~~~l~~~~~-~ 421 (584)
+|+++..++..+.. .+...|.. .+.......+...+...+ ..|++..+.++..+|+ . . +...+..... .
T Consensus 242 ~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~ 315 (357)
T 2fna_A 242 IPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELE 315 (357)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHh
Confidence 99999998877643 33333321 111111111222222211 1688999999999998 3 2 5555543221 1
Q ss_pred CC-----CchhhhHHHHhhccceeEecCCeEE-ecHHHHHHH
Q 035646 422 CD-----FDPVIGIRVLIDKSLIEISTDSRFW-MHDLLKEIC 457 (584)
Q Consensus 422 ~~-----~~~~~~l~~L~~~sLi~~~~~~~~~-mH~lv~~~a 457 (584)
.| .....+++.|.+.+||...+ +.|+ .|++++++.
T Consensus 316 ~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 316 EGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 12 22367899999999998874 5566 589998874
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=4.9e-14 Score=147.99 Aligned_cols=266 Identities=16% Similarity=0.076 Sum_probs=153.8
Q ss_pred cccccccchhhHHHHHHHh-hhc--C--CceEEEEE--EecCCccHHHHHHHHHhhhccc-----cc-ceEEEEechhhc
Q 035646 173 ILEHLVGIDSHLKNLRLLM-DKE--C--NVVCMIGI--CVMGGIGKTTLAGVVYDLTSHN-----FE-ASSCLANVREIS 239 (584)
Q Consensus 173 i~~~~vGR~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~-~~~w~~~~~~~s 239 (584)
++..|+||+++++.|.+++ ... . ...+.+.| +|++|+|||+||+.+++..... +. ..+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 3578999999999999988 521 1 23456666 9999999999999999876542 12 234554 33
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc--CCCcEEEEeCCCCH--------HHHHHHhcCCCCC---C
Q 035646 240 EEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR--HKKVLLIIDDVVDI--------KQLECLAGKREWF---G 306 (584)
Q Consensus 240 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~~---~ 306 (584)
.......+...++..+.........+.......+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 445677888888888643222112234445566666664 67999999999653 3344333322111 2
Q ss_pred --CCcEEEEEccccchhhcc---------ccceEeecCCCCHHHHHHHhc------CC-----chhHHHhhhhhhC----
Q 035646 307 --PGSRIVITSRDKHLLMMH---------GVDEIYNLRELHDDKALQLFC------GL-----PLALKVLGSFLYG---- 360 (584)
Q Consensus 307 --~gs~IiiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~------G~-----PLal~~~~~~L~~---- 360 (584)
....+|+||+...+.... .....+.+.+|+.+++.++|. +. |-++..+......
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 345578788765432111 112338999999999999995 11 2233334333330
Q ss_pred -CCHHHHHHHHHHHh---h------cchhhHH---------HHHHHhhhCCchhHHHHHhhhccccc----cCChhhHHH
Q 035646 361 -KTTKEWESALKRLK---R------ESENEIL---------DILKISFDGLRETEKKIFLDIACFYQ----GENRDYVTK 417 (584)
Q Consensus 361 -~~~~~w~~~l~~l~---~------~~~~~i~---------~~l~~s~~~L~~~~k~~fl~la~fp~----~~~~~~l~~ 417 (584)
..+.....++.... . ...+.+. ..+..+++.||+..+.++..++.+.. .++...+..
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~ 335 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQ 335 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 12222222222110 0 0112222 23334557899999999999987642 223322221
Q ss_pred ----hh-hcCCC---c---hhhhHHHHhhccceeEe
Q 035646 418 ----IL-DYCDF---D---PVIGIRVLIDKSLIEIS 442 (584)
Q Consensus 418 ----~~-~~~~~---~---~~~~l~~L~~~sLi~~~ 442 (584)
+. ...|. . ...+++.|.+.+||...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 336 RYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 22 22221 1 25679999999999875
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=172.74 Aligned_cols=103 Identities=18% Similarity=0.326 Sum_probs=92.6
Q ss_pred CCCceeeEEEcCccCcccCchH-HHHHHHHhh-----CCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccc
Q 035646 14 LPHWKYDVFLSFRGEDTRKNFT-DHLYSALDE-----KGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFS 87 (584)
Q Consensus 14 ~~~~~~dvFis~~~~D~~~~~~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s 87 (584)
...++|||||||+++| ..|| ++|...|+. .|+++|++++|+.||+.|.++|.+||++|+++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4578999999999999 6898 679999985 6999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCcEEEeeeeccCc
Q 035646 88 TWCLDELVHILECKNTNNQQMVYPIFYDVEP 118 (584)
Q Consensus 88 ~~c~~El~~~~~~~~~~~~~~v~Pvf~~v~p 118 (584)
.||..|+..|+.+...++..+|+||||+.-|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999998877655444789999998543
No 17
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=4.2e-12 Score=131.90 Aligned_cols=261 Identities=12% Similarity=0.081 Sum_probs=157.6
Q ss_pred ccccccchhhHHHHHHHhhh--cCCceEEEEEEecCCccHHHHHHHHHhhhccc--------ccceEEEEechhhcccC-
Q 035646 174 LEHLVGIDSHLKNLRLLMDK--ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN--------FEASSCLANVREISEEG- 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~w~~~~~~~s~~~- 242 (584)
+..|+||+++++.+..++.. .....+.+.|+|++|+|||+||+.+++..... ....+|+. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 57899999999999988864 23335689999999999999999999876433 22334444 23334
Q ss_pred ChHHHHHHHHHHHhCCCCCC-CcChhhhHHHHHHHHcCCCcEEEEeCCCCHH------H-HHHHhcCCCCCCCCcEEEEE
Q 035646 243 GLTSLQNQLLSQLLKLPNNG-IWNVYDGINIIGRRLRHKKVLLIIDDVVDIK------Q-LECLAGKREWFGPGSRIVIT 314 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------~-~~~l~~~~~~~~~gs~IiiT 314 (584)
....+...++..+.+..... ..........+.+.+..++.+|||||++... . +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 66777788888775432222 2233455667777787766699999996532 2 33444432 67788999
Q ss_pred ccccchhhc------cccceEeecCCCCHHHHHHHhc-----CC------chhHHHhhhhhhC--CCHHHHHHHHHHHhh
Q 035646 315 SRDKHLLMM------HGVDEIYNLRELHDDKALQLFC-----GL------PLALKVLGSFLYG--KTTKEWESALKRLKR 375 (584)
Q Consensus 315 TR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf~-----G~------PLal~~~~~~L~~--~~~~~w~~~l~~l~~ 375 (584)
|+....... ......+.+++++.++..+++. +. |-++..++..... .+...-...++....
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 887632111 1112388999999999999987 21 2344444444331 122222222222110
Q ss_pred -------cchhhH--------HHHHHHhhhCCchhHHHHHhhhccccc-cCChhhHHHhhhcCC---C---chhhhHHHH
Q 035646 376 -------ESENEI--------LDILKISFDGLRETEKKIFLDIACFYQ-GENRDYVTKILDYCD---F---DPVIGIRVL 433 (584)
Q Consensus 376 -------~~~~~i--------~~~l~~s~~~L~~~~k~~fl~la~fp~-~~~~~~l~~~~~~~~---~---~~~~~l~~L 433 (584)
...+.+ ...+..+++.|++.++..+..++.... +...+....+....| . ....+++.|
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L 330 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISEL 330 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 011112 234556678999988888887876111 111112222222222 1 125678999
Q ss_pred hhccceeEe
Q 035646 434 IDKSLIEIS 442 (584)
Q Consensus 434 ~~~sLi~~~ 442 (584)
.+.|+|+..
T Consensus 331 ~~~gli~~~ 339 (384)
T 2qby_B 331 DMFGIVKIR 339 (384)
T ss_dssp HHTTSEEEE
T ss_pred HhCCCEEEE
Confidence 999999874
No 18
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=2.8e-12 Score=133.05 Aligned_cols=265 Identities=11% Similarity=0.041 Sum_probs=150.0
Q ss_pred ccccccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhccccc---ceEEEEechhhcccCChHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE---ASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~w~~~~~~~s~~~~~~~~~ 248 (584)
+..|+||+++++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. .........+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHHH
Confidence 578999999999999998742 334578999999999999999999987755432 344554 23333455556
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHc--CCCcEEEEeCCCCH------HHHHHHhcCCCC-CCCCcEEEEEccccc
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRLR--HKKVLLIIDDVVDI------KQLECLAGKREW-FGPGSRIVITSRDKH 319 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~IiiTTR~~~ 319 (584)
..++..+.........+.......+.+.+. +++.+||||+++.. +.+..+...... ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 666555422111112233444555666664 34899999999542 334444322211 134556777887654
Q ss_pred hhhccc------c-ceEeecCCCCHHHHHHHhc------C--C---chhHHHhhhhhhC--CCHHHHHHHHHHHhh----
Q 035646 320 LLMMHG------V-DEIYNLRELHDDKALQLFC------G--L---PLALKVLGSFLYG--KTTKEWESALKRLKR---- 375 (584)
Q Consensus 320 v~~~~~------~-~~~~~l~~L~~~ea~~Lf~------G--~---PLal~~~~~~L~~--~~~~~w~~~l~~l~~---- 375 (584)
...... . ...+.+++++.++..+++. + . +-++..++..... .+......++.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 322111 1 1478999999999999987 1 1 1222333332221 222222222222110
Q ss_pred -c----chhh--------HHHHHHHhhhCCchhHHHHHhhhccccc-c---CChhh-------HHHhhhcCC---Cchhh
Q 035646 376 -E----SENE--------ILDILKISFDGLRETEKKIFLDIACFYQ-G---ENRDY-------VTKILDYCD---FDPVI 428 (584)
Q Consensus 376 -~----~~~~--------i~~~l~~s~~~L~~~~k~~fl~la~fp~-~---~~~~~-------l~~~~~~~~---~~~~~ 428 (584)
. ..+. ....+..++..|++..+.++..++.+.. + +.... +........ .....
T Consensus 255 ~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 334 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSD 334 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 0 0111 1235666778899999988888885432 2 12221 222221122 12356
Q ss_pred hHHHHhhccceeEe
Q 035646 429 GIRVLIDKSLIEIS 442 (584)
Q Consensus 429 ~l~~L~~~sLi~~~ 442 (584)
+++.|.+.|+|+..
T Consensus 335 ~l~~L~~~gli~~~ 348 (386)
T 2qby_A 335 IINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHTSEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 89999999999864
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=1.8e-11 Score=127.02 Aligned_cols=265 Identities=9% Similarity=0.002 Sum_probs=154.5
Q ss_pred ccccccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhcccc------cceEEEEechhhcccCChH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF------EASSCLANVREISEEGGLT 245 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~~~~~~s~~~~~~ 245 (584)
++.|+||+.+++.+..++... ....+.+.|+|++|+|||+||+.+++.....+ ...+++. ........
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCHH
Confidence 578999999999999998643 33457899999999999999999998764321 1234444 34455667
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc--CCCcEEEEeCCCCHH-------HHHHHhcCCCCC--CCCcEEEEE
Q 035646 246 SLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR--HKKVLLIIDDVVDIK-------QLECLAGKREWF--GPGSRIVIT 314 (584)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-------~~~~l~~~~~~~--~~gs~IiiT 314 (584)
.+...++..+.................+.+.+. +++.+||||+++... .+..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 778888888643222222334455566666663 458899999997543 223333222111 345677888
Q ss_pred ccccchhhcc------ccc-eEeecCCCCHHHHHHHhc-----------CCchhHHHhhhhhhC--CCHHHHHHHHHHHh
Q 035646 315 SRDKHLLMMH------GVD-EIYNLRELHDDKALQLFC-----------GLPLALKVLGSFLYG--KTTKEWESALKRLK 374 (584)
Q Consensus 315 TR~~~v~~~~------~~~-~~~~l~~L~~~ea~~Lf~-----------G~PLal~~~~~~L~~--~~~~~w~~~l~~l~ 374 (584)
|+........ ... ..+.+++++.++..+++. --|-++..++..... .+......+++...
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8765321111 111 478999999999999886 112234444443331 12222222222211
Q ss_pred h---------cchhh--------HHHHHHHhhhCCchhHHHHHhhhccccccC---Chh----hHHHhhhcCCC------
Q 035646 375 R---------ESENE--------ILDILKISFDGLRETEKKIFLDIACFYQGE---NRD----YVTKILDYCDF------ 424 (584)
Q Consensus 375 ~---------~~~~~--------i~~~l~~s~~~L~~~~k~~fl~la~fp~~~---~~~----~l~~~~~~~~~------ 424 (584)
. ...+. ....+..++..|++.++..+..++.+..+. ... ....+....|.
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLR 333 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHH
Confidence 0 00111 123455667899999998888787543332 222 12222222221
Q ss_pred chhhhHHHHhhccceeEe
Q 035646 425 DPVIGIRVLIDKSLIEIS 442 (584)
Q Consensus 425 ~~~~~l~~L~~~sLi~~~ 442 (584)
....+++.|...|+++..
T Consensus 334 ~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 334 RVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCeEEE
Confidence 225689999999999974
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=4.1e-11 Score=124.51 Aligned_cols=287 Identities=13% Similarity=0.068 Sum_probs=169.7
Q ss_pred ccccccchhhHHHHHHHhhhc----CCceEEEEEEecCCccHHHHHHHHHhhhcccc-cceEEEEechhhcccCChHHHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE----CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-EASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
++.++||+.+++.+..++... ....+.+.|+|++|+||||||+.+++...... ...+++. .........+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHH
Confidence 578999999999999988742 11234899999999999999999998775542 2344444 34445566777
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHc--CCCcEEEEeCCCC--HHHHHHHhcCCCCCC----CCcEEEEEccccch
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRLR--HKKVLLIIDDVVD--IKQLECLAGKREWFG----PGSRIVITSRDKHL 320 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~IiiTTR~~~v 320 (584)
..++..+.................+.+.+. +++.+||||+++. ......+...+.... .+..||++|+....
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 777777533222122234445555555553 5688999999964 445555554433211 36678888876633
Q ss_pred hhccc-------cceEeecCCCCHHHHHHHhc------C-----CchhHHHhhhhhh--------CCCHHHHHHHHHHHh
Q 035646 321 LMMHG-------VDEIYNLRELHDDKALQLFC------G-----LPLALKVLGSFLY--------GKTTKEWESALKRLK 374 (584)
Q Consensus 321 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~------G-----~PLal~~~~~~L~--------~~~~~~w~~~l~~l~ 374 (584)
..... ....+.+++++.++..+++. + -|-++..++.... ..+.......+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22111 11368999999999999987 1 1234444555442 223333333333211
Q ss_pred h---------cchhhHHHHH--------HHhhhCCchhHHHHHhhhcccc---cc--CChhhHHHhhh----cCCC----
Q 035646 375 R---------ESENEILDIL--------KISFDGLRETEKKIFLDIACFY---QG--ENRDYVTKILD----YCDF---- 424 (584)
Q Consensus 375 ~---------~~~~~i~~~l--------~~s~~~L~~~~k~~fl~la~fp---~~--~~~~~l~~~~~----~~~~---- 424 (584)
. ...+.+..++ ...++.|+++.+.++..++.+. .+ .....+...+. ..+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 331 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRV 331 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCC
Confidence 1 1112333332 3346678888888888888664 22 23333322221 1221
Q ss_pred --chhhhHHHHhhccceeEecC-------CeEE-------ecHHHHHHHHHHHhhh
Q 035646 425 --DPVIGIRVLIDKSLIEISTD-------SRFW-------MHDLLKEICQQIVKRQ 464 (584)
Q Consensus 425 --~~~~~l~~L~~~sLi~~~~~-------~~~~-------mH~lv~~~a~~i~~~~ 464 (584)
....+++.|...++|..... |++. .|+++..+...+..++
T Consensus 332 ~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 332 HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 12468999999999997543 3222 3577777766666544
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.08 E-value=1.7e-09 Score=104.00 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=92.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++||+.+++.+..++..+. ..+.+.|+|++|+||||||+.+++.....+....+- ...... ...+...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--------CGVCDN-CREIEQG 92 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--------CSCSHH-HHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CcccHH-HHHHhcc
Confidence 568999999999999997543 234889999999999999999998764432111000 000000 0000000
Q ss_pred H----hCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccchhhc
Q 035646 255 L----LKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKHLLMM 323 (584)
Q Consensus 255 l----~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 323 (584)
. ..... ...........+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+.......
T Consensus 93 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 93 RFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp CCSSEEEEET-TCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CCcceEEecC-cccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 0 00000 0000001111122221 24679999999953 55566665544444567888888876542211
Q ss_pred --cccceEeecCCCCHHHHHHHhc
Q 035646 324 --HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 324 --~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
......+++++++.++..+++.
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHH
Confidence 1224678999999999999886
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.02 E-value=9.8e-09 Score=97.19 Aligned_cols=151 Identities=11% Similarity=0.160 Sum_probs=91.6
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++||+..++.+.+++..+. .+.+.|+|++|+|||+||+.+++..........++... .+...+...+.. .+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ 91 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVRH-KIKE 91 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHHH-HHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHHH-HHHH
Confidence 568999999999999998543 23489999999999999999998754332222222210 122222222211 1111
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccchhh--ccccceEe
Q 035646 255 LLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKHLLM--MHGVDEIY 330 (584)
Q Consensus 255 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~--~~~~~~~~ 330 (584)
...... ...+++.+||+||++. ....+.+...+.....+..+|+||+...... .......+
T Consensus 92 ~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 92 FARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 111000 0125688999999964 3444444443333356778888887653211 11223478
Q ss_pred ecCCCCHHHHHHHhc
Q 035646 331 NLRELHDDKALQLFC 345 (584)
Q Consensus 331 ~l~~L~~~ea~~Lf~ 345 (584)
++.+++.++..+++.
T Consensus 157 ~~~~~~~~~~~~~l~ 171 (226)
T 2chg_A 157 RFKPVPKEAMKKRLL 171 (226)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHH
Confidence 999999999988875
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=1.3e-08 Score=102.49 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=90.6
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-ccc-eEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEA-SSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++..... +.. .+.+. .+...+.. ....++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~-~i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGID-VVRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHH-HHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChH-HHHHHH
Confidence 568999999999999987543 2238999999999999999999876332 221 22222 11111211 112222
Q ss_pred HHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccchh-hc-cccc
Q 035646 253 SQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKHLL-MM-HGVD 327 (584)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~ 327 (584)
..+.... ..+ .+++.++|+||++. ....+.+...+.....++.+|+||+...-. .. ....
T Consensus 94 ~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 94 KHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2211000 001 34588999999974 334444443333334677888888664321 11 1233
Q ss_pred eEeecCCCCHHHHHHHhc
Q 035646 328 EIYNLRELHDDKALQLFC 345 (584)
Q Consensus 328 ~~~~l~~L~~~ea~~Lf~ 345 (584)
..+++.+++.++..+++.
T Consensus 159 ~~i~~~~~~~~~~~~~l~ 176 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLL 176 (323)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHH
Confidence 588999999999999887
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.71 E-value=1.3e-07 Score=87.08 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=40.0
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++||+++++.+.+.+..+ ..+.+.|+|++|+|||+||+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999998753 345678999999999999999998653
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=9.7e-08 Score=96.30 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=89.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|++..++.+..++..+. ...+.|+|++|+|||++|+.+++.+........++. +. .+...+... ....+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~~ 99 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE-LN-ASDERGINV-IREKVKE 99 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE-EE-TTCHHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE-ee-ccccCchHH-HHHHHHH
Confidence 568999999999999998653 234899999999999999999987543221111221 00 111000000 0011111
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccchh-hc-cccceEe
Q 035646 255 LLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKHLL-MM-HGVDEIY 330 (584)
Q Consensus 255 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~ 330 (584)
..... ....+++.++|+|+++. .+..+.+...+.....++++|+||...... .. ......+
T Consensus 100 ~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 100 FARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 00000 00125678999999964 344555554443345677888888765321 11 1123478
Q ss_pred ecCCCCHHHHHHHhc
Q 035646 331 NLRELHDDKALQLFC 345 (584)
Q Consensus 331 ~l~~L~~~ea~~Lf~ 345 (584)
.+.+++.++..+++.
T Consensus 165 ~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLR 179 (327)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHH
Confidence 999999999998886
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.64 E-value=3.6e-07 Score=92.12 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=127.4
Q ss_pred cccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..|+|++..++.+..++... ......+.|+|++|+|||+||+.+++.....| .++. .+.......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~----~~~~~~~~~----- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS----GPAIEKPGD----- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC----TTTCCSHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe----ccccCChHH-----
Confidence 57899999999998887631 22346789999999999999999998764322 2332 111111111
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHHc---CCCcEEEEeCCCCH--HHHHHHhcCCCCC------------------CCC
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRLR---HKKVLLIIDDVVDI--KQLECLAGKREWF------------------GPG 308 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~g 308 (584)
+...+. .++.+|+||+++.. .....+...+... .++
T Consensus 80 ---------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 ---------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 111221 35679999999653 2333332211100 123
Q ss_pred cEEEEEccccchhh-c--cccceEeecCCCCHHHHHHHhc------CCch---hHHHhhhhhhCCCHHHHHHHHHHHhhc
Q 035646 309 SRIVITSRDKHLLM-M--HGVDEIYNLRELHDDKALQLFC------GLPL---ALKVLGSFLYGKTTKEWESALKRLKRE 376 (584)
Q Consensus 309 s~IiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~------G~PL---al~~~~~~L~~~~~~~w~~~l~~l~~~ 376 (584)
..+|.||....... . ......+.+.+++.++..+++. |.++ ++..++.+. ..++......++.....
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRS-RGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS-CSCHHHHHHHHHHHTTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHHH
Confidence 55666665442211 1 1223578999999999988886 3332 333333332 22344444444443211
Q ss_pred c---------hhhHHHHH---HHhhhCCchhHHHHHhhhcccccc--CChhhHHHhhhcCCCchhhhHHH-HhhccceeE
Q 035646 377 S---------ENEILDIL---KISFDGLRETEKKIFLDIACFYQG--ENRDYVTKILDYCDFDPVIGIRV-LIDKSLIEI 441 (584)
Q Consensus 377 ~---------~~~i~~~l---~~s~~~L~~~~k~~fl~la~fp~~--~~~~~l~~~~~~~~~~~~~~l~~-L~~~sLi~~ 441 (584)
. .+.+..++ ......+++.++..+..+.....+ .....+...+..........++. +++.++|+.
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEE
T ss_pred HHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhc
Confidence 1 12222222 223345667777777665543222 33445544443222222233333 888999987
Q ss_pred ecCCe
Q 035646 442 STDSR 446 (584)
Q Consensus 442 ~~~~~ 446 (584)
...|+
T Consensus 298 ~~~g~ 302 (324)
T 1hqc_A 298 TPRGR 302 (324)
T ss_dssp ETTEE
T ss_pred CCccc
Confidence 76554
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.58 E-value=2.1e-06 Score=87.02 Aligned_cols=243 Identities=18% Similarity=0.121 Sum_probs=130.9
Q ss_pred cccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..++|++..++.+..++... ......|.|+|++|+|||+||+.+++.....| ..+. . .......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~---~~~~~~~------ 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-A---PMIEKSG------ 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-G---GGCCSHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-c---hhccchh------
Confidence 67899999999999988743 23345789999999999999999998765443 1221 1 1111111
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHH--cCCCcEEEEeCCCC--HHHHHHHhcCCCCC------------------CCCc
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRL--RHKKVLLIIDDVVD--IKQLECLAGKREWF------------------GPGS 309 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~------------------~~gs 309 (584)
.+...+ ..++.+|+||+++. ......+...+... .++.
T Consensus 96 --------------------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 96 --------------------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --------------------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --------------------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111111 24678999999963 23333332211110 1134
Q ss_pred EEEEEccccchhh---ccccceEeecCCCCHHHHHHHhc------CCc---hhHHHhhhhhhCCCHHHHHHHHHHHhh--
Q 035646 310 RIVITSRDKHLLM---MHGVDEIYNLRELHDDKALQLFC------GLP---LALKVLGSFLYGKTTKEWESALKRLKR-- 375 (584)
Q Consensus 310 ~IiiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~------G~P---Lal~~~~~~L~~~~~~~w~~~l~~l~~-- 375 (584)
.+|.||....... .......+.+.+++.++..+++. |.. -++..++. ....+..+....++....
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~-~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK-RSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH-TTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHCcCHHHHHHHHHHHHHHH
Confidence 5665555432211 11234678999999999998887 332 33333333 122344444444443211
Q ss_pred ----c---chhhHHHHH---HHhhhCCchhHHHHHhhhccccc-cCChhhHHHhhhcCCCchhhhHH-HHhhccceeEec
Q 035646 376 ----E---SENEILDIL---KISFDGLRETEKKIFLDIACFYQ-GENRDYVTKILDYCDFDPVIGIR-VLIDKSLIEIST 443 (584)
Q Consensus 376 ----~---~~~~i~~~l---~~s~~~L~~~~k~~fl~la~fp~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~ 443 (584)
. ..+.+..++ ..+...++..++..+..++-... ......+...+..........++ .|++.++|....
T Consensus 235 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp HHTTCSEECHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEET
T ss_pred HhhcCCccCHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCC
Confidence 0 112222222 22333455554556655554411 12344555444433222344555 889999999887
Q ss_pred CCeEEecH
Q 035646 444 DSRFWMHD 451 (584)
Q Consensus 444 ~~~~~mH~ 451 (584)
.|+.....
T Consensus 315 ~g~~~t~~ 322 (338)
T 3pfi_A 315 KGRIASAK 322 (338)
T ss_dssp TEEEECHH
T ss_pred CcccccHH
Confidence 77654433
No 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=4.3e-07 Score=90.55 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=96.4
Q ss_pred cccccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhcccc-----c--ceEEEEechhhcccCChH
Q 035646 175 EHLVGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-----E--ASSCLANVREISEEGGLT 245 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~--~~~w~~~~~~~s~~~~~~ 245 (584)
..+.||++|+++|...|... .+....+.|+|++|+|||++++.+++...... + ..+.+. .....+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHH
Confidence 44789999999999888632 33467889999999999999999999764321 1 123333 23345567
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH---cCCCcEEEEeCCCCH---HHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 246 SLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL---RHKKVLLIIDDVVDI---KQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
.++..|+.++.+......... .....+...+ .+++++++||+++.. +.+-.+............||.++...+
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~-~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISL-EALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCH-HHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCCCCchHHH-HHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 788888888755422211122 2222222222 456899999999753 333333321100011222333443322
Q ss_pred h---------hhccccceEeecCCCCHHHHHHHhc
Q 035646 320 L---------LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 320 v---------~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. ...++ ...+.+.+++.+|-.+++.
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMII 208 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHH
Confidence 1 11121 2468899999999998876
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.57 E-value=4e-07 Score=90.03 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=88.0
Q ss_pred ccccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
...++|.+..+++|...+... ....+.+.|+|++|+|||+||+.+++.....|- .+. ........
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~~~ 91 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RVV-GSELVKKF 91 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EEE-GGGGCCCS
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hHHHHHhc
Confidence 367899999999998887532 123456899999999999999999987644321 121 11111000
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhH-HHHHHHHcCCCcEEEEeCCCCH----------------HHHHHHhcCCC--
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGI-NIIGRRLRHKKVLLIIDDVVDI----------------KQLECLAGKRE-- 303 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~-- 303 (584)
........ ..+.......+.+|+||+++.. ..+..++..+.
T Consensus 92 --------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 92 --------------------IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred --------------------cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 00011111 1222233456789999999643 12222222211
Q ss_pred CCCCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 304 WFGPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 304 ~~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
....+..||.||....... .......+.++..+.++..+++.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~ 198 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILK 198 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHH
Confidence 1134567778887553322 11334578999999999999887
No 30
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.51 E-value=3e-06 Score=84.94 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=91.0
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc-cccc-eEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH-NFEA-SSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~-~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|++..++.+.+++..+. ...+.|+|++|+|||++|+.+++.... .+.. ...+. .+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~--------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERG--------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE----TTSTTC---------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe----CccccC---------
Confidence 568999999999999987543 233899999999999999999987522 2211 12222 111100
Q ss_pred HHHhCCCCCCCcChhhhHHHHHHH--H-cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccch-hhc-cc
Q 035646 253 SQLLKLPNNGIWNVYDGINIIGRR--L-RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKHL-LMM-HG 325 (584)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~l~~~--L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~-~~ 325 (584)
..........+... + .+++.++|+|+++. .+..+.+...+.....++.+|+||....- ... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25678999999964 44556666666655667788888765432 111 12
Q ss_pred cceEeecCCCCHHHHHHHhc
Q 035646 326 VDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~ 345 (584)
....+++.+++.++..+++.
T Consensus 152 r~~~i~~~~~~~~~~~~~l~ 171 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLL 171 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHH
Confidence 23578999999999998887
No 31
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.48 E-value=3.8e-06 Score=86.26 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=90.3
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|++..++.+...+..+. ..+.+.|+|++|+|||++|+.+++......... .. ....... ...+...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~-------~~~~~~~-~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT-------PCGVCDN-CREIEQG 85 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SS-------CCSSSHH-HHHHHTS
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC-------CCcccHH-HHHHhcc
Confidence 568999999999999987543 235788999999999999999998764322100 00 0000000 0011000
Q ss_pred ----HhCCCCCCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccch-hh
Q 035646 255 ----LLKLPNNGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKHL-LM 322 (584)
Q Consensus 255 ----l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~ 322 (584)
+...........+ ....+.+.+ .+++.++|+||++. ....+.+...+.....+..+|++|....- ..
T Consensus 86 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp CCSSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred CCCceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 0000000000111 122233332 24678999999963 44455555444333456677777764432 11
Q ss_pred c-cccceEeecCCCCHHHHHHHhc
Q 035646 323 M-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 ~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. ......+++.+++.++..+++.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~ 188 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHH
Confidence 1 1233678999999999999887
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.38 E-value=2.5e-05 Score=76.53 Aligned_cols=150 Identities=12% Similarity=0.144 Sum_probs=80.6
Q ss_pred ccccccchhhHHHHHH-------Hhhh-cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChH
Q 035646 174 LEHLVGIDSHLKNLRL-------LMDK-ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLT 245 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~ 245 (584)
...++|....++.+.. .+.. .....+.+.|+|++|+|||+||+.+++.....| +.+. . +..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~---~~~---- 100 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-S---PDK---- 100 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-C---GGG----
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-C---HHH----
Confidence 4568888887776655 2221 134468899999999999999999998754322 1121 1 110
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH------------HHHHHHh---cCCCCCCCCcE
Q 035646 246 SLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI------------KQLECLA---GKREWFGPGSR 310 (584)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~~~~l~---~~~~~~~~gs~ 310 (584)
+.+. ............+......++.+|+||+++.. ..++.+. ......+....
