Query 035647
Match_columns 938
No_of_seqs 454 out of 4089
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.1E-83 1.5E-87 748.9 42.8 811 14-902 8-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-60 2.8E-65 594.8 46.8 656 174-907 179-908 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 9.4E-43 2E-47 373.5 13.5 278 184-468 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 5.4E-25 1.2E-29 276.4 14.6 379 542-935 140-585 (968)
5 PLN00113 leucine-rich repeat r 99.9 7.2E-25 1.6E-29 275.3 14.4 155 747-904 420-583 (968)
6 KOG0444 Cytoskeletal regulator 99.9 9.7E-26 2.1E-30 238.6 -6.8 316 542-906 55-376 (1255)
7 KOG4194 Membrane glycoprotein 99.9 2.3E-22 5E-27 212.3 4.8 316 542-903 102-427 (873)
8 KOG0444 Cytoskeletal regulator 99.8 5.1E-23 1.1E-27 218.2 -4.9 336 539-931 29-372 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 5.5E-22 1.2E-26 200.6 -4.0 212 543-790 92-308 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 7E-22 1.5E-26 199.9 -4.4 246 544-813 47-308 (565)
11 KOG4194 Membrane glycoprotein 99.8 1.5E-20 3.2E-25 198.8 1.0 337 542-932 78-427 (873)
12 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.7E-23 218.6 17.0 300 542-885 589-910 (1153)
13 KOG0618 Serine/threonine phosp 99.8 8.5E-21 1.8E-25 211.6 -5.1 352 544-935 47-466 (1081)
14 KOG0618 Serine/threonine phosp 99.6 3E-17 6.4E-22 183.7 -5.7 268 544-821 23-305 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 1.4E-14 3E-19 168.4 11.1 34 869-903 423-456 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 8.4E-14 1.8E-18 161.9 10.8 258 544-936 203-460 (788)
17 PRK04841 transcriptional regul 99.4 9E-12 2E-16 156.2 25.4 294 177-518 12-332 (903)
18 PRK15370 E3 ubiquitin-protein 99.4 1.7E-13 3.7E-18 160.6 8.1 31 543-575 179-209 (754)
19 PRK00411 cdc6 cell division co 99.4 1.3E-10 2.9E-15 130.4 27.6 318 175-507 26-374 (394)
20 KOG0617 Ras suppressor protein 99.4 1.7E-14 3.6E-19 129.7 -3.6 150 599-801 46-195 (264)
21 PRK15370 E3 ubiquitin-protein 99.4 4.3E-13 9.4E-18 157.2 6.0 223 542-852 199-426 (754)
22 KOG4237 Extracellular matrix p 99.3 4.5E-13 9.8E-18 136.6 3.5 364 541-931 66-498 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.3 1.8E-12 3.8E-17 154.6 6.3 310 542-887 545-866 (889)
24 KOG0617 Ras suppressor protein 99.3 5.2E-14 1.1E-18 126.6 -5.2 165 604-822 28-192 (264)
25 TIGR02928 orc1/cdc6 family rep 99.3 1.7E-09 3.8E-14 120.1 26.8 302 177-494 13-351 (365)
26 COG2909 MalT ATP-dependent tra 99.2 2E-09 4.3E-14 121.7 23.2 298 178-520 18-340 (894)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.3E-09 2.8E-14 115.5 20.8 183 205-392 42-242 (269)
28 PF01637 Arch_ATPase: Archaeal 99.2 4.7E-11 1E-15 123.9 9.0 195 181-387 1-233 (234)
29 KOG4237 Extracellular matrix p 99.1 4.9E-12 1.1E-16 129.2 -4.3 281 553-852 57-357 (498)
30 cd00116 LRR_RI Leucine-rich re 99.1 2.3E-11 4.9E-16 132.9 -0.5 92 839-932 219-318 (319)
31 PRK00080 ruvB Holliday junctio 99.1 2.6E-09 5.6E-14 115.9 15.4 279 178-494 24-311 (328)
32 TIGR00635 ruvB Holliday juncti 99.1 8.5E-09 1.8E-13 111.3 19.3 276 179-493 4-289 (305)
33 cd00116 LRR_RI Leucine-rich re 99.0 1.9E-11 4.1E-16 133.5 -2.3 65 602-667 16-92 (319)
34 PF05729 NACHT: NACHT domain 99.0 2.6E-09 5.7E-14 104.1 11.9 144 207-355 1-163 (166)
35 PTZ00112 origin recognition co 99.0 9.1E-08 2E-12 109.2 23.4 304 177-494 753-1087(1164)
36 KOG0532 Leucine-rich repeat (L 98.9 5.9E-11 1.3E-15 126.9 -4.8 189 542-790 75-271 (722)
37 KOG3207 Beta-tubulin folding c 98.9 6.3E-10 1.4E-14 115.7 1.8 218 601-879 113-337 (505)
38 COG2256 MGS1 ATPase related to 98.7 1.6E-07 3.4E-12 97.9 14.4 171 178-384 29-208 (436)
39 KOG1259 Nischarin, modulator o 98.7 3.5E-09 7.5E-14 104.5 -0.4 137 710-885 279-415 (490)
40 PRK06893 DNA replication initi 98.7 1.7E-07 3.7E-12 95.7 12.0 156 206-392 39-207 (229)
41 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.9E-07 6.2E-12 94.7 13.7 172 184-392 22-205 (226)
42 PRK13342 recombination factor 98.6 3.7E-07 8E-12 102.2 14.8 178 179-390 12-198 (413)
43 COG3899 Predicted ATPase [Gene 98.6 9.5E-07 2E-11 106.6 18.9 312 181-517 2-385 (849)
44 PF13401 AAA_22: AAA domain; P 98.6 5.9E-08 1.3E-12 90.2 5.9 118 205-324 3-125 (131)
45 PF14580 LRR_9: Leucine-rich r 98.6 1.6E-08 3.5E-13 96.6 2.0 131 751-902 15-150 (175)
46 KOG0532 Leucine-rich repeat (L 98.6 2.1E-09 4.5E-14 115.3 -4.6 158 606-821 72-229 (722)
47 PRK07003 DNA polymerase III su 98.5 3.2E-06 6.8E-11 96.7 18.9 184 179-389 16-222 (830)
48 KOG4341 F-box protein containi 98.5 8.3E-09 1.8E-13 107.0 -1.7 165 747-930 286-458 (483)
49 COG1474 CDC6 Cdc6-related prot 98.5 1E-05 2.2E-10 87.7 21.1 210 178-389 16-239 (366)
50 PTZ00202 tuzin; Provisional 98.5 3.3E-06 7.1E-11 89.8 16.3 170 174-355 257-434 (550)
51 PRK12402 replication factor C 98.5 1.8E-06 3.9E-11 94.9 15.4 198 179-387 15-225 (337)
52 PRK14961 DNA polymerase III su 98.5 3.3E-06 7.2E-11 92.7 17.3 180 179-385 16-217 (363)
53 PRK14963 DNA polymerase III su 98.5 5.3E-07 1.2E-11 102.0 10.1 197 179-385 14-214 (504)
54 TIGR02903 spore_lon_C ATP-depe 98.5 4.4E-05 9.5E-10 89.3 25.7 203 179-391 154-398 (615)
55 PRK04195 replication factor C 98.4 1.8E-05 3.9E-10 90.6 22.1 248 178-467 13-271 (482)
56 COG3903 Predicted ATPase [Gene 98.4 2.4E-07 5.2E-12 97.3 6.2 291 205-518 13-314 (414)
57 PRK14960 DNA polymerase III su 98.4 4.8E-06 1E-10 94.3 16.6 181 179-386 15-217 (702)
58 PRK05564 DNA polymerase III su 98.4 4.6E-06 9.9E-11 90.0 16.1 179 179-387 4-189 (313)
59 PF13173 AAA_14: AAA domain 98.4 7.7E-07 1.7E-11 81.9 8.7 119 207-347 3-127 (128)
60 cd00009 AAA The AAA+ (ATPases 98.4 1.1E-06 2.5E-11 83.5 10.1 125 182-326 1-131 (151)
61 COG4886 Leucine-rich repeat (L 98.4 1.2E-07 2.5E-12 106.7 3.6 105 558-666 109-219 (394)
62 PRK14949 DNA polymerase III su 98.4 5.6E-06 1.2E-10 96.7 16.9 183 179-388 16-220 (944)
63 PF14580 LRR_9: Leucine-rich r 98.4 8.1E-08 1.8E-12 91.8 1.2 134 711-878 15-150 (175)
64 PF05496 RuvB_N: Holliday junc 98.4 1.5E-06 3.2E-11 84.9 9.8 182 178-392 23-225 (233)
65 PF13191 AAA_16: AAA ATPase do 98.4 4.4E-07 9.6E-12 90.1 6.4 50 180-232 1-50 (185)
66 PRK00440 rfc replication facto 98.4 6.9E-06 1.5E-10 89.5 16.3 180 179-385 17-200 (319)
67 PLN03025 replication factor C 98.3 7.5E-06 1.6E-10 88.5 15.0 182 179-385 13-197 (319)
68 PRK12323 DNA polymerase III su 98.3 7.3E-06 1.6E-10 92.6 15.1 183 179-388 16-225 (700)
69 PRK06645 DNA polymerase III su 98.3 1.2E-05 2.7E-10 90.5 17.1 194 179-385 21-226 (507)
70 PRK14957 DNA polymerase III su 98.3 1.3E-05 2.7E-10 91.0 16.8 187 179-392 16-225 (546)
71 PRK14956 DNA polymerase III su 98.3 4.6E-06 1E-10 91.8 12.9 194 179-384 18-218 (484)
72 COG4886 Leucine-rich repeat (L 98.3 9.5E-07 2.1E-11 99.4 7.6 105 753-879 184-288 (394)
73 KOG2028 ATPase related to the 98.3 4.1E-06 8.8E-11 85.5 10.5 130 203-354 159-293 (554)
74 cd01128 rho_factor Transcripti 98.3 1.2E-06 2.7E-11 89.4 6.7 90 205-295 15-113 (249)
75 PRK13341 recombination factor 98.3 7E-06 1.5E-10 96.6 13.8 169 179-383 28-212 (725)
76 KOG1259 Nischarin, modulator o 98.3 8.6E-08 1.9E-12 94.8 -1.9 107 713-853 305-411 (490)
77 PRK08903 DnaA regulatory inact 98.3 1.3E-05 2.8E-10 82.3 14.0 153 205-392 41-203 (227)
78 PRK08727 hypothetical protein; 98.3 1.9E-05 4.1E-10 80.9 15.1 148 207-385 42-201 (233)
79 KOG3207 Beta-tubulin folding c 98.3 3.2E-07 7E-12 96.0 2.0 128 542-670 121-260 (505)
80 PF05621 TniB: Bacterial TniB 98.3 2.2E-05 4.7E-10 80.6 15.1 201 179-383 34-256 (302)
81 PRK07994 DNA polymerase III su 98.3 1.6E-05 3.4E-10 91.6 15.5 194 179-388 16-220 (647)
82 PRK14962 DNA polymerase III su 98.2 3.8E-05 8.2E-10 86.4 17.8 187 179-392 14-223 (472)
83 TIGR02397 dnaX_nterm DNA polym 98.2 4.1E-05 8.8E-10 84.8 17.7 183 179-389 14-219 (355)
84 PRK08691 DNA polymerase III su 98.2 8.2E-06 1.8E-10 93.4 12.1 182 179-387 16-219 (709)
85 PRK08084 DNA replication initi 98.2 3.4E-05 7.4E-10 79.1 15.4 156 206-392 45-213 (235)
86 PRK07471 DNA polymerase III su 98.2 4.4E-06 9.4E-11 90.8 9.3 197 179-389 19-239 (365)
87 PRK05896 DNA polymerase III su 98.2 2.5E-05 5.5E-10 88.6 15.6 196 179-390 16-223 (605)
88 KOG2227 Pre-initiation complex 98.2 5.2E-05 1.1E-09 80.8 16.6 215 176-392 147-376 (529)
89 PRK09087 hypothetical protein; 98.2 4.5E-05 9.8E-10 77.3 15.8 143 206-389 44-196 (226)
90 PRK09112 DNA polymerase III su 98.2 2.8E-05 6E-10 84.1 14.9 197 178-389 22-241 (351)
91 PF14516 AAA_35: AAA-like doma 98.2 0.00024 5.1E-09 76.9 22.0 202 177-395 9-246 (331)
92 KOG2120 SCF ubiquitin ligase, 98.2 5.9E-08 1.3E-12 96.1 -5.6 181 610-852 186-374 (419)
93 PRK14964 DNA polymerase III su 98.2 5.2E-05 1.1E-09 84.8 16.5 180 179-385 13-214 (491)
94 KOG1909 Ran GTPase-activating 98.1 3.6E-07 7.8E-12 93.1 -0.6 142 714-879 156-309 (382)
95 PRK14958 DNA polymerase III su 98.1 3.7E-05 8.1E-10 87.4 15.4 181 179-386 16-218 (509)
96 PRK14955 DNA polymerase III su 98.1 2.8E-05 6.2E-10 86.4 13.8 197 179-385 16-225 (397)
97 PRK07940 DNA polymerase III su 98.1 6.9E-05 1.5E-09 82.2 16.0 184 179-388 5-213 (394)
98 PRK14951 DNA polymerase III su 98.1 5.9E-05 1.3E-09 86.8 16.0 196 179-387 16-224 (618)
99 PRK14969 DNA polymerase III su 98.1 6.1E-05 1.3E-09 86.4 15.6 183 179-388 16-221 (527)
100 TIGR00678 holB DNA polymerase 98.1 8.6E-05 1.9E-09 73.6 14.8 91 284-384 95-187 (188)
101 PRK14087 dnaA chromosomal repl 98.1 4.7E-05 1E-09 85.5 14.3 171 206-392 141-323 (450)
102 PRK09111 DNA polymerase III su 98.1 7.3E-05 1.6E-09 86.3 16.1 197 179-388 24-233 (598)
103 PRK09376 rho transcription ter 98.1 7.9E-06 1.7E-10 86.8 7.3 89 205-294 168-265 (416)
104 PF00308 Bac_DnaA: Bacterial d 98.1 6.9E-05 1.5E-09 75.7 13.8 185 182-389 12-209 (219)
105 PRK05642 DNA replication initi 98.1 0.00012 2.6E-09 75.0 15.6 156 206-392 45-212 (234)
