BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035647
(938 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 140/378 (37%), Gaps = 91/378 (24%)
Query: 178 VSEVRGRDEEMNILK--SKLLCEFGEEQ------------HAIQ-----------IISMV 212
VS G+D + I +LCE G Q HAIQ +++
Sbjct: 94 VSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIY 153
Query: 213 GMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK----AIIEALEGSAPNL 268
GM G GK+ LA D ++ C S I K ++ L+ L
Sbjct: 154 GMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 206
Query: 269 GELQSLLQHIYASI-------------VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRG 315
+ +S Q + +I R L+LDDVW D + F N
Sbjct: 207 DQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN-------Q 257
Query: 316 SKILVTTRNEKVV-RMMESTDVISIKE-LSEQECWWLFKRFAFFGRPPSECEQLVEIGQK 373
+IL+TTR++ V +M V+ ++ L ++ + F + E L
Sbjct: 258 CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHS 312
Query: 374 IVGNCKGLPLAAKTIGSLLRFKRTR----------EEWESVLNSEMWWFEELEKYLFAPL 423
I+ CKG PL IG+LLR R ++++ + S + +E L++ +
Sbjct: 313 IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDE----AM 368
Query: 424 LLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEIIGQEYFD- 482
+S L IK + ++ KD + L LW + +E+E I QE+ +
Sbjct: 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNK 421
Query: 483 ----CLATRSFFQDFVHD 496
C F ++HD
Sbjct: 422 SLLFCNRNGKSFCYYLHD 439
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 124/320 (38%), Gaps = 62/320 (19%)
Query: 209 ISMVGMGGIGKTTLAQFVYNDSCVINN-FDKRM-WVCVSDNFDEFRIAKAIIEALEGSAP 266
+++ GM G GK+ LA D ++ F + WV V + ++ L+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 204
Query: 267 NLGELQSLLQHIYASI-------------VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL 313
L + +S Q + +I R L+LDDVW W L
Sbjct: 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW----DSW-----VLKAFD 255
Query: 314 RGSKILVTTRNEKVV-RMMESTDVISIKE-LSEQECWWLFKRFAFFGRPPSECEQLVEIG 371
+IL+TTR++ V +M V+ ++ L +++ + F + L E
Sbjct: 256 SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQA 310
Query: 372 QKIVGNCKGLPLAAKTIGSLLRFKRTREEW----------ESVLNSEMWWFEELEKYLFA 421
I+ CKG PL IG+LLR R E+ + + S + +E L++
Sbjct: 311 HSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDE---- 366
Query: 422 PLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEIIGQEYF 481
+ +S L IK + ++ KD + L LW + +E+E I QE+
Sbjct: 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFV 419
Query: 482 D-----CLATRSFFQDFVHD 496
+ C F+ ++HD
Sbjct: 420 NKSLLFCDRNGKSFRYYLHD 439
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 139/378 (36%), Gaps = 91/378 (24%)
Query: 178 VSEVRGRDEEMNILK--SKLLCEFGEEQ------------HAIQ-----------IISMV 212
VS G+D + I +LCE G Q HAIQ +++
Sbjct: 101 VSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIY 160
Query: 213 GMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK----AIIEALEGSAPNL 268
GM G GK+ LA D ++ C S I K ++ L+ L
Sbjct: 161 GMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 213
Query: 269 GELQSLLQHIYASI-------------VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRG 315
+ +S Q + +I R L+LDDVW D + F N
Sbjct: 214 DQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLKAFDN-------Q 264
Query: 316 SKILVTTRNEKVV-RMMESTDVISIKE-LSEQECWWLFKRFAFFGRPPSECEQLVEIGQK 373
+IL+TT ++ V +M V+ ++ L ++ + F + E L
Sbjct: 265 CQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHS 319
Query: 374 IVGNCKGLPLAAKTIGSLLRFKRTR----------EEWESVLNSEMWWFEELEKYLFAPL 423
I+ CKG PL IG+LLR R ++++ + S + +E L++ +
Sbjct: 320 IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDE----AM 375
Query: 424 LLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEIIGQEYFD- 482
+S L IK + ++ KD + L LW + +E+E I QE+ +
Sbjct: 376 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNK 428
Query: 483 ----CLATRSFFQDFVHD 496
C F ++HD