T Consensus 101 ---------~~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ---------MIGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ---------CTTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ---------hcCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 0000 00000011112222333456889999998543 2223332 22221233445
Q ss_pred EEEEccccchhhc----cccceEeecCCCCH-HHHHHHhc
Q 035646 311 IVITSRDKHLLMM----HGVDEIYNLRELHD-DKALQLFC 345 (584)
Q Consensus 311 IiiTTR~~~v~~~----~~~~~~~~l~~L~~-~ea~~Lf~ 345 (584)
||.||........ ......+.+++++. ++..+++.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHH
Confidence 6777776643322 12246788998888 66555554
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.36 E-value=8.2e-06 Score=79.28 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=81.7
Q ss_pred cccccchhhHHHHHHHhhhc----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 175 EHLVGIDSHLKNLRLLMDKE----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
..++|.+..++.+.+++..- ....+.+.|+|++|+|||+||+.+++.....| +.+. .........
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~- 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG- 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc-
Confidence 56899998888887765411 12245688999999999999999998764432 2222 111100000
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH-----------------HHHHHHhcCCCC--C
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI-----------------KQLECLAGKREW--F 305 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~--~ 305 (584)
..........+.......+.+|+||+++.. ..+..++..+.. .
T Consensus 81 ------------------~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 ------------------GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ------------------THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ------------------ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 000111112233333456889999999754 112233322111 1
Q ss_pred CCCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||.||........ ......+.++..+.++-.+++.
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~ 187 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFE 187 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHH
Confidence 234566667765432111 1234678899999999888876
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.33 E-value=2.2e-06 Score=78.40 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=39.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999988753 345678999999999999999998753
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.32 E-value=1.6e-06 Score=86.72 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=85.2
Q ss_pred cccccchhhHHHHHHHhhhc-------------CCceEEEEEEecCCccHHHHHHHHHhhhccccc--ceEEEE-echhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKE-------------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFE--ASSCLA-NVREI 238 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~-~~~~~ 238 (584)
..++|.+..++.|.+++... ......+.|+|++|+|||+||+.+++.+..... ...++. +....
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 35789998888887765421 233457899999999999999999986533211 111222 11000
Q ss_pred cccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCC-----------CHHHHHHHhcCCCCCC
Q 035646 239 SEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVV-----------DIKQLECLAGKREWFG 306 (584)
Q Consensus 239 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~-----------~~~~~~~l~~~~~~~~ 306 (584)
... . .... ...+...+ ..++-+|+||+++ ..+....+...+....
T Consensus 111 -----------------~~~-~--~g~~---~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 111 -----------------VGQ-Y--IGHT---APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp -----------------CCS-S--TTCH---HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred -----------------hhh-c--cccc---HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 000 0 0000 11111211 1245699999997 3444455554444345
Q ss_pred CCcEEEEEccccchhh--------ccccceEeecCCCCHHHHHHHhc
Q 035646 307 PGSRIVITSRDKHLLM--------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 ~gs~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+..||+||....... .......+.+++++.++..+++.
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 214 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG 214 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH
Confidence 5677888875432100 01233678999999999988885
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.30 E-value=2e-05 Score=80.82 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=39.7
Q ss_pred ccccccchhhHHHHHHH---hhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 174 LEHLVGIDSHLKNLRLL---MDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~---L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...|+|++..++.+..+ +..+....+.+.|+|++|+|||+||+.+++.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 46799999987775444 44333234689999999999999999999987643
No 37
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.28 E-value=4.6e-05 Score=75.80 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=87.4
Q ss_pred cccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..++|.+..++.|.+++... -...+.+.|+|++|+|||+||+.+++.....| +.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~---------- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK---------- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC----------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE----------
Confidence 56899999999988877531 12346789999999999999999998764322 1121
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH----------------HHHHHhcCCCC--C
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK----------------QLECLAGKREW--F 305 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~--~ 305 (584)
...+ .....+.. .......+.......+.+|+||+++... ....++..+.. .
T Consensus 82 ~~~l----~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 GPEL----LTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHH----HHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred hHHH----HhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 1122 22222211 1112223333345678999999997421 12222221111 1
Q ss_pred CCCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||.||........ ......+.++..+.++-.+++.
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHH
Confidence 245567777765532211 1344678899999998888776
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.24 E-value=1.6e-05 Score=79.95 Aligned_cols=147 Identities=14% Similarity=0.064 Sum_probs=85.1
Q ss_pred cccccchhhHHHHHHHhh----------hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 175 EHLVGIDSHLKNLRLLMD----------KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
..++|.+..++.|...+. ......+.+.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~-------- 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SS-------- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HH--------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hH--------
Confidence 568999999999988773 1112246799999999999999999998764432 1121 11
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCCCHH-------------HHHHHh---cCCCCCCC
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVVDIK-------------QLECLA---GKREWFGP 307 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~-------------~~~~l~---~~~~~~~~ 307 (584)
. +... ...........+.. ....++.+|+||+++... ....++ ........
T Consensus 86 -~----l~~~-------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 -D----LVSK-------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp -H----HHTT-------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred -H----Hhhc-------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 0 1000 00111122222222 234577899999996321 122222 22212234
Q ss_pred CcEEEEEccccchhhc---cccceEeecCCCCHHHHHHHhc
Q 035646 308 GSRIVITSRDKHLLMM---HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 308 gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+..||.||.....+.. -.....+.++..+.++-.+++.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~ 194 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 194 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHH
Confidence 5666667765433211 1244567888889998888886
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.22 E-value=2e-06 Score=82.31 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=77.4
Q ss_pred cccccch---hhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGID---SHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
+.|+|.+ ..++.+..+...+ ..+.+.|+|++|+|||+||+.+++..........++. ....... .
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~------- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S------- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C-------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H-------
Confidence 4577643 4566666666533 3468899999999999999999987655434455554 1111100 0
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH--H--HHHHhcCCCCC-CCC-cEEEEEccccch-----
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK--Q--LECLAGKREWF-GPG-SRIVITSRDKHL----- 320 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~g-s~IiiTTR~~~v----- 320 (584)
.... +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+....
T Consensus 96 ---------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 96 ---------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ---------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ---------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 0000 011 456799999995321 1 22222211100 122 247777764321
Q ss_pred ----hhccccceEeecCCCCHHHHHHHhc
Q 035646 321 ----LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ----~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+.....+++.+++.++..+++.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 1111122678999999999998886
No 40
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.21 E-value=2.9e-06 Score=74.72 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=37.2
Q ss_pred ccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 176 HLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.++|+...++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988876433333568899999999999999999854
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.21 E-value=2.1e-05 Score=79.17 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=80.0
Q ss_pred cccc-cchhh--HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLV-GIDSH--LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~v-GR~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
+.|+ |.... ...+..++..+......+.|+|++|+||||||+.+++.....-...+++. ...+...+
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----------~~~~~~~~ 80 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----------ADDFAQAM 80 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----------HHHHHHHH
Confidence 3454 54332 33445555433323467899999999999999999987643312233443 11223333
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH----HHHHHhcCCCC-CCCCcEEEEEccccch------
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK----QLECLAGKREW-FGPGSRIVITSRDKHL------ 320 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~v------ 320 (584)
...+.. .....+...+. ++.+|++|+++... ..+.+...+.. ...+..||+||.+...
T Consensus 81 ~~~~~~----------~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 81 VEHLKK----------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHH----------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHc----------CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 333211 01122233332 47799999995422 22222221110 1245678887764321
Q ss_pred ---hhccccceEeecCCCCHHHHHHHhc
Q 035646 321 ---LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 ---~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+.....+++++ +.++..+++.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 11122225689999 9999998887
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.21 E-value=1.3e-05 Score=84.23 Aligned_cols=150 Identities=18% Similarity=0.150 Sum_probs=84.6
Q ss_pred cccc-cchhhH--HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccce--EEEEechhhcccCChHHHHH
Q 035646 175 EHLV-GIDSHL--KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEAS--SCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 175 ~~~v-GR~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~w~~~~~~~s~~~~~~~~~~ 249 (584)
+.|+ |....+ ..+..+...+.. ...+.|+|++|+||||||+.+++.....++.. .++. ...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHH
Confidence 4455 655443 233333332222 56899999999999999999999775554332 3332 112233
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH----HHHHHHhcCCCC-CCCCcEEEEEccccch----
Q 035646 250 QLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI----KQLECLAGKREW-FGPGSRIVITSRDKHL---- 320 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~v---- 320 (584)
.+...+... ....+.+.+..++-+|+|||++.. ...+.+...+.. ...|..||+||.+..-
T Consensus 174 ~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 174 DLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 344333221 122344444446789999999532 222333222111 1356788888876321
Q ss_pred -----hhccccceEeecCCCCHHHHHHHhc
Q 035646 321 -----LMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 321 -----~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+.....+.+++++.++..+++.
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 1112222567899999999888876
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.20 E-value=2.9e-05 Score=79.34 Aligned_cols=147 Identities=8% Similarity=0.026 Sum_probs=82.4
Q ss_pred cccccchhhHHHHHHHhhh----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 175 EHLVGIDSHLKNLRLLMDK----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++.....| +.+. ........
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~-~~~l~~~~-- 157 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF---FSIS-ASSLTSKW-- 157 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEE-GGGGCCSS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEe-hHHhhccc--
Confidence 5689999999999888753 122356789999999999999999998764332 2222 11111100
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCCCH-------------HHHHHHhcCCC----CCC
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVVDI-------------KQLECLAGKRE----WFG 306 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~----~~~ 306 (584)
..........+.. ....++.+|+||+++.. .....++..+. ...
T Consensus 158 ------------------~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 158 ------------------VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------------cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0001111122222 22456889999999432 11222222111 112
Q ss_pred CCcEEEEEccccchhh---ccccceEeecCCCCHHHHHHHhc
Q 035646 307 PGSRIVITSRDKHLLM---MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 ~gs~IiiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+..||.||....... .......+.+...+.++..+++.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~ 261 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVI 261 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHH
Confidence 3445666665442211 11234567888888888887775
No 44
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.16 E-value=4.5e-06 Score=77.37 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=50.4
Q ss_pred ccccccccccccEEEecCccC---C-CCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 513 SSNSFLKMINLRMLLIRNLQL---P-EGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 513 ~~~~~~~~~~LrvL~L~~~~l---p-~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
++..|..+++|+.|+|+++.+ + ..+..++ +|++|+++++.++.+|.. | +|.+|++|+|+++.|+.+|.+
T Consensus 46 ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred hHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 346677788888888877743 2 3566676 788888888888877764 5 788888888888888777764
No 45
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.15 E-value=9.4e-05 Score=74.28 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=82.7
Q ss_pred cccccchhhHHHHHHHhhh----------cCCceEEEEEEecCCccHHHHHHHHHhhh-cccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK----------ECNVVCMIGICVMGGIGKTTLAGVVYDLT-SHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++.. ...| +.+. .....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHH----
Confidence 5688999988888876631 11224678999999999999999999876 2222 1121 10000
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCCCH-------------HHHHHHhcCC---CCCC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVVDI-------------KQLECLAGKR---EWFG 306 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~---~~~~ 306 (584)
.. .....+.....+.. ....++.+|+||+++.. .....++..+ ....
T Consensus 84 -------------~~---~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 -------------SK---WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp -------------CS---SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred -------------hh---hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 00 00111222222222 22457889999999643 1122222211 1123
Q ss_pred CCcEEEEEccccchhhc---cccceEeecCCCCHHHHHHHhc
Q 035646 307 PGSRIVITSRDKHLLMM---HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 ~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+..||.||........ -.....+.++..+.++-.+++.
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 189 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFK 189 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHH
Confidence 45556666654422111 1344677888888888888776
No 46
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.14 E-value=6.6e-06 Score=78.46 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=51.2
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|++|+|+++.+ |. .+..++ +|++|+++++.+..+|..+ ++.+|++|+|++++|..+|.+
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHH
Confidence 5577788888888888743 33 356676 7888888888888888888 888888888888888877753
No 47
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.2e-05 Score=82.01 Aligned_cols=162 Identities=11% Similarity=0.050 Sum_probs=84.0
Q ss_pred cccccchhhHHHHHHHh-hhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEech-----------------
Q 035646 175 EHLVGIDSHLKNLRLLM-DKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVR----------------- 236 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~----------------- 236 (584)
..++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.++..+.......+.+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 56899999999999988 5432 233 899999999999999999985422211111111000
Q ss_pred -----hhccc-CChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCC
Q 035646 237 -----EISEE-GGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPG 308 (584)
Q Consensus 237 -----~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g 308 (584)
..+.. ........+++..+....... . .. .+. .+.+++-++|+|+++. ....+.+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~---~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVD--F---QD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccc--c---cc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 00000 000001122222211100000 0 00 000 0234677999999974 33333343333222456
Q ss_pred cEEEEEccccc-hhhc-cccceEeecCCCCHHHHHHHhc
Q 035646 309 SRIVITSRDKH-LLMM-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 309 s~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+.+|++|.+.. +... ......+++.+++.++..+.+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~ 203 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILS 203 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHH
Confidence 77777776543 2211 1233678999999999988887
No 48
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.13 E-value=2.1e-06 Score=96.30 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=66.0
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCc
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKI 566 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L 566 (584)
...++.|.+... . +..+|..|..+++|++|+|++| .+|..++.|+ +|++|+|++|.|..+|..| +|.+|
T Consensus 246 l~~L~~L~Ls~N----~--l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 246 YDFLTRLYLNGN----S--LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF-QLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp CCSCSCCBCTTS----C--CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT-TCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred CCCCCEEEeeCC----c--CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC-CCCEEECCCCCCCccChhhhcCCCc
Confidence 344555554443 2 2245677899999999999988 4788899998 8999999999999999999 99999
Q ss_pred eEEEcCCCCcccc
Q 035646 567 VELNMRYSRIEQM 579 (584)
Q Consensus 567 ~~L~l~~s~i~~l 579 (584)
++|+|++|.+...
T Consensus 319 ~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 319 QFLGVEGNPLEKQ 331 (727)
T ss_dssp CCEECTTSCCCSH
T ss_pred cEEeCCCCccCCC
Confidence 9999999998754
No 49
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.13 E-value=6.5e-05 Score=76.56 Aligned_cols=147 Identities=14% Similarity=0.041 Sum_probs=83.0
Q ss_pred cccccchhhHHHHHHHhhhc----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 175 EHLVGIDSHLKNLRLLMDKE----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
..++|.+..++.|...+... ....+-|.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~-------- 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SS-------- 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HH--------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HH--------
Confidence 56899999999998877311 12235688999999999999999999774332 1121 11
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCCCHH-------------HHHHHhcCC---CCCCC
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVVDIK-------------QLECLAGKR---EWFGP 307 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~ 307 (584)
. + .... ..........+.. ....++.+|+||+++... ....++..+ .....
T Consensus 119 -~----l----~~~~---~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 -D----L----VSKW---MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp -H----H----HSCC------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred -H----H----hhhh---cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1 1 0100 0011122222222 224578999999996421 122232211 11134
Q ss_pred CcEEEEEccccchhh---ccccceEeecCCCCHHHHHHHhc
Q 035646 308 GSRIVITSRDKHLLM---MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 308 gs~IiiTTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+..||.||....... .-.....+.++..+.++-.+++.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 227 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 227 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHH
Confidence 555666775542211 11344677888889888888876
No 50
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.11 E-value=5.2e-06 Score=74.84 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=33.5
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCC--CCC-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLP--SNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP--~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++|+.|+|++|.+ |..+..++ +|++|++++|.++.+| ..+ ++.+|++|+|++|.+..+|
T Consensus 65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 3445555555555555532 22333344 5555555555555554 344 5555555555555555544
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.10 E-value=2.6e-06 Score=75.14 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=63.4
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCC--CCC-CC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLP--SNF-QP 563 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP--~~i-~L 563 (584)
...++.+.+.... +... ..|..+++|++|+|++|.+ |..++.++ +|++|++++|+++.+| ..+ ++
T Consensus 41 l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 41 FEELEFLSTINVG------LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp CTTCCEEECTTSC------CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEEECTTSCCCSHHHHGGGGGC
T ss_pred cCCCcEEECcCCC------CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEEECCCCcCCChHHHHHHhhC
Confidence 4566666665542 1122 5678899999999999854 33455577 8999999999999986 778 89
Q ss_pred CCceEEEcCCCCccccCC
Q 035646 564 DKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 564 ~~L~~L~l~~s~i~~lp~ 581 (584)
.+|++|+|++|.+..+|.
T Consensus 113 ~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 113 ENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TTCCEEECTTCGGGGSTT
T ss_pred CCCCEEeCcCCcccchHH
Confidence 999999999999988875
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=3.3e-05 Score=83.01 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=85.0
Q ss_pred cccccchhhHHHHHHHhhhcC---------------CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKEC---------------NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREIS 239 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s 239 (584)
..++|++..++.|..++.... ...+.+.|+|++|+|||++|+.+++... ++ .+.+. .+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in----~s 111 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN----AS 111 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----TT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----CC
Confidence 678999999999999987411 1246899999999999999999998773 21 12222 22
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH--HHcCCCcEEEEeCCCCH--------HHHHHHhcCCCCCCCCc
Q 035646 240 EEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR--RLRHKKVLLIIDDVVDI--------KQLECLAGKREWFGPGS 309 (584)
Q Consensus 240 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~--~L~~k~~LlVlDdv~~~--------~~~~~l~~~~~~~~~gs 309 (584)
.... .......+........ .........+ ...+++.+|++|+++.. ..+..+... .+.
T Consensus 112 ~~~~-~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~ 180 (516)
T 1sxj_A 112 DVRS-KTLLNAGVKNALDNMS-----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TST 180 (516)
T ss_dssp SCCC-HHHHHHTGGGGTTBCC-----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSS
T ss_pred Ccch-HHHHHHHHHHHhcccc-----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCC
Confidence 2222 2222222221111100 0000000000 11357889999999532 223333322 233
Q ss_pred EEEEEccccc---hhhccccceEeecCCCCHHHHHHHhc
Q 035646 310 RIVITSRDKH---LLMMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 310 ~IiiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.||+++.... +.........+.+++++.++..+.+.
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~ 219 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLM 219 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHH
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHH
Confidence 4555544322 22222334578999999999888875
No 53
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.09 E-value=0.00012 Score=76.83 Aligned_cols=149 Identities=14% Similarity=0.105 Sum_probs=85.8
Q ss_pred ccccccchhhHHHHHHHhhh----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 174 LEHLVGIDSHLKNLRLLMDK----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
-..++|.+..++.|...+.. .....+.+.|+|++|+|||+||+.+++.... ..++. ++.. .
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~~-~ 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISSS-D 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeHH-H
Confidence 36689999999999887631 1123468999999999999999999987621 12222 1111 1
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCCCH-------------HHHHHHhcCCCCC---C
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVVDI-------------KQLECLAGKREWF---G 306 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~ 306 (584)
+.....+. .......+.. .-..++.+|+||+++.. .....++..+... .
T Consensus 204 -------l~~~~~g~-------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 -------LVSKWLGE-------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -------HHhhhcch-------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11111111 0112222222 23467899999999743 2244555444332 3
Q ss_pred CCcEEEEEccccchhhc---cccceEeecCCCCHHHHHHHhc
Q 035646 307 PGSRIVITSRDKHLLMM---HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 ~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+..||.||........ -.....+.++..+.++-.+++.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 311 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFR 311 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHH
Confidence 45666767765432211 1344577888888888888776
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=1.3e-05 Score=81.53 Aligned_cols=160 Identities=11% Similarity=0.093 Sum_probs=86.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc--ccceEEEEechhhcccCChHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN--FEASSCLANVREISEEGGLTSLQNQLL 252 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~w~~~~~~~s~~~~~~~~~~~i~ 252 (584)
..++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++.+... +...+.-.+ .+...+...+ .+.+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~ 110 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN---ASDERGISIV-REKV 110 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC---SSSCCCHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc---cccccchHHH-HHHH
Confidence 5689999999999999875532 238999999999999999999875421 221111111 1111222222 2222
Q ss_pred HHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc-hhhc-cccce
Q 035646 253 SQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH-LLMM-HGVDE 328 (584)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~ 328 (584)
............. . .....-.+++-++++|+++. ......+...+.......++|++|.... +... .....
T Consensus 111 ~~~~~~~~~~~~~--~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 111 KNFARLTVSKPSK--H---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHSCCCCCCT--T---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHhhhcccccch--h---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 2111110000000 0 00011123456999999963 3333444433332345567777765442 2111 11234
Q ss_pred EeecCCCCHHHHHHHhc
Q 035646 329 IYNLRELHDDKALQLFC 345 (584)
Q Consensus 329 ~~~l~~L~~~ea~~Lf~ 345 (584)
.+.+.+++.++..+.+.
T Consensus 186 ~i~~~~~~~~~~~~~l~ 202 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLR 202 (353)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHH
Confidence 78899999999888776
No 55
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.07 E-value=6e-06 Score=75.16 Aligned_cols=68 Identities=19% Similarity=0.382 Sum_probs=56.2
Q ss_pred cccccccccccEEEecCcc---CCCC-ccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 514 SNSFLKMINLRMLLIRNLQ---LPEG-LEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 514 ~~~~~~~~~LrvL~L~~~~---lp~~-i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
+..|..+++|+.|+|+++. +|.. +..++ +|++|+++++.|+.+|.. | +|.+|++|+|+++.+.-.|.+
T Consensus 50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred HHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 3678899999999999885 4544 46787 899999999999999987 6 899999999999988766653
No 56
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.06 E-value=1.9e-05 Score=82.94 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=81.9
Q ss_pred cccccchhhH---HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHH
Q 035646 175 EHLVGIDSHL---KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQL 251 (584)
Q Consensus 175 ~~~vGR~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i 251 (584)
..++|.+..+ ..|...+..+. ...+.|+|++|+||||||+.+++.....|.. +. ....+...+ ..+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTSGVKEI-REA 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTCCHHHH-HHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccCCHHHH-HHH
Confidence 5689998888 77777777553 4679999999999999999999877544321 11 111122221 111
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH--HHHHHHhcCCCCCCCCcEEEE-Eccccch--h-hccc
Q 035646 252 LSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI--KQLECLAGKREWFGPGSRIVI-TSRDKHL--L-MMHG 325 (584)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii-TTR~~~v--~-~~~~ 325 (584)
+... ......+++.+|++|+++.. .+.+.++..+.. ....+|. ||.+... . ....
T Consensus 95 ~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 IERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhC
Confidence 1110 01112467889999999643 233333333321 2233443 5555421 1 1112
Q ss_pred cceEeecCCCCHHHHHHHhc
Q 035646 326 VDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 326 ~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...++.+.+++.++..+++.
T Consensus 156 R~~v~~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLT 175 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHH
Confidence 33578899999999988886
No 57
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.06 E-value=1.9e-05 Score=79.52 Aligned_cols=144 Identities=12% Similarity=0.149 Sum_probs=85.9
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
..++|.+..++.+.+++..+. ...++.++|++|+|||++|+.+++..... ...+. . ...+... ....+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~-~~~~~~~-i~~~~~~ 95 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----G-SDCKIDF-VRGPLTN 95 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----T-TTCCHHH-HHTHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----c-cccCHHH-HHHHHHH
Confidence 568999999999999998443 23578888999999999999999877422 22222 1 1122221 2221111
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH---HHHHHhcCCCCCCCCcEEEEEccccchhh-c-cccceE
Q 035646 255 LLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK---QLECLAGKREWFGPGSRIVITSRDKHLLM-M-HGVDEI 329 (584)
Q Consensus 255 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~-~~~~~~ 329 (584)
...... ..+++-++++|+++... ..+.+...+.....+..+|+||....-.. . ......
T Consensus 96 ~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 96 FASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 110000 12367899999998643 44444433332235677888876653211 1 112257
Q ss_pred eecCCCCHHHHHHHh
Q 035646 330 YNLRELHDDKALQLF 344 (584)
Q Consensus 330 ~~l~~L~~~ea~~Lf 344 (584)
+++++++.++-.+++
T Consensus 160 i~~~~~~~~e~~~il 174 (324)
T 3u61_B 160 ITFGQPTDEDKIEMM 174 (324)
T ss_dssp EECCCCCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHH
Confidence 899999988855444
No 58
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.06 E-value=5.5e-06 Score=75.38 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=55.2
Q ss_pred ccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 521 INLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 521 ~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
++|+.|+|+++.+ |..+..++ +|++|+|+++.|+.+|.. + +|.+|++|+|++++|+.+|.+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 7899999999854 55788898 999999999999999987 4 899999999999999999875
No 59
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.05 E-value=3.8e-06 Score=75.76 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=65.5
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccCC--CCccccccCeeEEEecCCCCCC-CCCCC-CCCCce
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRS-LPSNF-QPDKIV 567 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~-lP~~i-~L~~L~ 567 (584)
..++.+.+.... +.-..++..|..+++|++|+|++|.+. ..+..++ +|++|++++|.+.. +|..+ ++.+|+
T Consensus 24 ~~L~~L~l~~n~----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCK----SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCB----CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCC----CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 456666665542 111134466889999999999998654 4677787 99999999999999 66666 699999
Q ss_pred EEEcCCCCccccC
Q 035646 568 ELNMRYSRIEQMW 580 (584)
Q Consensus 568 ~L~l~~s~i~~lp 580 (584)
+|+|++|+|+.+|
T Consensus 99 ~L~Ls~N~l~~~~ 111 (168)
T 2ell_A 99 HLNLSGNKLKDIS 111 (168)
T ss_dssp EEECBSSSCCSSG
T ss_pred EEeccCCccCcch
Confidence 9999999999987
No 60
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.04 E-value=3.1e-06 Score=94.94 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=69.9
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCc
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKI 566 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L 566 (584)
...++.|.+.... +..++..+.++++|+.|+|++| .+|..++.|+ +|++|+|++|.|+.+|..| +|.+|
T Consensus 223 l~~L~~L~Ls~n~------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 223 DQLWHALDLSNLQ------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp CCCCCEEECTTSC------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred CCCCcEEECCCCC------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCC-CCCEEeCcCCcCCccChhhcCCCCC
Confidence 3445555554431 2233345558999999999998 4788899998 9999999999999999999 99999
Q ss_pred eEEEcCCCCccccCCCC
Q 035646 567 VELNMRYSRIEQMWCGI 583 (584)
Q Consensus 567 ~~L~l~~s~i~~lp~~~ 583 (584)
++|+|++|.|..+|.++
T Consensus 296 ~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp SEEECCSSCCCCCCSST
T ss_pred CEEECCCCCCCccChhh
Confidence 99999999999999864
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.04 E-value=6.9e-05 Score=79.51 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=86.1
Q ss_pred cccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..++|.+..+++|.+++... ....+-|.|+|++|+|||+||+.+++.....| +.+. .......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~l~~~-- 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK-- 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHHHHTS--
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chHhhhh--
Confidence 46899999999998887632 23346789999999999999999998764322 2222 1111100
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH-------------HHHHHHhcCCCC--CCCC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI-------------KQLECLAGKREW--FGPG 308 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~g 308 (584)
+. ..........+.....+++.+|+||+++.. .....|+..+.. ...+
T Consensus 278 -----------~~------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 278 -----------LA------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -----------CT------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -----------hc------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 00 001111222333444567889999999311 112222222111 1234
Q ss_pred cEEEEEccccchh-----hccccceEeecCCCCHHHHHHHhc
Q 035646 309 SRIVITSRDKHLL-----MMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 309 s~IiiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..||.||...... ........+.+...+.++-.++|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~ 382 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHH
Confidence 5566666654321 112344578899999999998887
No 62
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.04 E-value=6.1e-06 Score=75.11 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=62.7
Q ss_pred eeEEEeccCcccccccccccccccccccccccEEEecCcc---CCCCc-cccccCeeEEEecCCCCCCCCC--CC-CCCC
Q 035646 493 TVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ---LPEGL-EYLSNELRLLERHGYPLRSLPS--NF-QPDK 565 (584)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~---lp~~i-~~l~~~LryL~l~~~~l~~lP~--~i-~L~~ 565 (584)
.++.+.+.... +..+ ..|..+++|+.|+|++|. +|..+ ..++ +|++|++++|++..+|. .+ ++.+
T Consensus 43 ~L~~L~Ls~N~------l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 43 QFDAIDFSDNE------IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKS 114 (176)
T ss_dssp CCSEEECCSSC------CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCEEECCSCCCCCGGGGGGGGGCTT
T ss_pred CCCEEECCCCC------CCcc-cccccCCCCCEEECCCCcccccCcchhhcCC-CCCEEECCCCcCCcchhhHhhhcCCC
Confidence 56666555442 1111 467889999999999985 45454 7787 89999999999999998 77 8999
Q ss_pred ceEEEcCCCCccccCC
Q 035646 566 IVELNMRYSRIEQMWC 581 (584)
Q Consensus 566 L~~L~l~~s~i~~lp~ 581 (584)
|++|+|++|.+..+|.