106 PRK15386 type III secretion pr 98.0 1.6E-05 3.5E-10 85.5 8.8 64 752-820 49-112 (426)
107 KOG0989 Replication factor C, 98.0 5.1E-05 1.1E-09 76.5 11.6 181 178-383 35-225 (346)
108 PRK14959 DNA polymerase III su 98.0 0.00012 2.6E-09 83.7 16.1 198 179-392 16-225 (624)
109 TIGR01242 26Sp45 26S proteasom 98.0 4.8E-05 1E-09 83.9 12.8 180 177-382 120-328 (364)
110 TIGR03345 VI_ClpV1 type VI sec 98.0 6.7E-05 1.5E-09 90.9 15.0 154 179-354 187-362 (852)
111 PRK14950 DNA polymerase III su 98.0 6.9E-05 1.5E-09 87.5 14.4 195 179-388 16-221 (585)
112 PRK14952 DNA polymerase III su 98.0 0.00019 4E-09 82.5 17.3 198 179-392 13-224 (584)
113 PRK11331 5-methylcytosine-spec 98.0 3.3E-05 7.2E-10 84.1 10.2 108 179-298 175-285 (459)
114 KOG2543 Origin recognition com 98.0 0.00034 7.4E-09 72.8 16.7 167 178-354 5-192 (438)
115 PRK07133 DNA polymerase III su 97.9 0.00022 4.7E-09 83.0 16.9 184 179-389 18-221 (725)
116 PRK14970 DNA polymerase III su 97.9 0.00021 4.7E-09 79.1 16.5 178 179-383 17-204 (367)
117 TIGR00767 rho transcription te 97.9 1.7E-05 3.7E-10 84.9 7.2 90 205-295 167-265 (415)
118 KOG2120 SCF ubiquitin ligase, 97.9 2.4E-07 5.1E-12 91.9 -6.4 165 707-903 202-374 (419)
119 KOG4341 F-box protein containi 97.9 5.2E-07 1.1E-11 93.9 -4.3 246 604-910 159-419 (483)
120 PRK08451 DNA polymerase III su 97.9 0.00034 7.4E-09 79.1 17.6 180 179-388 14-218 (535)
121 PRK14953 DNA polymerase III su 97.9 0.00037 8E-09 79.0 17.8 184 179-389 16-221 (486)
122 KOG1909 Ran GTPase-activating 97.9 1.8E-06 3.9E-11 88.1 -0.5 197 603-853 86-310 (382)
123 PRK07764 DNA polymerase III su 97.9 0.00022 4.7E-09 85.4 16.6 178 179-384 15-217 (824)
124 PRK14954 DNA polymerase III su 97.9 0.00023 5E-09 82.4 16.1 202 179-389 16-230 (620)
125 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 56.9 3.9 41 609-650 1-41 (44)
126 PF13855 LRR_8: Leucine rich r 97.9 6E-06 1.3E-10 64.5 1.9 57 609-666 1-59 (61)
127 PRK06305 DNA polymerase III su 97.9 0.00039 8.4E-09 78.3 16.8 182 179-388 17-223 (451)
128 COG0466 Lon ATP-dependent Lon 97.9 0.00017 3.7E-09 81.2 13.3 167 177-355 321-508 (782)
129 TIGR02639 ClpA ATP-dependent C 97.9 0.00014 3E-09 87.7 13.8 155 179-355 182-358 (731)
130 KOG2004 Mitochondrial ATP-depe 97.8 0.00064 1.4E-08 76.3 17.5 167 177-355 409-596 (906)
131 PRK14971 DNA polymerase III su 97.8 0.00036 7.8E-09 81.4 16.6 179 179-385 17-219 (614)
132 COG2255 RuvB Holliday junction 97.8 0.00051 1.1E-08 68.7 15.0 179 179-390 26-225 (332)
133 TIGR00362 DnaA chromosomal rep 97.8 0.00052 1.1E-08 77.1 17.1 159 206-386 136-308 (405)
134 CHL00181 cbbX CbbX; Provisiona 97.8 0.00088 1.9E-08 70.7 17.6 136 206-357 59-211 (287)
135 KOG0531 Protein phosphatase 1, 97.8 5.1E-06 1.1E-10 93.5 0.7 65 603-669 89-153 (414)
136 PHA02544 44 clamp loader, smal 97.8 0.00022 4.7E-09 77.4 13.2 149 178-353 20-171 (316)
137 TIGR02881 spore_V_K stage V sp 97.8 0.00037 8.1E-09 73.0 14.2 162 180-357 7-193 (261)
138 CHL00095 clpC Clp protease ATP 97.8 0.00018 4E-09 87.7 13.3 154 179-353 179-352 (821)
139 PF05673 DUF815: Protein of un 97.8 0.00036 7.8E-09 69.4 12.8 123 177-326 25-152 (249)
140 PRK03992 proteasome-activating 97.8 0.0002 4.2E-09 79.4 12.3 159 178-357 130-317 (389)
141 PRK06647 DNA polymerase III su 97.7 0.00091 2E-08 77.1 17.6 193 179-387 16-219 (563)
142 PRK14948 DNA polymerase III su 97.7 0.00081 1.7E-08 78.4 17.3 196 179-388 16-222 (620)
143 PF13855 LRR_8: Leucine rich r 97.7 4.4E-05 9.6E-10 59.6 4.8 59 841-903 1-60 (61)
144 PRK14088 dnaA chromosomal repl 97.7 0.00048 1E-08 77.4 14.8 159 206-385 130-302 (440)
145 PRK14086 dnaA chromosomal repl 97.7 0.00059 1.3E-08 77.8 15.3 157 207-383 315-483 (617)
146 PRK06620 hypothetical protein; 97.7 0.00033 7.1E-09 70.4 11.9 135 207-386 45-187 (214)
147 PRK12422 chromosomal replicati 97.7 0.00042 9.1E-09 77.6 13.7 154 206-381 141-306 (445)
148 PLN03150 hypothetical protein; 97.7 5.7E-05 1.2E-09 89.1 7.0 55 757-811 420-475 (623)
149 PRK00149 dnaA chromosomal repl 97.7 0.00089 1.9E-08 76.2 16.4 159 206-386 148-320 (450)
150 PRK10787 DNA-binding ATP-depen 97.7 0.00036 7.8E-09 83.6 13.3 166 178-355 321-506 (784)
151 PRK14965 DNA polymerase III su 97.7 0.00093 2E-08 77.7 16.1 197 179-391 16-224 (576)
152 KOG0531 Protein phosphatase 1, 97.7 5.5E-06 1.2E-10 93.3 -2.1 63 605-670 114-176 (414)
153 PLN03150 hypothetical protein; 97.6 6.4E-05 1.4E-09 88.7 6.5 98 567-666 420-525 (623)
154 COG3267 ExeA Type II secretory 97.6 0.003 6.6E-08 62.7 16.8 184 205-392 50-249 (269)
155 PF00004 AAA: ATPase family as 97.6 0.00018 3.9E-09 66.7 8.2 21 209-229 1-21 (132)
156 TIGR02880 cbbX_cfxQ probable R 97.6 0.00064 1.4E-08 71.8 13.1 133 208-356 60-209 (284)
157 TIGR00763 lon ATP-dependent pr 97.6 0.0021 4.5E-08 78.1 19.1 165 179-355 320-505 (775)
158 PRK05563 DNA polymerase III su 97.6 0.0016 3.6E-08 75.3 17.4 191 179-385 16-217 (559)
159 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00044 9.6E-09 84.6 13.4 155 179-354 173-348 (852)
160 PRK08116 hypothetical protein; 97.6 0.00021 4.7E-09 74.5 9.0 104 207-325 115-221 (268)
161 PRK15386 type III secretion pr 97.6 0.0002 4.3E-09 77.3 8.4 43 775-820 48-90 (426)
162 PRK05707 DNA polymerase III su 97.5 0.0012 2.7E-08 70.8 14.0 97 284-388 105-203 (328)
163 PRK10865 protein disaggregatio 97.5 0.00063 1.4E-08 82.9 13.0 155 179-355 178-354 (857)
164 PRK07399 DNA polymerase III su 97.5 0.0021 4.6E-08 68.6 15.5 196 179-388 4-221 (314)
165 smart00382 AAA ATPases associa 97.5 0.00041 9E-09 65.1 9.1 87 207-297 3-90 (148)
166 PRK10536 hypothetical protein; 97.5 0.00086 1.9E-08 67.7 11.3 135 179-325 55-213 (262)
167 COG0542 clpA ATP-binding subun 97.5 0.0026 5.7E-08 74.1 16.6 133 179-324 491-643 (786)
168 TIGR03689 pup_AAA proteasome A 97.5 0.0019 4.2E-08 72.7 15.1 167 179-355 182-378 (512)
169 COG0593 DnaA ATPase involved i 97.5 0.0022 4.7E-08 69.6 14.5 136 205-359 112-261 (408)
170 KOG1859 Leucine-rich repeat pr 97.4 1.7E-06 3.6E-11 96.0 -10.0 111 747-880 179-291 (1096)
171 PRK11034 clpA ATP-dependent Cl 97.4 0.0003 6.5E-09 83.5 7.9 156 179-354 186-361 (758)
172 TIGR00602 rad24 checkpoint pro 97.4 0.00074 1.6E-08 78.2 10.1 51 178-229 83-133 (637)
173 KOG1514 Origin recognition com 97.3 0.0064 1.4E-07 68.7 16.5 208 179-392 396-625 (767)
174 COG1373 Predicted ATPase (AAA+ 97.3 0.0028 6.1E-08 70.2 13.9 119 208-351 39-163 (398)
175 PTZ00361 26 proteosome regulat 97.3 0.0013 2.7E-08 73.1 10.0 157 179-356 183-368 (438)
176 PRK12377 putative replication 97.2 0.00067 1.4E-08 69.4 7.1 102 206-324 101-205 (248)
177 TIGR02639 ClpA ATP-dependent C 97.2 0.0088 1.9E-07 72.3 17.4 133 179-324 454-603 (731)
178 PRK08058 DNA polymerase III su 97.2 0.006 1.3E-07 66.0 14.5 163 180-354 6-181 (329)
179 PF10443 RNA12: RNA12 protein; 97.2 0.021 4.5E-07 61.8 18.1 211 184-406 1-297 (431)
180 PRK08181 transposase; Validate 97.2 0.0011 2.4E-08 68.8 8.3 101 207-325 107-209 (269)
181 PRK10865 protein disaggregatio 97.2 0.0028 6.2E-08 77.3 12.9 138 179-324 568-720 (857)
182 KOG0741 AAA+-type ATPase [Post 97.2 0.012 2.5E-07 64.1 15.7 149 204-378 536-704 (744)
183 PF04665 Pox_A32: Poxvirus A32 97.2 0.00068 1.5E-08 68.2 6.0 37 206-244 13-49 (241)
184 PF07693 KAP_NTPase: KAP famil 97.2 0.017 3.7E-07 63.0 17.6 168 184-354 1-262 (325)
185 PRK08769 DNA polymerase III su 97.1 0.0011 2.4E-08 70.5 7.8 96 284-389 112-209 (319)
186 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0043 9.3E-08 76.1 14.1 137 179-324 565-717 (852)
187 KOG2982 Uncharacterized conser 97.1 0.00055 1.2E-08 68.6 5.0 81 714-810 198-287 (418)
188 TIGR02640 gas_vesic_GvpN gas v 97.1 0.011 2.4E-07 61.7 15.0 42 208-254 23-64 (262)
189 PRK06871 DNA polymerase III su 97.1 0.0025 5.4E-08 67.9 10.1 167 205-385 23-200 (325)
190 PF01695 IstB_IS21: IstB-like 97.1 0.0005 1.1E-08 66.9 4.5 101 206-325 47-150 (178)
191 PF13177 DNA_pol3_delta2: DNA 97.1 0.0049 1.1E-07 59.0 11.2 137 183-343 1-162 (162)
192 CHL00176 ftsH cell division pr 97.1 0.0066 1.4E-07 71.0 14.2 177 179-380 183-386 (638)
193 PRK07952 DNA replication prote 97.1 0.0022 4.8E-08 65.4 8.9 103 206-324 99-204 (244)
194 KOG1644 U2-associated snRNP A' 97.1 0.00075 1.6E-08 64.1 4.8 107 778-903 41-151 (233)
195 PRK06526 transposase; Provisio 97.0 0.00099 2.2E-08 68.7 6.2 101 206-325 98-201 (254)
196 PRK08118 topology modulation p 97.0 0.00031 6.8E-09 67.7 2.3 34 208-241 3-37 (167)
197 PRK06090 DNA polymerase III su 97.0 0.018 3.8E-07 61.3 15.5 93 284-388 107-201 (319)
198 PTZ00454 26S protease regulato 97.0 0.0081 1.8E-07 66.3 13.5 156 179-355 145-329 (398)
199 PRK06921 hypothetical protein; 97.0 0.003 6.5E-08 65.8 9.3 100 206-325 117-225 (266)
200 PRK04296 thymidine kinase; Pro 97.0 0.0011 2.4E-08 65.4 5.9 112 207-325 3-116 (190)
201 PRK08939 primosomal protein Dn 97.0 0.0036 7.9E-08 66.5 10.0 122 183-324 135-260 (306)
202 PF02562 PhoH: PhoH-like prote 97.0 0.0013 2.7E-08 64.7 6.0 132 183-326 4-157 (205)
203 COG1222 RPT1 ATP-dependent 26S 97.0 0.019 4E-07 59.9 14.2 176 180-382 152-357 (406)
204 KOG2982 Uncharacterized conser 97.0 0.00031 6.6E-09 70.4 1.4 195 713-928 69-283 (418)
205 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0022 4.8E-08 78.0 8.8 137 179-324 566-718 (852)
206 PRK07261 topology modulation p 96.9 0.0023 5E-08 62.0 7.3 34 208-241 2-36 (171)
207 KOG1859 Leucine-rich repeat pr 96.9 4E-05 8.6E-10 85.5 -5.6 40 608-649 186-225 (1096)
208 PRK09183 transposase/IS protei 96.9 0.0032 7E-08 65.4 8.7 101 207-325 103-206 (259)
209 TIGR01241 FtsH_fam ATP-depende 96.9 0.017 3.7E-07 66.6 15.4 179 178-381 54-259 (495)
210 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00099 2.2E-08 70.9 4.8 50 180-229 52-101 (361)
211 COG2812 DnaX DNA polymerase II 96.9 0.0018 3.9E-08 72.4 6.8 189 179-383 16-215 (515)