Sbjct: 429 SLLFCNRNGKSFCYYLHD 446
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 126/320 (39%), Gaps = 62/320 (19%)
Query: 209 ISMVGMGGIGKTTLAQFVYNDSCVINN-FDKRM-WVCVSDNFDEFRIAKAIIEALEGSAP 266
+++ GM G GK+ LA D ++ F + WV V + ++ L+
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-----QDKSGLLMKLQNLCT 210
Query: 267 NLGELQSLLQHIYASI-------------VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL 313
L + +S Q + +I R L+LDDVW D + F +
Sbjct: 211 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLKAFDS------ 262
Query: 314 RGSKILVTTRNEKVV-RMMESTDVISIKE-LSEQECWWLFKRFAFFGRPPSECEQLVEIG 371
+IL+TTR++ V +M V+ ++ L +++ + F + L E
Sbjct: 263 -QCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQA 316
Query: 372 QKIVGNCKGLPLAAKTIGSLLRFKRTREEW----------ESVLNSEMWWFEELEKYLFA 421
I+ CKG PL IG+LLR R E+ + + S + +E L++
Sbjct: 317 HSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDE---- 372
Query: 422 PLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEIIGQEYF 481
+ +S L IK + ++ KD + L LW + +E+E I QE+
Sbjct: 373 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFV 425
Query: 482 D-----CLATRSFFQDFVHD 496
+ C F+ ++HD
Sbjct: 426 NKSLLFCDRNGKSFRYYLHD 445
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 10 VLEQLISAAVEETKERLRLVKGVGKEVKRLSDNFQAIQAVLIDAEQ--RQVKEAQVRRWL 67
+ LI E E +L KGV K ++ L ++ A LI + R+ ++Q + W
Sbjct: 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWA 61
Query: 68 EKLKDASYDMEDVLDECNTSRLKLLIEGVDDDDEN 102
+++++ SY +EDV+D + + ++G+ DD N
Sbjct: 62 DEVRELSYVIEDVVD-----KFLVQVDGIKSDDNN 91
>pdb|3HC7|A Chain A, Crystal Structure Of Lysin B From Mycobacteriophage D29
Length = 254
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 350 LFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTR--EEWESVLN 406
+ K F G S QL+E+GQ+ + +G+ LA I +L F R+R ++W + N
Sbjct: 187 VMKASGFIGGRDSVVAQLIELGQRPI--TEGIALAGAIIDALTFFARSRMGDKWPHLYN 243
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 825 IENHHXXXXXXXIVAFPKLKKLTLRGLYXXXXXXXXXXDIAVMPQLISLELGSCSKLKSL 884
I N I PKL++L LRG A + +LI L CS L +L
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI---LKDCSNLLTL 269
Query: 885 PVDLLRSQKLKMLEIYNC 902
P+D+ R +L+ L++ C
Sbjct: 270 PLDIHRLTQLEKLDLRGC 287
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 514 ARYLTKNEYLSIEVDGS---EVSQSLINTC-QEELRHSILFLGYN-ASLP 558
A YL +N L+I VD + + + ++ +C E+L H +L +GYN AS P
Sbjct: 126 AAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNP 175
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 3/112 (2%)
Query: 742 VNHEAISEALQAPPNIESLEMCYYKGKTALPSWV---VXXXXXXXXXXTHCNNCEIMPSL 798
++ E I E P ++ + + +GKT +P ++ V + I+ ++
Sbjct: 29 IDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQPNILAAI 88
Query: 799 GKLPSLEILQIIGMRSVKRVGDEFWGIENHHXXXXXXXIVAFPKLKKLTLRG 850
LP L+ + G SV+ G W + FP K L+ G
Sbjct: 89 RSLPILDAMLSRGFTSVRDAGGADWSLMQAVETGLVSGPRIFPSGKALSQTG 140
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 3/112 (2%)
Query: 742 VNHEAISEALQAPPNIESLEMCYYKGKTALPSWV---VXXXXXXXXXXTHCNNCEIMPSL 798
++ E I E P ++ + + +GKT +P ++ V + I+ ++
Sbjct: 29 IDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQPNILAAI 88
Query: 799 GKLPSLEILQIIGMRSVKRVGDEFWGIENHHXXXXXXXIVAFPKLKKLTLRG 850
LP L+ + G SV+ G W + FP K L+ G
Sbjct: 89 RSLPILDAMLSRGFTSVRDAGGADWSLMQAVETGLVSGPRIFPSGKALSQTG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,323,188
Number of Sequences: 62578
Number of extensions: 1015170
Number of successful extensions: 2590
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2577
Number of HSP's gapped (non-prelim): 20
length of query: 938
length of database: 14,973,337
effective HSP length: 108
effective length of query: 830
effective length of database: 8,214,913
effective search space: 6818377790
effective search space used: 6818377790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)