T Consensus 115 L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 115 LTYLCILRNPVTNKKH 130 (176)
T ss_dssp CCEEECCSSGGGGSTT
T ss_pred CCEEEecCCCCCCcHh
Confidence 9999999999988875
No 63
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.03 E-value=7.1e-06 Score=77.72 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=48.8
Q ss_pred ccccccccccEEEecCcc---CCCC-ccccccCeeEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPEG-LEYLSNELRLLERHGYPLRSLPS-NF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~~-i~~l~~~LryL~l~~~~l~~lP~-~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|+++. +|.. +..++ +|++|+++++.+..+|. .| ++.+|++|+|++++|+.+|.+
T Consensus 74 ~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HHhhCCcCCCEEECCCCcCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 667778888888887774 3443 45666 78888888888887754 45 788888888888888777653
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.02 E-value=1.5e-05 Score=78.97 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=52.4
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccCCCC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~lp~~~ 583 (584)
..|..+++|+.|+|+++.+ |. .+..++ +|++|++++++++.+|..+ ++.+|++|+|++++++.+|.++
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhccccc-CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 5677888888888888743 33 345666 8888888888888888775 6888888888888888888764
No 65
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.02 E-value=6e-05 Score=77.92 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=40.4
Q ss_pred ccccccchhhHHHHHHHhhhc----------CCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
-..++|.+..++.|..++... ....+.+.|+|++|+|||+||+.+++....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 367899999999998887321 112467899999999999999999987543
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.01 E-value=2.8e-05 Score=82.46 Aligned_cols=143 Identities=10% Similarity=0.126 Sum_probs=79.5
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc-c----ceEEEEechhhcccCChHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-E----ASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~----~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
..++||+.+++.+...+.... ..-+.|+|++|+|||+||+.+++.+...+ + ..-++. + ...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~-l---~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-L---DMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C--------------
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e---eCC--------
Confidence 568999999999999987532 34568999999999999999999764322 1 111221 0 000
Q ss_pred HHHHHHhCCCCCCCcChhhhH-HHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccch---hh---
Q 035646 250 QLLSQLLKLPNNGIWNVYDGI-NIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHL---LM--- 322 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~~~-~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v---~~--- 322 (584)
.... ....... ..+...-..++.+|++| -..+....+.+.+. ....++|.+|..... ..
T Consensus 246 ---~~~~-------g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 246 ---TKYR-------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ---cccc-------chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCH
Confidence 0000 0011112 22223334578899999 23333344445443 234556665554431 00
Q ss_pred -ccccceEeecCCCCHHHHHHHhc
Q 035646 323 -MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 -~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.......+.+++.+.++..+++.
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQ 335 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHH
T ss_pred HHHHhCccceeCCCCHHHHHHHHH
Confidence 11123468999999999999987
No 67
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.01 E-value=8e-06 Score=77.84 Aligned_cols=86 Identities=26% Similarity=0.380 Sum_probs=67.2
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCC-C-CCCC
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDK 565 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~ 565 (584)
..++.+.+....- ..+. +..|..+++|+.|+|+++.+ |. .+..++ +|++|+++++.++.+|.. + .+.+
T Consensus 40 ~~L~~L~Ls~n~i---~~~~--~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQI---TKLE--PGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCC---CCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCcc---CccC--HHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCCcCCccChhHhCcchh
Confidence 4555555554421 1222 37789999999999999854 43 357787 999999999999999987 4 8999
Q ss_pred ceEEEcCCCCccccCCCC
Q 035646 566 IVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 566 L~~L~l~~s~i~~lp~~~ 583 (584)
|++|+|++++|+.+|.++
T Consensus 114 L~~L~Ls~N~l~~lp~~~ 131 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGI 131 (229)
T ss_dssp CCEEECCSSCCCSCCTTG
T ss_pred hCeEeccCCcccccCccc
Confidence 999999999999999764
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.00 E-value=6.8e-06 Score=82.99 Aligned_cols=86 Identities=16% Similarity=0.293 Sum_probs=64.6
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCc---cCCCCccccccCeeEEEecCC-CCCCCCCCC-C---
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGY-PLRSLPSNF-Q--- 562 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~-~l~~lP~~i-~--- 562 (584)
...++.+.+... . +..+|..|.++++|++|+|++| .+|..++.++ +|++|++++| .+..+|..+ .
T Consensus 103 l~~L~~L~L~~n----~--l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 103 LSHLQHMTIDAA----G--LMELPDTMQQFAGLETLTLARNPLRALPASIASLN-RLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp GTTCSEEEEESS----C--CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT-TCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred CCCCCEEECCCC----C--ccchhHHHhccCCCCEEECCCCccccCcHHHhcCc-CCCEEECCCCCCccccChhHhhccc
Confidence 445666655544 1 2244577888888999999887 4677888887 8999999887 577888887 4
Q ss_pred ------CCCceEEEcCCCCccccCCCC
Q 035646 563 ------PDKIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 563 ------L~~L~~L~l~~s~i~~lp~~~ 583 (584)
+.+|++|+|++|+++.+|.++
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~~lp~~l 202 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIRSLPASI 202 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred hhhhccCCCCCEEECcCCCcCcchHhh
Confidence 889999999998888888653
No 69
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00017 Score=73.68 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=87.2
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....| +.+. .......
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~sk-- 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELVQK-- 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGSCS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhhcc--
Confidence 5678999999999876642 223357799999999999999999999776544 1222 1111100
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHH-HHHHcCCCcEEEEeCCCCH----------------HHHHHHhcCCCC--
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINII-GRRLRHKKVLLIIDDVVDI----------------KQLECLAGKREW-- 304 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~-- 304 (584)
...+.+..+..+ ...-...+++|++|+++.. ..+..++..+..
T Consensus 222 ------------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 222 ------------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ------------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ------------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 001111112222 2223467999999999632 012233322221
Q ss_pred CCCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 305 FGPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 305 ~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+..||.||..+..+. ....+..+.++.-+.++-.++|.
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHH
Confidence 133455667776554321 12456788999888888888886
No 70
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=9.3e-06 Score=88.29 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=69.1
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCcc---CCCCccccccCeeEEEecCCCCCCC--CCCC-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ---LPEGLEYLSNELRLLERHGYPLRSL--PSNF-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~~~l~~l--P~~i-~L~ 564 (584)
...++.+.+... . +..+|..|..+++|+.|+|++|. +| .++.++ +|++|++++|.++.+ |..+ +|.
T Consensus 462 l~~L~~L~Ls~N----~--l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 462 LLLVTHLDLSHN----R--LRALPPALAALRCLEVLQASDNALENVD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp GTTCCEEECCSS----C--CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred cccCcEeecCcc----c--ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCC
Confidence 455666666544 2 23456789999999999999984 56 788888 999999999999999 8889 999
Q ss_pred CceEEEcCCCCccccCCC
Q 035646 565 KIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~~ 582 (584)
+|++|+|+++.+..+|..
T Consensus 534 ~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TCCEEECTTSGGGGSSSC
T ss_pred CCCEEEecCCcCCCCccH
Confidence 999999999999998864
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.97 E-value=5.1e-06 Score=83.92 Aligned_cols=55 Identities=27% Similarity=0.429 Sum_probs=29.0
Q ss_pred cccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCC
Q 035646 520 MINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSR 575 (584)
Q Consensus 520 ~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~ 575 (584)
+++|++|+|++| .+|..++.++ +|++|++++|.+..+|+.+ ++.+|++|+|++|+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQ-NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCT-TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEECcCCCcCcchHhhcCCC-CCCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence 555555555444 2344455554 5555555555555555555 55555555555543
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.97 E-value=3.5e-06 Score=74.35 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=65.2
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccCC--CCccccccCeeEEEecCCCCCC-CCCCC-CCCCce
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRS-LPSNF-QPDKIV 567 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~-lP~~i-~L~~L~ 567 (584)
..++.+.+... .+.....+..+..+++|+.|+|++|.+. ..++.++ +|++|++++|.+.. +|..+ ++.+|+
T Consensus 17 ~~l~~L~l~~n----~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNS----RSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTC----BCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCC----cCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45556655554 1221134467889999999999998654 4677787 99999999999998 77777 799999
Q ss_pred EEEcCCCCccccC
Q 035646 568 ELNMRYSRIEQMW 580 (584)
Q Consensus 568 ~L~l~~s~i~~lp 580 (584)
+|+|++|.++.+|
T Consensus 92 ~L~ls~N~i~~~~ 104 (149)
T 2je0_A 92 HLNLSGNKIKDLS 104 (149)
T ss_dssp EEECTTSCCCSHH
T ss_pred EEECCCCcCCChH
Confidence 9999999998875
No 73
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.97 E-value=2.6e-05 Score=73.80 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=42.2
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++|+.|+|+++.+ |..+..++ +|++|+++++.++.+|..+ .+.+|++|+|++++|..++
T Consensus 50 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp TSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred hHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 4566666777777766642 45566666 6777777777777776653 5677777777776666664
No 74
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.96 E-value=1.2e-05 Score=73.04 Aligned_cols=67 Identities=27% Similarity=0.437 Sum_probs=41.1
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|+++.+ |. .+..++ +|++|+++++.++.+|.. + ++.+|++|+|++++++.+|.+
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 46 GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 4456666666776666643 22 245555 666666666666666665 3 566666666666666666653
No 75
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.94 E-value=0.00014 Score=72.02 Aligned_cols=50 Identities=22% Similarity=0.088 Sum_probs=40.2
Q ss_pred cccccchhhHHHHHHHhhhc----------CCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 175 EHLVGIDSHLKNLRLLMDKE----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..++|.+..++.|.+.+..+ ....+.+.|+|++|+|||+||+.++.....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 57899999999998877431 112467899999999999999999987643
No 76
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.92 E-value=3.3e-05 Score=70.51 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=29.9
Q ss_pred hhhHHHHHHHhhhcC-CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 181 DSHLKNLRLLMDKEC-NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 181 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++.+.+++..-. .....++|+|++|+||||||+.++....
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444454443211 1246899999999999999999998764
No 77
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=4.9e-05 Score=75.59 Aligned_cols=142 Identities=13% Similarity=0.015 Sum_probs=85.8
Q ss_pred cchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh---cccccceEEEEechhhcc-cCChHHHHHHHHHH
Q 035646 179 GIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT---SHNFEASSCLANVREISE-EGGLTSLQNQLLSQ 254 (584)
Q Consensus 179 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~w~~~~~~~s~-~~~~~~~~~~i~~~ 254 (584)
|-++.++.|...+..+. .+...++|++|+|||++|..+++.. ...++....+. .+. ..++.. .+++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHH-HHHHHHH
Confidence 45566788888887554 5788999999999999999998742 11233334442 111 122222 2223333
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEcccc-chhhccccceEee
Q 035646 255 LLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDK-HLLMMHGVDEIYN 331 (584)
Q Consensus 255 l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~ 331 (584)
+...+ ..+++-++|+|+++ +.+..+.|+..+....+.+.+|++|.++ .+.+..... .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 21110 02456789999996 3455566655554445677777766444 344433334 889
Q ss_pred cCCCCHHHHHHHhc
Q 035646 332 LRELHDDKALQLFC 345 (584)
Q Consensus 332 l~~L~~~ea~~Lf~ 345 (584)
+.+++.++..+.+.
T Consensus 136 f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 136 VVVNVPKEFRDLVK 149 (305)
T ss_dssp EECCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999998886
No 78
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=7.4e-06 Score=89.07 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=61.1
Q ss_pred ccccccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccc--CCCC
Q 035646 513 SSNSFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQM--WCGI 583 (584)
Q Consensus 513 ~~~~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~l--p~~~ 583 (584)
+|. |..+++|+.|+|++| .+|..++.++ +|++|++++|.++.+| .+ +|.+|++|+|++|+|..+ |..+
T Consensus 456 lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 456 LCH-LEQLLLVTHLDLSHNRLRALPPALAALR-CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred CcC-ccccccCcEeecCcccccccchhhhcCC-CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 345 889999999999998 4788999998 9999999999999999 78 999999999999999999 6643
No 79
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.92 E-value=7.2e-05 Score=74.56 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=40.1
Q ss_pred cccccchhhHHHHHHHhhhcC-------CceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 175 EHLVGIDSHLKNLRLLMDKEC-------NVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..++|.+..++.+...+.... .....+.|+|++|+|||++|+.++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 568899999999988876431 11368999999999999999999987643
No 80
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.92 E-value=3.6e-05 Score=71.93 Aligned_cols=67 Identities=25% Similarity=0.410 Sum_probs=46.8
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|++|+|+++.+ |. .+..++ +|++|+++++.+..+|.. + ++.+|++|+|++++++.+|.+
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 4567777777777777643 32 345666 777777777777777766 4 677777777777777777653
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.92 E-value=5e-06 Score=73.03 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 176 HLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 578999999999888764222234588999999999999999887543
No 82
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.92 E-value=1.7e-05 Score=71.77 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=54.4
Q ss_pred ccccccccccEEEecCcc---CCC-CccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++|+.|+|+++. +|. .+..++ +|++|+++++.++.+|+. + ++.+|++|+|+++.+.-.+
T Consensus 48 ~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 48 GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred hhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 678899999999999985 444 357787 899999999999999986 6 8999999999998775443
No 83
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.90 E-value=1.8e-05 Score=73.19 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=41.8
Q ss_pred cccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccc
Q 035646 516 SFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~l 579 (584)
.|..+++|+.|+|+++.+ |..+..++ +|++|+++++.++.+|.. | ++.+|++|+|++++|..+
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp SGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred ccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 366677777777776642 44566666 677777777777766655 4 677777777777776655
No 84
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.89 E-value=1.8e-05 Score=74.82 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=47.0
Q ss_pred ccccccccccEEEecCccC---C-CCccccccCeeEEEecCCCCCCC-CCCC-CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL---P-EGLEYLSNELRLLERHGYPLRSL-PSNF-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p-~~i~~l~~~LryL~l~~~~l~~l-P~~i-~L~~L~~L~l~~s~i~~l 579 (584)
..|..+++|+.|+|+++.+ | ..+..++ +|++|+++++.+..+ |..| ++.+|++|+|++++|+.+
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 4677788888888877743 2 2366676 788888888888877 4456 788888888888888777
No 85
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=0.0002 Score=69.36 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=37.2
Q ss_pred cccccchhhHHHHHHHhhh---c-------CCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 175 EHLVGIDSHLKNLRLLMDK---E-------CNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..++|.+..++++.+++.. . ....+-+.|+|++|+||||||+.+++....
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5789999888887665431 1 011345889999999999999999987643
No 86
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.88 E-value=5.7e-05 Score=85.22 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=86.6
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc------ccceEEEEechhhcccCChHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN------FEASSCLANVREISEEGGLTSLQ 248 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~~~~~~s~~~~~~~~~ 248 (584)
..++||+.+++.+.+.|.... ..-+.|+|.+|+|||++|+.+++.+... ....++..+....
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 568999999999999887442 3457899999999999999999865321 1222332211100
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCH----------HHHHH-HhcCCCCCCCCcEEEEEcc
Q 035646 249 NQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDI----------KQLEC-LAGKREWFGPGSRIVITSR 316 (584)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~-l~~~~~~~~~gs~IiiTTR 316 (584)
.. ........+.....+.+.+ ..++.+|++|+++.. .+... +...+. ..+..+|.+|.
T Consensus 254 -------~~-~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp --------C-CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred -------hc-cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 00 0011122233333333334 345789999999743 22233 334433 23455666654
Q ss_pred ccchhh-------ccccceEeecCCCCHHHHHHHhc
Q 035646 317 DKHLLM-------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 317 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...... .......+.+.+.+.++..+++.
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~ 359 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 432110 11122468999999999988886
No 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.88 E-value=2.6e-05 Score=89.08 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=39.8
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++||+.+++.+...|.... .+.+.|+|.+|+|||+||+.+++.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999887432 34578999999999999999998763
No 88
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.87 E-value=2e-05 Score=71.29 Aligned_cols=62 Identities=18% Similarity=0.339 Sum_probs=55.2
Q ss_pred cccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccCCC
Q 035646 520 MINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 520 ~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~lp~~ 582 (584)
.++|+.|+|+++.+ |..+..++ +|++|+++++.|+.+|... +|.+|++|+|++++|+.+|.+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH
Confidence 37899999999854 55688888 9999999999999999874 899999999999999999875
No 89
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.86 E-value=1.2e-05 Score=81.63 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=37.6
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIE 577 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~ 577 (584)
..|..+.+|+.|+|+++.| |..+..|+ +|++|+|+++.|..+|..+ ....|++|+|.++.+.
T Consensus 50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp GGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred hHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 4566666666666666643 33456665 6666666666666666654 4333666666666554
No 90
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.86 E-value=1.3e-05 Score=72.85 Aligned_cols=83 Identities=10% Similarity=0.159 Sum_probs=64.1
Q ss_pred cceeEEEeccCcccccccccccccccccccc-cccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC--CCCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMI-NLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF--QPDK 565 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~-~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~ 565 (584)
...++.+.+....- ..++. +..+. +|+.|+|++|.+. ..+..++ +|++|++++|.+..+|+.+ ++.+
T Consensus 18 ~~~L~~L~l~~n~l------~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 18 AVRDRELDLRGYKI------PVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp TTSCEEEECTTSCC------CSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCceEEEeeCCCC------chhHH-hhhcCCCCCEEECCCCCCCcccccccCC-CCCEEECCCCcccccCcchhhcCCC
Confidence 45666666665421 12223 44444 9999999999654 4777787 9999999999999999876 8999
Q ss_pred ceEEEcCCCCccccCC
Q 035646 566 IVELNMRYSRIEQMWC 581 (584)
Q Consensus 566 L~~L~l~~s~i~~lp~ 581 (584)
|++|+|++|+|..+|.
T Consensus 90 L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 90 LTELILTNNSLVELGD 105 (176)
T ss_dssp CCEEECCSCCCCCGGG
T ss_pred CCEEECCCCcCCcchh
Confidence 9999999999998885
No 91
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00026 Score=73.37 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=85.9
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- .+. ...+...
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs-~s~L~sk-- 282 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVI-GSELVQK-- 282 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEE-hHHhhcc--
Confidence 4678999999999876531 2234678999999999999999999997765431 221 1111110
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHH-HHHHHcCCCcEEEEeCCCCHH----------------HHHHHhcCCCC--
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINI-IGRRLRHKKVLLIIDDVVDIK----------------QLECLAGKREW-- 304 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~-- 304 (584)
.....+..+.. +...-...+++|++|+++... .+..++..+..
T Consensus 283 ------------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 283 ------------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ------------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ------------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 00111111222 222335679999999996320 11222222111
Q ss_pred CCCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 305 FGPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 305 ~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+..||.||.....+. ....+..++++..+.++-.++|.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHH
Confidence 123445666776554321 12356788998888888888886
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.85 E-value=1.1e-05 Score=88.76 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=31.6
Q ss_pred ccccccccccEEEecCcc---CCC-CccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~ 578 (584)
.+|..+++|++|+|++|+ +|. .+..|+ +|++|++++|+++.+|+. | +|.+|++|+|++++++.
T Consensus 94 ~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 94 GAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred hHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 345555555555555543 222 244444 555555555555555543 3 55555555555555543
No 93
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00048 Score=71.50 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=86.6
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- .+. ...+...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~-~s~l~sk-- 254 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSP-ASGIVDK-- 254 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGTCCS--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hhhhccc--
Confidence 5677999999888776642 1233578999999999999999999997755431 222 1111110
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHH-HHHHHcCCCcEEEEeCCCCH----------------HHHHHHhcCCCC--
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINI-IGRRLRHKKVLLIIDDVVDI----------------KQLECLAGKREW-- 304 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~-- 304 (584)
........+.. +...-...+++|++|+++.. ..+..++..+..
T Consensus 255 ------------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 255 ------------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ------------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ------------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00111111222 22233568999999999621 012233322211
Q ss_pred CCCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 305 FGPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 305 ~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+..||.||..+..+. ....+..++++.-+.++-.++|.
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHH
Confidence 134556777876654322 12245678888888888888776
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.85 E-value=2.3e-05 Score=74.16 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=58.4
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|+++.+ |..+..++ +|++|+++++.+..+|.. | ++.+|++|+|++++|..++.
T Consensus 51 ~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 51 GIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp CCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred hhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence 5689999999999999854 34788888 999999999999999987 6 89999999999999998843
No 95
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.84 E-value=0.00018 Score=72.71 Aligned_cols=154 Identities=11% Similarity=0.039 Sum_probs=81.4
Q ss_pred hhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH-----
Q 035646 181 DSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL----- 255 (584)
Q Consensus 181 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l----- 255 (584)
+...+.+...+..+. -.+.+.++|++|+|||++|+.+++.+....... ... .+.-.....+...-
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~--------c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS--------CGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC--------CSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC--------CCCCHHHHHHhcCCCCCEE
Confidence 344566666665332 245789999999999999999998754322100 000 00000000000000
Q ss_pred -hCCCC-CCCcChhhhHHHHHHHH-----cCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc-hhhc-c
Q 035646 256 -LKLPN-NGIWNVYDGINIIGRRL-----RHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH-LLMM-H 324 (584)
Q Consensus 256 -~~~~~-~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~ 324 (584)
..... ......++ +..+.+.+ .+++-++|+|+++. .+..+.++..+....+++.+|++|.+.. +... .
T Consensus 78 ~~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 00000 00011111 11222222 24677999999974 4455556555544456677777776553 2222 1
Q ss_pred ccceEeecCCCCHHHHHHHhc
Q 035646 325 GVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 325 ~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.....+++.+++.++..+.+.
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~ 177 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLS 177 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHH
T ss_pred hcceeeeCCCCCHHHHHHHHH
Confidence 234578999999999998886
No 96
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=0.0006 Score=68.91 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=82.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
..++|.+..++.|...+..+. ...+.++|++|+||||+|+.++..+... +... +.. .. .+...+...+. ..+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~-~~-~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM-VLE-LN-ASDDRGIDVVR-NQIK 98 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH-EEE-EC-TTSCCSHHHHH-THHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccce-EEE-Ec-CcccccHHHHH-HHHH
Confidence 457899999999988887553 2238999999999999999999875322 1111 111 00 11111221111 1111
Q ss_pred HHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc-hhhc-cccceE
Q 035646 254 QLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH-LLMM-HGVDEI 329 (584)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-~~~~~~ 329 (584)
.+..... ...+.+-++|+|+++. .+..+.+...+......+++|++|.... +... ......
T Consensus 99 ~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 99 DFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 1110000 0113467899999953 3344444433332345667777765432 1111 112347
Q ss_pred eecCCCCHHHHHHHhc
Q 035646 330 YNLRELHDDKALQLFC 345 (584)
Q Consensus 330 ~~l~~L~~~ea~~Lf~ 345 (584)
+.+.+++.++..+.+.
T Consensus 164 ~~~~~l~~~~~~~~l~ 179 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIA 179 (340)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EeccCCCHHHHHHHHH
Confidence 8899999988877665
No 97
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.83 E-value=2.2e-05 Score=76.60 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=81.1
Q ss_pred cccccchhhHHHHHHHhhh----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 175 EHLVGIDSHLKNLRLLMDK----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
..++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.....|-. +. ......
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~---- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE---- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH----
Confidence 5689999998888876651 11112347899999999999999999876543311 11 000000
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCHH-----------------HHHHHhcCCCCC--
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDIK-----------------QLECLAGKREWF-- 305 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~-- 305 (584)
...+. ....... .+......++.+|+||+++... .+..++..+...
T Consensus 83 ---------~~~~~---~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 ---------MFVGL---GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp ---------SCSSS---CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred ---------hhcch---HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00010 0111111 2223334567899999995421 122233332211
Q ss_pred -CCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 306 -GPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 -~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.....||.||....... .......+.++..+.++-.+++.
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~ 193 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILK 193 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHH
Confidence 12245666776553221 11233567888888888777775
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.82 E-value=2.9e-05 Score=72.59 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=65.5
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCC-C-CCCC
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDK 565 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~ 565 (584)
..++.+.+....- ..+. +..|..+++|+.|+|+++.+ |. .+..++ +|++|+++++.+..+|.. + ++.+
T Consensus 28 ~~l~~L~l~~n~l---~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSL---KSLP--NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCC---CCCC--TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCcc---CcCC--hhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcCCccCHhHhcCccC
Confidence 3455565554421 1222 25688999999999999854 43 356777 999999999999999987 5 8999
Q ss_pred ceEEEcCCCCccccCCC
Q 035646 566 IVELNMRYSRIEQMWCG 582 (584)
Q Consensus 566 L~~L~l~~s~i~~lp~~ 582 (584)
|++|+|++++|..+|.+
T Consensus 102 L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDG 118 (208)
T ss_dssp CCEEECCSSCCCCCCTT
T ss_pred CCEEEcCCCcCcccCHh
Confidence 99999999999998864
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.82 E-value=2.5e-05 Score=77.31 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=40.5
Q ss_pred cccccccccccEEEecCccC---C-CCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccCCC
Q 035646 514 SNSFLKMINLRMLLIRNLQL---P-EGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 514 ~~~~~~~~~LrvL~L~~~~l---p-~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~lp~~ 582 (584)
+..+..+++|+.|+|+++.+ | ..+..++ +|++|+++++.+..+|... ++.+|++|+|++++++.+|.+
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred chhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 34555666666666666532 2 3455555 6666666666666666553 566666666666666666653
No 100
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.82 E-value=6e-05 Score=73.42 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=35.8
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++|.+..+..+.+.+..-......|.|+|.+|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999988877664322335688999999999999999998654
No 101
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=0.00027 Score=74.46 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=83.3
Q ss_pred cccccchhhHHHHHHHhhhc----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCCh
Q 035646 175 EHLVGIDSHLKNLRLLMDKE----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGL 244 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~ 244 (584)
..++|.+..++++.+++..- ....+-|.|+|++|+|||+||+.++......| +.+. .........
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~- 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV- 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh-
Confidence 56899998888887765421 01134588999999999999999998764332 1222 111111000
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH----------------HHHHHHhcCCCC--CC
Q 035646 245 TSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI----------------KQLECLAGKREW--FG 306 (584)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~ 306 (584)
. .........+.....+.+.+|+||+++.. ..+..++..+.. ..
T Consensus 91 -----------------g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 91 -----------------G-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp -----------------T-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred -----------------c-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 00111222334444567999999999531 123333322211 12
Q ss_pred CCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 307 PGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 ~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+..||.||.....+.. ......+.++..+.++-.+++.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~ 196 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILE 196 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHH
Confidence 35566777766543321 1244577888888777777765
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.81 E-value=2.8e-05 Score=75.01 Aligned_cols=86 Identities=26% Similarity=0.341 Sum_probs=62.4
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccC---C-CCccccccCeeEEEecCCCCCCCCCCC--CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL---P-EGLEYLSNELRLLERHGYPLRSLPSNF--QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l---p-~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~ 564 (584)
...++.+.+....- ..+. +..|..+++|++|+|+++.+ | ..+..++ +|++|+++++.++.+|... ++.
T Consensus 58 l~~L~~L~L~~n~l---~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 58 LTKLTWLNLDYNQL---QTLS--AGVFDDLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp CTTCCEEECTTSCC---CCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCCEEECCCCcC---CccC--HhHhccCCcCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCC
Confidence 45566666554421 1122 25678888899999988754 3 3456777 8999999999999988874 799
Q ss_pred CceEEEcCCCCccccCCC
Q 035646 565 KIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~~ 582 (584)
+|++|+|++++|+.+|.+
T Consensus 132 ~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp TCCEEECCSSCCCCCCTT
T ss_pred cccEEECcCCcCCccCHH
Confidence 999999999998888763
No 103
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.81 E-value=5.9e-05 Score=73.74 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=43.0
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|++|.+ |. .++.++ +|++|++++|++..+|... ++.+|++|+|++|++..+|.
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred HHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 4466677777777776643 22 245565 6777777777777776653 67777777777777766654
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.81 E-value=3.9e-05 Score=78.42 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=29.2
Q ss_pred cccccccccEEEecCccC---C-CCccccccCeeEEEecCCCCCCCC-CCC-CCCCceEEEcCCCCccccC
Q 035646 516 SFLKMINLRMLLIRNLQL---P-EGLEYLSNELRLLERHGYPLRSLP-SNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~~l---p-~~i~~l~~~LryL~l~~~~l~~lP-~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
.|..+++|+.|+|+++.+ | ..+..++ +|++|+|+++.|..++ ..| +|.+|++|+|++++|..+|
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred hccCCCCCCEEECCCCcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 344555555555554432 1 1234444 4555555554444442 233 4445555555544444444
No 105
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.80 E-value=0.0012 Score=66.58 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=39.6
Q ss_pred cccccchhhHHHHHHHhhhc---CCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 175 EHLVGIDSHLKNLRLLMDKE---CNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..++|.+..++.+...+..+ ......++|+|++|+||||||+.++.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56789988888887777643 223467899999999999999999987644
No 106
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00027 Score=73.23 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=41.2
Q ss_pred ccccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
-..+.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 35678999999988776642 223357799999999999999999999775543
No 107
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.79 E-value=8.9e-06 Score=81.48 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=49.7
Q ss_pred cccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccCCC
Q 035646 514 SNSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPDKIVELNMRYSRIE-QMWCG 582 (584)
Q Consensus 514 ~~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~~L~~L~l~~s~i~-~lp~~ 582 (584)
|..|.++++|+.|+|+++. +|..+..++ +|++|+++++.+. .+|..+ ++.+|++|+|+++++. .+|..
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH
Confidence 4667777778888877763 466677777 7888888877776 677777 7888888888888776 56653
No 108
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.79 E-value=6.5e-05 Score=73.42 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=61.0
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCCC--CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSNF--QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~i--~L~ 564 (584)
...++.+.+....- ..+. +..|..+++|+.|+|++|.+ |. .++.++ +|++|++++|.+..+|... ++.
T Consensus 84 l~~L~~L~L~~n~l---~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~ 157 (272)
T 3rfs_A 84 LTNLTYLILTGNQL---QSLP--NGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLT 157 (272)
T ss_dssp CTTCCEEECTTSCC---CCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCEEECCCCcc---CccC--hhHhcCCcCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCc
Confidence 45566665554411 1122 25578888888999888753 33 367777 8999999988888888764 788
Q ss_pred CceEEEcCCCCccccCCC
Q 035646 565 KIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~~ 582 (584)
+|++|+|++|++..+|.+
T Consensus 158 ~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp TCCEEECCSSCCCCCCTT
T ss_pred cCCEEECCCCCcCccCHH
Confidence 999999999988888753
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.79 E-value=2e-05 Score=73.01 Aligned_cols=64 Identities=9% Similarity=0.171 Sum_probs=35.7
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCC-CCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYP-LRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~-l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++|+.|+|++|.+ |..+..++ +|++|++++|+ +..+| .+ ++.+|++|+|++|+|..+|
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 4455566666666665533 33445555 56666666665 55555 34 5666666666666555543
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.77 E-value=3.4e-05 Score=74.44 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=66.7
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCC-C-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~ 564 (584)
...++.+.+....- ..+. +..|..+++|+.|+|+++.+ |. .+..++ +|++|+++++.+..+|.. + ++.