212 KOG3665 ZYG-1-like serine/thre 96.9 0.00046 1E-08 81.2 2.3 56 608-664 147-203 (699)
213 KOG0991 Replication factor C, 96.9 0.0026 5.6E-08 61.6 6.8 45 179-229 27-71 (333)
214 PRK06835 DNA replication prote 96.9 0.0026 5.6E-08 68.2 7.5 102 207-324 184-288 (329)
215 TIGR02237 recomb_radB DNA repa 96.8 0.0035 7.7E-08 63.3 8.1 86 205-294 11-106 (209)
216 PRK09361 radB DNA repair and r 96.8 0.0054 1.2E-07 62.8 9.1 86 205-294 22-116 (225)
217 PRK11034 clpA ATP-dependent Cl 96.8 0.0085 1.9E-07 71.5 11.8 134 179-323 458-606 (758)
218 KOG2228 Origin recognition com 96.7 0.012 2.6E-07 60.7 10.7 171 180-355 25-219 (408)
219 CHL00095 clpC Clp protease ATP 96.7 0.0049 1.1E-07 75.4 9.7 136 179-324 509-661 (821)
220 COG0470 HolB ATPase involved i 96.7 0.0072 1.6E-07 66.0 10.2 148 180-347 2-173 (325)
221 PRK07993 DNA polymerase III su 96.7 0.0058 1.3E-07 65.8 9.0 181 188-386 11-202 (334)
222 PRK12608 transcription termina 96.7 0.0073 1.6E-07 64.7 9.4 101 187-294 119-229 (380)
223 PF12799 LRR_4: Leucine Rich r 96.7 0.0012 2.6E-08 47.0 2.4 35 755-790 1-35 (44)
224 PF08423 Rad51: Rad51; InterP 96.7 0.0079 1.7E-07 62.4 9.2 88 206-294 38-142 (256)
225 COG1223 Predicted ATPase (AAA+ 96.6 0.027 5.8E-07 55.8 11.9 159 178-357 120-299 (368)
226 PRK05541 adenylylsulfate kinas 96.6 0.0068 1.5E-07 59.3 8.2 37 205-243 6-42 (176)
227 COG1484 DnaC DNA replication p 96.6 0.0047 1E-07 63.9 7.3 103 205-324 104-208 (254)
228 COG0542 clpA ATP-binding subun 96.6 0.0085 1.9E-07 70.0 9.9 155 179-354 170-345 (786)
229 KOG3665 ZYG-1-like serine/thre 96.6 0.0011 2.4E-08 78.1 2.8 160 608-789 121-285 (699)
230 COG5238 RNA1 Ran GTPase-activa 96.6 0.0023 5.1E-08 63.4 4.5 44 603-646 86-133 (388)
231 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.014 3E-07 55.0 9.4 114 207-326 3-139 (159)
232 PF13207 AAA_17: AAA domain; P 96.5 0.0017 3.8E-08 59.0 3.1 22 208-229 1-22 (121)
233 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.013 2.8E-07 60.5 10.0 89 205-294 18-124 (235)
234 COG4608 AppF ABC-type oligopep 96.5 0.015 3.3E-07 58.8 9.8 126 205-333 38-178 (268)
235 cd01393 recA_like RecA is a b 96.5 0.013 2.8E-07 60.1 9.5 87 205-294 18-123 (226)
236 PRK04132 replication factor C 96.5 0.043 9.2E-07 65.8 14.9 154 214-387 574-730 (846)
237 PLN00020 ribulose bisphosphate 96.5 0.033 7.1E-07 59.1 12.2 26 204-229 146-171 (413)
238 KOG4579 Leucine-rich repeat (L 96.5 0.00027 5.8E-09 62.5 -2.5 54 609-663 77-130 (177)
239 cd01394 radB RadB. The archaea 96.5 0.013 2.7E-07 59.7 9.3 43 205-249 18-60 (218)
240 PRK06964 DNA polymerase III su 96.5 0.043 9.2E-07 59.1 13.4 93 284-388 131-225 (342)
241 PF05659 RPW8: Arabidopsis bro 96.5 0.048 1E-06 50.6 11.9 84 1-84 1-85 (147)
242 cd03214 ABC_Iron-Siderophores_ 96.4 0.023 5E-07 55.7 10.5 121 205-328 24-161 (180)
243 PF07728 AAA_5: AAA domain (dy 96.4 0.0011 2.4E-08 62.0 1.1 87 209-308 2-88 (139)
244 TIGR02238 recomb_DMC1 meiotic 96.4 0.012 2.5E-07 62.9 8.7 89 205-294 95-200 (313)
245 KOG0735 AAA+-type ATPase [Post 96.4 0.031 6.8E-07 63.2 12.1 133 205-355 430-586 (952)
246 COG2607 Predicted ATPase (AAA+ 96.4 0.019 4.1E-07 56.4 9.1 121 177-324 58-182 (287)
247 KOG1644 U2-associated snRNP A' 96.4 0.0047 1E-07 58.9 4.7 105 716-851 43-150 (233)
248 PRK11889 flhF flagellar biosyn 96.4 0.026 5.7E-07 60.7 10.9 90 205-296 240-331 (436)
249 cd01120 RecA-like_NTPases RecA 96.4 0.011 2.4E-07 56.9 7.8 40 208-249 1-40 (165)
250 KOG0744 AAA+-type ATPase [Post 96.4 0.011 2.3E-07 60.5 7.5 79 206-294 177-259 (423)
251 CHL00195 ycf46 Ycf46; Provisio 96.4 0.04 8.7E-07 62.4 13.0 159 179-357 228-407 (489)
252 TIGR01243 CDC48 AAA family ATP 96.3 0.024 5.2E-07 68.8 12.1 179 179-382 178-381 (733)
253 TIGR01650 PD_CobS cobaltochela 96.3 0.099 2.1E-06 55.3 14.9 61 180-253 46-106 (327)
254 TIGR02012 tigrfam_recA protein 96.3 0.011 2.3E-07 62.8 7.5 83 205-294 54-142 (321)
255 COG1875 NYN ribonuclease and A 96.3 0.013 2.8E-07 61.2 7.8 133 181-326 226-389 (436)
256 COG2884 FtsE Predicted ATPase 96.3 0.038 8.3E-07 52.4 10.1 124 205-332 27-204 (223)
257 cd03228 ABCC_MRP_Like The MRP 96.2 0.023 4.9E-07 55.3 9.2 118 206-330 28-160 (171)
258 KOG1969 DNA replication checkp 96.2 0.01 2.2E-07 67.3 7.1 88 203-310 323-412 (877)
259 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.028 6E-07 52.8 9.2 106 205-329 25-131 (144)
260 PHA02244 ATPase-like protein 96.2 0.021 4.6E-07 61.0 9.2 22 208-229 121-142 (383)
261 PF00448 SRP54: SRP54-type pro 96.2 0.017 3.7E-07 57.1 8.1 88 206-295 1-93 (196)
262 TIGR02902 spore_lonB ATP-depen 96.2 0.015 3.2E-07 67.2 8.8 45 179-229 65-109 (531)
263 PRK06696 uridine kinase; Valid 96.2 0.006 1.3E-07 62.2 5.0 44 183-229 2-45 (223)
264 PF14532 Sigma54_activ_2: Sigm 96.2 0.0036 7.8E-08 58.4 3.0 108 182-325 1-110 (138)
265 PTZ00494 tuzin-like protein; P 96.2 0.44 9.6E-06 51.6 18.5 168 176-355 368-544 (664)
266 PRK08699 DNA polymerase III su 96.2 0.038 8.2E-07 59.4 11.0 71 284-354 112-184 (325)
267 PRK15455 PrkA family serine pr 96.1 0.0043 9.4E-08 69.5 3.9 50 180-229 77-126 (644)
268 cd00983 recA RecA is a bacter 96.1 0.0091 2E-07 63.3 6.1 83 205-294 54-142 (325)
269 COG1136 SalX ABC-type antimicr 96.1 0.048 1E-06 54.4 10.7 62 271-332 146-210 (226)
270 PLN03187 meiotic recombination 96.1 0.02 4.3E-07 61.5 8.7 58 205-263 125-186 (344)
271 cd03247 ABCC_cytochrome_bd The 96.1 0.03 6.5E-07 54.8 9.4 118 206-329 28-161 (178)
272 PRK06067 flagellar accessory p 96.1 0.021 4.6E-07 58.8 8.6 86 205-295 24-130 (234)
273 PRK09354 recA recombinase A; P 96.1 0.016 3.4E-07 62.0 7.7 83 205-294 59-147 (349)
274 COG4618 ArpD ABC-type protease 96.1 0.053 1.1E-06 59.3 11.5 57 275-331 480-538 (580)
275 cd01133 F1-ATPase_beta F1 ATP 96.1 0.027 5.9E-07 58.0 9.0 88 205-294 68-172 (274)
276 PLN03186 DNA repair protein RA 96.1 0.024 5.2E-07 61.0 9.1 58 205-263 122-183 (342)
277 PRK14722 flhF flagellar biosyn 96.1 0.017 3.7E-07 62.5 7.9 90 205-296 136-226 (374)
278 TIGR03499 FlhF flagellar biosy 96.0 0.022 4.7E-07 60.1 8.4 88 205-294 193-281 (282)
279 cd03238 ABC_UvrA The excision 96.0 0.027 5.9E-07 54.5 8.4 122 206-339 21-161 (176)
280 KOG1051 Chaperone HSP104 and r 96.0 0.025 5.5E-07 67.2 9.6 123 179-312 562-687 (898)
281 TIGR01243 CDC48 AAA family ATP 96.0 0.08 1.7E-06 64.3 14.3 178 179-382 453-657 (733)
282 TIGR02239 recomb_RAD51 DNA rep 96.0 0.026 5.6E-07 60.4 8.8 57 205-262 95-155 (316)
283 cd03223 ABCD_peroxisomal_ALDP 96.0 0.058 1.3E-06 52.0 10.5 117 206-329 27-152 (166)
284 PRK13695 putative NTPase; Prov 96.0 0.0082 1.8E-07 58.5 4.6 22 208-229 2-23 (174)
285 cd03222 ABC_RNaseL_inhibitor T 96.0 0.038 8.2E-07 53.6 9.0 103 206-329 25-136 (177)
286 PF07724 AAA_2: AAA domain (Cd 95.9 0.0053 1.2E-07 59.2 2.8 42 206-249 3-45 (171)
287 cd03216 ABC_Carb_Monos_I This 95.9 0.025 5.3E-07 54.4 7.3 117 206-329 26-146 (163)
288 KOG2035 Replication factor C, 95.8 0.11 2.4E-06 52.2 11.5 229 180-430 14-282 (351)
289 PRK05973 replicative DNA helic 95.8 0.065 1.4E-06 54.3 10.3 148 205-359 63-228 (237)
290 KOG1947 Leucine rich repeat pr 95.8 0.0015 3.3E-08 75.8 -1.6 43 867-909 400-444 (482)
291 cd01131 PilT Pilus retraction 95.8 0.017 3.6E-07 57.6 6.0 109 207-329 2-113 (198)
292 PRK13531 regulatory ATPase Rav 95.8 0.012 2.6E-07 65.3 5.2 153 179-354 20-193 (498)
293 KOG0731 AAA+-type ATPase conta 95.8 0.12 2.6E-06 60.3 13.4 181 179-384 311-520 (774)
294 PTZ00035 Rad51 protein; Provis 95.7 0.061 1.3E-06 58.1 10.4 58 205-263 117-178 (337)
295 TIGR02236 recomb_radA DNA repa 95.7 0.063 1.4E-06 57.9 10.6 57 205-262 94-154 (310)
296 PF13604 AAA_30: AAA domain; P 95.7 0.017 3.8E-07 57.3 5.7 111 206-328 18-134 (196)
297 cd03230 ABC_DR_subfamily_A Thi 95.6 0.031 6.8E-07 54.4 7.2 119 205-329 25-159 (173)
298 COG1618 Predicted nucleotide k 95.6 0.0079 1.7E-07 55.2 2.6 24 206-229 5-28 (179)
299 COG0468 RecA RecA/RadA recombi 95.6 0.05 1.1E-06 56.4 8.8 88 204-294 58-150 (279)
300 cd03246 ABCC_Protease_Secretio 95.6 0.043 9.2E-07 53.4 8.0 117 206-329 28-160 (173)
301 PRK00889 adenylylsulfate kinas 95.6 0.067 1.4E-06 52.2 9.4 25 205-229 3-27 (175)
302 PRK12723 flagellar biosynthesi 95.6 0.12 2.5E-06 56.8 12.0 90 205-296 173-265 (388)
303 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.082 1.8E-06 53.6 9.9 124 206-329 30-203 (254)
304 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.079 1.7E-06 54.5 10.2 49 205-257 20-68 (237)
305 cd00544 CobU Adenosylcobinamid 95.6 0.046 1E-06 52.5 7.8 78 209-294 2-82 (169)
306 KOG0734 AAA+-type ATPase conta 95.5 0.02 4.3E-07 62.5 5.6 53 179-231 304-362 (752)
307 COG1102 Cmk Cytidylate kinase 95.5 0.026 5.7E-07 51.9 5.5 44 208-264 2-45 (179)
308 KOG0733 Nuclear AAA ATPase (VC 95.5 0.045 9.8E-07 60.9 8.4 97 179-295 190-292 (802)
309 PRK04301 radA DNA repair and r 95.5 0.082 1.8E-06 57.1 10.5 57 205-262 101-161 (317)
310 PRK05703 flhF flagellar biosyn 95.5 0.075 1.6E-06 59.4 10.4 89 206-296 221-310 (424)
311 PRK05800 cobU adenosylcobinami 95.5 0.014 3E-07 56.3 3.9 80 208-294 3-85 (170)
312 TIGR00708 cobA cob(I)alamin ad 95.4 0.091 2E-06 50.1 9.1 119 206-326 5-141 (173)
313 KOG2123 Uncharacterized conser 95.4 0.00093 2E-08 66.4 -4.4 83 711-813 15-99 (388)
314 TIGR01817 nifA Nif-specific re 95.4 0.059 1.3E-06 63.0 9.5 64 177-246 194-257 (534)
315 PRK12727 flagellar biosynthesi 95.4 0.066 1.4E-06 60.1 9.2 89 205-295 349-438 (559)
316 COG0563 Adk Adenylate kinase a 95.4 0.024 5.1E-07 55.0 5.1 22 208-229 2-23 (178)
317 PRK08533 flagellar accessory p 95.3 0.086 1.9E-06 53.8 9.4 49 205-257 23-71 (230)
318 cd01122 GP4d_helicase GP4d_hel 95.3 0.1 2.3E-06 55.0 10.5 54 205-261 29-82 (271)
319 TIGR02974 phageshock_pspF psp 95.3 0.036 7.9E-07 59.9 6.9 45 181-229 1-45 (329)
320 PRK11608 pspF phage shock prot 95.3 0.039 8.6E-07 59.6 7.2 61 180-246 7-67 (326)