T Consensus 82 l~~L~~L~L~~n~l---~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 82 LTELGTLGLANNQL---ASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp CTTCCEEECTTSCC---CCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcCCEEECCCCcc---cccC--hhHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECcCCcCCccCHHHcCcCc
Confidence 45667666655421 1222 26788999999999999854 43 357787 999999999999999984 7 899
Q ss_pred CceEEEcCCCCccccCCC
Q 035646 565 KIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp~~ 582 (584)
+|++|+|++++++.+|.+
T Consensus 156 ~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp TCCEEECCSSCCSCCCTT
T ss_pred CCCEEECCCCcCCccCHH
Confidence 999999999999998763
No 111
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.77 E-value=0.0001 Score=83.16 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=80.5
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccc-----cceEEEEechhhcccCChHHHHH
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF-----EASSCLANVREISEEGGLTSLQN 249 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~w~~~~~~~s~~~~~~~~~~ 249 (584)
..++||+.+++.+...|.... ..-+.|+|++|+|||++|+.+++.+.... ....++. +..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C-----------
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----ecc---------
Confidence 568999999999999987532 23578999999999999999998753211 1111111 000
Q ss_pred HHHHHHhCCCCCCCcChhh-hHHHHHHHHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchh---h---
Q 035646 250 QLLSQLLKLPNNGIWNVYD-GINIIGRRLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLL---M--- 322 (584)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~---~--- 322 (584)
+.. ...+.+. ....+......++.+|++| ...+....+.+.+. ....++|.||...... .
T Consensus 245 -------g~~--~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 -------GTK--YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred -------ccc--ccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 000 0001111 2222333334678999999 22333344445443 3345666666544310 0
Q ss_pred -ccccceEeecCCCCHHHHHHHhc
Q 035646 323 -MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 323 -~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.......+.+++.+.++..+++.
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~ 335 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQ 335 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHH
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHH
Confidence 01122568999999999999987
No 112
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00047 Score=71.46 Aligned_cols=148 Identities=16% Similarity=0.104 Sum_probs=86.7
Q ss_pred ccccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
-..+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+. ...+...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~~~- 254 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL---KLA-APQLVQM- 254 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCSS-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE---EEe-hhhhhhc-
Confidence 36678999999998876531 1233678999999999999999999997755431 221 1111110
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhHHHHH-HHHcCCCcEEEEeCCCCH-------------H---HHHHHhcCCCCC
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGINIIG-RRLRHKKVLLIIDDVVDI-------------K---QLECLAGKREWF 305 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~-------------~---~~~~l~~~~~~~ 305 (584)
.....+..+..+. ..-...+++|++|+++.. . .+..++..+...
T Consensus 255 -------------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 -------------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp -------------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred -------------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 0011111122222 222457999999999421 0 122333332222
Q ss_pred --CCCcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc
Q 035646 306 --GPGSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 --~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..||.||..+..+. ....+..++++.-+.++-.++|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHH
Confidence 23456666877654432 12355678898888888888876
No 113
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.75 E-value=1.1e-05 Score=80.80 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=53.0
Q ss_pred ccccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCC-CCCCCC-CCC-CceEEEcCCCCcc-ccCC
Q 035646 513 SSNSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPD-KIVELNMRYSRIE-QMWC 581 (584)
Q Consensus 513 ~~~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~-~L~~L~l~~s~i~-~lp~ 581 (584)
.|..|.++++|+.|+|+++. +|..+..++ +|++|+++++++. .+|..+ ++. +|++|+|+++++. .+|.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 34677888888888888873 567788887 8888888888887 788888 777 8888888888876 4454
No 114
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00055 Score=70.29 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=85.4
Q ss_pred ccccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
-..+.|.++.+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+. ...+...
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk- 255 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQK- 255 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCS-
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhc-
Confidence 35667899999988776542 1223578999999999999999999997765432 121 1111110
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHcCCCcEEEEeCCCCH----------------HHHHHHhcCCCC-
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR-RLRHKKVLLIIDDVVDI----------------KQLECLAGKREW- 304 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~- 304 (584)
...+.+..+..+.. .-...+++|++|+++.. ..+..++..+..
T Consensus 256 -------------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 256 -------------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp -------------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred -------------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 01111122222222 23467999999998521 112223222111
Q ss_pred -CCCCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 305 -FGPGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 305 -~~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
...+..||.||.....+.. ...+..+.++.-+.++-.++|.
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHH
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHH
Confidence 1334566777765544321 1345678888888888888876
No 115
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.74 E-value=4.5e-05 Score=76.75 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=57.7
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|+++.+ +..+..++ +|++|++++|++..+|..+ ++.+|++|+|++++|+.+|..
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChh
Confidence 6788899999999998853 34677887 8999999999999999999 899999999999999888753
No 116
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.73 E-value=0.00015 Score=72.17 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=38.7
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+.++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999988887533334568899999999999999999854
No 117
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.73 E-value=0.00011 Score=71.74 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=43.6
Q ss_pred ccccccccccEEEecCccC---C-CCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL---P-EGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p-~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|+++.+ | ..+..++ +|++|+++++.+..+|.. + ++.+|++|+|++++++.+|.
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 4456666677777766642 2 2355566 777777777777777765 4 67777777777777776664
No 118
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.72 E-value=6.3e-05 Score=82.43 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=35.0
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCC-CCC-CCCCceEEEcCCCCcc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLP-SNF-QPDKIVELNMRYSRIE 577 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP-~~i-~L~~L~~L~l~~s~i~ 577 (584)
..|..+++||+|+|+++.+ |..++.++ +|++|++++|.+..+| ..+ ++.+|++|+|++|.+.
T Consensus 74 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred HHhhchhhcCEeECCCCcccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 4555666666666655532 44555555 5666666666555555 334 5555555555555554
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.68 E-value=0.00011 Score=67.85 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=62.5
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~ 564 (584)
...++.+.+....- ..+.. ..|..+++|+.|+|+++.+ |..+..++ +|++|+++++.+..+|.. | ++.
T Consensus 53 l~~L~~L~Ls~N~i---~~i~~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 53 YKHLTLIDLSNNRI---STLSN--QSFSNMTQLLTLILSYNRLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp CTTCCEEECCSSCC---CCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCT
T ss_pred ccCCCEEECCCCcC---CEeCH--hHccCCCCCCEEECCCCccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCc
Confidence 45566665554421 12222 6799999999999999853 34688888 999999999999999986 6 899
Q ss_pred CceEEEcCCCCc
Q 035646 565 KIVELNMRYSRI 576 (584)
Q Consensus 565 ~L~~L~l~~s~i 576 (584)
+|++|+|+++.+
T Consensus 127 ~L~~L~L~~N~~ 138 (193)
T 2wfh_A 127 ALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSCE
T ss_pred cccEEEeCCCCe
Confidence 999999999875
No 120
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.68 E-value=5.9e-05 Score=73.64 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=46.9
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|+++.+ |. .+..++ +|++|+++++.+..+|.. + ++.+|++|+|++++|+.+|.+
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCc-ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 4567777777777777643 33 255666 777777777777777765 5 677777777777777777653
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.67 E-value=2.1e-06 Score=79.94 Aligned_cols=63 Identities=21% Similarity=0.112 Sum_probs=34.9
Q ss_pred cccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 516 SFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
.|..+++|+.|+|++| .+|..+..++ +|++|++++|.+..+| .+ ++.+|++|+|++++|..+|
T Consensus 65 ~~~~l~~L~~L~l~~n~l~~l~~~~~~~~-~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIKKIENLDAVAD-TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWG 131 (198)
T ss_dssp CHHHHTTCCEEEEEEEEECSCSSHHHHHH-HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHH
T ss_pred ccccCCCCCEEECCCCCcccccchhhcCC-cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchh
Confidence 4555556666666555 2344444444 5666666666666655 34 5666666666666555443
No 122
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.67 E-value=4.7e-05 Score=83.41 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=67.7
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCC-CCCC-CCCC
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSL-PSNF-QPDK 565 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~l-P~~i-~L~~ 565 (584)
+.++.+.+....- ..+.. ..|.++++||+|+|+++.+ |..+..++ +||+|++++|.+..+ |..| +|.+
T Consensus 32 ~~l~~L~Ls~n~l---~~~~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPL---KILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCC---CEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCc---CEeCh--hhccCCccCcEEeCCCCcccccCHHHhhchh-hcCEeECCCCcccccChhhcCCccc
Confidence 5566666655421 12222 6799999999999999853 56788898 999999999999999 7788 9999
Q ss_pred ceEEEcCCCCccccCC
Q 035646 566 IVELNMRYSRIEQMWC 581 (584)
Q Consensus 566 L~~L~l~~s~i~~lp~ 581 (584)
|++|+|++|++..+|.
T Consensus 106 L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 106 LENLVAVETKLASLES 121 (606)
T ss_dssp CCEEECTTSCCCCSSS
T ss_pred CCEEEccCCccccccc
Confidence 9999999999998873
No 123
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.66 E-value=7.4e-05 Score=74.33 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=39.7
Q ss_pred ccccccchhhHHHHHHHhhh------------cCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDK------------ECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+.++|++..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46689999999999877754 112245788999999999999999998764
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.63 E-value=4.3e-05 Score=70.80 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=54.3
Q ss_pred ccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCCC-CCCCC-CCCCceEEEcCCCC-ccccC
Q 035646 515 NSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLRS-LPSNF-QPDKIVELNMRYSR-IEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~~-lP~~i-~L~~L~~L~l~~s~-i~~lp 580 (584)
..|..+++|+.|+|++|. .|..++.++ +|++|++++|.+.. .|..+ ++.+|++|+|++|. +..+|
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred hhhhcCCCCCEEEeECCccCcccChhhcCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 467889999999999885 367788888 89999999998885 67777 89999999999997 77775
No 125
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.63 E-value=6e-05 Score=79.53 Aligned_cols=66 Identities=26% Similarity=0.326 Sum_probs=38.0
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|+++.+ |..+..++ +|++|+++++.+..+|.. + +|.+|++|+|++++|+.+|.
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence 4555666666666665532 23455555 566666666666666654 3 56666666666666655553
No 126
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.62 E-value=5.5e-05 Score=78.04 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=52.3
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|+++.+ |..++.++ +|++|+++++.+..+|..+ ++.+|++|+|+++++..++.
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 5678888888888888743 34567777 8888888888888888874 78888888888888887754
No 127
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.61 E-value=4.7e-05 Score=76.74 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=52.6
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|+++.+ |..+..++ +|++|++++|++..+|..+ ++.+|++|+|++++|+.+|.
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccCh
Confidence 5677888888888888743 23577777 8888888888888888888 88888888888888888764
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.61 E-value=0.00017 Score=66.89 Aligned_cols=59 Identities=12% Similarity=-0.024 Sum_probs=39.1
Q ss_pred cccccch----hhHHHHHHHhhhcCCc--eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 175 EHLVGID----SHLKNLRLLMDKECNV--VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 175 ~~~vGR~----~~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+.|++.+ ..++.+.+++...... .+.+.|+|++|+|||+||+.+++..........++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456544 2344555555533222 268899999999999999999997755544555554
No 129
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.61 E-value=5.4e-05 Score=82.28 Aligned_cols=64 Identities=11% Similarity=0.199 Sum_probs=49.8
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++||+|+|+++.+ |..+..++ +|++|++++++++.+|.. .+.+|++|+|++|++..+|
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCC
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCC-CCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccC
Confidence 5677888888888887753 55677777 788888888888888877 7888888888888877765
No 130
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.58 E-value=4.7e-05 Score=74.11 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=57.6
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCCCCCCceE
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNFQPDKIVE 568 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~ 568 (584)
...++.+.+.... +..+ ..+..+++|+.|+|++|.+.. .+..++ +|++|++++|+++.+|.... .+|++
T Consensus 40 l~~L~~L~l~~n~------i~~l-~~l~~l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~~l~~~~~-~~L~~ 110 (263)
T 1xeu_A 40 LSGVQNFNGDNSN------IQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLKNLNGIPS-ACLSR 110 (263)
T ss_dssp HTTCSEEECTTSC------CCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCSCCTTCCC-SSCCE
T ss_pred cCcCcEEECcCCC------cccc-hHHhhCCCCCEEECCCCccCCChhhccCC-CCCEEECCCCccCCcCcccc-CcccE
Confidence 4555666555441 2222 257788888999998885432 267777 88899999888888886556 88999
Q ss_pred EEcCCCCccccC
Q 035646 569 LNMRYSRIEQMW 580 (584)
Q Consensus 569 L~l~~s~i~~lp 580 (584)
|+|++|+|+.+|
T Consensus 111 L~L~~N~l~~~~ 122 (263)
T 1xeu_A 111 LFLDNNELRDTD 122 (263)
T ss_dssp EECCSSCCSBSG
T ss_pred EEccCCccCCCh
Confidence 999988888765
No 131
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.58 E-value=0.00013 Score=72.85 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=44.2
Q ss_pred cccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 516 SFLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
.|..+++|+.|+|++|.+.. .+..++ +|++|++++|.+..+|. + ++.+|++|+|++|++..+|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTPLAGLS-NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGGGTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred hhcCCCCCCEEECCCCCCCCchhhcCCC-CCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh
Confidence 46667777777777764422 356666 77777777777777776 6 7777888888777777665
No 132
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.57 E-value=4.8e-05 Score=77.40 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=41.1
Q ss_pred ccccccccccEEEecCccC---CCC-ccccccCeeEEEecCCCCCCCCC--CC-CCCCceEEEcCCC-CccccC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PEG-LEYLSNELRLLERHGYPLRSLPS--NF-QPDKIVELNMRYS-RIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~~-i~~l~~~LryL~l~~~~l~~lP~--~i-~L~~L~~L~l~~s-~i~~lp 580 (584)
..|..+++|+.|+|+++.+ |.. ++.++ +|++|++++++++.+|. .+ ++.+|++|+|+++ .+..++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 4566667777777766643 322 45565 67777777777777776 45 6777777777776 355553
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.57 E-value=0.00012 Score=67.49 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=52.2
Q ss_pred cccEEEecCccC---CC--CccccccCeeEEEecCCCCCCC-CCCC-CCCCceEEEcCCCCccccCCC
Q 035646 522 NLRMLLIRNLQL---PE--GLEYLSNELRLLERHGYPLRSL-PSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 522 ~LrvL~L~~~~l---p~--~i~~l~~~LryL~l~~~~l~~l-P~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
+|+.|+|+++.+ +. .+..++ +|++|+++++.++.+ |..| ++.+|++|+|++++|+.+|..
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence 899999999854 43 378888 999999999999999 5678 999999999999999988754
No 134
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.56 E-value=8e-05 Score=74.58 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=32.9
Q ss_pred ccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 519 KMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 519 ~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
.+++|++|+|++|.+.. ....++ +|++|++++|.+..+|+.+ .+.+|++|+|++++|+.+|.
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred ccCcCCEEECCCCcCcccccccccc-cCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 45555666665553321 112243 5555555555555555555 55556666665555555554
No 135
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.56 E-value=6.9e-05 Score=82.13 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=52.4
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|++|.+ |..++.++ +|++|++++|.+..+|..+ ++.+|++|+|++|.+..+|.
T Consensus 93 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred HHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 5778888888888888743 33567777 8888888888888888874 78888888888888887764
No 136
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.55 E-value=9.6e-05 Score=72.64 Aligned_cols=64 Identities=23% Similarity=0.407 Sum_probs=34.1
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~l 579 (584)
..|..+++|+.|+|+++.+ |. .+..++ +|++|+++++.+..+|.. + ++.+|++|+|+++.+..+
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 3455555555555555532 21 244454 555666655555555553 4 555666666666555544
No 137
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.54 E-value=0.0001 Score=80.78 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=56.6
Q ss_pred cccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCC
Q 035646 514 SNSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 514 ~~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
+..|..+++|++|+|++|.+ |..+..++ +|++|+|++++|..+|+. + +|.+|++|||++++|..+|.
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCC-CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 36788899999999998853 56788888 899999999999999875 5 89999999999999988864
No 138
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.53 E-value=0.00018 Score=77.94 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=29.1
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPS-NF-QPDKIVELNMRYSRIE 577 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~-~i-~L~~L~~L~l~~s~i~ 577 (584)
..|.++++||+|+|+++.+ |..+..++ +|++|+++++.++.+|. .+ ++.+|++|+|++|.++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred ccccCchhCCEEeCcCCcCCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCCccc
Confidence 3445555555555555422 23344444 45555554444444443 23 4444444444444444
No 139
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00034 Score=78.82 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=82.2
Q ss_pred ccccccchhhHHHHHHHhhhcC-------CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHH
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC-------NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTS 246 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~ 246 (584)
...++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+. ...........
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~- 567 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS- 567 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC-
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc-
Confidence 5678999999998888776332 12347999999999999999999987633222333333 22221111110
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCC--HHHHHHHhcCCCC-----------CCCCcEEE
Q 035646 247 LQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVD--IKQLECLAGKREW-----------FGPGSRIV 312 (584)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~-----------~~~gs~Ii 312 (584)
...+...+ +...-+|+||+++. .+....|+..+.. .....+||
T Consensus 568 -----------------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 568 -----------------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp --------------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred -----------------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 01111222 23445999999963 3333333322211 12356888
Q ss_pred EEccccch---------hh------ccccceEeecCCCCHHHHHHHhc
Q 035646 313 ITSRDKHL---------LM------MHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 313 iTTR~~~v---------~~------~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
+||....- .. ......++.+.+++.++..+++.
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~ 672 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVS 672 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHH
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHH
Confidence 88873110 00 01233578899999888877764
No 140
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.51 E-value=0.0001 Score=78.14 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=35.2
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~l 579 (584)
..|..+++|+.|+|+++.+ |..+..++ +|++|+++++.++.+|.. | ++.+|++|+|+++++..+
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence 4455555666666655532 44455555 566666655555555554 3 555555555555555544
No 141
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.51 E-value=0.00013 Score=75.22 Aligned_cols=65 Identities=18% Similarity=0.348 Sum_probs=48.7
Q ss_pred ccccccccccEEEecCcc---CCCC-ccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPEG-LEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~~-i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++|+.|+|+++. +|.. +..++ +|++|+++++++..+|.. + ++.+|++|+|++++++.++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 567788888888888774 4544 36676 788888888888877654 5 7888888888888877654
No 142
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.50 E-value=5.4e-05 Score=81.30 Aligned_cols=62 Identities=16% Similarity=0.350 Sum_probs=31.6
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~ 578 (584)
..|..+++||+|+|+++.+ |..++.++ +|++|+++++.++.+|.. .+.+|++|+|++|++..
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS
T ss_pred hhccccccccEEecCCCccCCcChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCcccc
Confidence 3445555555555555432 33444454 555555555555555555 55555555555555543
No 143
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.49 E-value=0.00027 Score=68.99 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=39.6
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCC--CCCCC-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRS--LPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~--lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++|+.|+|.++.+ +. .++.++ +|++|+++++.+.. +|..+ ++.+|++|+|++++++.+|
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 4455666666666665532 22 455555 66677776666665 55666 6677777777776666654
No 144
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.48 E-value=0.00015 Score=71.24 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=62.6
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCcc----C-CCCccccccCeeEEEecCCCCCCCCC-CC-CC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ----L-PEGLEYLSNELRLLERHGYPLRSLPS-NF-QP 563 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~----l-p~~i~~l~~~LryL~l~~~~l~~lP~-~i-~L 563 (584)
...++.+.+.... -..+. +..|..+++|+.|+|+++. + |..+..++ +|++|+++++.+..+|. .+ ++
T Consensus 55 ~~~L~~L~l~~n~---l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 55 CRNLTILWLHSNV---LARID--AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp CTTCCEEECCSSC---CCEEC--TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCCEEECCCCc---cceeC--HhhcCCccCCCEEeCCCCCCccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCC
Confidence 4556666655431 11222 2678888999999998874 2 45677787 89999999999888854 46 79
Q ss_pred CCceEEEcCCCCccccCCC
Q 035646 564 DKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 564 ~~L~~L~l~~s~i~~lp~~ 582 (584)
.+|++|+|+++++..+|..
T Consensus 129 ~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TTCCEEECCSSCCCCCCTT
T ss_pred cCCCEEECCCCcccccCHh
Confidence 9999999999998888753
No 145
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.48 E-value=0.00024 Score=70.14 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=25.6
Q ss_pred ccccccccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccc
Q 035646 517 FLKMINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~l 579 (584)
+..+++|+.|+|++|.+. ..+..++ +|++|++++|.+..+|. + ++.+|++|+|++|.|+.+
T Consensus 130 l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDITVLSRLT-KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred hcCCCCCCEEEccCCcCCcchhhccCC-CCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 334444444444444221 1233333 44444444444444443 3 444444444444444433
No 146
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.48 E-value=0.0001 Score=77.41 Aligned_cols=58 Identities=28% Similarity=0.458 Sum_probs=27.6
Q ss_pred ccccccccccEEEecCcc---CCC-CccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCC
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPE-GLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRY 573 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~-~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~ 573 (584)
..|..+++|+.|+|+++. +|. .+..++ +|++|+++++++..+|.. | ++.+|++|+|++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 344455555555555442 222 344444 455555555555555442 3 455555555554
No 147
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.47 E-value=6.4e-05 Score=83.00 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=53.1
Q ss_pred cccccc--ccccccEEEecCc----cCCCCccccccCeeEEEecCCC-CC--CCCCCC-CC------CCceEEEcCCCCc
Q 035646 513 SSNSFL--KMINLRMLLIRNL----QLPEGLEYLSNELRLLERHGYP-LR--SLPSNF-QP------DKIVELNMRYSRI 576 (584)
Q Consensus 513 ~~~~~~--~~~~LrvL~L~~~----~lp~~i~~l~~~LryL~l~~~~-l~--~lP~~i-~L------~~L~~L~l~~s~i 576 (584)
+|..+. ++++|++|+|++| .+|..++.++ +|++|++++|+ ++ .+|..+ +| .+|++|+|++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 456666 8888888888877 3677788887 88888888887 77 488877 66 8888888888888
Q ss_pred cccCC
Q 035646 577 EQMWC 581 (584)
Q Consensus 577 ~~lp~ 581 (584)
+.+|.
T Consensus 318 ~~ip~ 322 (636)
T 4eco_A 318 KTFPV 322 (636)
T ss_dssp SSCCC
T ss_pred CccCc
Confidence 88876
No 148
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.47 E-value=0.00011 Score=74.94 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=57.6
Q ss_pred cccc-ccccccEEEecCccC---C-CCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCC
Q 035646 515 NSFL-KMINLRMLLIRNLQL---P-EGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~-~~~~LrvL~L~~~~l---p-~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|. .+++|+.|+|+++.+ + ..+..++ +|++|+|+++.++.+|.. | +|.+|++|+|++++|..++.
T Consensus 57 ~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred hhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence 5566 899999999999854 3 4688888 999999999999999986 5 89999999999999998853
No 149
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.47 E-value=0.0001 Score=79.93 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=66.6
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCC-CC-CCCC
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPS-NF-QPDK 565 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~-~i-~L~~ 565 (584)
..++.+.+....- ..+.. ..|..+++|++|+|++|.+ |..+..++ +||+|+++++++..+|+ .| ++.+
T Consensus 28 ~~l~~L~Ls~n~l---~~~~~--~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPL---RHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCC---CEECT--TTTTTCSSCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCcc---CccCh--hHhhCCCCceEEECCCCcCCccCcccccCch-hCCEEeCcCCcCCccCHhhhcCccc
Confidence 3566666554421 12222 6789999999999999854 45688888 99999999999999984 57 9999
Q ss_pred ceEEEcCCCCccccCC
Q 035646 566 IVELNMRYSRIEQMWC 581 (584)
Q Consensus 566 L~~L~l~~s~i~~lp~ 581 (584)
|++|+|++++++.+|.
T Consensus 102 L~~L~L~~n~l~~l~~ 117 (570)
T 2z63_A 102 LQKLVAVETNLASLEN 117 (570)
T ss_dssp CCEEECTTSCCCCSTT
T ss_pred cccccccccccccCCC
Confidence 9999999999999876
No 150
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=0.00013 Score=83.00 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=29.1
Q ss_pred cccccccccEEEecCc---cCCCCccccccCeeEEEecCCCCCCCCCCC-CCCC-ceEEEcCCCCccccC
Q 035646 516 SFLKMINLRMLLIRNL---QLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDK-IVELNMRYSRIEQMW 580 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~-L~~L~l~~s~i~~lp 580 (584)
.|.++++|+.|+|++| .+| .++.++ +|++|++++|.+..+|..+ ++.+ |++|+|++|.+..+|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~-~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNV-KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTS-EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCC-cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc
Confidence 3444444444444444 233 344444 4444444444444444444 4444 444444444444444
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.45 E-value=0.00018 Score=65.19 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=62.6
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCCCCCC--CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSLPSNF--QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~lP~~i--~L~ 564 (584)
...++.+.+....- ..+.. ..|..+++|+.|+|+++.+ |. .+..++ +|++|+++++.+..+|..+ ++.
T Consensus 51 l~~L~~L~l~~n~l---~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~ 124 (177)
T 2o6r_A 51 LTQLTKLSLSQNQI---QSLPD--GVFDKLTKLTILYLHENKLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLT 124 (177)
T ss_dssp CTTCSEEECCSSCC---CCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cccccEEECCCCcc---eEeCh--hHccCCCccCEEECCCCCccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCc
Confidence 45566666654411 12222 5688999999999999853 44 357787 9999999999999999985 799
Q ss_pred CceEEEcCCCCccc
Q 035646 565 KIVELNMRYSRIEQ 578 (584)
Q Consensus 565 ~L~~L~l~~s~i~~ 578 (584)
+|++|+|+++.+..
T Consensus 125 ~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 125 SLQKIWLHTNPWDC 138 (177)
T ss_dssp TCCEEECCSSCBCC
T ss_pred ccCEEEecCCCeec
Confidence 99999999998754
No 152
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.45 E-value=0.00028 Score=70.31 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=33.1
Q ss_pred ccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 517 FLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
+..+++|+.|+|++|.+.. .+..++ +|++|++++|.+..+|. + ++.+|++|+|++|++..+|
T Consensus 147 l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDLTPLANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred ccCCCCccEEEccCCcCCCChhhcCCC-CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence 4455555555555553321 144444 55666666555555554 4 5566666666666555543
No 153
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.45 E-value=0.00024 Score=67.83 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=37.8
Q ss_pred ccccccccccEEEecCcc---CCCCccccccCee---EEEecCC-CCCCCCCC-C-CCCCce-EEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPEGLEYLSNELR---LLERHGY-PLRSLPSN-F-QPDKIV-ELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~~i~~l~~~Lr---yL~l~~~-~l~~lP~~-i-~L~~L~-~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|+++. +|. +..+. +|+ +|+++++ .++.+|.. + ++.+|+ +|+|++++++.+|.+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 345555666666665542 333 34443 444 6666666 66666654 4 566666 666666666666643
No 154
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.45 E-value=0.00026 Score=69.96 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=59.9
Q ss_pred ccceeEEEeccCcccccccccccccccccccccccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC-CCCCc
Q 035646 490 GTKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF-QPDKI 566 (584)
Q Consensus 490 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L 566 (584)
....++.+.+.... +..+ ..+..+++|+.|+|++|.+. ..+..++ +|++|++++|.+..+ +.+ ++.+|
T Consensus 88 ~l~~L~~L~l~~n~------l~~~-~~l~~l~~L~~L~L~~n~i~~~~~l~~l~-~L~~L~l~~n~l~~~-~~l~~l~~L 158 (291)
T 1h6t_A 88 NLKNLGWLFLDENK------VKDL-SSLKDLKKLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKITDI-TVLSRLTKL 158 (291)
T ss_dssp TCTTCCEEECCSSC------CCCG-GGGTTCTTCCEEECTTSCCCCCGGGGGCT-TCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred cCCCCCEEECCCCc------CCCC-hhhccCCCCCEEECCCCcCCCChhhcCCC-CCCEEEccCCcCCcc-hhhccCCCC
Confidence 34555666555442 1111 34788889999999888653 3577777 899999999999888 456 89999
Q ss_pred eEEEcCCCCccccC
Q 035646 567 VELNMRYSRIEQMW 580 (584)
Q Consensus 567 ~~L~l~~s~i~~lp 580 (584)
++|+|++|+|..++
T Consensus 159 ~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 159 DTLSLEDNQISDIV 172 (291)
T ss_dssp SEEECCSSCCCCCG
T ss_pred CEEEccCCccccch
Confidence 99999999888775
No 155
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.44 E-value=0.00016 Score=79.24 Aligned_cols=84 Identities=15% Similarity=0.270 Sum_probs=60.3
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCcc---CCCC-ccccccCeeEEEecCCCCCCCCCC-C-CCC
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ---LPEG-LEYLSNELRLLERHGYPLRSLPSN-F-QPD 564 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~---lp~~-i~~l~~~LryL~l~~~~l~~lP~~-i-~L~ 564 (584)
...++.+.+....- ..+. +..|..+++|++|+|++|. +|.. ++.++ +|++|++++|.+..+|+. | ++.
T Consensus 98 l~~L~~L~L~~n~l---~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 98 AHTIQKLYMGFNAI---RYLP--PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp CTTCCEEECCSSCC---CCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCT
T ss_pred CCCCCEEECCCCcC---CCCC--HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCC
Confidence 45566665554421 1122 2567888899999998874 4554 46777 899999999988888764 6 889
Q ss_pred CceEEEcCCCCccccC
Q 035646 565 KIVELNMRYSRIEQMW 580 (584)
Q Consensus 565 ~L~~L~l~~s~i~~lp 580 (584)
+|++|+|++|.+..+|
T Consensus 172 ~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TCCEEECTTSCCSBCC
T ss_pred cCcEEECcCCCCCCcC
Confidence 9999999998887765
No 156
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.43 E-value=0.00013 Score=77.67 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=41.8
Q ss_pred ccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCCC
Q 035646 519 KMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 519 ~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
.+++|+.|+|++|.+.. ....++ +|++|++++|.+..+|+.+ .+.+|++|+|++|.+..+|..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred hCCcccEEecCCCccccccccccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence 56777777777765421 222355 6777777777777777777 777777777777777776654
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.43 E-value=0.00017 Score=73.01 Aligned_cols=71 Identities=25% Similarity=0.307 Sum_probs=60.9
Q ss_pred ccccccccccccccEEEecC-cc---CC-CCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCCC
Q 035646 511 STSSNSFLKMINLRMLLIRN-LQ---LP-EGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 511 ~~~~~~~~~~~~LrvL~L~~-~~---lp-~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~~ 583 (584)
..+|. |..+++|+.|+|++ +. +| ..+..|+ +|++|+|+++.|+.+|+. | +|.+|++|+|++++|..+|.++
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 34556 88999999999996 64 34 4688898 999999999999999876 5 8999999999999999998753
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.42 E-value=0.0041 Score=59.74 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHHHhhhcC----------CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKEC----------NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++|.+..+.++.++...-. .-.+-+.|+|++|+||||||+.++....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 567888877777765543110 0112389999999999999999998764
No 159
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.41 E-value=0.00022 Score=78.67 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=40.3
Q ss_pred ccccccEEEecCcc---CCCCccccccCeeEEEecC------CC-CCCCCCCC-CCCCceEEEcCCCCccccCCC
Q 035646 519 KMINLRMLLIRNLQ---LPEGLEYLSNELRLLERHG------YP-LRSLPSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 519 ~~~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~------~~-l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
.+++|+.|+|++|. +|..+..++ +|++|++++ +. ...+|..+ ++.+|++|+|++|++..+|..
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCS-SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCC-CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence 66677777776653 456666666 677777643 32 44666666 677777777777777666654
No 160
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.41 E-value=0.00022 Score=70.81 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=39.7
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPS-NF-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~-~i-~L~~L~~L~l~~s~i~~l 579 (584)
..|..+++|+.|+|+++.+ |..+..++ +|++|+++++.+..+|. .+ ++.+|++|+|+++++...
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 5566666666666666632 44555565 66666666666666665 34 566666666666666554
No 161
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.41 E-value=0.00013 Score=71.38 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=32.6
Q ss_pred ccccccccEEEecCcc-----CCCCccccccCeeEEEecCCCCCCCCC-CC-CCCCce----EEEcCCCCccccCC
Q 035646 517 FLKMINLRMLLIRNLQ-----LPEGLEYLSNELRLLERHGYPLRSLPS-NF-QPDKIV----ELNMRYSRIEQMWC 581 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~-----lp~~i~~l~~~LryL~l~~~~l~~lP~-~i-~L~~L~----~L~l~~s~i~~lp~ 581 (584)
|..+++|+.|+|+++. +|..+..++ +|++|++++|.+..+|. .+ .+.+|+ +|+|+++.+..+|.
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred cccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 4555555555555542 344455554 55555555555555543 23 333333 55555555555543
No 162
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.41 E-value=0.00013 Score=76.77 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=43.4
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCcc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRIE 577 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i~ 577 (584)
..|..+++|++|+|++|.+ |..+..++ +|++|++++|+++.+|..+ .+.+|++|+|+++.+.
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 5567777777777777642 45666676 7777777777777777654 6777777777777654
No 163
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.40 E-value=0.0019 Score=68.35 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=91.4
Q ss_pred ccccccchhhHHHHHHHhhh--cC--------CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 174 LEHLVGIDSHLKNLRLLMDK--EC--------NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
...++|.+..++++.++... .. .-.+-+.|+|++|+|||+||+.++...... .+.+. ...+....
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~~- 104 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF- 104 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSSC-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHhh-
Confidence 36789999888887766531 10 112348999999999999999999876422 22232 11111100
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc----CCCcEEEEeCCCCH----------------HHHHHHhcCCC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR----HKKVLLIIDDVVDI----------------KQLECLAGKRE 303 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~----~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 303 (584)
.......+...++ ..+.++++|+++.. ..+..++..+.
T Consensus 105 ----------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 ----------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp ----------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred ----------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 0011112222222 24689999999421 12334433222
Q ss_pred CC--CCCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc----CCchh----HHHhhhhhhCCCHHHHHH
Q 035646 304 WF--GPGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC----GLPLA----LKVLGSFLYGKTTKEWES 368 (584)
Q Consensus 304 ~~--~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~----G~PLa----l~~~~~~L~~~~~~~w~~ 368 (584)
.+ ..+..|+.||..+..+.. ......+.++..+.++-.+++. +.|+. +..++....+....+.+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~ 242 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 242 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHH
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHH
Confidence 11 233455666666654321 1234578888888887777776 44443 333333333333345555
Q ss_pred HHHH
Q 035646 369 ALKR 372 (584)
Q Consensus 369 ~l~~ 372 (584)
+++.
T Consensus 243 lv~~ 246 (499)
T 2dhr_A 243 LLNE 246 (499)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 164
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=0.00031 Score=68.20 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=30.7
Q ss_pred ccccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccc
Q 035646 521 INLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 521 ~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~l 579 (584)
.+|+.|+|++|.+. ..+..++ +|++|++++|+++.+| .+ ++.+|++|+|++|+|..+
T Consensus 106 ~~L~~L~L~~N~l~~~~~l~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTDSLIHLK-NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCEEECCSSCCSBSGGGTTCT-TCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CcccEEEccCCccCCChhhcCcc-cccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 44555555554321 1344454 5666666666666655 34 566666666666655544
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00013 Score=64.40 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=26.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
...++|+|..|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 358999999999999999999986643211245554
No 166
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.39 E-value=0.00014 Score=76.48 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=43.6
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCC-CCCC--C-CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRS-LPSN--F-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~-lP~~--i-~L~~L~~L~l~~s~i~~l 579 (584)
..|..+++|++|+|+++.+ |..++.++ +|++|++++|.+.. +|.. + ++.+|++|+|+++++..+
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 5567777777777777642 55667776 77777777777764 3333 5 677777777777777666
No 167
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.39 E-value=0.00015 Score=72.26 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=17.5
Q ss_pred CeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccC
Q 035646 543 ELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 543 ~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp 580 (584)
+|++|++++|.++.+|..+. .+|++|||++++|+.+|
T Consensus 254 ~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp TCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCC
T ss_pred CCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCCh
Confidence 44444444444444444443 44444444444444443
No 168
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.39 E-value=0.00016 Score=71.71 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=56.4
Q ss_pred ccccccccccEEEecCcc-----CCCCccccccCeeEEEecCCCCCCC-CCCC-CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQ-----LPEGLEYLSNELRLLERHGYPLRSL-PSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~-----lp~~i~~l~~~LryL~l~~~~l~~l-P~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|.++. +|..+..++ +|++|++++|.+..+ |..+ ++.+|++|+|+++++..+|.
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 667888999999998873 577888888 899999999999988 5567 89999999999999988764
No 169
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.39 E-value=0.00016 Score=72.87 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=39.6
Q ss_pred ccccccccccEEEecCcc---CCCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccc
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~ 578 (584)
..|..+++|+.|+|+++. +|..+. .+|++|+++++.+..+|.. + ++.+|++|+|+++.++.
T Consensus 96 ~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp GGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred hHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 556667777777776663 343333 3677777777777777765 4 67777777777777653
No 170
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.37 E-value=0.00015 Score=79.42 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=49.2
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCC-CCCC-CCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSL-PSNF-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~l-P~~i-~L~~L~~L~l~~s~i~~l 579 (584)
..|.++++|+.|+|+++.+ |..++.++ +|++|++++|.+..+ |..+ ++.+|++|+|+++.+..+
T Consensus 75 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred hhccCccccCeeeCCCCcccccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 6677788888888877743 56777777 788888888888887 4666 788888888888887776
No 171
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.37 E-value=0.00011 Score=79.40 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=41.9
Q ss_pred ccccccccccEEEecCccC---CC-CccccccCeeEEEecCCCCCCC--CCCC-CCCCceEEEcCCCC-ccccC
Q 035646 515 NSFLKMINLRMLLIRNLQL---PE-GLEYLSNELRLLERHGYPLRSL--PSNF-QPDKIVELNMRYSR-IEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l---p~-~i~~l~~~LryL~l~~~~l~~l--P~~i-~L~~L~~L~l~~s~-i~~lp 580 (584)
..|..+++|++|+|+++.+ |. .++.++ +|++|++++|.+..+ |..+ ++.+|++|+|++++ +..+|
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 5566777777777776643 22 256666 677777777777643 5566 67777777777765 55554
No 172
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.35 E-value=0.00013 Score=82.37 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=43.5
Q ss_pred cccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccCCC
Q 035646 514 SNSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPDKIVELNMRYSRIE-QMWCG 582 (584)
Q Consensus 514 ~~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~~L~~L~l~~s~i~-~lp~~ 582 (584)
|..|..++.|++|+|++|. +|..++.|+ +|++|++++|++. .+|..+ +|..|++|||+++++. .+|.+
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 3556666667777776663 456666666 6777777777666 666666 6777777777776654 34443
No 173
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.00028 Score=80.25 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=44.8
Q ss_pred ccccc--ccccccEEEecCc---cCCCCccccccCeeEEEecC------CC-CCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 514 SNSFL--KMINLRMLLIRNL---QLPEGLEYLSNELRLLERHG------YP-LRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 514 ~~~~~--~~~~LrvL~L~~~---~lp~~i~~l~~~LryL~l~~------~~-l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
|..+. .+++|+.|+|++| .+|..++.++ +|+.|++++ |. ...+|..| ++.+|++|+|++|++..+|
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCccchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccC
Confidence 34444 6777777777766 3566666666 677777755 32 44667777 6777777777777777777
Q ss_pred CC
Q 035646 581 CG 582 (584)
Q Consensus 581 ~~ 582 (584)
.+
T Consensus 823 ~~ 824 (876)
T 4ecn_A 823 EK 824 (876)
T ss_dssp SC
T ss_pred Hh
Confidence 64
No 174
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.35 E-value=0.00024 Score=71.35 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=52.4
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|+++.+ |..+..++ +|++|++++++++.+|..+. .+|++|+|+++.+..+|.
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~ 138 (330)
T 1xku_A 70 GDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRK 138 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCH
T ss_pred hhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCH
Confidence 4678888888888888743 66788887 88899988888888888774 688888888888887754
No 175
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.35 E-value=0.00018 Score=79.96 Aligned_cols=65 Identities=12% Similarity=0.278 Sum_probs=47.8
Q ss_pred ccccccccccEEEecCcc---CCC-CccccccCeeEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQ---LPE-GLEYLSNELRLLERHGYPLRSLPS-NF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~---lp~-~i~~l~~~LryL~l~~~~l~~lP~-~i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|.++++||+|+|+++. +|. .++.++ +|++|++++|.+..+|+ .| ++.+|++|+|++|.+...+
T Consensus 67 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp THHHHCTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred HHHhcccCcCEEECCCCccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC
Confidence 567777888888887763 444 467776 78888888888877774 46 7888888888888776654
No 176
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=83.35 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=46.4
Q ss_pred ccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCCC-CCCC--C-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLRS-LPSN--F-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~~-lP~~--i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|.++++||+|+|++|. .|..++.++ +|++|++++|.+.. +|.. + +|.+|++|||++|++..++
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp TTTSSCTTCCEEECTTCCCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred HHhcCCCCCCEEECCCCcCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc
Confidence 667777777777777764 266777777 77778777777765 4554 6 7778888888877776653
No 177
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.35 E-value=0.00026 Score=71.82 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=29.2
Q ss_pred ccccccccEEEecCcc---CCC--CccccccCeeEEEecCC-CCCCCCC-CC-CCCCceEEEcCCCCcccc
Q 035646 517 FLKMINLRMLLIRNLQ---LPE--GLEYLSNELRLLERHGY-PLRSLPS-NF-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~---lp~--~i~~l~~~LryL~l~~~-~l~~lP~-~i-~L~~L~~L~l~~s~i~~l 579 (584)
|..+++|+.|+|+++. +|. .+..++ +|++|++++| .+..+|. .+ ++.+|++|+|+++++..+
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 4445555555555442 232 344444 5555555554 3444432 33 455555555555554443
No 178
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.34 E-value=0.00034 Score=76.48 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=42.0
Q ss_pred ccccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 515 NSFLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
..|..+++|+.|+|++|.+.. .+..++ +|++|+|++|+|..+|. + +|.+|+.|+|++|.+...|.
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCBCGG-GTTCTTCSEEECCSEEEECCCC
T ss_pred hhhcccCCCCEEECcCCcCCCchhhccCC-CCCEEECcCCCCCCChH-HccCCCCCEEEccCCcCcCCcc
Confidence 345666777777777664322 255565 67777777777777653 5 77777777777776666543
No 179
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.33 E-value=0.00033 Score=57.76 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=53.1
Q ss_pred CceeeEEEcCccCcccCchHHHHHHHHhhCCCcEEEeCCCCCCCCcccHHHHHHhhhcceEEEEeccCcccchhhHHHHH
Q 035646 16 HWKYDVFLSFRGEDTRKNFTDHLYSALDEKGIIVFRDDKELERGESISPGLFKAIEESKISIVVFSRSYAFSTWCLDELV 95 (584)
Q Consensus 16 ~~~~dvFis~~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~ 95 (584)
+.+|.+||||+.+| -.+.|...|...|+... | +.|+.|..+|++.++....|.||..|+.
T Consensus 2 ~~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 2 TAEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred CceEEEEEecccHh----HHHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 35899999999998 24455555545566432 2 6788999999999999999999999986
Q ss_pred HHHHHhhcCCCcEEEeee
Q 035646 96 HILECKNTNNQQMVYPIF 113 (584)
Q Consensus 96 ~~~~~~~~~~~~~v~Pvf 113 (584)
.+.+ .| ..++-|.
T Consensus 62 ~A~~----~g-kpIigV~ 74 (111)
T 1eiw_A 62 LARK----SS-KPIITVR 74 (111)
T ss_dssp HHTT----TT-CCEEEEC
T ss_pred HHHH----cC-CCEEEEE
Confidence 6553 33 4455553
No 180
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.32 E-value=0.00035 Score=73.68 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=46.8
Q ss_pred hcccCcccCCCcccccccccccchhhHHHHHHHhh---hcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 158 NISGWELKDMNESEFILEHLVGIDSHLKNLRLLMD---KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 158 ~~~g~~~~~~~~~~~i~~~~vGR~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.+.|..+.....+......++|.+..++.+..++. .+....+-+.++|++|+|||+||+.+++.....
T Consensus 20 ~i~~~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 20 HVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred cccCCCCCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 34444444333344445789999999887665554 232223568899999999999999999987543
No 181
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.32 E-value=0.0039 Score=60.87 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=36.5
Q ss_pred ccccccchhhHHHHHHHhhhcC----------CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC----------NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+.++|.+..++++.++...-. .-.+-+.|+|++|+||||||+.++....
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 4678999888777766543110 0112389999999999999999998764
No 182
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.32 E-value=0.00021 Score=72.21 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=51.7
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC-CCCCce
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIV 567 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~ 567 (584)
...++.+.+.... +...+. |..+++|+.|+|++|.+. ..+..++ +|++|++++|.+..+|. + ++.+|+
T Consensus 65 ~~~L~~L~l~~n~------i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~-~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 65 LTNLEYLNLNGNQ------ITDISP-LSNLVKLTNLYIGTNKITDISALQNLT-NLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp CTTCCEEECCSSC------CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCT-TCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred cCCccEEEccCCc------cccchh-hhcCCcCCEEEccCCcccCchHHcCCC-cCCEEECcCCcccCchh-hccCCcee
Confidence 4556666655441 112223 777888888888877542 2466676 78888888888888877 6 788888
Q ss_pred EEEcCCCC
Q 035646 568 ELNMRYSR 575 (584)
Q Consensus 568 ~L~l~~s~ 575 (584)
+|++++|.
T Consensus 136 ~L~l~~n~ 143 (347)
T 4fmz_A 136 SLNLGANH 143 (347)
T ss_dssp EEECTTCT
T ss_pred EEECCCCC
Confidence 88888874
No 183
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.31 E-value=0.00021 Score=68.20 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=39.6
Q ss_pred cccccccc---EEEecCc-cC---CC-CccccccCee-EEEecCCCCCCCCCCC-CCCCceEEEcCCCC-ccccCC
Q 035646 517 FLKMINLR---MLLIRNL-QL---PE-GLEYLSNELR-LLERHGYPLRSLPSNF-QPDKIVELNMRYSR-IEQMWC 581 (584)
Q Consensus 517 ~~~~~~Lr---vL~L~~~-~l---p~-~i~~l~~~Lr-yL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~-i~~lp~ 581 (584)
|..+.+|+ .|+|+++ .+ |. .+..++ +|+ +|+++++.++.+|... ...+|++|+|++++ ++.+|.
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence 45555555 7777666 32 32 355565 677 7777777777777665 55677777777773 666654
No 184
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.31 E-value=0.00034 Score=75.88 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=50.9
Q ss_pred ccccccccccEEEecCccCCC-CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQLPE-GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~lp~-~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|++|.+.. ....++.+|++|++++|.++.+|..+ ++.+|++|+|++++++.+|.+
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 345666777777777765532 12233248889999999999999988 899999999999999988875
No 185
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.30 E-value=0.00025 Score=77.60 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=39.3
Q ss_pred ccccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCC--CCCCCCCCceEEEcCCCCcccc
Q 035646 515 NSFLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSL--PSNFQPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~l--P~~i~L~~L~~L~l~~s~i~~l 579 (584)
..|..+++|+.|+|+++.+ |..++.++ +|++|++++|.+..+ |..+.+.+|++|+|+++.+..+
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred hhhcccccccEeeccccCcccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 4566666666666666643 33455565 666666666666665 3333666666666666666655
No 186
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.29 E-value=0.0027 Score=70.86 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=95.0
Q ss_pred ccccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
-+.+.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....| +.+. ...
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~~----- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPE----- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hHH-----
Confidence 35678999999998877642 112357899999999999999999998765443 2222 111
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcCCCcEEEEeCCCCH-------------HHHHHHhcCCCCC--CC
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLRHKKVLLIIDDVVDI-------------KQLECLAGKREWF--GP 307 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~ 307 (584)
+ ..... ..........+.......+.+|+||+++.. .....++..+... ..
T Consensus 274 --------l----~sk~~--gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 --------I----MSKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp --------H----HSSCT--THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred --------h----hcccc--hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 0 11000 001111122233334567999999999531 1122333222111 12
Q ss_pred CcEEEEEccccchhh-----ccccceEeecCCCCHHHHHHHhc----CCchh----HHHhhhhhhCCCHHHHH
Q 035646 308 GSRIVITSRDKHLLM-----MHGVDEIYNLRELHDDKALQLFC----GLPLA----LKVLGSFLYGKTTKEWE 367 (584)
Q Consensus 308 gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~----G~PLa----l~~~~~~L~~~~~~~w~ 367 (584)
+..||.||....... .......++++..+.++-.++|. +.|++ +..+|....+....+..
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH
Confidence 344555665543321 12355678999888888888887 44433 44455544444444433
No 187
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.29 E-value=0.00017 Score=81.54 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=60.9
Q ss_pred cccccccccccEEEecCcc----CCCCccccccCeeEEEecCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccCCC
Q 035646 514 SNSFLKMINLRMLLIRNLQ----LPEGLEYLSNELRLLERHGYPLR-SLPSNF-QPDKIVELNMRYSRIE-QMWCG 582 (584)
Q Consensus 514 ~~~~~~~~~LrvL~L~~~~----lp~~i~~l~~~LryL~l~~~~l~-~lP~~i-~L~~L~~L~l~~s~i~-~lp~~ 582 (584)
+..|..+++|+.|||+++. +|..++.++ +|++|+++++.+. .+|..| +|.+|++|||+++++. .+|..
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 4678889999999999984 688999998 9999999999998 899999 9999999999999988 55654
No 188
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.28 E-value=0.00038 Score=73.52 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=41.9
Q ss_pred ccccccccEEEecCccCCC-CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 517 FLKMINLRMLLIRNLQLPE-GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~lp~-~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
+..+++|+.|+|++|.+.. .++.++ +|++|++++|++..+| + ++.+|++|+|++++++.+|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~~~~l~-~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~ 143 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLDVTPLT-KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID 143 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCCCTTCT-TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC
T ss_pred cccCCCCCEEECcCCCCceeecCCCC-cCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec
Confidence 5667777777777764422 356666 7777777777777776 6 7777777777777776654
No 189
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.27 E-value=0.00023 Score=75.34 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=43.2
Q ss_pred ccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 517 FLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
|..+++|+.|+|+++.+.. .+..++ +|++|++++|.+..+|. + ++.+|++|+|++|++..+|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG
T ss_pred hhccccCCEEECCCCccccChhhcCCC-CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh
Confidence 6677777777777764322 256666 77777777777777776 6 7777777777777766654
No 190
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.26 E-value=8.4e-06 Score=75.74 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=41.4
Q ss_pred ccccccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCC--CC-CCCCceEEEcCCCCcccc
Q 035646 513 SSNSFLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPS--NF-QPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 513 ~~~~~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~--~i-~L~~L~~L~l~~s~i~~l 579 (584)
++..+..+++|+.|+|++|.+.. .+..++ +|++|++++|++..+|. .+ ++.+|++|+|++|.+...
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIASLSGIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCCHHHHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ccchhhcCCcCCEEECcCCcCCcCCccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 33555566677777777664322 455555 67777777777776664 45 677777777777766443
No 191
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.24 E-value=0.00047 Score=75.33 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=51.1
Q ss_pred ccccccccccEEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccC
Q 035646 515 NSFLKMINLRMLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp 580 (584)
..|..+++|+.|+|++|.+. ..++.++ +|++|+|++|.+..+|+ + +|.+|++|+|++|.|..+|
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDITVLSRLT-KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGSCT-TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred ccccCCCccCEEECCCCccCCchhhcccC-CCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 34777888888888888554 3566777 88899998888888877 7 8889999999998887775
No 192
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.24 E-value=0.00064 Score=71.55 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=9.8
Q ss_pred ccccccccccEEEecCc
Q 035646 515 NSFLKMINLRMLLIRNL 531 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~ 531 (584)
..|..+++|+.|+|+++
T Consensus 141 ~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNN 157 (452)
T ss_dssp TTSSSCTTCCEEECCSC
T ss_pred hhhcccCCCCEEECCCC
Confidence 34555666666666555
No 193
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.24 E-value=0.00058 Score=68.91 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=58.5
Q ss_pred cccceeEEEeccCcccccccccccccccccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCC
Q 035646 489 TGTKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDK 565 (584)
Q Consensus 489 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~ 565 (584)
.....++.+.+.... +..+ ..|..+++|+.|+|+++.+.. .+..++ +|++|++++|.....+..+ ++.+
T Consensus 85 ~~l~~L~~L~L~~n~------i~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~ 156 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNK------ITDI-SALQNLTNLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLSPLSNMTG 156 (347)
T ss_dssp TTCTTCCEEECCSSC------CCCC-GGGTTCTTCSEEECTTSCCCCCGGGTTCT-TCCEEECTTCTTCCCCGGGTTCTT
T ss_pred hcCCcCCEEEccCCc------ccCc-hHHcCCCcCCEEECcCCcccCchhhccCC-ceeEEECCCCCCcccccchhhCCC
Confidence 345666666665542 1111 357888999999998885432 366777 8999999998544444447 8999
Q ss_pred ceEEEcCCCCccccC
Q 035646 566 IVELNMRYSRIEQMW 580 (584)
Q Consensus 566 L~~L~l~~s~i~~lp 580 (584)
|++|++++|.+..++
T Consensus 157 L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 157 LNYLTVTESKVKDVT 171 (347)
T ss_dssp CCEEECCSSCCCCCG
T ss_pred CcEEEecCCCcCCch
Confidence 999999998887765
No 194
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.23 E-value=0.00029 Score=78.31 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=38.6
Q ss_pred cccccccccEEEecCcc---CC-CCccccccCeeEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccC
Q 035646 516 SFLKMINLRMLLIRNLQ---LP-EGLEYLSNELRLLERHGYPLRSLPS-NF-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~~---lp-~~i~~l~~~LryL~l~~~~l~~lP~-~i-~L~~L~~L~l~~s~i~~lp 580 (584)
.|..+++|+.|+|+++. +| ..++.++ +|++|++++|.+..+|. .+ ++.+|++|+|+++.++.++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccC-CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 46666666666666653 22 3455565 66666666666655543 34 6666666666666665554
No 195
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00036 Score=74.76 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=33.2
Q ss_pred ccccccccEEEecCccCCCC-ccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 517 FLKMINLRMLLIRNLQLPEG-LEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~lp~~-i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
|..+++|+.|+|++|.+... ...++.+|++|++++|.++.+|..+ ++.+|++|+|++|+++.+|.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~ 461 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCH
Confidence 44445555555555443211 1112125556666555555666555 56666666666665555554
No 196
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.21 E-value=0.00037 Score=75.15 Aligned_cols=61 Identities=18% Similarity=0.387 Sum_probs=28.6
Q ss_pred ccccccccEEEecCcc---CCCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc
Q 035646 517 FLKMINLRMLLIRNLQ---LPEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQM 579 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~l 579 (584)
|..+++|+.|+|++|. +|..+..++ +|++|++++|++..+|..+ +.+|++|+|++|+++.+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~-~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHPMPDSCQWPE-KMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp GGGCTTCCEEECTTCCCCCCCSCCCCCT-TCCEEECTTSCCSCCCTTS-CTTCSEEECCSSCCSCC
T ss_pred hhcCCCCCEEECCCCCCccCChhhcccc-cccEEECCCCCcccccchh-cCCceEEECCCCChhhh
Confidence 4444555555554442 344444444 4555555555555444443 13455555555554443
No 197
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.20 E-value=0.00024 Score=75.19 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=63.3
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccCCC--CccccccCeeEEEecCCCCCCCCCCC-CCCCceE
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPE--GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVE 568 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~--~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~ 568 (584)
..++.+.+.... +..+ ..+..+++||+|+|++|.+.. .+..++ +|++|++++|.+..+|. + ++.+|++
T Consensus 46 ~~l~~L~l~~~~------i~~l-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLG------IKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLT-KLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSC------CCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred ccccEEecCCCC------CccC-cchhhhcCCCEEECCCCccCCchhhhccc-cCCEEECCCCccccChh-hcCCCCCCE
Confidence 455666655442 1122 247889999999999985432 277887 99999999999999998 8 9999999
Q ss_pred EEcCCCCccccCC
Q 035646 569 LNMRYSRIEQMWC 581 (584)
Q Consensus 569 L~l~~s~i~~lp~ 581 (584)
|+|++|+++.+|.
T Consensus 117 L~L~~n~l~~~~~ 129 (466)
T 1o6v_A 117 LTLFNNQITDIDP 129 (466)
T ss_dssp EECCSSCCCCCGG
T ss_pred EECCCCCCCCChH
Confidence 9999999988863
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.20 E-value=0.001 Score=74.89 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=40.0
Q ss_pred ccccccchhhHHHHHHHhhhcC-------CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKEC-------NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...++|.+..++.+...+.... .....+.++|++|+|||++|+.+++...
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5678999999988887775321 1235799999999999999999998773
No 199
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.17 E-value=0.00035 Score=69.64 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=53.9
Q ss_pred ccccccccEEEecCccCCC-------CccccccCeeEEEecCCCCCCCC--CCC-CCCCceEEEcCCCCccccCCCC
Q 035646 517 FLKMINLRMLLIRNLQLPE-------GLEYLSNELRLLERHGYPLRSLP--SNF-QPDKIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~lp~-------~i~~l~~~LryL~l~~~~l~~lP--~~i-~L~~L~~L~l~~s~i~~lp~~~ 583 (584)
|..+++|+.|+|++|.+.. .+..++ +|++|+++++.+...+ ..+ .+.+|++|+|++++|+.+|.++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence 4789999999999987652 123445 8999999999999876 345 7999999999999999999864
No 200
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.16 E-value=0.009 Score=58.19 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=75.8
Q ss_pred cccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.++..++|...+.. +-.-.+-++|+|++|+||||||+.++...... .+.+. ...+... .
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~-~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM-Y 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS-T
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh-h
Confidence 3456666666666554320 00111229999999999999999999865432 23332 1111000 0
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCHH-------------HHHHHhcCCCC--CCC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDIK-------------QLECLAGKREW--FGP 307 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~ 307 (584)
... ....+..+.+.. ...+.++++|+++... ....+...+.. ...
T Consensus 85 ~~~-------------------~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 85 VGE-------------------SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp THH-------------------HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred hhH-------------------HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 000 011122222222 3467899999996420 11222221111 112
Q ss_pred CcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 308 GSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 308 gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..-++.+|..+.+... ......+.++..+.++-.+++.
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 3445667766655322 1355678888888888877775
No 201
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.16 E-value=0.0013 Score=64.91 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.+.+.++|++|+|||+||+.+++.....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5688899999999999999999987443
No 202
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.13 E-value=0.00027 Score=70.36 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=47.4
Q ss_pred ccccccccEEEecCccC----CCCccccc--cCeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccCC
Q 035646 517 FLKMINLRMLLIRNLQL----PEGLEYLS--NELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~l----p~~i~~l~--~~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp~ 581 (584)
+..+++|+.|+|++|.+ |..+..+. .+|++|++++|+++.+|..+. .+|++|||++++|+.+|.
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch
Confidence 56778888888888743 44555552 378888888888888888774 688888888888877653
No 203
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.12 E-value=0.0011 Score=72.52 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=19.7
Q ss_pred CeeEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccCC
Q 035646 543 ELRLLERHGYPLRSLPSNFQPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 543 ~LryL~l~~~~l~~lP~~i~L~~L~~L~l~~s~i~~lp~ 581 (584)
+|++|++++|.++.+|..+ .+|++|+|++|++..+|.