321 KOG2739 Leucine-rich acidic nu 95.3 0.005 1.1E-07 61.3 0.3 64 605-668 61-128 (260)
322 COG5238 RNA1 Ran GTPase-activa 95.3 0.015 3.2E-07 58.0 3.4 87 715-812 185-282 (388)
323 PF13238 AAA_18: AAA domain; P 95.3 0.012 2.7E-07 53.9 2.9 21 209-229 1-21 (129)
324 PRK14974 cell division protein 95.3 0.077 1.7E-06 57.0 9.1 89 205-296 139-233 (336)
325 PRK12724 flagellar biosynthesi 95.3 0.039 8.5E-07 60.2 6.9 25 205-229 222-246 (432)
326 COG0464 SpoVK ATPases of the A 95.3 0.17 3.7E-06 58.6 12.8 133 204-356 274-424 (494)
327 cd03115 SRP The signal recogni 95.3 0.053 1.1E-06 52.8 7.4 22 208-229 2-23 (173)
328 TIGR00959 ffh signal recogniti 95.2 0.067 1.5E-06 59.4 8.8 25 205-229 98-122 (428)
329 cd03229 ABC_Class3 This class 95.2 0.043 9.3E-07 53.7 6.4 121 206-329 26-165 (178)
330 PF00560 LRR_1: Leucine Rich R 95.2 0.012 2.5E-07 34.8 1.5 18 635-652 2-19 (22)
331 PRK15429 formate hydrogenlyase 95.2 0.055 1.2E-06 65.3 8.6 135 179-325 376-521 (686)
332 PRK06547 hypothetical protein; 95.2 0.025 5.5E-07 54.6 4.6 26 204-229 13-38 (172)
333 COG0572 Udk Uridine kinase [Nu 95.1 0.036 7.8E-07 54.6 5.6 78 204-286 6-85 (218)
334 cd02019 NK Nucleoside/nucleoti 95.1 0.015 3.1E-07 46.5 2.4 22 208-229 1-22 (69)
335 PF08433 KTI12: Chromatin asso 95.1 0.057 1.2E-06 56.2 7.4 23 207-229 2-24 (270)
336 PRK07667 uridine kinase; Provi 95.1 0.026 5.7E-07 56.0 4.8 38 188-229 3-40 (193)
337 cd03245 ABCC_bacteriocin_expor 95.1 0.15 3.2E-06 51.9 10.5 25 205-229 29-53 (220)
338 KOG0733 Nuclear AAA ATPase (VC 95.1 0.28 6.1E-06 54.9 12.8 146 206-372 545-710 (802)
339 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.061 1.3E-06 56.1 7.6 40 205-246 35-74 (259)
340 cd01125 repA Hexameric Replica 95.1 0.13 2.9E-06 53.0 10.1 22 208-229 3-24 (239)
341 PRK10867 signal recognition pa 95.1 0.06 1.3E-06 59.8 7.9 25 205-229 99-123 (433)
342 cd03369 ABCC_NFT1 Domain 2 of 95.1 0.22 4.7E-06 50.2 11.4 23 206-228 34-56 (207)
343 KOG4579 Leucine-rich repeat (L 95.1 0.0056 1.2E-07 54.4 -0.2 87 543-651 54-141 (177)
344 cd02025 PanK Pantothenate kina 95.1 0.074 1.6E-06 53.8 7.9 22 208-229 1-22 (220)
345 PF13671 AAA_33: AAA domain; P 95.1 0.018 3.9E-07 54.0 3.2 22 208-229 1-22 (143)
346 COG1126 GlnQ ABC-type polar am 95.1 0.28 6.1E-06 47.8 11.1 124 205-331 27-202 (240)
347 PRK13539 cytochrome c biogenes 95.0 0.12 2.5E-06 52.1 9.3 62 278-342 138-201 (207)
348 PF00485 PRK: Phosphoribulokin 95.0 0.017 3.7E-07 57.4 3.1 22 208-229 1-22 (194)
349 COG1703 ArgK Putative periplas 95.0 0.03 6.4E-07 57.2 4.6 64 189-256 38-101 (323)
350 TIGR00150 HI0065_YjeE ATPase, 95.0 0.033 7.2E-07 50.7 4.6 40 186-229 6-45 (133)
351 PTZ00088 adenylate kinase 1; P 95.0 0.023 5E-07 57.6 4.0 22 208-229 8-29 (229)
352 PRK05439 pantothenate kinase; 95.0 0.12 2.6E-06 54.7 9.4 41 187-229 69-109 (311)
353 PRK08233 hypothetical protein; 95.0 0.019 4.1E-07 56.5 3.3 24 206-229 3-26 (182)
354 PF08298 AAA_PrkA: PrkA AAA do 95.0 0.032 6.9E-07 59.0 5.0 51 179-229 61-111 (358)
355 PF03308 ArgK: ArgK protein; 95.0 0.041 8.9E-07 55.4 5.5 60 187-250 14-73 (266)
356 PRK09270 nucleoside triphospha 95.0 0.11 2.4E-06 53.2 9.0 26 204-229 31-56 (229)
357 PRK00771 signal recognition pa 95.0 0.085 1.9E-06 58.8 8.6 57 205-263 94-151 (437)
358 cd02027 APSK Adenosine 5'-phos 95.0 0.059 1.3E-06 50.8 6.4 22 208-229 1-22 (149)
359 cd00267 ABC_ATPase ABC (ATP-bi 94.9 0.054 1.2E-06 51.7 6.2 117 206-330 25-145 (157)
360 cd01121 Sms Sms (bacterial rad 94.9 0.11 2.3E-06 56.9 9.1 82 205-294 81-167 (372)
361 PF01583 APS_kinase: Adenylyls 94.9 0.031 6.8E-07 52.3 4.3 36 206-243 2-37 (156)
362 TIGR00390 hslU ATP-dependent p 94.9 0.067 1.4E-06 58.2 7.3 51 179-229 12-70 (441)
363 KOG0739 AAA+-type ATPase [Post 94.9 5.3 0.00011 41.0 22.0 94 180-295 134-235 (439)
364 cd03215 ABC_Carb_Monos_II This 94.9 0.19 4.1E-06 49.3 10.1 24 206-229 26-49 (182)
365 PRK06002 fliI flagellum-specif 94.9 0.12 2.7E-06 57.1 9.5 87 205-294 164-263 (450)
366 PTZ00301 uridine kinase; Provi 94.9 0.02 4.4E-07 57.1 3.2 25 205-229 2-26 (210)
367 PRK05480 uridine/cytidine kina 94.9 0.022 4.7E-07 57.5 3.4 25 205-229 5-29 (209)
368 TIGR00235 udk uridine kinase. 94.9 0.022 4.9E-07 57.3 3.5 25 205-229 5-29 (207)
369 PF10236 DAP3: Mitochondrial r 94.8 0.64 1.4E-05 49.7 14.7 48 336-384 258-305 (309)
370 TIGR00554 panK_bact pantothena 94.8 0.12 2.7E-06 54.1 8.9 25 204-228 60-84 (290)
371 PRK04328 hypothetical protein; 94.8 0.082 1.8E-06 54.8 7.5 41 205-247 22-62 (249)
372 KOG2739 Leucine-rich acidic nu 94.8 0.015 3.4E-07 58.0 2.0 64 751-814 61-128 (260)
373 KOG0736 Peroxisome assembly fa 94.8 0.37 8E-06 55.5 12.9 98 179-296 672-775 (953)
374 COG2274 SunT ABC-type bacterio 94.8 0.19 4.1E-06 59.8 11.3 24 205-228 498-521 (709)
375 KOG2123 Uncharacterized conser 94.8 0.0011 2.4E-08 65.9 -5.9 83 708-809 34-124 (388)
376 TIGR00064 ftsY signal recognit 94.8 0.14 2.9E-06 53.7 9.1 89 205-296 71-165 (272)
377 PRK06762 hypothetical protein; 94.8 0.024 5.1E-07 54.9 3.2 24 206-229 2-25 (166)
378 PHA00729 NTP-binding motif con 94.7 0.038 8.2E-07 55.2 4.6 25 205-229 16-40 (226)
379 PRK10733 hflB ATP-dependent me 94.7 0.19 4.2E-06 59.7 11.3 158 179-356 152-336 (644)
380 COG0396 sufC Cysteine desulfur 94.7 0.29 6.3E-06 48.2 10.3 64 272-337 149-216 (251)
381 cd03281 ABC_MSH5_euk MutS5 hom 94.7 0.043 9.4E-07 55.2 5.0 23 206-228 29-51 (213)
382 PRK03839 putative kinase; Prov 94.7 0.022 4.8E-07 55.9 2.9 22 208-229 2-23 (180)
383 cd03263 ABC_subfamily_A The AB 94.7 0.18 4E-06 51.3 9.8 24 206-229 28-51 (220)
384 PF07726 AAA_3: ATPase family 94.7 0.016 3.5E-07 51.7 1.6 27 209-237 2-28 (131)
385 cd03217 ABC_FeS_Assembly ABC-t 94.7 0.17 3.8E-06 50.5 9.4 120 205-329 25-168 (200)
386 cd03251 ABCC_MsbA MsbA is an e 94.7 0.31 6.7E-06 50.2 11.5 24 206-229 28-51 (234)
387 TIGR02858 spore_III_AA stage I 94.7 0.26 5.7E-06 51.3 10.8 116 205-329 110-233 (270)
388 COG0467 RAD55 RecA-superfamily 94.6 0.059 1.3E-06 56.4 6.1 52 204-259 21-72 (260)
389 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.12 2.7E-06 52.9 8.4 40 205-246 19-58 (229)
390 PF00154 RecA: recA bacterial 94.6 0.045 9.7E-07 57.9 5.0 83 205-294 52-140 (322)
391 cd03244 ABCC_MRP_domain2 Domai 94.6 0.23 5E-06 50.6 10.3 24 206-229 30-53 (221)
392 PRK12726 flagellar biosynthesi 94.6 0.13 2.9E-06 55.3 8.5 90 205-296 205-296 (407)
393 PRK05986 cob(I)alamin adenolsy 94.6 0.12 2.7E-06 50.0 7.6 120 205-326 21-159 (191)
394 PF03969 AFG1_ATPase: AFG1-lik 94.6 0.12 2.7E-06 56.2 8.5 103 204-324 60-167 (362)
395 PF00560 LRR_1: Leucine Rich R 94.6 0.019 4.1E-07 33.9 1.3 22 610-632 1-22 (22)
396 KOG0730 AAA+-type ATPase [Post 94.6 0.18 4E-06 57.1 9.8 51 179-229 434-491 (693)
397 PRK05022 anaerobic nitric oxid 94.6 0.087 1.9E-06 61.0 7.8 64 178-247 186-249 (509)
398 PRK04040 adenylate kinase; Pro 94.5 0.028 6.1E-07 55.3 3.2 24 206-229 2-25 (188)
399 COG2842 Uncharacterized ATPase 94.5 0.56 1.2E-05 48.3 12.4 95 206-308 94-188 (297)
400 cd03254 ABCC_Glucan_exporter_l 94.5 0.26 5.5E-06 50.6 10.5 24 206-229 29-52 (229)
401 cd03233 ABC_PDR_domain1 The pl 94.5 0.24 5.3E-06 49.5 10.0 25 205-229 32-56 (202)
402 COG1428 Deoxynucleoside kinase 94.5 0.024 5.3E-07 54.9 2.6 24 206-229 4-27 (216)
403 TIGR03740 galliderm_ABC gallid 94.5 0.3 6.4E-06 49.8 10.9 24 206-229 26-49 (223)
404 PRK05201 hslU ATP-dependent pr 94.5 0.08 1.7E-06 57.7 6.7 51 179-229 15-73 (443)
405 PF00910 RNA_helicase: RNA hel 94.5 0.021 4.5E-07 50.4 2.0 21 209-229 1-21 (107)
406 PRK00625 shikimate kinase; Pro 94.5 0.025 5.5E-07 54.6 2.7 22 208-229 2-23 (173)
407 COG4181 Predicted ABC-type tra 94.5 0.24 5.3E-06 46.1 8.8 85 249-333 122-215 (228)
408 cd03283 ABC_MutS-like MutS-lik 94.5 0.2 4.3E-06 49.8 9.2 22 207-228 26-47 (199)
409 PF12775 AAA_7: P-loop contain 94.5 0.03 6.4E-07 58.6 3.4 24 206-229 33-56 (272)
410 PRK06217 hypothetical protein; 94.5 0.058 1.3E-06 53.0 5.3 22 208-229 3-24 (183)
411 PF06309 Torsin: Torsin; Inte 94.4 0.064 1.4E-06 47.8 4.8 50 180-229 26-76 (127)
412 cd03282 ABC_MSH4_euk MutS4 hom 94.4 0.063 1.4E-06 53.5 5.4 120 206-332 29-158 (204)
413 COG1066 Sms Predicted ATP-depe 94.4 0.077 1.7E-06 56.7 6.2 83 205-296 92-179 (456)
414 cd03213 ABCG_EPDR ABCG transpo 94.4 0.3 6.4E-06 48.5 10.2 119 205-326 34-172 (194)
415 COG2401 ABC-type ATPase fused 94.4 0.052 1.1E-06 57.6 4.8 158 178-336 370-579 (593)
416 cd03253 ABCC_ATM1_transporter 94.4 0.28 6.1E-06 50.5 10.4 55 276-330 146-201 (236)
417 TIGR01360 aden_kin_iso1 adenyl 94.4 0.032 6.9E-07 55.2 3.2 25 205-229 2-26 (188)
418 PRK07132 DNA polymerase III su 94.4 1.1 2.3E-05 47.5 14.7 134 205-354 17-161 (299)
419 cd03252 ABCC_Hemolysin The ABC 94.3 0.42 9.2E-06 49.2 11.6 25 205-229 27-51 (237)
420 PF00006 ATP-synt_ab: ATP synt 94.3 0.1 2.2E-06 52.2 6.6 85 206-294 15-114 (215)
421 cd01135 V_A-ATPase_B V/A-type 94.3 0.22 4.7E-06 51.4 8.9 90 205-294 68-175 (276)
422 TIGR02655 circ_KaiC circadian 94.3 0.24 5.1E-06 56.9 10.4 53 205-262 262-314 (484)
423 PF13481 AAA_25: AAA domain; P 94.3 0.17 3.6E-06 50.3 8.2 41 207-247 33-81 (193)
424 PRK14723 flhF flagellar biosyn 94.2 0.26 5.6E-06 58.4 10.6 88 206-295 185-273 (767)
425 PRK14721 flhF flagellar biosyn 94.2 0.19 4.2E-06 55.5 9.1 89 205-295 190-279 (420)
426 PRK14532 adenylate kinase; Pro 94.2 0.14 3E-06 50.7 7.4 21 209-229 3-23 (188)
427 PRK13543 cytochrome c biogenes 94.2 0.35 7.5E-06 48.9 10.4 24 206-229 37-60 (214)
428 cd03237 ABC_RNaseL_inhibitor_d 94.2 0.3 6.6E-06 50.4 10.1 125 206-330 25-181 (246)
429 PF01078 Mg_chelatase: Magnesi 94.2 0.077 1.7E-06 52.0 5.2 42 179-228 3-44 (206)
430 TIGR03498 FliI_clade3 flagella 94.2 0.18 3.8E-06 55.9 8.7 87 205-294 139-239 (418)
431 cd03231 ABC_CcmA_heme_exporter 94.2 0.28 6.1E-06 49.1 9.5 25 205-229 25-49 (201)