T Consensus 122 ~L~~L~L~~N~l~~lp~~l--~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 122 GLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQLASLPA 158 (622)
T ss_dssp TCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSCCCC
T ss_pred CcCEEECCCCCCCcCCCCC--CCCCEEECcCCcCCCcCC
Confidence 4444444444444444432 556666666666666554
No 204
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.12 E-value=0.00014 Score=72.46 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=53.5
Q ss_pred cccccccccEEEecCccCC---CC----ccccccCeeEEEecCCCCCCC-CCCC-CC---CCceEEEcCCCCccccCCCC
Q 035646 516 SFLKMINLRMLLIRNLQLP---EG----LEYLSNELRLLERHGYPLRSL-PSNF-QP---DKIVELNMRYSRIEQMWCGI 583 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~~lp---~~----i~~l~~~LryL~l~~~~l~~l-P~~i-~L---~~L~~L~l~~s~i~~lp~~~ 583 (584)
.+..+++|+.|+|++|.+. .. +..++ +|++|+++++.+..+ |+.+ .+ .+|++|+|++|+|+.+|.++
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence 3467888888888888763 21 34556 899999999999988 8887 65 69999999999999998864
No 205
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.11 E-value=0.00037 Score=73.55 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccCCC-CccccccCeeEEEecCCCCCCCCCCC-CCCCceE
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPE-GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVE 568 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~-~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~ 568 (584)
...++.+.+.... +...| .|..+++|++|+|+++.+.. .++.++ +|++|++++|.+..+| + ++.+|++
T Consensus 41 l~~L~~L~Ls~n~------l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSS------ITDMT-GIEKLTGLTKLICTSNNITTLDLSQNT-NLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSC------CCCCT-TGGGCTTCSEEECCSSCCSCCCCTTCT-TCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCC------cccCh-hhcccCCCCEEEccCCcCCeEccccCC-CCCEEECcCCCCceee--cCCCCcCCE
Confidence 3566666665541 22222 58899999999999986533 377787 9999999999999987 8 9999999
Q ss_pred EEcCCCCccccC
Q 035646 569 LNMRYSRIEQMW 580 (584)
Q Consensus 569 L~l~~s~i~~lp 580 (584)
|+|++++++.+|
T Consensus 111 L~L~~N~l~~l~ 122 (457)
T 3bz5_A 111 LNCDTNKLTKLD 122 (457)
T ss_dssp EECCSSCCSCCC
T ss_pred EECCCCcCCeec
Confidence 999999998876
No 206
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.10 E-value=0.0032 Score=71.01 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=83.9
Q ss_pred ccccccchhhHHHHHHHhhh-----------cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDK-----------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
-..++|.+..+++|.+++.. +-.....|.|+|++|+||||||+.++......| +.+. ....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l---- 274 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEI---- 274 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHh----
Confidence 36689999999999888763 112346799999999999999999998764433 2222 1111
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhh-hHHHHHHHHcCCCcEEEEeCCCCH----------------HHHHHHhcCCCCC
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYD-GINIIGRRLRHKKVLLIIDDVVDI----------------KQLECLAGKREWF 305 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 305 (584)
... ....... ....+.......+.++++|+++.. ..+-.+..... .
T Consensus 275 -------------~~~---~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~ 337 (806)
T 1ypw_A 275 -------------MSK---LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-Q 337 (806)
T ss_dssp -------------SSS---STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-T
T ss_pred -------------hhh---hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-c
Confidence 000 0001111 122233333457889999999311 11222222221 1
Q ss_pred CCCcEEEEEccccchhh----c-cccceEeecCCCCHHHHHHHhc
Q 035646 306 GPGSRIVITSRDKHLLM----M-HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~~gs~IiiTTR~~~v~~----~-~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
..+..+|.||....... . ......+.+...+.++-.+++.
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 382 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHH
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHH
Confidence 23445666665543221 1 1233567888888888888876
No 207
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.07 E-value=0.00056 Score=71.70 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=27.7
Q ss_pred ccccccccEEEecCccC----CCCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccC
Q 035646 517 FLKMINLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMW 580 (584)
Q Consensus 517 ~~~~~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp 580 (584)
+..+++|+.|+|++|.+ |..+..++ +|++|+++++.+..++.. | ++.+|++|+|++++++.+|
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 33444444444444421 33344444 444444444444444332 2 4444444444444444444
No 208
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.05 E-value=0.0025 Score=64.33 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=56.8
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCC--
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPN-- 260 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~-- 260 (584)
...|...|. .+=....++.|+|++|+||||||.+++......-..++|+. ........ .+..+.-...
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId----~E~s~~~~-----ra~rlgv~~~~l 116 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID----AEHALDPV-----YAKNLGVDLKSL 116 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCHH-----HHHHHTCCGGGC
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cccccchH-----HHHHcCCchhhh
Confidence 456666665 22223479999999999999999999986654334466775 12222221 2333211100
Q ss_pred --CCCcChhhhHHHHHHHHc-CCCcEEEEeCCC
Q 035646 261 --NGIWNVYDGINIIGRRLR-HKKVLLIIDDVV 290 (584)
Q Consensus 261 --~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~ 290 (584)
....+.++....+...++ .+.-++|+|.+.
T Consensus 117 ~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 117 LISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp EEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 112334444555555443 567799999883
No 209
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.04 E-value=0.0014 Score=61.43 Aligned_cols=45 Identities=18% Similarity=-0.019 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 186 NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 186 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
.|..++..+=....+++|.|.+|+||||||..++. ..-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 44445532222235899999999999999999987 2223566665
No 210
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.04 E-value=0.0011 Score=69.83 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=57.7
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEE
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELN 570 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~ 570 (584)
..++.+.+.... +..+| .|..+++|+.|+++++.+.. +.....+|++|++++|.+..+| .+ ++.+|++|+
T Consensus 131 ~~L~~L~L~~n~------l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQ------LEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSC------CSSCC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCC------CCCCc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCc-cccCCCCCCEEE
Confidence 355555554431 22233 48889999999999886542 2222238889999999988888 57 889999999
Q ss_pred cCCCCccccCCC
Q 035646 571 MRYSRIEQMWCG 582 (584)
Q Consensus 571 l~~s~i~~lp~~ 582 (584)
+++|++..+|..
T Consensus 202 l~~N~l~~l~~~ 213 (454)
T 1jl5_A 202 ADNNSLKKLPDL 213 (454)
T ss_dssp CCSSCCSSCCCC
T ss_pred CCCCcCCcCCCC
Confidence 888888877753
No 211
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.04 E-value=0.00035 Score=74.45 Aligned_cols=85 Identities=12% Similarity=-0.015 Sum_probs=65.6
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccC----CCCcc-ccccCeeEEEecCCCCCCCCCCCCCCCc
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQL----PEGLE-YLSNELRLLERHGYPLRSLPSNFQPDKI 566 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l----p~~i~-~l~~~LryL~l~~~~l~~lP~~i~L~~L 566 (584)
..++.+.+....-. .+ .+..|..+++|+.|+|++|.+ |..+. .++ +|++|++++|.+..+|....+.+|
T Consensus 120 ~~L~~L~L~~N~l~---~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~L 193 (487)
T 3oja_A 120 QGKKNIYLANNKIT---ML--RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKGQVVFAKL 193 (487)
T ss_dssp SSCEEEECCSSCCC---SG--GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEECCCCCTTC
T ss_pred CCCCEEECCCCCCC---CC--CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccccccccccCCCC
Confidence 44566655544211 11 236788899999999999864 44554 577 999999999999999887799999
Q ss_pred eEEEcCCCCccccCCC
Q 035646 567 VELNMRYSRIEQMWCG 582 (584)
Q Consensus 567 ~~L~l~~s~i~~lp~~ 582 (584)
++|+|++|.+..+|.+
T Consensus 194 ~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 194 KTLDLSSNKLAFMGPE 209 (487)
T ss_dssp CEEECCSSCCCEECGG
T ss_pred CEEECCCCCCCCCCHh
Confidence 9999999999998764
No 212
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.03 E-value=0.00047 Score=68.87 Aligned_cols=58 Identities=7% Similarity=0.136 Sum_probs=53.2
Q ss_pred ccccccEEEecCcc---CCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcc
Q 035646 519 KMINLRMLLIRNLQ---LPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIE 577 (584)
Q Consensus 519 ~~~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~ 577 (584)
.+++|+.|+|++|. +|..+..++ +|++|++++|++..+|..+ .+.+|++|+|+++.+.
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGT-TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccCCEEECCCCcCCcchhhhcccC-cccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 48999999999985 566788888 9999999999999999999 9999999999999887
No 213
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.00064 Score=72.00 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=54.3
Q ss_pred ccccEEEecCccC----CCCccccccCeeEEEecCCCCCCC-CCCC-CCCCceEEEcCCCCccccCCC
Q 035646 521 INLRMLLIRNLQL----PEGLEYLSNELRLLERHGYPLRSL-PSNF-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 521 ~~LrvL~L~~~~l----p~~i~~l~~~LryL~l~~~~l~~l-P~~i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
++|++|+|+++.+ |..+..++ +|++|+++++.+..+ |..| ++.+|++|+|++++++.+|.+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCcEEECCCCccceECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 5899999999854 46788888 999999999999988 6678 999999999999999999865
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.96 E-value=0.0014 Score=70.54 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=38.4
Q ss_pred ccccccchhhHHHHHHHhhh----cCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDK----ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...++|.++..+.+...+.. .......+.|+|++|+||||||+.++......
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 56688988877777554431 11134689999999999999999999876443
No 215
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.90 E-value=0.0016 Score=70.53 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=15.3
Q ss_pred eEEEecCCCCCCCCCCC-CCCCceEEEcCCCCc
Q 035646 545 RLLERHGYPLRSLPSNF-QPDKIVELNMRYSRI 576 (584)
Q Consensus 545 ryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i 576 (584)
++|++++|+|+.+|..+ ++.+|++|+|++|.+
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred eEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 44444444444444444 444444444444444
No 216
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.88 E-value=0.0012 Score=65.24 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=44.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
.+++.|+|++|+|||+||.+++.. .-..+.|+..- ..+..+ . ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~--~eE~v~--------------~---~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVR--FGEPLS--------------G---YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEE--BSCSST--------------T---CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEec--chhhhh--------------h---hhcCHHHHHHHHHHHH
Confidence 357789999999999999999986 22234555420 011100 0 0023444455566666
Q ss_pred cCCCcEEEEeCCCC
Q 035646 278 RHKKVLLIIDDVVD 291 (584)
Q Consensus 278 ~~k~~LlVlDdv~~ 291 (584)
...+ ++|+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 6666 999999954
No 217
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.85 E-value=0.0014 Score=71.67 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=58.7
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccCCCCccccccCeeEEEecCCCCCCCCCCCCCCCceEEEc
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPEGLEYLSNELRLLERHGYPLRSLPSNFQPDKIVELNM 571 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~~i~~l~~~LryL~l~~~~l~~lP~~i~L~~L~~L~l 571 (584)
..++.+.+..+. +..+|. .+++|++|+|++|.+..--..++ +|++|++++|+++.+|. .+.+|++|+|
T Consensus 61 ~~L~~L~L~~N~------l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~-~L~~L~Ls~N~l~~l~~--~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNN------LTSLPA---LPPELRTLEVSGNQLTSLPVLPP-GLLELSIFSNPLTHLPA--LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCC------CSCCCC---CCTTCCEEEECSCCCSCCCCCCT-TCCEEEECSCCCCCCCC--CCTTCCEEEC
T ss_pred CCCcEEEecCCC------CCCCCC---cCCCCCEEEcCCCcCCcCCCCCC-CCCEEECcCCcCCCCCC--CCCCcCEEEC
Confidence 456666665541 222223 57889999999986432222455 89999999999999998 7788999999
Q ss_pred CCCCccccCCCC
Q 035646 572 RYSRIEQMWCGI 583 (584)
Q Consensus 572 ~~s~i~~lp~~~ 583 (584)
++|+++.+|.++
T Consensus 129 ~~N~l~~lp~~l 140 (622)
T 3g06_A 129 FGNQLTSLPVLP 140 (622)
T ss_dssp CSSCCSCCCCCC
T ss_pred CCCCCCcCCCCC
Confidence 999999998753
No 218
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.85 E-value=0.0017 Score=65.69 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=48.9
Q ss_pred cccccc-ccccEEEecCcc---CCCCccccccCeeEEEecC-CCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKM-INLRMLLIRNLQ---LPEGLEYLSNELRLLERHG-YPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~-~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~-~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+ ..|++|+|+++. +|....... +|+.|.+.+ +.++.+|.. | .+.+|++|||++++|+.+|.+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred cchhhcchhhhhhccccccccCCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 445554 357888888874 455555565 788888875 478888876 4 788888888888888888865
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.83 E-value=0.0039 Score=71.07 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=39.0
Q ss_pred cccccchhhHHHHHHHhhhcC-------CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKEC-------NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999888776321 1236899999999999999999998753
No 220
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.81 E-value=0.0022 Score=63.69 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=35.2
Q ss_pred hhHHHHHHHhhhcCCc-eEEEEEEecCCccHHHHHHHHHhhhc-ccccceEEEE
Q 035646 182 SHLKNLRLLMDKECNV-VCMIGICVMGGIGKTTLAGVVYDLTS-HNFEASSCLA 233 (584)
Q Consensus 182 ~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~ 233 (584)
..++.+.+++...... ...+.|+|.+|+|||+||..+++... .....+.++.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3444555666542221 46788999999999999999999765 4433444554
No 221
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.74 E-value=0.004 Score=56.95 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=59.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH--hCCCCC-CCcC-------hhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL--LKLPNN-GIWN-------VYD 268 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l--~~~~~~-~~~~-------~~~ 268 (584)
..|.|++-.|.||||+|...+-+...+--.+.++.-..+. ...+...++..+.-.+ .+.... ...+ ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4677777777999999999988765554445555322110 1222233333320000 000000 0101 111
Q ss_pred hHHHHHHHHcC-CCcEEEEeCCC--------CHHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 269 GINIIGRRLRH-KKVLLIIDDVV--------DIKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 269 ~~~~l~~~L~~-k~~LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
.....++.+.+ +-=|||||++. +.+++-.++.. ......||+|+|+..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCc
Confidence 22334444443 45699999983 23333333332 246778999999974
No 222
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.70 E-value=0.0016 Score=65.90 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=50.7
Q ss_pred ccccccccccEEEecCccC----C-CCccccccCeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNLQL----P-EGLEYLSNELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~l----p-~~i~~l~~~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|+++.+ | ..+..|++.+.++.++++++..+|+. | +|.+|++|++++++++.+|..
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence 5788899999999988753 3 24566773344566677788888655 5 788899999988888888764
No 223
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.66 E-value=0.003 Score=68.38 Aligned_cols=58 Identities=33% Similarity=0.390 Sum_probs=48.2
Q ss_pred ccccccEEEecCcc---CCCCccccccCeeEEEecCCCCCCCCCCC-CCCCc-------eEEEcCCCCccccCCCC
Q 035646 519 KMINLRMLLIRNLQ---LPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKI-------VELNMRYSRIEQMWCGI 583 (584)
Q Consensus 519 ~~~~LrvL~L~~~~---lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L-------~~L~l~~s~i~~lp~~~ 583 (584)
.+++|+.|+|++|. +|. +. .+|++|++++|.|+.+|. | + +| ++|+|++|+|+.+|.++
T Consensus 158 ~l~~L~~L~Ls~N~L~~lp~-l~---~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTFLPE-LP---ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC-CC---TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred cCCCcCEEECCCCCCCCcch-hh---CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence 57899999999985 455 44 499999999999999999 7 5 77 99999999999999854
No 224
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.63 E-value=0.0023 Score=67.32 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=38.2
Q ss_pred cccccccccEEEecCccCCCCccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccCC
Q 035646 516 SFLKMINLRMLLIRNLQLPEGLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRYSRIEQMWC 581 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~~lp~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~s~i~~lp~ 581 (584)
.|..+++|+.|++++|.+.. +...+.+|++|++++|.+..+|. + ++.+|++|+|++++++.+|.
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS
T ss_pred cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc
Confidence 35666667777776664432 11222366666666666666663 5 66666666666666666554
No 225
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.57 E-value=0.0029 Score=59.63 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=26.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
.+++|.|.+|+|||||+..++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999975443323445543
No 226
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.54 E-value=0.0004 Score=71.40 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=18.5
Q ss_pred cccccccEEEecCccCCC--------CccccccCeeEEEecCCCCC
Q 035646 518 LKMINLRMLLIRNLQLPE--------GLEYLSNELRLLERHGYPLR 555 (584)
Q Consensus 518 ~~~~~LrvL~L~~~~lp~--------~i~~l~~~LryL~l~~~~l~ 555 (584)
..+++|+.|+|++|.+.. .+..++ +|++|++++|.+.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEEECcCCCCC
Confidence 455555555555553322 334444 5555555555543
No 227
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.44 E-value=0.0067 Score=61.30 Aligned_cols=96 Identities=15% Similarity=0.024 Sum_probs=53.9
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC-
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN- 261 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~- 261 (584)
...|..+|. .+=....++.|+|.+|+||||||.+++......-..++|+. ....... . .+..+ +....
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~----~E~~~~~--~---~a~~l-G~~~~~ 115 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID----AEHALDP--E---YAKKL-GVDTDS 115 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCH--H---HHHHT-TCCGGG
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----CCCCcCH--H---HHHHc-CCCHHH
Confidence 445555664 22222468999999999999999999876544434567775 2222221 1 12222 21110
Q ss_pred ----CCcChhhhHHHHHHHHc-CCCcEEEEeCC
Q 035646 262 ----GIWNVYDGINIIGRRLR-HKKVLLIIDDV 289 (584)
Q Consensus 262 ----~~~~~~~~~~~l~~~L~-~k~~LlVlDdv 289 (584)
...+.++....+....+ .+.-++|+|.+
T Consensus 116 l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 116 LLVSQPDTGEQALEIADMLVRSGALDIIVIDSV 148 (349)
T ss_dssp CEEECCSSHHHHHHHHHHHHTTTCCSEEEEECG
T ss_pred eEEecCCCHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 11233444444444443 45779999988
No 228
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.43 E-value=0.0048 Score=61.87 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=39.4
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+.++|++..++.+...+..+ ..+.++|++|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 56899999999988877654 368899999999999999999876543
No 229
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.38 E-value=0.011 Score=59.74 Aligned_cols=50 Identities=10% Similarity=-0.024 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc------cccceEEEE
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH------NFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 233 (584)
...|..+|..+=....++.|+|.+|+|||+||..++..... .-..++|+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34556666533334579999999999999999999876422 223566775
No 230
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.35 E-value=0.022 Score=56.67 Aligned_cols=64 Identities=17% Similarity=0.063 Sum_probs=41.7
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL 255 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l 255 (584)
..|..++ .+=....++.|.|.+|+||||||..++.....+-..++|+. -......+...+....
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVTA 119 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHHH
Confidence 3444444 22223468999999999999999999876544334566664 3345666666666553
No 231
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.35 E-value=0.00087 Score=68.87 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=61.6
Q ss_pred cceeEEEeccCcccccccccc-cccccccccccccEEEecCccC--------CCCccccccCeeEEEecCCCCCCC----
Q 035646 491 TKTVEVIKLENFTEEAEMHFS-TSSNSFLKMINLRMLLIRNLQL--------PEGLEYLSNELRLLERHGYPLRSL---- 557 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~LrvL~L~~~~l--------p~~i~~l~~~LryL~l~~~~l~~l---- 557 (584)
...++.+.+..+.-. ...+. ..+..|.++++|+.|+|++|.+ |..+..++ +|++|++++|.+...
T Consensus 186 ~~~L~~L~L~~n~l~-~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIR-PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSCCC-HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHHHHHH
T ss_pred CCCcCEEECcCCCCC-HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchhhHHH
Confidence 346666666654211 10110 1113778899999999998865 56677787 899999999998764
Q ss_pred -CCCC-C--CCCceEEEcCCCCccc
Q 035646 558 -PSNF-Q--PDKIVELNMRYSRIEQ 578 (584)
Q Consensus 558 -P~~i-~--L~~L~~L~l~~s~i~~ 578 (584)
|..+ . +.+|++|+|++|.|..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCH
Confidence 7766 4 8999999999999887
No 232
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.32 E-value=0.0079 Score=57.03 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc------cccceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH------NFEASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 233 (584)
..|..+|..+=....+++|+|.+|+|||||+..++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 4455555422122358999999999999999999975322 124566665
No 233
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.31 E-value=0.00051 Score=68.96 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=33.6
Q ss_pred ccccccccccEEEecCc-cC-----CCCccccccCeeEEEecCC-CCCC--CCCCC-CCC-CceEEEcCCC
Q 035646 515 NSFLKMINLRMLLIRNL-QL-----PEGLEYLSNELRLLERHGY-PLRS--LPSNF-QPD-KIVELNMRYS 574 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~-~l-----p~~i~~l~~~LryL~l~~~-~l~~--lP~~i-~L~-~L~~L~l~~s 574 (584)
..|.++++|+.|+|++| .+ |..+..++ +|++|++++| .+.. +|..+ ++. +|++|+|++|
T Consensus 136 ~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 34555666666666665 22 22344455 6666666666 5553 45555 566 6666666666
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.27 E-value=0.012 Score=59.67 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=54.9
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCC--
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPN-- 260 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~-- 260 (584)
...|..+|. .+=....++.|+|.+|+||||||.+++......-..++|+. .....+ .. .+..+ +...
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~----~E~s~~--~~---~a~~~-g~d~~~ 128 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID----AEHALD--PV---YARAL-GVNTDE 128 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCC--HH---HHHHT-TCCGGG
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE----CCCChh--HH---HHHHc-CCCHHH
Confidence 455666664 22122358889999999999999999886544444677776 222222 11 12222 1110
Q ss_pred ---CCCcChhhhHHHHHHHHc-CCCcEEEEeCC
Q 035646 261 ---NGIWNVYDGINIIGRRLR-HKKVLLIIDDV 289 (584)
Q Consensus 261 ---~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv 289 (584)
....+.++....+....+ ...-+||+|.+
T Consensus 129 l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 129 LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp CEEECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred ceeecCCcHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 012234445555555544 45679999998
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.25 E-value=0.0085 Score=60.61 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=35.1
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
...|..+|. .+=...+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445555564 22222468999999999999999999986554444677776
No 236
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.22 E-value=0.0023 Score=61.97 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=34.0
Q ss_pred cccccccEEEecCccCC------CCccccccCeeEEEecCCCCCCCCCCC-CCC--CceEEEcCCCCcc
Q 035646 518 LKMINLRMLLIRNLQLP------EGLEYLSNELRLLERHGYPLRSLPSNF-QPD--KIVELNMRYSRIE 577 (584)
Q Consensus 518 ~~~~~LrvL~L~~~~lp------~~i~~l~~~LryL~l~~~~l~~lP~~i-~L~--~L~~L~l~~s~i~ 577 (584)
.++.+|+.|+|+++.+- ..+..++ +|++|+|+++.|+.+. .+ .|. +|++|+|+++.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 34556667777666432 2334555 6777777776666662 23 444 6777777766654
No 237
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.10 E-value=0.0032 Score=64.16 Aligned_cols=49 Identities=22% Similarity=0.112 Sum_probs=37.5
Q ss_pred cccccchhhHHHHHHHhh-------------hcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMD-------------KECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++|.+..++.+...+. ........+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 446898888888877772 0011245789999999999999999998764
No 238
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.07 E-value=0.0078 Score=59.24 Aligned_cols=49 Identities=2% Similarity=-0.088 Sum_probs=33.7
Q ss_pred HHHHHHHhh----hcCCceEEEEEEecCCccHHHHHHHHHhhhccc--ccceEEEE
Q 035646 184 LKNLRLLMD----KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN--FEASSCLA 233 (584)
Q Consensus 184 ~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~w~~ 233 (584)
...|...|. .+=.. .++.|+|++|+||||||.+++...... -..++|++
T Consensus 11 i~~LD~~LGg~~~GGl~~-GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQS-GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp CHHHHHHHHSSTTCCBCS-EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CHHHHHHhCCCCCCCCcC-CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 345555665 22222 378999999999999999998866544 24567775
No 239
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.04 E-value=0.0088 Score=59.82 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=33.0
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc------ccceEEEE
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN------FEASSCLA 233 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~ 233 (584)
..|..+|..+=....++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44555554221223589999999999999999998764322 23567775
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.96 E-value=0.0039 Score=56.18 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|.|.|++|+||||+|+.++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.93 E-value=0.033 Score=52.86 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 242
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.93 E-value=0.011 Score=54.56 Aligned_cols=44 Identities=20% Similarity=0.131 Sum_probs=33.1
Q ss_pred chhhHHHHHHHhhhc-CCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 180 IDSHLKNLRLLMDKE-CNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 180 R~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
|++.++.+.+.+... .....+|+|.|..|+|||||++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667776666532 23457999999999999999999987653
No 243
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.89 E-value=0.049 Score=52.29 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=29.8
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...+..++....+....+.|+|++|.|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445677776442334679999999999999999999853
No 244
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.88 E-value=0.026 Score=54.43 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=62.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEech--hhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVR--EISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR 275 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~--~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 275 (584)
..+++|+|+.|+|||||.+.+...+...+...+++.... ...+... . +........ +.......+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--~--------~v~q~~~gl-~~~~l~~~la~ 93 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--S--------IVNQREVGE-DTKSFADALRA 93 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--S--------EEEEEEBTT-TBSCHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--e--------eeeHHHhCC-CHHHHHHHHHH
Confidence 469999999999999999999876543333444443110 0000000 0 000000000 11233556777
Q ss_pred HHcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccch
Q 035646 276 RLRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHL 320 (584)
Q Consensus 276 ~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 320 (584)
.|...+=+|++|...+.+....++... ..|.-|++||-+..+
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 777788899999997666655444322 246678888877654
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.88 E-value=0.019 Score=53.93 Aligned_cols=111 Identities=14% Similarity=-0.082 Sum_probs=58.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC--CCcChhhhHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN--GIWNVYDGINIIGR 275 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~ 275 (584)
..++.|+|..|+||||++..++++...+-..+..+.... ... + ...+++.+ +.... ......+....+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~--d~r-~----~~~i~srl-G~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI--DTR-S----IRNIQSRT-GTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC--CGG-G----CSSCCCCC-CCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc--Cch-H----HHHHHHhc-CCCccccccCCHHHHHHHHHH
Confidence 468999999999999999999988765543444442111 000 1 01122221 11110 11122233333333
Q ss_pred HHcC-CCcEEEEeCCCC--HHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 276 RLRH-KKVLLIIDDVVD--IKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 276 ~L~~-k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
.+.+ +.-++|+|.+.. .++++.+.... ..|..||+|-+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~---~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA---ENGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH---HTTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH---hCCCeEEEEecccc
Confidence 3333 345999999952 34444333211 13678999998653
No 246
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.84 E-value=0.042 Score=53.81 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=25.2
Q ss_pred CCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 195 CNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 195 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345689999999999999999999886543
No 247
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.83 E-value=0.017 Score=51.23 Aligned_cols=84 Identities=21% Similarity=0.191 Sum_probs=63.6
Q ss_pred ccCcccCchHHHHHHHHhhCCCcEEEeCCCCC----C----CCcccHHHHHHhhhcceEEEEeccCcccchhhHHHHHHH
Q 035646 26 RGEDTRKNFTDHLYSALDEKGIIVFRDDKELE----R----GESISPGLFKAIEESKISIVVFSRSYAFSTWCLDELVHI 97 (584)
Q Consensus 26 ~~~D~~~~~~~~l~~~L~~~g~~~~~d~~~~~----~----g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 97 (584)
..+| -.....|...-....+..|.|.++.. - -..|...+.+.|..|+.+|+++|++...|.|..+|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 4555 55677777777777777788865552 2 234778899999999999999999999999999998877
Q ss_pred HHHhhcCCCcEEEeeeec
Q 035646 98 LECKNTNNQQMVYPIFYD 115 (584)
Q Consensus 98 ~~~~~~~~~~~v~Pvf~~ 115 (584)
+. ..+ .+|+-|..+
T Consensus 105 i~---~~~-~PII~Vy~~ 118 (189)
T 3hyn_A 105 IG---TKG-LPVIVIYPD 118 (189)
T ss_dssp TT---TTC-CCEEEEETT
T ss_pred HH---hcC-CcEEEEECC
Confidence 72 223 678877666
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.79 E-value=0.0069 Score=56.28 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+++|.+.+........+|+|.|..|+|||||++.++..+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4444444432233467999999999999999999987654
No 249
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.78 E-value=0.0053 Score=54.80 Aligned_cols=25 Identities=16% Similarity=-0.073 Sum_probs=22.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|+|.|++|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 250
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.76 E-value=0.011 Score=59.75 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=64.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceE-EEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASS-CLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL 277 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L 277 (584)
.+++|+|+.|+|||||.+.+...+.......+ .+.+..+...... . ....... ...........+...|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~--------~~v~q~~-~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-K--------CLVNQRE-VHRDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S--------SEEEEEE-BTTTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-c--------cceeeee-eccccCCHHHHHHHHh
Confidence 49999999999999999999876543322222 2221100000000 0 0000000 0011123445788889
Q ss_pred cCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccchh
Q 035646 278 RHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHLL 321 (584)
Q Consensus 278 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 321 (584)
...+=+|++|...+.+.++.+.... ..|..||+||-....+
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999999998877766655432 2466688888877654
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.74 E-value=0.014 Score=58.23 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
...|..+|..+=....++.|+|.+|+|||+||.+++..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666422223479999999999999999999875
No 252
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.66 E-value=0.008 Score=61.46 Aligned_cols=51 Identities=16% Similarity=0.043 Sum_probs=36.9
Q ss_pred ccccccchhhHHHHHHHhh----h------------------------cCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 174 LEHLVGIDSHLKNLRLLMD----K------------------------ECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~----~------------------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
...++|.+..++.|...+. . .......+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 20 DNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457888888777766651 0 0112356889999999999999999987743
No 253
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.60 E-value=0.0068 Score=64.19 Aligned_cols=45 Identities=13% Similarity=-0.061 Sum_probs=38.2
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+.++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 56899999999888777644 3788999999999999999998663
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.59 E-value=0.006 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+.|.|+|++|+||||+|+.++.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999998763
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.59 E-value=0.061 Score=56.20 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=43.4
Q ss_pred HHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHHHHhC
Q 035646 184 LKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLSQLLK 257 (584)
Q Consensus 184 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~ 257 (584)
...|..++ .+=....++.|.|.+|+|||+||..++...... -..++|+. -......+...++....+
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSEAR 254 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHHTT
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHHcC
Confidence 44455555 232234689999999999999999999876532 23456654 334556777776655433
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.57 E-value=0.0042 Score=70.06 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=81.3
Q ss_pred ccccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccC
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEG 242 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~ 242 (584)
-..++|.+...+.|...+... -.....+.++|++|+|||+||+.++......|-. +. . +.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~---~~-- 546 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-G---PE-- 546 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-C---SS--
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-c---hH--
Confidence 356788888888888776421 1124568899999999999999999977544321 11 0 00
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-HcCCCcEEEEeCCCCH----------------HHHHHHhcCCCCC
Q 035646 243 GLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR-LRHKKVLLIIDDVVDI----------------KQLECLAGKREWF 305 (584)
Q Consensus 243 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 305 (584)
+ .. . ...........+.+. -...+.++++|+++.. ..+..++..+...