432 COG1120 FepC ABC-type cobalami 94.1 0.43 9.2E-06 48.8 10.6 125 205-331 27-205 (258)
433 PRK06995 flhF flagellar biosyn 94.1 0.26 5.5E-06 55.5 9.9 88 206-295 256-344 (484)
434 TIGR03522 GldA_ABC_ATP gliding 94.1 0.35 7.5E-06 51.8 10.7 25 205-229 27-51 (301)
435 PRK03846 adenylylsulfate kinas 94.1 0.11 2.5E-06 51.7 6.5 26 204-229 22-47 (198)
436 PRK09544 znuC high-affinity zi 94.1 0.3 6.6E-06 50.7 9.8 25 205-229 29-53 (251)
437 cd03232 ABC_PDR_domain2 The pl 94.1 0.25 5.4E-06 49.0 8.9 24 205-228 32-55 (192)
438 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.031 6.8E-07 55.0 2.4 22 208-229 1-22 (183)
439 COG4133 CcmA ABC-type transpor 94.1 0.56 1.2E-05 44.7 10.3 55 271-325 134-190 (209)
440 PRK08972 fliI flagellum-specif 94.1 0.13 2.9E-06 56.6 7.3 86 205-294 161-261 (444)
441 PF06745 KaiC: KaiC; InterPro 94.0 0.07 1.5E-06 54.6 5.0 85 205-294 18-124 (226)
442 PRK10463 hydrogenase nickel in 94.0 0.18 3.9E-06 52.5 7.9 26 204-229 102-127 (290)
443 PRK11823 DNA repair protein Ra 94.0 0.29 6.2E-06 55.3 10.2 82 205-294 79-165 (446)
444 KOG1532 GTPase XAB1, interacts 94.0 0.044 9.6E-07 54.7 3.2 26 204-229 17-42 (366)
445 PRK06793 fliI flagellum-specif 93.9 0.14 3.1E-06 56.6 7.4 87 205-294 155-255 (432)
446 PRK10820 DNA-binding transcrip 93.9 0.13 2.8E-06 59.6 7.4 63 179-247 204-266 (520)
447 PRK05922 type III secretion sy 93.9 0.32 6.8E-06 53.9 9.9 86 205-294 156-256 (434)
448 cd03240 ABC_Rad50 The catalyti 93.9 0.24 5.2E-06 49.6 8.3 61 277-339 131-195 (204)
449 PRK00131 aroK shikimate kinase 93.9 0.042 9.1E-07 53.6 2.8 24 206-229 4-27 (175)
450 cd00984 DnaB_C DnaB helicase C 93.9 0.31 6.8E-06 50.4 9.6 53 205-260 12-64 (242)
451 cd01136 ATPase_flagellum-secre 93.8 0.3 6.5E-06 52.1 9.3 86 205-294 68-168 (326)
452 cd02024 NRK1 Nicotinamide ribo 93.8 0.037 8E-07 54.0 2.4 22 208-229 1-22 (187)
453 TIGR02322 phosphon_PhnN phosph 93.8 0.044 9.6E-07 53.7 3.0 23 207-229 2-24 (179)
454 COG0714 MoxR-like ATPases [Gen 93.8 0.13 2.7E-06 56.0 6.7 62 180-254 25-86 (329)
455 PRK10751 molybdopterin-guanine 93.8 0.061 1.3E-06 51.5 3.6 25 205-229 5-29 (173)
456 cd00227 CPT Chloramphenicol (C 93.8 0.044 9.5E-07 53.5 2.8 23 207-229 3-25 (175)
457 PF13479 AAA_24: AAA domain 93.8 0.16 3.4E-06 51.3 6.9 21 206-226 3-23 (213)
458 COG2019 AdkA Archaeal adenylat 93.7 0.053 1.1E-06 50.2 3.0 24 206-229 4-27 (189)
459 cd02023 UMPK Uridine monophosp 93.7 0.04 8.6E-07 55.1 2.4 22 208-229 1-22 (198)
460 PF00158 Sigma54_activat: Sigm 93.7 0.2 4.3E-06 48.2 7.0 60 181-246 1-60 (168)
461 TIGR02868 CydC thiol reductant 93.7 0.28 6E-06 57.5 9.8 25 205-229 360-384 (529)
462 PRK08149 ATP synthase SpaL; Va 93.7 0.31 6.7E-06 53.9 9.4 86 205-294 150-250 (428)
463 cd03250 ABCC_MRP_domain1 Domai 93.7 0.52 1.1E-05 47.3 10.5 25 205-229 30-54 (204)
464 cd02021 GntK Gluconate kinase 93.7 0.043 9.3E-07 52.0 2.5 22 208-229 1-22 (150)
465 PRK08927 fliI flagellum-specif 93.6 0.29 6.3E-06 54.2 9.0 86 205-294 157-257 (442)
466 COG1936 Predicted nucleotide k 93.6 0.051 1.1E-06 50.9 2.7 20 208-227 2-21 (180)
467 PRK14269 phosphate ABC transpo 93.6 0.58 1.3E-05 48.5 11.0 24 206-229 28-51 (246)
468 PRK09280 F0F1 ATP synthase sub 93.6 0.25 5.5E-06 55.0 8.5 89 205-294 143-247 (463)
469 PRK12678 transcription termina 93.6 0.081 1.8E-06 59.4 4.6 85 205-294 415-512 (672)
470 PRK06731 flhF flagellar biosyn 93.6 0.3 6.6E-06 50.7 8.6 88 206-296 75-165 (270)
471 TIGR03575 selen_PSTK_euk L-ser 93.6 0.7 1.5E-05 49.7 11.5 21 209-229 2-22 (340)
472 PRK13949 shikimate kinase; Pro 93.6 0.051 1.1E-06 52.4 2.8 22 208-229 3-24 (169)
473 COG1131 CcmA ABC-type multidru 93.5 0.63 1.4E-05 49.5 11.2 24 206-229 31-54 (293)
474 PRK09519 recA DNA recombinatio 93.5 0.21 4.5E-06 59.3 8.1 84 205-295 59-148 (790)
475 cd02020 CMPK Cytidine monophos 93.5 0.046 1E-06 51.5 2.4 22 208-229 1-22 (147)
476 cd02028 UMPK_like Uridine mono 93.4 0.05 1.1E-06 53.2 2.5 22 208-229 1-22 (179)
477 cd01132 F1_ATPase_alpha F1 ATP 93.4 0.15 3.2E-06 52.6 6.0 86 205-294 68-170 (274)
478 cd01124 KaiC KaiC is a circadi 93.4 0.12 2.7E-06 50.9 5.4 45 208-256 1-45 (187)
479 TIGR00416 sms DNA repair prote 93.4 0.39 8.5E-06 54.3 9.9 40 205-246 93-132 (454)
480 COG5635 Predicted NTPase (NACH 93.4 0.074 1.6E-06 65.3 4.5 184 205-393 221-427 (824)
481 TIGR01425 SRP54_euk signal rec 93.4 0.27 5.8E-06 54.4 8.3 25 205-229 99-123 (429)
482 PRK11160 cysteine/glutathione 93.4 0.46 9.9E-06 56.2 10.9 25 205-229 365-389 (574)
483 PTZ00185 ATPase alpha subunit; 93.4 0.36 7.8E-06 53.8 9.1 90 205-294 188-298 (574)
484 TIGR03263 guanyl_kin guanylate 93.4 0.058 1.3E-06 52.9 2.9 23 207-229 2-24 (180)
485 PRK13657 cyclic beta-1,2-gluca 93.4 0.49 1.1E-05 56.3 11.2 25 205-229 360-384 (588)
486 PRK13947 shikimate kinase; Pro 93.4 0.055 1.2E-06 52.6 2.7 22 208-229 3-24 (171)
487 TIGR01069 mutS2 MutS2 family p 93.4 0.046 9.9E-07 65.8 2.5 25 205-229 321-345 (771)
488 PRK07594 type III secretion sy 93.4 0.25 5.4E-06 54.7 8.0 86 205-294 154-254 (433)
489 PRK09580 sufC cysteine desulfu 93.3 0.58 1.3E-05 48.6 10.6 24 206-229 27-50 (248)
490 PRK08006 replicative DNA helic 93.3 3.8 8.3E-05 46.6 17.7 55 205-262 223-277 (471)
491 PF03193 DUF258: Protein of un 93.3 0.09 2E-06 49.5 3.9 35 186-229 24-58 (161)
492 PF08477 Miro: Miro-like prote 93.3 0.063 1.4E-06 48.4 2.9 22 209-230 2-23 (119)
493 PRK13545 tagH teichoic acids e 93.3 0.68 1.5E-05 52.5 11.4 24 206-229 50-73 (549)
494 PRK13765 ATP-dependent proteas 93.3 0.13 2.7E-06 60.3 5.9 74 179-262 31-104 (637)
495 PRK12597 F0F1 ATP synthase sub 93.3 0.29 6.2E-06 54.7 8.4 89 205-294 142-246 (461)
496 PF03266 NTPase_1: NTPase; In 93.3 0.059 1.3E-06 51.8 2.7 21 209-229 2-22 (168)
497 TIGR02857 CydD thiol reductant 93.3 0.63 1.4E-05 54.5 11.9 25 205-229 347-371 (529)
498 cd03248 ABCC_TAP TAP, the Tran 93.3 0.75 1.6E-05 47.0 11.0 25 205-229 39-63 (226)
499 COG1224 TIP49 DNA helicase TIP 93.3 0.3 6.6E-06 51.1 7.8 55 178-236 38-95 (450)
500 PF00625 Guanylate_kin: Guanyl 93.2 0.072 1.6E-06 52.4 3.3 37 206-244 2-38 (183)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-83 Score=748.85 Aligned_cols=811 Identities=25% Similarity=0.387 Sum_probs=587.3
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhhh
Q 035647 14 LISAAVEETKERLRLVKGVGKEVKRLSDNFQAIQAVLIDAEQRQVKEAQVRRWLEKLKDASYDMEDVLDECNTSRLKLLI 93 (938)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~~~~~ 93 (938)
.++++..++.+++....+.++.+..|++++..+|++++|+++++.....+..|...+++.+|++||+++.+.......+.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKA 87 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778889999999999999999999999999999999998888889999999999999999999999888765533
Q ss_pred ccCCCCcchhhhHhhccccccccccCCccccCccchhhHHHHHHHHHHHHHHHHHHHHhhcccCcccc---cC--CCcCc
Q 035647 94 EGVDDDDENADRVFQKKKKTVCSFFPAASCFGFKQIFLHRDIALKIKAIDKRLDDIAKQKDMFNLNVV---RN--PEKSE 168 (938)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~---~~--~~~~~ 168 (938)
.+... .+ ....+.. |+| .+++..+..+..+.+++.++.+....++.... .+ ..+..
T Consensus 88 ~~~l~----~~---~~~~~~~--------c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~ 148 (889)
T KOG4658|consen 88 NDLLS----TR---SVERQRL--------CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPRE 148 (889)
T ss_pred hHHhh----hh---HHHHHHH--------hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchh
Confidence 22100 00 0000111 111 33444444544555555555444444443221 11 11111
Q ss_pred cccccccccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc-cccCCCeEEEEEeCCC
Q 035647 169 RMQTTSLINVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC-VINNFDKRMWVCVSDN 247 (938)
Q Consensus 169 ~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~ 247 (938)
..+..+..+..+ +|.+..++++.+.|... +.++++|+||||+||||||++++++.. ++.+|+.++||.||+.
T Consensus 149 ~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~ 221 (889)
T KOG4658|consen 149 KVETRPIQSESD-VGLETMLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE 221 (889)
T ss_pred hcccCCCCcccc-ccHHHHHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc
Confidence 233334444445 99999999999999764 338999999999999999999999987 9999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 248 FDEFRIAKAIIEALEGSAPNLG--ELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 248 ~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
++...++.+|++.++....... ..+++...|.+.|+++|||||+||||+. .+|+.+..++|...+||||++|||+.
T Consensus 222 f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~ 299 (889)
T KOG4658|consen 222 FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSE 299 (889)
T ss_pred ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccH
Confidence 9999999999999987443322 3367888999999999999999999986 56999999999998999999999999
Q ss_pred HHHHh-cccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHHH
Q 035647 326 KVVRM-MESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWESV 404 (938)
Q Consensus 326 ~~~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~~ 404 (938)
.|+.. +++...++++.|+++|||++|.+.+|.... ...+.++++|++++++|+|+|||++++|+.|+.+++.++|+++
T Consensus 300 ~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~ 378 (889)
T KOG4658|consen 300 EVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRA 378 (889)
T ss_pred hhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99998 778889999999999999999999987644 3344599999999999999999999999999999999999999
Q ss_pred Hhhhccc----chhhhchhhhhhhhcccCCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccC-CchHHHHHHH
Q 035647 405 LNSEMWW----FEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKG-NKEMEIIGQE 479 (938)
Q Consensus 405 l~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~-~~~~e~~~~~ 479 (938)
.+...+. ..+..+.++++|.+||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+.+ +.+++++|+.
T Consensus 379 ~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 379 LNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred HccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence 9876544 3344678999999999999999999999999999999999999999999999999844 6889999999
Q ss_pred HHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHHHhhc-----cccEEEEcC-CccccccccccccCceEEEEEEcCC
Q 035647 480 YFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFARYLTK-----NEYLSIEVD-GSEVSQSLINTCQEELRHSILFLGY 553 (938)
Q Consensus 480 ~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~lr~l~l~~~~ 553 (938)
|+++|++++|++..... ++..+|+|||++|++|.++++ .+..++..+ +....+ ....|..+|+++++++.
T Consensus 459 ~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~--~~~~~~~~rr~s~~~~~ 534 (889)
T KOG4658|consen 459 YIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP--QVKSWNSVRRMSLMNNK 534 (889)
T ss_pred HHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc--cccchhheeEEEEeccc
Confidence 99999999999987643 666889999999999999999 565555443 222222 44566889999999998
Q ss_pred CCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC------CCCcchhccCCCcccEEeecCCCCCcccch
Q 035647 554 NASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR------TEELPETCCELCNLQTIEIEECSNLRRLPQ 627 (938)
Q Consensus 554 ~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~------i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 627 (938)
+...+.. .++++|++|.+.++........+.+|..|+.|++|| +..||++|++|.+||+|+++++. +..+|.
T Consensus 535 ~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~ 612 (889)
T KOG4658|consen 535 IEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPS 612 (889)
T ss_pred hhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccch
Confidence 8766654 456689999999873213334456688999999999 56799999999999999999998 999999
Q ss_pred hhhcccCCCeEEeCCcc-ccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhh
Q 035647 628 RIGKLVNLRHLIFVDVY-LDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEA 706 (938)
Q Consensus 628 ~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~ 706 (938)
++++|++|.+|++..+. +..+|..+..|++|++|.++.... ..+...+.++.+|.+|. .+.+..... .
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~----~~~~~~l~el~~Le~L~-~ls~~~~s~------~ 681 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL----SNDKLLLKELENLEHLE-NLSITISSV------L 681 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeecccc----ccchhhHHhhhcccchh-hheeecchh------H
Confidence 99999999999999888 445444455699999998876541 12234444444444443 222211100 0
Q ss_pred hhccCccccccCc----eEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhh-----h
Q 035647 707 KTTNLDKKKNLVH----LELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVV-----L 777 (938)
Q Consensus 707 ~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~-----~ 777 (938)
....+..+.+|.+ +.+..+. .......+..+.+|+.|.+.++.+......|.. .
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~-----------------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~ 744 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCS-----------------KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL 744 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccc-----------------cceeecccccccCcceEEEEcCCCchhhcccccccchhh
Confidence 0011122222221 1111111 112334556667777777777776542112211 1
Q ss_pred -ccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCcccee-eccCccccc
Q 035647 778 -LNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKL-TLRGLYEWE 855 (938)
Q Consensus 778 -l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~~l~ 855 (938)
++++..+.+.+|.....+.+..-.|+|+.|++..|..++.+......... .......|.++..+ .+.+...+.
T Consensus 745 ~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~-----l~~~i~~f~~~~~l~~~~~l~~l~ 819 (889)
T KOG4658|consen 745 CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE-----LKELILPFNKLEGLRMLCSLGGLP 819 (889)
T ss_pred hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh-----cccEEecccccccceeeecCCCCc
Confidence 45566666666665555555556777777777777765554322111100 00012344455555 344444444
Q ss_pred cccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCC
Q 035647 856 EWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 856 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 902 (938)
.+...+- .+++|+.+.+..|++++.+|. +.++.+.+|
T Consensus 820 ~i~~~~l---~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 820 QLYWLPL---SFLKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred eeEeccc---CccchhheehhcCcccccCcc-------ccccceecc
Confidence 4433332 345578888888877777663 344455554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-60 Score=594.84 Aligned_cols=656 Identities=19% Similarity=0.263 Sum_probs=444.0
Q ss_pred ccccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEe---CCCC--
Q 035647 174 SLINVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCV---SDNF-- 248 (938)
Q Consensus 174 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-- 248 (938)
+..+..+++||+++++++..+|... .++.++|+||||||+||||||+++|+. +..+|+..+|+.. ....
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEI 252 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhh
Confidence 3445678999999999999988543 247899999999999999999999986 7788988888742 1100
Q ss_pred ---------C-HHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCE
Q 035647 249 ---------D-EFRIAKAIIEALEGSAP-NLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSK 317 (938)
Q Consensus 249 ---------~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 317 (938)
. ...+..+++..+..... .... ...+++.++++|+||||||||+. .+|+.+.....+.++||+
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~Gsr 326 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSR 326 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcE
Confidence 0 12334444444432211 1111 24567778899999999999753 678887766666678999
Q ss_pred EEEEcCChHHHHhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCC
Q 035647 318 ILVTTRNEKVVRMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRT 397 (938)
Q Consensus 318 iivTtr~~~~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~ 397 (938)
||||||++.++..++...+|+++.++.+|||++|+++||+... .+.++.+++++|+++|+|+|||++++|++|+.+ +
T Consensus 327 IIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~ 403 (1153)
T PLN03210 327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-D 403 (1153)
T ss_pred EEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-C
Confidence 9999999999987777889999999999999999999997643 345688999999999999999999999999875 7
Q ss_pred HHHHHHHHhhhcccchhhhchhhhhhhhcccCCcH-HHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccCCchHHHH
Q 035647 398 REEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPS-MIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEII 476 (938)
Q Consensus 398 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~ 476 (938)
..+|..++++.... .+..|..+|++||+.|++ +.|.||+++|+||.+..++ .+..|++.+.....
T Consensus 404 ~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~-------- 469 (1153)
T PLN03210 404 KEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN-------- 469 (1153)
T ss_pred HHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch--------
Confidence 89999999876532 345699999999999987 6999999999999886553 47778887654322
Q ss_pred HHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHHHhhcccc-------EEEEcCCccccccccccccCceEEEEE
Q 035647 477 GQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFARYLTKNEY-------LSIEVDGSEVSQSLINTCQEELRHSIL 549 (938)
Q Consensus 477 ~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~lr~l~l 549 (938)
.-++.|+++||++... ..+.|||++|+++++++.++. +........... .......+++.+++
T Consensus 470 --~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl-~~~~g~~~v~~i~l 539 (1153)
T PLN03210 470 --IGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL-EDNTGTKKVLGITL 539 (1153)
T ss_pred --hChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH-HhCcccceeeEEEe
Confidence 2288999999998642 247999999999999987653 111110000000 00111234444444
Q ss_pred EcCCCCC---CcccccCCCCceEEEEecCCC----------------------------cchhhhhhhhhccCcccccC-
Q 035647 550 FLGYNAS---LPVCIYNAKKLRSLLIYSSLY----------------------------DLSAVLRYFFDQLTCLRALR- 597 (938)
Q Consensus 550 ~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~----------------------------~~~~~l~~~~~~l~~Lr~L~- 597 (938)
..+.... .+..+..+++|+.|.++.+.. .....+|..| ...+|+.|+
T Consensus 540 ~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 540 DIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred ccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEEC
Confidence 3332221 122334444444444432210 1223334333 234555555
Q ss_pred ----CCCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCcc-ccccCccCCCCCCCCcCCceEecCCCCC
Q 035647 598 ----TEELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVY-LDYMPKGIERLTCLRTLSEFVVSGRGKY 672 (938)
Q Consensus 598 ----i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~~~ 672 (938)
+..+|..+..+++|+.|+|++|..+..+|. ++.+++|++|++++|. +..+|..|+++++|+.|++..+......
T Consensus 619 ~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 445666666777777777777666666664 6677777777777765 6677777777777777776655443322
Q ss_pred CCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccc------cccccccccH--
Q 035647 673 GNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGE------AMNLENEVNH-- 744 (938)
Q Consensus 673 ~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------~~~~~~~~~~-- 744 (938)
|... +++.|. .+.+.++..+.... ....+|+.|+++.|.+...+... .+.+..+...
T Consensus 698 p~~i----~l~sL~----~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 698 PTGI----NLKSLY----RLNLSGCSRLKSFP-------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCcC----CCCCCC----EEeCCCCCCccccc-------cccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence 2211 122222 22233332221111 11245666666666544322110 0000000000
Q ss_pred ----HH-HhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeC
Q 035647 745 ----EA-ISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVG 819 (938)
Q Consensus 745 ----~~-~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~ 819 (938)
.. .+.....+++|+.|+|++|.....+|.++.++++|+.|+|++|..++.+|....+++|+.|++++|..+..+|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 00 0011223578999999999877779999999999999999999988888876689999999999998776554
Q ss_pred cccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEE
Q 035647 820 DEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEI 899 (938)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 899 (938)
. ..++|+.|+|++| .+..+ |..+..+++|+.|++++|+.++.+|..+..+++|+.+++
T Consensus 843 ~------------------~~~nL~~L~Ls~n-~i~~i---P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 843 D------------------ISTNISDLNLSRT-GIEEV---PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred c------------------cccccCEeECCCC-CCccC---hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 2 2457888998886 45554 344678899999999999999999888888899999999
Q ss_pred cCCcchHH
Q 035647 900 YNCPILKE 907 (938)
Q Consensus 900 ~~c~~l~~ 907 (938)
++|++|..
T Consensus 901 ~~C~~L~~ 908 (1153)
T PLN03210 901 SDCGALTE 908 (1153)
T ss_pred CCCccccc
Confidence 99988764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=9.4e-43 Score=373.50 Aligned_cols=278 Identities=37% Similarity=0.620 Sum_probs=225.3
Q ss_pred chHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035647 184 RDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEG 263 (938)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 263 (938)
||.++++|.+.|.... .+.++|+|+|+||+||||||++++++.+.+.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998642 479999999999999999999999987788999999999999999999999999999997
Q ss_pred CCC---CcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHHhccc-CCeEec
Q 035647 264 SAP---NLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMMES-TDVISI 339 (938)
Q Consensus 264 ~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~~-~~~~~l 339 (938)
... ...+.++....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 643 4466777899999999999999999999865 4787787777777779999999999988876654 679999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHHHHhhhcccch---hhh
Q 035647 340 KELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWESVLNSEMWWFE---ELE 416 (938)
Q Consensus 340 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~~l~~~~~~~~---~~~ 416 (938)
++|+.+||++||.+.++... ........+.+++|+++|+|+||||+++|++|+.+.+..+|..+++....... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987655 22334556788999999999999999999999776677899998876544432 234
Q ss_pred chhhhhhhhcccCCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCcccc
Q 035647 417 KYLFAPLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQK 468 (938)
Q Consensus 417 ~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~ 468 (938)
..+..++.+||+.||++.|.||+|||+||+++.|+.+.++++|+++|||..+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6799999999999999999999999999999999999999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=5.4e-25 Score=276.45 Aligned_cols=379 Identities=19% Similarity=0.205 Sum_probs=192.4
Q ss_pred CceEEEEEEcCCCC-CCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCC------CCcchhccCCCcccEE
Q 035647 542 EELRHSILFLGYNA-SLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRT------EELPETCCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i------~~lp~~i~~L~~L~~L 614 (938)
.+++.+++.+|.+. ..|..+.++++|++|++++| .....+|..++++++|++|++ ..+|..++++.+|++|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN--VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccC--cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 44555555555543 24555556666666666555 333445555566666666651 2345555566666666
Q ss_pred eecCCCCCcccchhhhcccCCCeEEeCCcccc-ccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccccc-------
Q 035647 615 EIEECSNLRRLPQRIGKLVNLRHLIFVDVYLD-YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLN------- 686 (938)
Q Consensus 615 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~------- 686 (938)
++++|.....+|..++++++|++|++++|.+. .+|..++++++|++|++..+......+.....+.+|..|.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 66655533345555566666666666655532 4455555555566555554443332222212222222111
Q ss_pred -----------ccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCcc--------ccccccccccHHHH
Q 035647 687 -----------NLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAG--------EAMNLENEVNHEAI 747 (938)
Q Consensus 687 -----------~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~~~~~~~~ 747 (938)
+|. .+.+.+ .......+..+..+++|+.|+++.|.+.+..+. ..+.+..+.....+
T Consensus 298 ~~~p~~~~~l~~L~-~L~l~~----n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 298 GEIPELVIQLQNLE-ILHLFS----NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred cCCChhHcCCCCCc-EEECCC----CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 000 111111 011112223345566677777776666532221 11222222222234
Q ss_pred hhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccC------------
Q 035647 748 SEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRS------------ 814 (938)
Q Consensus 748 ~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~------------ 814 (938)
+..++.+++|+.|++++|.+.+.+|.++..+++|+.|++++|.....+| .+..+++|+.|++++|.-
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 4555566667777777777666667777777777777777776544333 344555555555554431
Q ss_pred ------------ceEeCcccc--------cCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEe
Q 035647 815 ------------VKRVGDEFW--------GIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLE 874 (938)
Q Consensus 815 ------------l~~~~~~~~--------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 874 (938)
...+|..+. -..|...+..+..+..+++|+.|++++|.....+ |..+..+++|+.|+
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~ 529 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI---PDELSSCKKLVSLD 529 (968)
T ss_pred CCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC---ChHHcCccCCCEEE
Confidence 111221100 0012222333444445555666666555332222 22345666666677
Q ss_pred ecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 875 LGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 875 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
|++|.....+|..+.++++|+.|++++|. +.+..+.....+..+..+.+++|.++|
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-----l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQ-----LSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCc-----ccccCChhHhcCcccCEEeccCCccee
Confidence 76665555566666666677777777663 233344455556667777777777765
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=7.2e-25 Score=275.29 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=117.1
Q ss_pred HhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCccccc--
Q 035647 747 ISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWG-- 824 (938)
Q Consensus 747 ~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-- 824 (938)
++..+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|...+.+|....+++|+.|++++|.-...+|..+..
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh
Confidence 445566677777777777777766666666778888888888877666776666788999999988743344433221
Q ss_pred -------CCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEE
Q 035647 825 -------IENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKML 897 (938)
Q Consensus 825 -------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 897 (938)
..|...+..|..+..+++|+.|++++|.....+ |..+..+++|+.|++++|.....+|..+.++++|+.|
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI---PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC---ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 234455667778889999999999998654444 3446789999999999998777899999999999999
Q ss_pred EEcCCcc
Q 035647 898 EIYNCPI 904 (938)
Q Consensus 898 ~l~~c~~ 904 (938)
++++|+.