T Consensus 547 -l-----------~~-~--~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 547 -L-----------LT-M--WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp -S-----------TT-C--CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred -h-----------hh-h--hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 0 00 0 000111122222222 2345778999998531 1234555554422
Q ss_pred C--CCcEEEEEccccchhhc-----cccceEeecCCCCHHHHHHHhc
Q 035646 306 G--PGSRIVITSRDKHLLMM-----HGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 306 ~--~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
. .+..||.||........ ......+.++..+.++-.+++.
T Consensus 612 ~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 658 (806)
T 1ypw_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp ----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTT
T ss_pred cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHH
Confidence 2 23345556654332211 1233567788888888888887
No 257
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.53 E-value=0.015 Score=64.85 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=76.7
Q ss_pred cccccchhhHHHHHHHhhhc-----------CCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCC
Q 035646 175 EHLVGIDSHLKNLRLLMDKE-----------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGG 243 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~ 243 (584)
..+.|.++..++|.+.+... ....+-+.++|++|.|||.||+++++.....| +. ++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~----v~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS----IK---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE----CC----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE----ec----
Confidence 45678888888887765421 12245688999999999999999998765433 21 11
Q ss_pred hHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-cCCCcEEEEeCCCCH----------------HHHHHHhcCCCCCC
Q 035646 244 LTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRL-RHKKVLLIIDDVVDI----------------KQLECLAGKREWFG 306 (584)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~ 306 (584)
.. .++... ..+.+..+..+.+.. +..+++|+||+++.. ..+..|+..+....
T Consensus 544 ~~----~l~s~~-------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 544 GP----ELLTMW-------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HH----HHHTTT-------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred cc----hhhccc-------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 01 111111 111123333333333 467999999999521 01233332222112
Q ss_pred --CCcEEEEEccccchh-----hccccceEeecCCCCHHHHHHHhc
Q 035646 307 --PGSRIVITSRDKHLL-----MMHGVDEIYNLRELHDDKALQLFC 345 (584)
Q Consensus 307 --~gs~IiiTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~ 345 (584)
.+.-||.||..+..+ .....+..+.++.-+.++-.++|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~ 658 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTT
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHH
Confidence 233344455544332 112355677887777777777776
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.51 E-value=0.0069 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=19.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+|+|.|++|+||||+|+.+ .+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 443
No 259
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.50 E-value=0.067 Score=53.44 Aligned_cols=64 Identities=19% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHH
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQL 255 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l 255 (584)
..|..++. +=....++.|.|.+|+||||||..++......-..+.|+. -.-....+...++...
T Consensus 34 ~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 34 VQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp HHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred hHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHh
Confidence 34444442 2223368999999999999999999986554333455553 3455667777776554
No 260
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.49 E-value=0.0076 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=22.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|+|.|++|+||||+|+.++....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998763
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.48 E-value=0.066 Score=55.85 Aligned_cols=69 Identities=19% Similarity=0.118 Sum_probs=43.2
Q ss_pred cchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHH
Q 035646 179 GIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQ 254 (584)
Q Consensus 179 GR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~ 254 (584)
|...-...|..++. +=....++.|.|.+|+||||||..++......-..++|+. -......+...++..
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS------lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 247 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC------SSSCTTHHHHHHHHH
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE------CCCCHHHHHHHHHHH
Confidence 33344455555553 3233468999999999999999999987654433455553 333445555555544
No 262
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.46 E-value=0.022 Score=48.54 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=40.9
Q ss_pred EEEecCccCC--CCccccccCeeEEEecCCCCCCCCCCC--CCCCceEEEcCCCCc
Q 035646 525 MLLIRNLQLP--EGLEYLSNELRLLERHGYPLRSLPSNF--QPDKIVELNMRYSRI 576 (584)
Q Consensus 525 vL~L~~~~lp--~~i~~l~~~LryL~l~~~~l~~lP~~i--~L~~L~~L~l~~s~i 576 (584)
+++.++..|. .-...++.+|++|+|+++.|+.||..+ .|.+|++|+|.++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5566665544 333457778999999999999999886 799999999998754
No 263
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.34 E-value=0.015 Score=55.39 Aligned_cols=41 Identities=15% Similarity=-0.091 Sum_probs=29.2
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 182 SHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+.++..-..........|+|.|++|+||||+|+.+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333333345789999999999999999998765
No 264
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.33 E-value=0.016 Score=52.64 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..|.|.|++|+||||+|+.++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987653
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.29 E-value=0.0098 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=20.6
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 266
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.28 E-value=0.0024 Score=66.96 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=33.1
Q ss_pred ccccccccccEEEecCccCCC----Cccc-ccc---CeeEEEecCCCCC-----CCCCCC-CCCCceEEEcCCCCcc
Q 035646 515 NSFLKMINLRMLLIRNLQLPE----GLEY-LSN---ELRLLERHGYPLR-----SLPSNF-QPDKIVELNMRYSRIE 577 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~lp~----~i~~-l~~---~LryL~l~~~~l~-----~lP~~i-~L~~L~~L~l~~s~i~ 577 (584)
..|..+++|+.|+|+++.+.+ .+.. +.. +|++|++++|++. .+|..+ ++.+|++|+|++|.+.
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 445555666666666654321 1111 211 3666666666655 345555 5666666666665553
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.28 E-value=0.067 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=23.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+++|+|.+|+||||++..++....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998665
No 268
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.27 E-value=0.0097 Score=59.92 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=34.1
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++|.+..++.+...+..+. ..-+.|+|.+|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 568999886665544333222 22488999999999999999998654
No 269
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.25 E-value=0.012 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.24 E-value=0.18 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|+.|+|||||.+.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.21 E-value=0.0087 Score=53.52 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=22.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|+|+|++|+|||||++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998653
No 272
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.17 E-value=0.011 Score=52.60 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=22.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|.|++|+||||+|+.++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.13 E-value=0.012 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999875
No 274
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.12 E-value=0.018 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|.|++|+||||||+.++....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999998765
No 275
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.11 E-value=0.11 Score=54.34 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=34.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
..++.|.|.+|+||||||..++...... -..++|+. .......+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHH
Confidence 4689999999999999999999876543 22456654 23344555555543
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.11 E-value=0.0084 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+.|.|+|++|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999765
No 277
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.11 E-value=0.01 Score=59.31 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=16.6
Q ss_pred cccccccccEEEecCc-cCCC----CccccccCeeEEEecCC
Q 035646 516 SFLKMINLRMLLIRNL-QLPE----GLEYLSNELRLLERHGY 552 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~-~lp~----~i~~l~~~LryL~l~~~ 552 (584)
.+.++++|+.|+|++| .+.+ .+..++ +|++|++++|
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 282 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc
Confidence 3444555555555554 2221 234444 5555555554
No 278
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.11 E-value=0.083 Score=56.15 Aligned_cols=54 Identities=9% Similarity=-0.078 Sum_probs=38.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHHHHhC
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLSQLLK 257 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~ 257 (584)
..++.|.|.+|+||||||.+++...... -..++|+. -......+...++....+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLHNR 296 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHHTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHHcC
Confidence 4689999999999999999999876554 33566664 334556677766655443
No 279
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.03 E-value=0.0035 Score=65.78 Aligned_cols=84 Identities=20% Similarity=0.148 Sum_probs=57.4
Q ss_pred eeEEEeccCcccccccccccccccccccccccEEEecCccCCC----Cccc-----cccCeeEEEecCCCCC-----CCC
Q 035646 493 TVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPE----GLEY-----LSNELRLLERHGYPLR-----SLP 558 (584)
Q Consensus 493 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~----~i~~-----l~~~LryL~l~~~~l~-----~lP 558 (584)
.++.+.+..+.-. ......++..+..+++|+.|+|++|.+.+ .+.. .+ +|++|++++|++. .+|
T Consensus 314 ~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCSFT-AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSCCB-GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHH
T ss_pred cceeeEcCCCCCc-hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC-ceEEEECCCCCCChhhHHHHH
Confidence 4555555544211 11222234667788999999999886532 2222 33 8999999999988 788
Q ss_pred CCC-CCCCceEEEcCCCCccc
Q 035646 559 SNF-QPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 559 ~~i-~L~~L~~L~l~~s~i~~ 578 (584)
..+ ++.+|++|+|++|++..
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHhCCCccEEECCCCCCCH
Confidence 888 89999999999998753
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.03 E-value=0.065 Score=55.43 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=27.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
.++|+++|.+|+||||++..++..++..-..+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999998665443333333
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.02 E-value=0.066 Score=49.10 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=22.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+++|.|+.|+|||||++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 282
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.02 E-value=0.064 Score=54.56 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=61.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceE-EEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASS-CLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRR 276 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 276 (584)
..+++|+|+.|+|||||++.+...+.......+ ++... . ...... .+ .+....... .+.......++..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~--~--e~~~~~---~~--~~v~Q~~~g-~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--I--EYVFKH---KK--SIVNQREVG-EDTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS--C--CSCCCC---SS--SEEEEEEBT-TTBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc--H--hhhhcc---Cc--eEEEeeecC-CCHHHHHHHHHHH
Confidence 468999999999999999999886543323333 22210 0 000000 00 000000000 0112335567778
Q ss_pred HcCCCcEEEEeCCCCHHHHHHHhcCCCCCCCCcEEEEEccccch
Q 035646 277 LRHKKVLLIIDDVVDIKQLECLAGKREWFGPGSRIVITSRDKHL 320 (584)
Q Consensus 277 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 320 (584)
|...+-+|++|.+.+.+.+...+... ..|..|+.|+-...+
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 87888899999998777665544332 346667777776543
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.01 E-value=0.014 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.016 Sum_probs=22.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 284
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.99 E-value=0.024 Score=57.17 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..|..+|..+=....++.|+|.+|+|||||+..++...
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445554222235799999999999999999999765
No 285
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.99 E-value=0.19 Score=49.35 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=27.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..+++++|.+|+||||++..++......-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 578999999999999999999986654433444443
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.97 E-value=0.011 Score=54.43 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=22.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+|+|.|++|+||||+|+.++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998875
No 287
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.97 E-value=0.012 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=21.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.96 E-value=0.07 Score=52.62 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=27.5
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
...+++|+|.+|+||||++..++......-..+.++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 357999999999999999999998765442233443
No 289
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.95 E-value=0.015 Score=52.28 Aligned_cols=83 Identities=10% Similarity=0.092 Sum_probs=54.8
Q ss_pred ccceeEEEeccCcccccccccccccccccccccccEEEecCcc-CCC-Cccccc------cCeeEEEecCCC-CCCCC-C
Q 035646 490 GTKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQ-LPE-GLEYLS------NELRLLERHGYP-LRSLP-S 559 (584)
Q Consensus 490 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-lp~-~i~~l~------~~LryL~l~~~~-l~~lP-~ 559 (584)
+.-.++.+.+..+. .....+ ..+..+++|+.|+|++|. +-+ ++..+. ++|++|++++|+ |+.-= .
T Consensus 59 ~~~~L~~LDLs~~~-Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 59 DKYKIQAIDATDSC-IMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp TCCCEEEEEEESCC-CCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CCceEeEEeCcCCC-ccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 34567777776652 112222 446789999999999995 443 333333 269999999994 65311 1
Q ss_pred CC-CCCCceEEEcCCCC-cc
Q 035646 560 NF-QPDKIVELNMRYSR-IE 577 (584)
Q Consensus 560 ~i-~L~~L~~L~l~~s~-i~ 577 (584)
.+ ++.+|++|+|++|. |+
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 24 78999999999984 54
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.95 E-value=0.013 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.2
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.|+|.|+.|+||||+|+.++.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999987643
No 291
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.93 E-value=0.019 Score=57.49 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=32.6
Q ss_pred cchhhHHHHHHHhhh--cCCceEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 179 GIDSHLKNLRLLMDK--ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 179 GR~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
+-+...+.+.+.+.. ..+....|.|+|++|+||||+++.++......|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444555554431 123456799999999999999999998765444
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.93 E-value=0.0094 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4688999999999999999987654433
No 293
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.89 E-value=0.019 Score=59.60 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=38.3
Q ss_pred ccccccchhhHHHHHHHhhhc------------CCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 174 LEHLVGIDSHLKNLRLLMDKE------------CNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 174 ~~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+..++|.+..++.|...+... ....+-+.++|++|+|||++|+.++......
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 466788888888876655321 0123568899999999999999999876443
No 294
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.86 E-value=0.2 Score=49.72 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=27.6
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
...+++|+|.+|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357999999999999999999998765443334444
No 295
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.85 E-value=0.023 Score=51.51 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+|.|.|++|+||||+++.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999987653
No 296
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.83 E-value=0.037 Score=56.76 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=27.5
Q ss_pred hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHh
Q 035646 183 HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
-+..|..+|..+=....++.|+|.+|+|||||+..++-
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 34556666643222236999999999999999998764
No 297
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.83 E-value=0.0081 Score=60.96 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=39.3
Q ss_pred ccccEEEecCccCCC----C----ccccccCeeEEEecCCCCCCCCCC-----C-C-CCCceEEEcCCCCcc
Q 035646 521 INLRMLLIRNLQLPE----G----LEYLSNELRLLERHGYPLRSLPSN-----F-Q-PDKIVELNMRYSRIE 577 (584)
Q Consensus 521 ~~LrvL~L~~~~lp~----~----i~~l~~~LryL~l~~~~l~~lP~~-----i-~-L~~L~~L~l~~s~i~ 577 (584)
++|+.|+|++|.+.. . +..++.+|++|++++|.+...+.. + . ..+|++|+|++|++.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 788888888886532 1 333313788888888888777653 2 2 368888888888876
No 298
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.83 E-value=0.014 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|.|.|++|+||||+|+.++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.80 E-value=0.019 Score=51.97 Aligned_cols=25 Identities=20% Similarity=-0.037 Sum_probs=22.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...|+|.|++|+||||+|+.++.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.79 E-value=0.017 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=22.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+++|.|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.017 Score=52.61 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=21.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+|+|.|++|+||||+|+.++...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 302
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.77 E-value=0.015 Score=52.50 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|+|.|++|+||||+|+.++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998653
No 303
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.77 E-value=0.012 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=18.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|.|.|++|+||||+|+.++....
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987654
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.76 E-value=0.017 Score=52.68 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=22.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|+|.|++|+||||+|+.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 305
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.72 E-value=0.029 Score=51.80 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..|+|.|++|+||||+|+.++......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999876543
No 306
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.71 E-value=0.023 Score=52.26 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=30.4
Q ss_pred hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 183 HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
-+..+..++..- ...+.+.|+|++|+|||++|..+++.+..
T Consensus 44 f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356666666532 22346899999999999999999987643
No 307
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.71 E-value=0.066 Score=53.52 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=59.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGRRLR 278 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~ 278 (584)
..++|+|..|+|||||++.++..+.. ....+.+.+....... .... . .. +.. ..-......+...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~~---~-i~-~~~------ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHKN---Y-TQ-LFF------GGNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCSS---E-EE-EEC------BTTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cchh---E-EE-EEe------CCChhHHHHHHHHhh
Confidence 48999999999999999999876543 2445555432111000 0000 0 00 000 012234456777788
Q ss_pred CCCcEEEEeCCCCHHHHHHHhcCCCCCCCCc-EEEEEccccch
Q 035646 279 HKKVLLIIDDVVDIKQLECLAGKREWFGPGS-RIVITSRDKHL 320 (584)
Q Consensus 279 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs-~IiiTTR~~~v 320 (584)
.++-+|++|.+.+.+.++.+... . .|. -+|+||.....
T Consensus 239 ~~p~ilildE~~~~e~~~~l~~~-~---~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYNVL-C---SGHKGTLTTLHAGSS 277 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHHHH-H---TTCCCEEEEEECSSH
T ss_pred hCCCEEEEcCCChHHHHHHHHHH-h---cCCCEEEEEEcccHH
Confidence 88999999999875555443322 1 232 26666655543
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.71 E-value=0.02 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.057 Sum_probs=23.0
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...+|+|.|++|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998764
No 309
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.70 E-value=0.018 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=21.5
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998653
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.68 E-value=0.016 Score=52.40 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=22.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999987653
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.67 E-value=0.018 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=22.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|+|.|++|+||||+|+.++.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998653
No 312
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.67 E-value=0.02 Score=51.96 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=22.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|.|++|+||||+|+.++....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.65 E-value=0.015 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=22.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|.|.|++|+||||+|+.++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998653
No 314
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.64 E-value=0.15 Score=52.81 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=27.4
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
...+|.++|.+|+||||++..++..++..-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998665543333333
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.63 E-value=0.02 Score=54.94 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.2
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
...+|+|.|++|+||||+|+.++.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4578999999999999999999886543
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.56 E-value=0.022 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.7
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
...+|+|.|+.|+||||+|+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999875
No 317
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.55 E-value=0.17 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+++|+|.+|+|||||+..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999987543
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.52 E-value=0.02 Score=51.92 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=21.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
...|+|+|++|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999886
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.51 E-value=0.021 Score=52.52 Aligned_cols=26 Identities=19% Similarity=0.005 Sum_probs=22.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...|+|.|++|+||||+|+.++....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988653
No 320
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.48 E-value=0.021 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.4
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.45 E-value=0.021 Score=53.00 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+++|+|+.|+|||||++.++....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998654
No 322
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.45 E-value=0.13 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|+.|+|||||.+.++--.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998643
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.44 E-value=0.019 Score=53.70 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=22.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|.|.|++|+||||+|+.++....
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998653
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.44 E-value=0.021 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHh
Q 035646 200 MIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~ 220 (584)
+|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 325
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.43 E-value=0.23 Score=51.52 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=27.9
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc-ccceEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCL 232 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~ 232 (584)
..++|.++|.+|+||||++..++...+.. -..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 46899999999999999999999876654 2334444
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.39 E-value=0.033 Score=54.50 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|.|.|++|+||||+|+.++.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.38 E-value=0.029 Score=50.03 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=24.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.++++|.|..|+|||||+..+.......
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4689999999999999999999876544
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.38 E-value=0.017 Score=52.48 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998665333
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.37 E-value=0.022 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+|+|+|++|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998755
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.36 E-value=0.016 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++|+|.|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988663
No 331
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.36 E-value=0.031 Score=51.78 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=24.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..+|+|.|+.|+||||+|+.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876543
No 332
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.36 E-value=0.25 Score=49.12 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.2
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
...+++|+|+.|+||||++..++..++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999876543
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.35 E-value=0.025 Score=52.26 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998753
No 334
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.34 E-value=0.029 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.1
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36799999999999999999998753
No 335
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.33 E-value=0.0052 Score=62.78 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=55.5
Q ss_pred ceeEEEeccCcccccccccccccccccccccccEEEecCccCC--------CCccccccCeeEEEecCCCCCC-----CC
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLP--------EGLEYLSNELRLLERHGYPLRS-----LP 558 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp--------~~i~~l~~~LryL~l~~~~l~~-----lP 558 (584)
..++.+.+..+.-. ......+...+..+++|+.|+|++|.+. +.+...+ +|++|+|++|.|.. ++
T Consensus 155 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 155 CQITTLRLSNNPLT-AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp CCCCEEECCSSCCH-HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHHHHHH
T ss_pred CccceeeCCCCCCC-hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHHHHHH
Confidence 34555655554211 1122223355677888999999888643 3455555 89999999998873 44
Q ss_pred CCC-CCCCceEEEcCCCCccc
Q 035646 559 SNF-QPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 559 ~~i-~L~~L~~L~l~~s~i~~ 578 (584)
..+ ...+|++|||++|.|..
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhCCCCCEEeccCCCCCH
Confidence 555 57889999999988753
No 336
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.32 E-value=0.066 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.030 Sum_probs=18.7
Q ss_pred EEEEEecCCccHHHHHHHHHhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
+..|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6779999999999999886543
No 337
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.03 Score=53.02 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=27.2
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 58999999999999999998876544334566664
No 338
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.30 E-value=0.023 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 339
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.30 E-value=0.044 Score=55.37 Aligned_cols=28 Identities=21% Similarity=-0.019 Sum_probs=23.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
..++|+|.+|+|||||+..+++.+....
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 5899999999999999999988665433
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.27 E-value=0.027 Score=52.18 Aligned_cols=26 Identities=35% Similarity=0.287 Sum_probs=23.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|.|..|+|||||++.++....
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 341
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.26 E-value=0.035 Score=55.11 Aligned_cols=46 Identities=26% Similarity=0.250 Sum_probs=31.1
Q ss_pred ccchhhHHHHHHHhhhc--CCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 178 VGIDSHLKNLRLLMDKE--CNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 178 vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|-...+..+...+... .....+|+|.|..|+|||||++.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444444444333322 33467999999999999999999887654
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.25 E-value=0.024 Score=52.29 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.25 E-value=0.025 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|+|.|+.|+||||+|+.++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 344
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.23 E-value=0.026 Score=52.82 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=26.7
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhh
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..|...|..+=....+++|.|++|+|||||++.++..
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455322222479999999999999999999874
No 345
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.19 E-value=0.07 Score=53.91 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=29.2
Q ss_pred HHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 185 KNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 185 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+...+........+|+|+|.+|+|||||+..++.....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444444333445789999999999999999999876543
No 346
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.19 E-value=0.049 Score=56.65 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.2
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcccccce
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHNFEAS 229 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 229 (584)
.++|+|.+|+|||||+..+......++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 588999999999999999998765544333
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.18 E-value=0.025 Score=52.28 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+|+|.|+.|+||||+|+.++.....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987644
No 348
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.16 E-value=0.31 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|..|+|||||.+.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998864
No 349
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.16 E-value=0.025 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.14 E-value=0.027 Score=52.88 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=21.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..|.|.|++|+||||+|+.++...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998765
No 351
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.12 E-value=0.042 Score=66.78 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=55.0
Q ss_pred HHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCC----
Q 035646 186 NLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPN---- 260 (584)
Q Consensus 186 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~---- 260 (584)
.|..+|. .+=...+.|.|+|++|+|||+||.+++.....+-..+.|+. +....+... ++.+ +.+-
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~l~-----a~~~-G~dl~~l~ 1483 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKL-GVDIDNLL 1483 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHHH-----HHHT-TCCTTTCE
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCHHH-----HHHc-CCCchhce
Confidence 3555554 22123468999999999999999999887555545566765 222222222 2232 1100
Q ss_pred -CCCcChhhhHHHHHHHH-cCCCcEEEEeCCC
Q 035646 261 -NGIWNVYDGINIIGRRL-RHKKVLLIIDDVV 290 (584)
Q Consensus 261 -~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~ 290 (584)
....+.+.....+++.. +.+.-+||+|.+.
T Consensus 1484 v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1484 CSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 01223334444455444 3578899999994
No 352
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.11 E-value=0.04 Score=60.04 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=39.4
Q ss_pred cccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 175 EHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 175 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 66899999998888877754 488999999999999999999865443
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.10 E-value=0.027 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|.|.|++|+||||+|+.++...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999864
No 354
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.09 E-value=0.069 Score=49.59 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=30.4
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 182 SHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 182 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+..+.+...+... ..+.|+|+|.+|+|||||+..+.......
T Consensus 16 ~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444555544422 46799999999999999999998865444
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.07 E-value=0.028 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 356
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.05 E-value=0.063 Score=48.79 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 357
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.04 E-value=0.034 Score=51.92 Aligned_cols=26 Identities=19% Similarity=-0.012 Sum_probs=23.5
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..++|.|.|++|+||||.|+.++.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999865
No 358
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.03 E-value=0.045 Score=51.13 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=28.8
Q ss_pred hHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 183 HLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 183 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+.+...+.. .....|+|+|.+|+|||||+..+......
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 34444444432 24678999999999999999999976433
No 359
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.01 E-value=0.17 Score=49.62 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=26.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
..+++|+|.+|+||||++..++......-..+.++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 47899999999999999999998665442333333
No 360
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.97 E-value=0.03 Score=53.37 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=22.8
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+++|.|+.|+|||||++.++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999997653
No 361
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.96 E-value=0.028 Score=51.52 Aligned_cols=26 Identities=8% Similarity=0.219 Sum_probs=23.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++++|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987654
No 362
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.95 E-value=0.03 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|.|+.|+||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999997664
No 363
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.93 E-value=0.044 Score=54.32 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=28.6
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
+.++|+|+|=||+||||.|..++.-+...-..+.-++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999888876555433455554
No 364
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.92 E-value=0.03 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.1
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987553
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.91 E-value=0.032 Score=51.85 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.5
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 366
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.85 E-value=0.028 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.2
Q ss_pred eEEEEEEecCCccHHHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVY 219 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~ 219 (584)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999643
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.84 E-value=0.035 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|+|.|+.|+||||+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998865
No 368
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.84 E-value=0.05 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=23.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|.|.|++|+||||+|+.++....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999988653
No 369
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.83 E-value=0.38 Score=50.70 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=23.7
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
..++|+|+|.+|+||||++..++...+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999765543
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.82 E-value=0.032 Score=52.16 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|.|.|++|+||||+|+.++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 371
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=93.77 E-value=0.012 Score=59.82 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=60.4
Q ss_pred ceeEEEeccCcccccccccccccccccccc-cccEEEecCccCCC----Ccccc-----ccCeeEEEecCCCCCCCCCC-
Q 035646 492 KTVEVIKLENFTEEAEMHFSTSSNSFLKMI-NLRMLLIRNLQLPE----GLEYL-----SNELRLLERHGYPLRSLPSN- 560 (584)
Q Consensus 492 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~-~LrvL~L~~~~lp~----~i~~l-----~~~LryL~l~~~~l~~lP~~- 560 (584)
..++.+.+....-. ......+...|..++ +|+.|+|++|.+.. .+..+ + +|++|++++|.+...+..
T Consensus 22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHH
T ss_pred CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCcCChHHHHH
Confidence 34666666654211 111111115677888 89999999996543 34444 5 899999999999877654
Q ss_pred ----C-CC-CCceEEEcCCCCccccC
Q 035646 561 ----F-QP-DKIVELNMRYSRIEQMW 580 (584)
Q Consensus 561 ----i-~L-~~L~~L~l~~s~i~~lp 580 (584)
+ .+ .+|++|+|++|.+...+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHH
Confidence 4 44 89999999999998765
No 372
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.75 E-value=0.036 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.9
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|+|.|+.|+||||+|+.++....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988654
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.75 E-value=0.27 Score=50.69 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=27.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
..+++|+|.+|+||||++..++......-..+..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 57899999999999999999998765543333433
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.73 E-value=0.026 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.7
Q ss_pred EEEEEecCCccHHHHHHHHHhhhc
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+|+|.|..|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.67 E-value=0.03 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|+|+|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998664
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.59 E-value=0.037 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=22.1
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..|+|.|+.|+||||+++.++..+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.58 E-value=0.035 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..|.|.|++|+||||+|+.++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 378
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.56 E-value=0.011 Score=53.70 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=31.4
Q ss_pred ccccccccccEEEecCccCC--------CCccccccCeeEEEe--cCCCCCC-----CCCCC-CCCCceEEEcCCCCc
Q 035646 515 NSFLKMINLRMLLIRNLQLP--------EGLEYLSNELRLLER--HGYPLRS-----LPSNF-QPDKIVELNMRYSRI 576 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~~lp--------~~i~~l~~~LryL~l--~~~~l~~-----lP~~i-~L~~L~~L~l~~s~i 576 (584)
..+...++|+.|+|++|.+- +.+.... .|++|++ +++.|.. |...+ ....|++|+|++|.|
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNT-SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCC-CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33444455666666665432 2233333 5666666 5555543 33333 445666666666654
No 379
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.52 E-value=0.69 Score=44.87 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=65.8
Q ss_pred cccHHHHHHhhhcceEEEEeccCcccchhhHHHHHHHHHHhhcCCCcEEEeeeeccCcchhhcccchHHHHHHhHHHhhh
Q 035646 61 SISPGLFKAIEESKISIVVFSRSYAFSTWCLDELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYEEVFS 140 (584)
Q Consensus 61 ~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~~v~Pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~ 140 (584)
....++.+.++++++.|.|+.-.-..+..+. ++...+ ++ ..++-|+-+.| +-.
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~l~~~l-----~~-kp~ilVlNK~D---L~~----------------- 64 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRNP-MIEDIL-----KN-KPRIMLLNKAD---KAD----------------- 64 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-HHHHHC-----SS-SCEEEEEECGG---GSC-----------------
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-HHHHHH-----CC-CCEEEEEECcc---cCC-----------------
Confidence 3456888999999999999986655555542 343333 22 33444443433 211
Q ss_pred hhHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhHHHHHHHhhhc---------CCceEEEEEEecCCccH
Q 035646 141 ENIEKVQKWRDALREVANISGWELKDMNESEFILEHLVGIDSHLKNLRLLMDKE---------CNVVCMIGICVMGGIGK 211 (584)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~i~~~~vGR~~~~~~l~~~L~~~---------~~~~~vv~I~G~gGiGK 211 (584)
.+..+.|.+.+.+ .|+..-..+ ...-.|.++..+.+.+.+... ......++|+|.+|+||
T Consensus 65 --~~~~~~~~~~~~~----~g~~~i~iS-----A~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGK 133 (282)
T 1puj_A 65 --AAVTQQWKEHFEN----QGIRSLSIN-----SVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGK 133 (282)
T ss_dssp --HHHHHHHHHHHHT----TTCCEEECC-----TTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSH
T ss_pred --HHHHHHHHHHHHh----cCCcEEEEE-----CCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCch
Confidence 0113445444422 121100000 112234455555555554311 12345788999999999
Q ss_pred HHHHHHHHh
Q 035646 212 TTLAGVVYD 220 (584)
Q Consensus 212 TtLA~~~~~ 220 (584)
|||...+..