T Consensus 577 ~ls~N~l 583 (968)
T PLN00113 577 NISHNHL 583 (968)
T ss_pred eccCCcc
Confidence 9999953
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=9.7e-26 Score=238.64 Aligned_cols=316 Identities=20% Similarity=0.185 Sum_probs=241.8
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEee
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEI 616 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L 616 (938)
.++.|+++.+|.+..+-..+..++.||++++..|.. ....+|..+-.|..|..|| +.+.|..+.+-.++-.|+|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L-KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL-KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc-ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 567778887777776677777888888888777642 3345677777888888887 6678888888888888888
Q ss_pred cCCCCCcccchh-hhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEc
Q 035647 617 EECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIR 695 (938)
Q Consensus 617 ~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 695 (938)
++|+ |..+|.. +-+|+-|-+|+|++|.+..+|+.+..|..|++|.+++|... ...+.+|+.++.| .+.
T Consensus 134 S~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~------hfQLrQLPsmtsL----~vL 202 (1255)
T KOG0444|consen 134 SYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN------HFQLRQLPSMTSL----SVL 202 (1255)
T ss_pred ccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh------HHHHhcCccchhh----hhh
Confidence 8887 8888865 56888888888888888889998888899999988776543 2233444444433 222
Q ss_pred CCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchh
Q 035647 696 GLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWV 775 (938)
Q Consensus 696 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~ 775 (938)
.+.+.+......+.++..+.||..++++.|.+. .+|+.+-.+++|+.|+|++|.++. +....
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-----------------~vPecly~l~~LrrLNLS~N~ite-L~~~~ 264 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-----------------IVPECLYKLRNLRRLNLSGNKITE-LNMTE 264 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCC-----------------cchHHHhhhhhhheeccCcCceee-eeccH
Confidence 233333333445677888899999999999876 477888889999999999999988 77777
Q ss_pred hhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccc
Q 035647 776 VLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWE 855 (938)
Q Consensus 776 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 855 (938)
....+|+.|+|+.|.....+..++.++.|+.|++.++. ++ ..++|..++.+.+|+.+...+| .+.
T Consensus 265 ~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~-------------FeGiPSGIGKL~~Levf~aanN-~LE 329 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LT-------------FEGIPSGIGKLIQLEVFHAANN-KLE 329 (1255)
T ss_pred HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cc-------------ccCCccchhhhhhhHHHHhhcc-ccc
Confidence 88899999999999654444479999999999998754 21 2245566788899999998886 344
Q ss_pred cccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchH
Q 035647 856 EWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILK 906 (938)
Q Consensus 856 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 906 (938)
-. |++++.|+.|+.|.+..| .+-.+|+.+.-++.|+.||+..||+|.
T Consensus 330 lV---PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 330 LV---PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cC---chhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCcc
Confidence 33 566889999999999654 788899999999999999999999875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-22 Score=212.31 Aligned_cols=316 Identities=21% Similarity=0.215 Sum_probs=155.1
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcch-hccCCCcccEEe
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPE-TCCELCNLQTIE 615 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~-~i~~L~~L~~L~ 615 (938)
.++..+++..|.+..+|.......+|+.|.|.+| .....-.+.+.-++.||.|| |..+|. ++..-.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N--~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN--LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecc--ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 3455555555555555554445555555555554 22222334455566666666 445553 344556677777
Q ss_pred ecCCCCCcccch-hhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEE
Q 035647 616 IEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLI 693 (938)
Q Consensus 616 L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~ 693 (938)
|++|. |+.+-. .|..+.+|-.|.|+.|.++.+|.. |++|++|+.|++..|...-.. +..+++|..|++++ +.
T Consensus 180 La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive---~ltFqgL~Sl~nlk--lq 253 (873)
T KOG4194|consen 180 LASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE---GLTFQGLPSLQNLK--LQ 253 (873)
T ss_pred ecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh---hhhhcCchhhhhhh--hh
Confidence 77776 665543 366677777777777777777764 556777777777666544321 22233333333221 10
Q ss_pred EcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCc
Q 035647 694 IRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPS 773 (938)
Q Consensus 694 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~ 773 (938)
- +.+.......|..+.++++|+|..|.+.. .-..++-++..|+.|+|++|.+...-++
T Consensus 254 r------N~I~kL~DG~Fy~l~kme~l~L~~N~l~~----------------vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 254 R------NDISKLDDGAFYGLEKMEHLNLETNRLQA----------------VNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred h------cCcccccCcceeeecccceeecccchhhh----------------hhcccccccchhhhhccchhhhheeecc
Confidence 0 11111222334455666666666665542 1122344455555555555555543344
Q ss_pred hhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcc
Q 035647 774 WVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLY 852 (938)
Q Consensus 774 ~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 852 (938)
.+..+++|+.|+|++|......+ .+..|..|++|.|+.+. +.++.+. .+.++.+|++|+|+.|.
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~--------------af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEG--------------AFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhh--------------HHHHhhhhhhhcCcCCe
Confidence 44455555555555554333222 24445555555555433 3333221 12344555555555542
Q ss_pred ccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCc
Q 035647 853 EWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCP 903 (938)
Q Consensus 853 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 903 (938)
.--.+......+..+++|+.|.+.+| +++.+| ..+..+++|++|++.+|+
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 11111111122334555555555544 355544 234445555555555553
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=5.1e-23 Score=218.22 Aligned_cols=336 Identities=17% Similarity=0.185 Sum_probs=253.8
Q ss_pred cccCceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-------CCCcchhccCCCcc
Q 035647 539 TCQEELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-------TEELPETCCELCNL 611 (938)
Q Consensus 539 ~~~~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-------i~~lp~~i~~L~~L 611 (938)
...+.++.+.+....+..+|..++.|.+|+.|.+.+| .+..+...+..|+.||.+. -+.+|..|..|..|
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN---~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN---QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh---hhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 4457788999999999999999999999999999885 3455555677788888876 45789999999999
Q ss_pred cEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCC
Q 035647 612 QTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRG 690 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 690 (938)
.+|||+.|+ +.+.|.++..-+++-.|+|++|++..+|.. +-+|+.|-.|+++.|......| ....+..|+.|.
T Consensus 106 t~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~---- 179 (1255)
T KOG0444|consen 106 TILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLK---- 179 (1255)
T ss_pred eeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhh----
Confidence 999999998 999999999999999999999999999976 6689999999998876654222 122222222221
Q ss_pred eEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC
Q 035647 691 SLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA 770 (938)
Q Consensus 691 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 770 (938)
+++ +.+.-.....+.++.+|+.|.+++.+-+ ...+|.++..+.+|..++++.|.+..
T Consensus 180 ---Ls~----NPL~hfQLrQLPsmtsL~vLhms~TqRT---------------l~N~Ptsld~l~NL~dvDlS~N~Lp~- 236 (1255)
T KOG0444|consen 180 ---LSN----NPLNHFQLRQLPSMTSLSVLHMSNTQRT---------------LDNIPTSLDDLHNLRDVDLSENNLPI- 236 (1255)
T ss_pred ---cCC----ChhhHHHHhcCccchhhhhhhcccccch---------------hhcCCCchhhhhhhhhccccccCCCc-
Confidence 111 1222223344556677777777765543 34567788888999999999999887
Q ss_pred CCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccC
Q 035647 771 LPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRG 850 (938)
Q Consensus 771 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 850 (938)
+|..+..+++|++|+|++|...+.--..+.-.+|+.|+++.++ ++.+|. .++.+++|+.|.+.+
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~---------------avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPD---------------AVCKLTKLTKLYANN 300 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchH---------------HHhhhHHHHHHHhcc
Confidence 8999999999999999999765544445556789999999866 665554 356899999999988
Q ss_pred ccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeecc
Q 035647 851 LYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQING 930 (938)
Q Consensus 851 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~ 930 (938)
|. + .+.-.|++++.+.+|+.+...+| +++-+|++++.|..|+.|.++.|..+ +.++..+.+..+..+++..
T Consensus 301 Nk-L-~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi------TLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 301 NK-L-TFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI------TLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred Cc-c-cccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee------echhhhhhcCCcceeeccC
Confidence 74 2 22334677899999999999876 79999999999999999999998543 2445555555565555554
Q ss_pred c
Q 035647 931 H 931 (938)
Q Consensus 931 ~ 931 (938)
|
T Consensus 372 N 372 (1255)
T KOG0444|consen 372 N 372 (1255)
T ss_pred C
Confidence 4
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=5.5e-22 Score=200.61 Aligned_cols=212 Identities=24% Similarity=0.205 Sum_probs=136.2
Q ss_pred ceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeec
Q 035647 543 ELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIE 617 (938)
Q Consensus 543 ~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~ 617 (938)
.+.++.+++|.+..+|+.+....+|+.|+.++| ....+|+.++.+..|..|+ +.++|..+.++..|..|++.
T Consensus 92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n---~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN---ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred HHHHhhcccchHhhccHHHhhhhhhhhhhcccc---ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcc
Confidence 344455555555555555555555555555553 3344555566666666655 66677777777777777777
Q ss_pred CCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCC
Q 035647 618 ECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGL 697 (938)
Q Consensus 618 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~ 697 (938)
+|+ +..+|+..-.++.|++|+...|-++.+|++++.|.+|..|++..+..... ..+.++..|..+..
T Consensus 169 ~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-----Pef~gcs~L~Elh~------- 235 (565)
T KOG0472|consen 169 GNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL-----PEFPGCSLLKELHV------- 235 (565)
T ss_pred ccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC-----CCCCccHHHHHHHh-------
Confidence 776 66666665557777777777777777777777777777777766655441 12333333332210
Q ss_pred CCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhh
Q 035647 698 GNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVL 777 (938)
Q Consensus 698 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~ 777 (938)
....+.......+..+.++..|++..|++. ..|+.++.+.+|+.|++++|.+++ +|..+++
T Consensus 236 -g~N~i~~lpae~~~~L~~l~vLDLRdNklk-----------------e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn 296 (565)
T KOG0472|consen 236 -GENQIEMLPAEHLKHLNSLLVLDLRDNKLK-----------------EVPDEICLLRSLERLDLSNNDISS-LPYSLGN 296 (565)
T ss_pred -cccHHHhhHHHHhcccccceeeeccccccc-----------------cCchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence 011222223334457778888888888776 356677778889999999999888 8888888
Q ss_pred ccCccEEEEeCCC
Q 035647 778 LNKLKKLYLTHCN 790 (938)
Q Consensus 778 l~~L~~L~L~~~~ 790 (938)
+ +|+.|.+.+|+
T Consensus 297 l-hL~~L~leGNP 308 (565)
T KOG0472|consen 297 L-HLKFLALEGNP 308 (565)
T ss_pred c-eeeehhhcCCc
Confidence 8 88888888874
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=7e-22 Score=199.88 Aligned_cols=246 Identities=24% Similarity=0.247 Sum_probs=148.5
Q ss_pred eEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeecC
Q 035647 544 LRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIEE 618 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~ 618 (938)
+..+.+.+|.+..+.+.+.++..|.+|++..| ....+|..++.+..+..|+ +..+|+.++.+..|..|+.+.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n---~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDN---KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccc---hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 44455555555555555556666666666553 3445555666666555555 555666666666666666666
Q ss_pred CCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCC
Q 035647 619 CSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLG 698 (938)
Q Consensus 619 ~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~ 698 (938)
|. +.++|++++.+-.|..|+..+|++..+|++++++.+|..|.+.++......+. ..+.+.|.++.
T Consensus 124 n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~m~~L~~ld--------- 189 (565)
T KOG0472|consen 124 NE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN----HIAMKRLKHLD--------- 189 (565)
T ss_pred cc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH----HHHHHHHHhcc---------
Confidence 55 55666666666666666666666666666666666555555544443331111 11122222211
Q ss_pred CCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccc----------cHHHHhh-hcCCCCCcceEEEeecCC
Q 035647 699 NVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEV----------NHEAISE-ALQAPPNIESLEMCYYKG 767 (938)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~l~~~~~L~~L~L~~~~~ 767 (938)
-..+.-+..+..++.+.+|+-|++..|.+...+. +.+|+ ..+.++. ....+++|..|+|+.|++
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-----f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-----FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhcccccCCC-----CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 0112223344555566666666666665543221 11111 1223343 445789999999999999
Q ss_pred CCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeecccc
Q 035647 768 KTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMR 813 (938)
Q Consensus 768 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 813 (938)
.. +|+.+.-+.+|.+|++++|.....++.+|++ .|+.|.+.+++
T Consensus 265 ke-~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 265 KE-VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cc-CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 88 9999999999999999999887777799999 89999998865
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=1.5e-20 Score=198.79 Aligned_cols=337 Identities=16% Similarity=0.158 Sum_probs=238.8
Q ss_pred CceEEEEEEcCCCCC-CcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcc-hhccCCCcccEE
Q 035647 542 EELRHSILFLGYNAS-LPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELP-ETCCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp-~~i~~L~~L~~L 614 (938)
...+.+++++|.+.. .+..+.++++|+.+.+.+| .+..+|...+...||+.|+ |.++. +++..++.|++|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N---~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN---ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc---hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 667889999998877 4556789999999999884 6677888777777888887 44443 457778899999
Q ss_pred eecCCCCCcccchh-hhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeE
Q 035647 615 EIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSL 692 (938)
Q Consensus 615 ~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 692 (938)
||+.|. +.++|.. +..-.++++|+|++|.++.+-.+ |.++.+|-+|.+..|............+..|+.|.--+
T Consensus 155 DLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr--- 230 (873)
T KOG4194|consen 155 DLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR--- 230 (873)
T ss_pred hhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc---
Confidence 999988 8887753 66667899999999998877554 88888898998888777654333333333333332111
Q ss_pred EEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCC
Q 035647 693 IIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALP 772 (938)
Q Consensus 693 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp 772 (938)
+.+.......|.++.+|+.|.+..|.+.. .-...|-.+.+++.|+|..|++...-.