T Consensus 134 SsliN~l~~ 142 (282)
T 1puj_A 134 STLINRLAK 142 (282)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998875
No 380
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.50 E-value=0.37 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
+++.|.|.+|.||||++..+.......
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 588899999999999999998865443
No 381
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.50 E-value=0.029 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 382
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.47 E-value=0.045 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCccHHHHHHHHHh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 383
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.46 E-value=0.038 Score=54.99 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=23.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++|.|.|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999998653
No 384
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.46 E-value=0.043 Score=52.01 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=26.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh-cccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT-SHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~w~~ 233 (584)
..++.|.|.+|+|||+||.+++... ...-..++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3589999999999999999987653 33233455543
No 385
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.45 E-value=0.4 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.++-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999986
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.41 E-value=0.046 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.081 Sum_probs=23.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|.|.|+.|+||||+|+.++....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999988664
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.41 E-value=0.043 Score=51.77 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=22.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|+|.|++|+||||+|+.++..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988663
No 388
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.39 E-value=0.046 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|+|.|..|+|||||++.++...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.32 E-value=0.047 Score=54.45 Aligned_cols=25 Identities=28% Similarity=0.106 Sum_probs=22.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|+|.|++|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.32 E-value=0.05 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.033 Sum_probs=20.8
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 391
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.31 E-value=0.046 Score=54.16 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.5
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...+|+|.|..|+|||||++.+.....
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 357999999999999999999987543
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.30 E-value=0.045 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.099 Sum_probs=22.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
++|.|+|+.|+||||||..++.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 393
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.28 E-value=1.1 Score=44.57 Aligned_cols=124 Identities=6% Similarity=-0.024 Sum_probs=73.3
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcc-cccceEEEEechhhcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSH-NFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIGR 275 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 275 (584)
-.++..++|..|.||++.+..+...+.. .|+....+. + ....++..+...+-. .
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~---------------------~ 71 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFSLCQA---------------------M 71 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHHHHHH---------------------H
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHHHhcC---------------------c
Confidence 3568999999999999999999886532 343221121 1 112333333222111 1
Q ss_pred HHcCCCcEEEEeCCCC---HHHHHHHhcCCCCCCCCcEEEEEccc-------cchhhc-cccceEeecCCCCHHHHHHHh
Q 035646 276 RLRHKKVLLIIDDVVD---IKQLECLAGKREWFGPGSRIVITSRD-------KHLLMM-HGVDEIYNLRELHDDKALQLF 344 (584)
Q Consensus 276 ~L~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf 344 (584)
-+-+.+-++|+|+++. .+..+.+...+....+++.+|++|-. ..+... ......++..+++.++..+.+
T Consensus 72 plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence 1345677899999854 34555565554444567777766533 122222 223467888999998888666
Q ss_pred c
Q 035646 345 C 345 (584)
Q Consensus 345 ~ 345 (584)
.
T Consensus 152 ~ 152 (343)
T 1jr3_D 152 A 152 (343)
T ss_dssp H
T ss_pred H
Confidence 5
No 394
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.26 E-value=0.043 Score=50.70 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|+.|+|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998755
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.19 E-value=0.048 Score=51.44 Aligned_cols=25 Identities=20% Similarity=-0.028 Sum_probs=22.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|.|.|++|+||||+|+.++.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998763
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.16 E-value=0.051 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.06 E-value=0.065 Score=50.77 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=25.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc-ccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS-HNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~ 233 (584)
.+++|.|+.|+|||||++.++.... ..-....++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6899999999999999999884322 2223445553
No 398
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.03 E-value=0.065 Score=52.82 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+++|+|++|+|||||+..++.....
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 469999999999999999999875543
No 399
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.02 E-value=0.018 Score=58.42 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=45.5
Q ss_pred ccccccEEEecCccCCC----Cc---cccccCeeEEEecCCCCCC-----CCCCC-CCCCceEEEcCCCCcc
Q 035646 519 KMINLRMLLIRNLQLPE----GL---EYLSNELRLLERHGYPLRS-----LPSNF-QPDKIVELNMRYSRIE 577 (584)
Q Consensus 519 ~~~~LrvL~L~~~~lp~----~i---~~l~~~LryL~l~~~~l~~-----lP~~i-~L~~L~~L~l~~s~i~ 577 (584)
.+++||+|+|.+|.+.+ .+ ..++ +|++|+|+.+.+.. |+..+ ++.+|++|+|++|.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~-~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILP-QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGG-GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCC-CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 57899999998886432 11 2456 89999999888775 78887 8999999999998774
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.00 E-value=0.054 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.211 Sum_probs=20.9
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998865
No 401
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.98 E-value=0.058 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=22.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+++|.|+.|+|||||++.++...
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999855
No 402
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.85 E-value=0.044 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998755
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.76 E-value=0.35 Score=59.00 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=58.3
Q ss_pred hhhHHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCC
Q 035646 181 DSHLKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLP 259 (584)
Q Consensus 181 ~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~ 259 (584)
..-...|..+|. .+=....++.|+|.+|+||||||.+++......-..++|+. .....+ .+. ++.+ +..
T Consensus 365 ~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis----~E~s~~--~~~---a~~l-Gvd 434 (2050)
T 3cmu_A 365 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALD--PIY---ARKL-GVD 434 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCC--HHH---HHHT-TCC
T ss_pred eCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----cCCCHH--HHH---HHHc-CCC
Confidence 334556666664 22222469999999999999999999987655444667775 222222 221 2332 221
Q ss_pred CC-----CCcChhhhHHHHHHHH-cCCCcEEEEeCCC
Q 035646 260 NN-----GIWNVYDGINIIGRRL-RHKKVLLIIDDVV 290 (584)
Q Consensus 260 ~~-----~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~ 290 (584)
.. ...+.++....+.... +.+.-++|+|.+.
T Consensus 435 ~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 435 IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 11 1234445555554443 3567799999883
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.76 E-value=0.064 Score=49.63 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=46.1
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcccccceEEEEechh-----hcccCChHHHHHHHHHHHhCCCCCCCcChhhhHHHHH
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVRE-----ISEEGGLTSLQNQLLSQLLKLPNNGIWNVYDGINIIG 274 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~-----~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 274 (584)
+|.|.|++|+||||.|+.++.++. ...+. .+. +.....+....+.++.. . ..-+.+.....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~is-tGdllR~~i~~~t~lg~~~~~~~~~---G---~lvpd~iv~~lv~ 69 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHIS-TGDILREAVQKGTPLGKKAKEYMER---G---ELVPDDLIIALIE 69 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEE-HHHHHHHHHHHTCHHHHHHHHHHHH---T---CCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEc-HHHHHHHHHHhcChhhhhHHHHHhc---C---CcCCHHHHHHHHH
Confidence 577899999999999999998652 12222 000 01111111122222221 1 1122234456667
Q ss_pred HHHcCCCcEEEEeCC-CCHHHHHHH
Q 035646 275 RRLRHKKVLLIIDDV-VDIKQLECL 298 (584)
Q Consensus 275 ~~L~~k~~LlVlDdv-~~~~~~~~l 298 (584)
+.+..... +|||.. .+..+.+.|
T Consensus 70 ~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 70 EVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HhhccCCc-eEecCCchhHHHHHHH
Confidence 77765544 689999 456665544
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.75 E-value=0.064 Score=52.72 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=22.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
++|+|.|+.|+||||||..++.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999999765
No 406
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.69 E-value=0.059 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+.|.|.|++|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999999764
No 407
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.67 E-value=0.12 Score=51.48 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=27.1
Q ss_pred CeeEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 543 ELRLLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 543 ~LryL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
+|++|++.++.++++|+. | ++.+|+.|+|+++ |+.++++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~ 267 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR 267 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence 677777777777777765 4 6777777777765 6666553
No 408
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.67 E-value=0.28 Score=50.92 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=32.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc-cceEEEEechhhcccCChHHHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF-EASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
..++|.|.+|+|||+|+.++++.+.... +.+++. .+++ +...+.++.+.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC--CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC--cchHHHHHHHHhhh
Confidence 5789999999999999999998764332 333333 2211 12234455555544
No 409
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.63 E-value=0.045 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.+++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999876543
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.59 E-value=0.092 Score=51.42 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=26.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccccc-ceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFE-ASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~w~~ 233 (584)
.+++|.|.+|+|||||+..++........ .+.|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 58999999999999999999986544322 344553
No 411
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.56 E-value=0.034 Score=54.49 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=19.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+|+|.|..|+||||+|+.+.....
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 412
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.56 E-value=0.074 Score=52.59 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=23.7
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
...+|+|.|..|+|||||++.+.....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357999999999999999999987654
No 413
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.56 E-value=0.094 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.240 Sum_probs=23.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+++|+|+.|+||||+++.++....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999987554
No 414
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.56 E-value=0.078 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.032 Sum_probs=22.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.++|.|.|+.|+||||||..++.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5789999999999999999999864
No 415
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.53 E-value=0.063 Score=50.18 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+++|.|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999987654
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.47 E-value=0.069 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.092 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 417
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.39 E-value=0.12 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999997665
No 418
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.34 E-value=0.13 Score=48.03 Aligned_cols=34 Identities=12% Similarity=-0.113 Sum_probs=25.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
-.|.+.|.||+||||+|...+......-..+.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 4578899999999999999998765442233333
No 419
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.32 E-value=0.093 Score=55.44 Aligned_cols=49 Identities=10% Similarity=-0.081 Sum_probs=34.8
Q ss_pred ccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 176 HLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+-|.+..+.+.+......+...+|.+.|++|+||||+|+.++.+...
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455555555666655322223478999999999999999999998753
No 420
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.30 E-value=0.19 Score=45.93 Aligned_cols=35 Identities=23% Similarity=0.122 Sum_probs=26.2
Q ss_pred EEEEEE-ecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGIC-VMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
++|+|+ +-||+||||+|..++......-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 68999999999999987665434455554
No 421
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.30 E-value=0.047 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=16.0
Q ss_pred EEEEEEecCCccHHHHHHHHH-hhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVY-DLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~-~~~ 222 (584)
.+++|+|+.|+|||||++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 543
No 422
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.29 E-value=0.27 Score=45.42 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=53.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCC-CCCcChhhhHHHHHHH
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPN-NGIWNVYDGINIIGRR 276 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~ 276 (584)
..+..++|..|.||||.+...+.+....-..++.+.-. .....+. ..+.+.+..... ....+..+ +.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~--~d~R~ge----~~i~s~~g~~~~a~~~~~~~~----~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC--IDNRYSE----EDVVSHNGLKVKAVPVSASKD----IFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSGGG----GGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec--cCCcchH----HHHHhhcCCeeEEeecCCHHH----HHHH
Confidence 47888999999999999999988765543334433211 0111111 223333211100 01111111 2222
Q ss_pred HcCCCcEEEEeCCC--CHHHHHHHhcCCCCCCCCcEEEEEccccc
Q 035646 277 LRHKKVLLIIDDVV--DIKQLECLAGKREWFGPGSRIVITSRDKH 319 (584)
Q Consensus 277 L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 319 (584)
+.++--+|++|.+. +.++++.+.... ..|..||+|-++.+
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 22334499999983 344454333211 23778999999653
No 423
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.25 E-value=0.16 Score=50.36 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=50.2
Q ss_pred ccccccccccEEEecCc--cCCC-CccccccCee-EEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccCCC
Q 035646 515 NSFLKMINLRMLLIRNL--QLPE-GLEYLSNELR-LLERHGYPLRSLPSN-F-QPDKIVELNMRYSRIEQMWCG 582 (584)
Q Consensus 515 ~~~~~~~~LrvL~L~~~--~lp~-~i~~l~~~Lr-yL~l~~~~l~~lP~~-i-~L~~L~~L~l~~s~i~~lp~~ 582 (584)
..|..+++|+.|+|.++ .+++ .+..+. +|+ .|.+.. .++.+++. | ++.+|++|+|++++|+.++.+
T Consensus 244 ~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHNLKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred hhhhCCCCCCEEECCcccceehHHHhhCCh-hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 67888888888888765 3443 456666 788 888877 78888754 5 788888888888888887764
No 424
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.22 E-value=0.37 Score=44.37 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFE 227 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 227 (584)
+-|+|-|.-|+||||+++.+++.....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998765554
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.22 E-value=0.16 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=24.1
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
...|+|.|+.|+||||+++.++.....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999987754
No 426
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.21 E-value=0.064 Score=48.87 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.8
Q ss_pred EEEEEecCCccHHHHHHHHHhhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998754
No 427
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.20 E-value=0.13 Score=49.38 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=26.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
++|+|.|-||+||||+|..++......-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57788899999999999999987665433455554
No 428
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.19 E-value=0.27 Score=49.63 Aligned_cols=28 Identities=21% Similarity=0.036 Sum_probs=23.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
..++|.|.+|+|||+|+.++++.+....
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 5789999999999999999998765433
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.17 E-value=0.21 Score=53.27 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=27.4
Q ss_pred HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 186 NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 186 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.+...|..+=....+++|.|.+|+|||||++.++.....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344444322122368999999999999999999975443
No 430
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.16 E-value=0.013 Score=63.52 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=32.5
Q ss_pred cccccccccEEEecCccCC----C----CccccccCeeEEEecCCCCCCCCCCC-CCCCceEEEcCC
Q 035646 516 SFLKMINLRMLLIRNLQLP----E----GLEYLSNELRLLERHGYPLRSLPSNF-QPDKIVELNMRY 573 (584)
Q Consensus 516 ~~~~~~~LrvL~L~~~~lp----~----~i~~l~~~LryL~l~~~~l~~lP~~i-~L~~L~~L~l~~ 573 (584)
.+..+++|+.|+|+++.+. . .+..++ +|++|++++|.+..+|..+ ++.+|++|++++
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 3345566666666655443 1 122344 6666666666666666555 666666666653
No 431
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.16 E-value=0.12 Score=62.16 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=56.8
Q ss_pred HHHHHHHhh-hcCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCCC-
Q 035646 184 LKNLRLLMD-KECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPNN- 261 (584)
Q Consensus 184 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~~- 261 (584)
...|..+|. .+=...+++.|+|.+|+||||||.+++......-..++|+. .....+. +. +..+ +....
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis----~E~s~~~--~~---a~~l-Gvd~~~ 437 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDP--IY---ARKL-GVDIDN 437 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCH--HH---HHHT-TCCGGG
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE----ccCchHH--HH---HHHc-CCCHHH
Confidence 455666664 22222469999999999999999999987655545677775 2222222 11 2232 11110
Q ss_pred ----CCcChhhhHHHHHHHH-cCCCcEEEEeCCC
Q 035646 262 ----GIWNVYDGINIIGRRL-RHKKVLLIIDDVV 290 (584)
Q Consensus 262 ----~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~ 290 (584)
...+.++....+.... +.+.-++|+|.+.
T Consensus 438 L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 438 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred eEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 1223444445454444 3567799999984
No 432
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.10 E-value=0.13 Score=46.67 Aligned_cols=25 Identities=20% Similarity=-0.094 Sum_probs=21.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++.|+|+.|+||||++..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988877653
No 433
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.10 E-value=0.11 Score=46.54 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.++++|.|..|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999999988654
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.07 E-value=0.08 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=22.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+|+|.|+.|+||||+++.++...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998765
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.99 E-value=0.13 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.055 Sum_probs=22.9
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...+++|+|++|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35699999999999999999999754
No 436
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.98 E-value=0.12 Score=50.78 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=28.3
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..++|+|+|-||+||||+|..++......-..++.++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678888899999999999999987655433445554
No 437
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.91 E-value=0.069 Score=55.25 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=22.9
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999998754
No 438
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.80 E-value=0.52 Score=48.03 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 176 HLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 176 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.++|....++++.+.+..-...-..|.|.|.+|+|||++|+.+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 46777777888877665433232345899999999999999888743
No 439
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.77 E-value=0.11 Score=47.82 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=24.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
.+|.|.|+.|+||||+|+.++.+..-.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 589999999999999999999987543
No 440
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=91.77 E-value=0.025 Score=57.70 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=46.5
Q ss_pred ccccccEEEecCccCC--------CCccccccCeeEEEecCCCCCC-----CCCCC-CCCCceEEEcCCCCccc
Q 035646 519 KMINLRMLLIRNLQLP--------EGLEYLSNELRLLERHGYPLRS-----LPSNF-QPDKIVELNMRYSRIEQ 578 (584)
Q Consensus 519 ~~~~LrvL~L~~~~lp--------~~i~~l~~~LryL~l~~~~l~~-----lP~~i-~L~~L~~L~l~~s~i~~ 578 (584)
...+|+.|+|++|.+. ..+...+ +|++|+|++|+|.. |+..+ .+.+|++|+|++|.|..
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4678999999998653 2345566 89999999998774 45666 77899999999998863
No 441
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.76 E-value=0.078 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=20.3
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999885
No 442
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.75 E-value=0.13 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.240 Sum_probs=23.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..+++|+|+.|+||||++..++..+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 57999999999999999999998654
No 443
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.69 E-value=0.1 Score=47.34 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.5
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999874
No 444
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.68 E-value=0.09 Score=49.88 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||.+.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 445
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.66 E-value=0.075 Score=49.23 Aligned_cols=23 Identities=26% Similarity=-0.019 Sum_probs=20.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998864
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.62 E-value=0.078 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999875
No 447
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.62 E-value=0.27 Score=45.56 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=24.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhccc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHN 225 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 225 (584)
...|.|.|+.|+||||+++.++......
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999877544
No 448
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.59 E-value=0.25 Score=49.51 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=23.8
Q ss_pred CceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
....+|+|+|.+|+|||||+..++....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999987543
No 449
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=91.53 E-value=0.06 Score=48.29 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=39.7
Q ss_pred ccccEEEecCccCCC----CccccccCeeEEEecCCC-CCCCC-CCC-CC----CCceEEEcCCCC-cc
Q 035646 521 INLRMLLIRNLQLPE----GLEYLSNELRLLERHGYP-LRSLP-SNF-QP----DKIVELNMRYSR-IE 577 (584)
Q Consensus 521 ~~LrvL~L~~~~lp~----~i~~l~~~LryL~l~~~~-l~~lP-~~i-~L----~~L~~L~l~~s~-i~ 577 (584)
.+|+.|||++|.+.+ .+..++ +|+.|+|++|. |+.-= ..+ .+ .+|++|||++|. |+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 369999999997654 355666 99999999994 54311 112 33 369999999985 54
No 450
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.50 E-value=0.35 Score=44.16 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=25.6
Q ss_pred EEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 200 MIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
.|+|-|.-|+||||.++.+++........+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 377889999999999999999876654444443
No 451
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.49 E-value=0.5 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
..++|+|+.|+|||||++.++.-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998863
No 452
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.49 E-value=0.14 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
..+++|.|+.|+|||||++.++.....
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 478999999999999999999987653
No 453
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.48 E-value=0.16 Score=49.47 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=26.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
++|+|.|-||+||||+|..++......-..+..++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57888999999999999999987654433344443
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.46 E-value=0.12 Score=48.90 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.6
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
..|+|.|..|+||||+++.++....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 6799999999999999999998763
No 455
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.44 E-value=1.5 Score=41.04 Aligned_cols=38 Identities=24% Similarity=0.125 Sum_probs=27.7
Q ss_pred chhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhh
Q 035646 180 IDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 180 R~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
|+...+.+..++... -+.|+|..|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~~-----~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS-----EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC-----CEEEEeCCCCCHHHHHHHHHHHc
Confidence 455555666665422 27789999999999999888765
No 456
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.43 E-value=1.1 Score=46.29 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=21.9
Q ss_pred CceEEEEEEecCCccHHHHHHHHHh
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
...++..|.|.+|.||||+..+.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3478999999999999999988875
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.40 E-value=0.31 Score=58.62 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=57.1
Q ss_pred HHHHHhhh-cCCceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEEechhhcccCChHHHHHHHHHHHhCCCC----
Q 035646 186 NLRLLMDK-ECNVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLANVREISEEGGLTSLQNQLLSQLLKLPN---- 260 (584)
Q Consensus 186 ~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~s~~~~~~~~~~~i~~~l~~~~~---- 260 (584)
.|...|.. +-...++|-|+|+.|+||||||.++.......-...+|++ .-...+.. + ++.+.-..+
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~----~e~~~~~~--~---~~~~Gv~~~~l~~ 1488 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPI--Y---ARKLGVDIDNLLC 1488 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHH--H---HHHTTCCGGGCEE
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cCCCCCHH--H---HHHcCCCHHHeEE
Confidence 45555552 2122479999999999999999999987666667778886 22222222 1 333221111
Q ss_pred CCCcChhhhHHHHHHHHc-CCCcEEEEeCC
Q 035646 261 NGIWNVYDGINIIGRRLR-HKKVLLIIDDV 289 (584)
Q Consensus 261 ~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv 289 (584)
...+.-++....+...++ +..-++|+|-|
T Consensus 1489 ~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1489 SQPDTGEQALEICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred eCCCcHHHHHHHHHHHHHcCCCCEEEEccH
Confidence 012233445555555554 56779999988
No 458
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.39 E-value=1.3 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|.|.+|+|||||...+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 488999999999999999988643
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.36 E-value=0.12 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
.+|+|.|+.|+||||||..++.+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998653
No 460
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.35 E-value=0.47 Score=44.50 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=17.4
Q ss_pred EEEEEEecCCccHHHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVY 219 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~ 219 (584)
+.+.|.|..|+||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478999999999998766554
No 461
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.34 E-value=0.044 Score=49.67 Aligned_cols=86 Identities=12% Similarity=0.165 Sum_probs=59.6
Q ss_pred cceeEEEeccCcccccccccccccccccccccccEEEecCccCCC--------CccccccCeeEEEecCCCCCC-----C
Q 035646 491 TKTVEVIKLENFTEEAEMHFSTSSNSFLKMINLRMLLIRNLQLPE--------GLEYLSNELRLLERHGYPLRS-----L 557 (584)
Q Consensus 491 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~lp~--------~i~~l~~~LryL~l~~~~l~~-----l 557 (584)
...++.+.+.............+...+...++|+.|+|++|.+.+ .+...+ .|++|+|++|.|.. |
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHH
Confidence 456677776554122122222233667778899999999997643 333334 79999999998886 6
Q ss_pred CCCC-CCCCceEEEc--CCCCcc
Q 035646 558 PSNF-QPDKIVELNM--RYSRIE 577 (584)
Q Consensus 558 P~~i-~L~~L~~L~l--~~s~i~ 577 (584)
...+ ...+|++|+| +++.|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHhCCCceEEEecCCCCCCC
Confidence 6777 7889999999 778875
No 462
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.27 E-value=0.22 Score=47.85 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=62.4
Q ss_pred cccHHHHHHhhhcceEEEEeccCcccchhhHHHHHHHHHHhhcCCCcEEEeeeeccCcchhhcccchHHHHHHhHHHhhh
Q 035646 61 SISPGLFKAIEESKISIVVFSRSYAFSTWCLDELVHILECKNTNNQQMVYPIFYDVEPAVVRKQTETFQEAFAQYEEVFS 140 (584)
Q Consensus 61 ~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~~v~Pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~ 140 (584)
.....+.+.+.++++.|.|++-.-..+..+. ++. .+ + ...+-|+=+.|-.+
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-~l~-ll------~-k~~iivlNK~DL~~-------------------- 60 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATSAY-GVD-FS------R-KETIILLNKVDIAD-------------------- 60 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-TSC-CT------T-SEEEEEEECGGGSC--------------------
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-HHH-hc------C-CCcEEEEECccCCC--------------------
Confidence 3557899999999999999986655444442 122 11 2 34444444443211
Q ss_pred hhHHHHHHHHHHHHHHhhcccCcccCCCcccccccccccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHh
Q 035646 141 ENIEKVQKWRDALREVANISGWELKDMNESEFILEHLVGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~i~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+..+.|.+.+.+. |..+ . + +..-| ..+++|.+.+...- ..++++|.+|+|||||...+..
T Consensus 61 --~~~~~~~~~~~~~~----g~~v-~------i-Sa~~~--~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 61 --EKTTKKWVEFFKKQ----GKRV-I------T-THKGE--PRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp --HHHHHHHHHHHHHT----TCCE-E------E-CCTTS--CHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHc----CCeE-E------E-ECCCC--cCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhc
Confidence 01134555544321 2221 1 0 00111 12455655554211 4688999999999999998875
No 463
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.26 E-value=0.54 Score=48.97 Aligned_cols=52 Identities=21% Similarity=0.119 Sum_probs=33.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhccc-ccceEEEEechhhcccCChHHHHHHHHH
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSHN-FEASSCLANVREISEEGGLTSLQNQLLS 253 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~s~~~~~~~~~~~i~~ 253 (584)
..++|.|.+|+|||+|+.++++.+... -+.+++.- +++ +.....++..++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 578999999999999999999876443 34444442 221 22234555555543
No 464
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.22 E-value=0.13 Score=52.80 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=26.3
Q ss_pred HHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHh
Q 035646 186 NLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 186 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+.+.|........+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444443333457999999999999999999987
No 465
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.17 E-value=0.13 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
+.|+|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999863
No 466
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.16 E-value=0.1 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+|+|.|+.|+||||+|+.++...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998765
No 467
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.15 E-value=0.13 Score=45.33 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999986
No 468
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.14 E-value=0.21 Score=47.20 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=25.5
Q ss_pred EEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 201 IGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 201 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
|+|.|-||+||||+|..++......-..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999987766544455554
No 469
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.11 E-value=0.16 Score=53.26 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=26.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
..+++|+|..|+|||||++.++..+... ...+++
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 5799999999999999999999866433 334444
No 470
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.10 E-value=0.17 Score=53.87 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=24.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccc
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNF 226 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 226 (584)
..+|.++|++|.||||+|+.++......|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 46899999999999999999998764433
No 471
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.08 E-value=0.11 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||.+.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 472
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.05 E-value=0.22 Score=49.46 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=27.7
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..++...|-||+||||+|..++......-..+..++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 567778899999999999999987665544455554
No 473
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.04 E-value=1.3 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.|+|+|.+|+|||||...+...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999998874
No 474
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.03 E-value=0.096 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.3
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999885
No 475
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.00 E-value=0.097 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||.+.++--
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998863
No 476
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.98 E-value=0.11 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.2
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
...|+|.|..|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.91 E-value=0.12 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||.+.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.89 E-value=0.16 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=21.0
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
+-|.|.|.+|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57889999999999999999874
No 479
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.88 E-value=0.1 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||++.++--
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999998864
No 480
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.87 E-value=0.13 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEEecCCccHHHHHHHHHhh
Q 035646 200 MIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999863
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.82 E-value=0.1 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.82 E-value=0.097 Score=47.04 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEEecCCccHHHHHHHHHh
Q 035646 200 MIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 200 vv~I~G~gGiGKTtLA~~~~~ 220 (584)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 483
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.81 E-value=0.34 Score=48.65 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=27.8
Q ss_pred CceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 196 NVVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 196 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
....++.+.|-||+||||+|..++......-..+..++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567778899999999999999987655533444443
No 484
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.77 E-value=0.1 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999886
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.68 E-value=0.11 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.9
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||.+.++--
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999998863
No 486
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.67 E-value=0.12 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
..+++|+|+.|+|||||.+.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999886
No 487
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.66 E-value=0.11 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998763
No 488
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.65 E-value=0.13 Score=50.44 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=22.3
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
..+++|+|+.|+|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3689999999999999999998755
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.65 E-value=0.093 Score=54.42 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=26.6
Q ss_pred eEEEEEEecCCccHHHHHHHHHhhhcccccceEEE
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCL 232 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 232 (584)
.++|+|+|.+|+||||++..++......-..+..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 56899999999999999999998655432233444
No 490
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.58 E-value=0.18 Score=44.04 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=20.9
Q ss_pred eEEEEEEecCCccHHHHHHHHHhh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.-.|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999873
No 491
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.57 E-value=0.095 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEEEecCCccHHHHHHHHHhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDL 221 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~ 221 (584)
.+++|.|+.|+|||||.+.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998863
No 492
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.45 E-value=0.12 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|.|+.|+|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.41 E-value=0.15 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=21.5
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
-.++|.|++|+||||+|+.++.++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 494
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.40 E-value=0.12 Score=49.71 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEEEecCCccHHHHHHHHHhhh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLT 222 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~ 222 (584)
.+++|+|+.|+|||||.+.++.-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998643
No 495
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.39 E-value=0.24 Score=49.73 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=28.5
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhc--ccccceEEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTS--HNFEASSCLA 233 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~ 233 (584)
..+++.+.|-||+||||+|..++.... ..-..+..++
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 357889999999999999999998776 4434444444
No 496
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.36 E-value=0.27 Score=52.53 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=31.3
Q ss_pred ccchhhHHHHHHHhhhcCCceEEEEEEecCCccHHHHHHHHHhhhc
Q 035646 178 VGIDSHLKNLRLLMDKECNVVCMIGICVMGGIGKTTLAGVVYDLTS 223 (584)
Q Consensus 178 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 223 (584)
+-|.+..+.+.+......+...+|.+.|++|+||||+|+.+.....
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 3344444455554422222357899999999999999999998654
No 497
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.35 E-value=0.17 Score=45.31 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.0
Q ss_pred eEEEEEEecCCccHHHHHHHHHh
Q 035646 198 VCMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 198 ~~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999986
No 498
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.30 E-value=0.29 Score=48.79 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=28.6
Q ss_pred ceEEEEEEecCCccHHHHHHHHHhhhcccccceEEEE
Q 035646 197 VVCMIGICVMGGIGKTTLAGVVYDLTSHNFEASSCLA 233 (584)
Q Consensus 197 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 233 (584)
..+++.+.|-||+||||+|..++......-..+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578888999999999999999987766544455554
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.27 E-value=0.12 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEEecCCccHHHHHHHHHh
Q 035646 199 CMIGICVMGGIGKTTLAGVVYD 220 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~ 220 (584)
.+++|+|+.|+|||||.+.++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 500
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.26 E-value=0.12 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.3
Q ss_pred EEEEEEecCCccHHHHHHHHHhhhcc
Q 035646 199 CMIGICVMGGIGKTTLAGVVYDLTSH 224 (584)
Q Consensus 199 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 224 (584)
.+++|.|+.|+|||||.+.++--...
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 48999999999999999998875543
Done!