T Consensus 231 --------N~irive~ltFqgL~Sl~nlklqrN~I~k----------------L~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 231 --------NRIRIVEGLTFQGLPSLQNLKLQRNDISK----------------LDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred --------cceeeehhhhhcCchhhhhhhhhhcCccc----------------ccCcceeeecccceeecccchhhhhhc
Confidence 11112223446777888888888887763 112346678899999999999887445
Q ss_pred chhhhccCccEEEEeCCCCCCC-CCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCc
Q 035647 773 SWVVLLNKLKKLYLTHCNNCEI-MPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGL 851 (938)
Q Consensus 773 ~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 851 (938)
.|+..+++|+.|+|++|.+... +..+.-.++|+.|+|+++. ++.+++. .+..+..|++|.|+.|
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~--------------sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEG--------------SFRVLSQLEELNLSHN 351 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCChh--------------HHHHHHHhhhhccccc
Confidence 6888999999999999975543 4467788999999999865 6666543 2457889999999998
Q ss_pred cccccccccccccccCCcccEEeecCCccc---cCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceee
Q 035647 852 YEWEEWEIEKEDIAVMPQLISLELGSCSKL---KSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQI 928 (938)
Q Consensus 852 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l---~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i 928 (938)
.+..+. +..+..+.+|+.|++++|..- ++-...+..+++|+.|.+.||. ++......+..+..+..+++
T Consensus 352 -si~~l~--e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-----lk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 352 -SIDHLA--EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-----LKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred -chHHHH--hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-----eeecchhhhccCcccceecC
Confidence 445554 233668999999999998642 3334456679999999999992 22222333444555555666
Q ss_pred cccc
Q 035647 929 NGHN 932 (938)
Q Consensus 929 ~~~~ 932 (938)
.+|-
T Consensus 424 ~~Na 427 (873)
T KOG4194|consen 424 GDNA 427 (873)
T ss_pred CCCc
Confidence 6654
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=1.2e-18 Score=218.60 Aligned_cols=300 Identities=21% Similarity=0.262 Sum_probs=212.7
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC------CCCcchhccCCCcccEEe
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR------TEELPETCCELCNLQTIE 615 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~------i~~lp~~i~~L~~L~~L~ 615 (938)
.++|.+.+..+....+|..+ ...+|+.|++.++ .+..+|..+..+++|++|+ +..+| .++.+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s---~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS---KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCc---cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence 56888998888888888776 5789999999885 4567788889999999998 44566 488899999999
Q ss_pred ecCCCCCcccchhhhcccCCCeEEeCCcc-ccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEE
Q 035647 616 IEECSNLRRLPQRIGKLVNLRHLIFVDVY-LDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLII 694 (938)
Q Consensus 616 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 694 (938)
|++|..+..+|..++++++|++|++++|. +..+|..+ ++++|+.|.+.++......+... .++..| .+
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~---~nL~~L-------~L 732 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNISWL-------DL 732 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc---CCcCee-------ec
Confidence 99999899999999999999999999987 88899877 78999999887765443332211 111111 11
Q ss_pred cCCCCCCChhhhhhccCccccccCceEEEecCCCC---------------CCccccccccccccHHHHhhhcCCCCCcce
Q 035647 695 RGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKD---------------DGAGEAMNLENEVNHEAISEALQAPPNIES 759 (938)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 759 (938)
.+.. +..+ +.. ..+.+|++|.+..+.... ......+.+.++.....+|..+..+++|+.
T Consensus 733 ~~n~-i~~l----P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 733 DETA-IEEF----PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred CCCc-cccc----ccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 1100 0000 000 022333333332211000 000111222222233456778889999999
Q ss_pred EEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCccccc
Q 035647 760 LEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVA 839 (938)
Q Consensus 760 L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 839 (938)
|+|++|...+.+|..+ .+++|+.|+|++|..+..+|.+ +.+|+.|+|.++. ++.+|. .+..
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~---------------si~~ 867 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPW---------------WIEK 867 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChH---------------HHhc
Confidence 9999987666688866 7999999999999888777754 4689999998854 555553 2458
Q ss_pred CCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC
Q 035647 840 FPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP 885 (938)
Q Consensus 840 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 885 (938)
+++|+.|++++|+.+..++. .+..+++|+.|++++|..+..++
T Consensus 868 l~~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCEEECCCCCCcCccCc---ccccccCCCeeecCCCccccccc
Confidence 99999999999999988764 35589999999999999887654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=8.5e-21 Score=211.61 Aligned_cols=352 Identities=21% Similarity=0.223 Sum_probs=201.3
Q ss_pred eEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeecC
Q 035647 544 LRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIEE 618 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~ 618 (938)
+.++++.+|....+|..+..+.+|+.|.++.| .+...|....+|++|++|+ +..+|.++..+.+|++|++++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n---~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRN---YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchh---hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 78888888888888888888888888888874 5667778888888888887 667888888888888888888
Q ss_pred CCCCcccchhhhcccCCCeEEeCCcc-ccccCccCCCCCCCCcCCceEecCCCCCCCCccCccc----------------
Q 035647 619 CSNLRRLPQRIGKLVNLRHLIFVDVY-LDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEG---------------- 681 (938)
Q Consensus 619 ~~~l~~lp~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~---------------- 681 (938)
|. +..+|..+..++.+..+.+++|. +..++... ++.+++..+.....+......+..
T Consensus 124 N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 124 NH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred hc-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence 87 77778777777777777777762 22222211 222222222221111111111111
Q ss_pred cccccccCC------eEEEcCCCCCCChhhh-----hhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhh
Q 035647 682 MRDLNNLRG------SLIIRGLGNVTSIDEA-----KTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEA 750 (938)
Q Consensus 682 L~~L~~L~~------~l~i~~~~~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (938)
+.+|+.+.. .+.+.+. ..+.+... .......-.+|+.++++++.++ .++++
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~-~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-----------------~lp~w 259 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGP-SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-----------------NLPEW 259 (1081)
T ss_pred ccchhhhhhhhcccceEEecCc-chheeeeccCcceeeccccccccceeeecchhhhh-----------------cchHH
Confidence 111110000 0000000 00000000 0000000112333333333322 24455
Q ss_pred cCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCccccc------
Q 035647 751 LQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWG------ 824 (938)
Q Consensus 751 l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~------ 824 (938)
++.+.+|+.+...+|.++. +|..+...++|++|.+..|.....+|.+..+.+|++|+|..+. +..+|+.+..
T Consensus 260 i~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASL 337 (1081)
T ss_pred HHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHH
Confidence 5566666666666666544 5655555666666666666544455566678899999998755 5555543321
Q ss_pred -----------------------------CCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEee
Q 035647 825 -----------------------------IENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLEL 875 (938)
Q Consensus 825 -----------------------------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 875 (938)
.+|+++..+.+.+.++++|+.|+|++| .+..++... +..++.|++|++
T Consensus 338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~--~~kle~LeeL~L 414 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASK--LRKLEELEELNL 414 (1081)
T ss_pred HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHH--HhchHHhHHHhc
Confidence 144555566667778889999999987 566665322 457888888888
Q ss_pred cCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 876 GSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 876 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
++| +|+.+|..+.++..|++|...+|-. . ..| +...++.+..++++.|+|+-
T Consensus 415 SGN-kL~~Lp~tva~~~~L~tL~ahsN~l-----~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 415 SGN-KLTTLPDTVANLGRLHTLRAHSNQL-----L-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ccc-hhhhhhHHHHhhhhhHHHhhcCCce-----e-ech-hhhhcCcceEEecccchhhh
Confidence 887 5777776666666666665555421 1 111 44455555566666666553
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=183.69 Aligned_cols=268 Identities=22% Similarity=0.242 Sum_probs=177.8
Q ss_pred eEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeec
Q 035647 544 LRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIE 617 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~ 617 (938)
+.++.+..|..-..|- .+..+-+|++|++++| .....|..+..+.+|+.|+ +...|.+++++.+|++|+|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn---~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN---QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccc---ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 5556666665554442 2345667999999985 5567788899999999998 88999999999999999999
Q ss_pred CCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCcccc-ccccccCCeE--EE
Q 035647 618 ECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGM-RDLNNLRGSL--II 694 (938)
Q Consensus 618 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~~l--~i 694 (938)
+|. +..+|.++..+++|++|++++|.+..+|.-+..++.+..+...+|......+... ++.+ -+++.+.+.+ .+
T Consensus 100 ~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 100 NNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred cch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchhcch
Confidence 998 9999999999999999999999999999988888888888777662211111111 1110 0111122111 11
Q ss_pred cCCCCCCCh--hhhhhccCccccccCceEEEecCCCCC----CccccccccccccHHHHhhhcCCCCCcceEEEeecCCC
Q 035647 695 RGLGNVTSI--DEAKTTNLDKKKNLVHLELRFNKEKDD----GAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGK 768 (938)
Q Consensus 695 ~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 768 (938)
..+...-.+ .......+..+.+|+.|....|.+..+ ...+.+....+... ....-..+.+|++++++.+++.
T Consensus 177 ~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce--eeccccccccceeeecchhhhh
Confidence 111110000 001123445556666666655554321 11111111111111 1111223568999999999999
Q ss_pred CCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcc
Q 035647 769 TALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDE 821 (938)
Q Consensus 769 ~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 821 (938)
. +|+|+..+.+|+.|...+|.....+..+....+|+.|.+..|. ++++|..
T Consensus 255 ~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~ 305 (1081)
T KOG0618|consen 255 N-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPF 305 (1081)
T ss_pred c-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc
Confidence 8 9999999999999999999875555577788899999998876 8888764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=1.4e-14 Score=168.41 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=17.3
Q ss_pred cccEEeecCCccccCCCcCCCCCCCccEEEEcCCc
Q 035647 869 QLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCP 903 (938)
Q Consensus 869 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 903 (938)
+|+.|++++| .++.+|..+.++++|+.|++++|+
T Consensus 423 ~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 4455555544 244555555555555555555553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=8.4e-14 Score=161.92 Aligned_cols=258 Identities=19% Similarity=0.198 Sum_probs=170.5
Q ss_pred eEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCCCc
Q 035647 544 LRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSNLR 623 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~l~ 623 (938)
-..+++..+.+..+|..+. ++|+.|.+.+|. +. .+|. .+++|++|++++|+ ++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~---Lt------------------~LP~---lp~~Lk~LdLs~N~-Lt 255 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LT------------------SLPA---LPPELRTLEVSGNQ-LT 255 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc---CC------------------CCCC---CCCCCcEEEecCCc-cC
Confidence 3456777777777776654 367777777651 11 1221 13567788888776 77
Q ss_pred ccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCCh
Q 035647 624 RLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSI 703 (938)
Q Consensus 624 ~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~ 703 (938)
.+|.. .++|++|++++|.+..+|... ++|+.|++..|.... +.
T Consensus 256 sLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~--------------LP----------------- 298 (788)
T PRK15387 256 SLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTS--------------LP----------------- 298 (788)
T ss_pred cccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCcccc--------------cc-----------------
Confidence 77753 457777888877777766533 334444443322111 00
Q ss_pred hhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccE
Q 035647 704 DEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKK 783 (938)
Q Consensus 704 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 783 (938)
. ..++|+.|++++|.+.. ++. .+.+|+.|++++|.+.+ +|.. ..+|+.
T Consensus 299 -----~---~p~~L~~LdLS~N~L~~-----------------Lp~---lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~ 346 (788)
T PRK15387 299 -----V---LPPGLQELSVSDNQLAS-----------------LPA---LPSELCKLWAYNNQLTS-LPTL---PSGLQE 346 (788)
T ss_pred -----c---cccccceeECCCCcccc-----------------CCC---CcccccccccccCcccc-cccc---ccccce
Confidence 0 12468889998887763 111 23568889999998887 8862 358999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccc
Q 035647 784 LYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKED 863 (938)
Q Consensus 784 L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 863 (938)
|+|++|... .+|.+ .++|+.|++.+|. +..+|. ..++|+.|++++| .+..++.
T Consensus 347 LdLS~N~Ls-~LP~l--p~~L~~L~Ls~N~-L~~LP~------------------l~~~L~~LdLs~N-~Lt~LP~---- 399 (788)
T PRK15387 347 LSVSDNQLA-SLPTL--PSELYKLWAYNNR-LTSLPA------------------LPSGLKELIVSGN-RLTSLPV---- 399 (788)
T ss_pred EecCCCccC-CCCCC--Ccccceehhhccc-cccCcc------------------cccccceEEecCC-cccCCCC----
Confidence 999998654 45543 4678888887754 444432 2357999999998 4555542
Q ss_pred cccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccCC
Q 035647 864 IAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 864 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~~ 936 (938)
..++|+.|++++| .+..+|.. ..+|+.|++++|. +. ..+..+..+.++..+.+++|.|+|.
T Consensus 400 --l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-----Lt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 400 --LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-----LT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred --cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc-----cc-ccChHHhhccCCCeEECCCCCCCch
Confidence 2468999999998 47888864 3568889999983 22 3566677788899999999999975
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=9e-12 Score=156.24 Aligned_cols=294 Identities=17% Similarity=0.231 Sum_probs=181.0
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAK 255 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~ 255 (938)
.++.++-|+.-.+.+-+ ....+++.|+|++|.||||++.++.+. +..++|+++.. ..+...+..
T Consensus 12 ~~~~~~~R~rl~~~l~~---------~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---------ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred CccccCcchHHHHHHhc---------ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHH
Confidence 34567778765555532 125789999999999999999998853 22689999864 445566667
Q ss_pred HHHHHhcCCCCC-------------cccHHHHHHHHHHhhc--CceeeEEeCCCCCCCcCCchhhhhh-hccCCCCCEEE
Q 035647 256 AIIEALEGSAPN-------------LGELQSLLQHIYASIV--GKRFFLVLDDVWTDDYSKWEPFHNC-LMHGLRGSKIL 319 (938)
Q Consensus 256 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~-l~~~~~gs~ii 319 (938)
.++..+....+. ..+.......+...+. +.+++|||||+..-+......+... +.....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 777777421111 0122233333333333 6799999999965433333333333 33445667899
Q ss_pred EEcCChHHH---HhcccCCeEecC----CCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 320 VTTRNEKVV---RMMESTDVISIK----ELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 320 vTtr~~~~~---~~~~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
||||..... .........+++ +|+.+|+.++|.......- ..+...+|.+.|+|.|+++..++..+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999974211 111112345555 9999999999987643211 13445679999999999999999877
Q ss_pred cCCCC-HHHHHHHHhhhcccchh-hhchhhhhhh-hcccCCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccC
Q 035647 393 RFKRT-REEWESVLNSEMWWFEE-LEKYLFAPLL-LSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKG 469 (938)
Q Consensus 393 ~~~~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~ 469 (938)
..... ..... . .... ....+...+. -.++.||++.+..+...|+++ . +..+.+-.. ..
T Consensus 230 ~~~~~~~~~~~---~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~l------~~--- 290 (903)
T PRK04841 230 RQNNSSLHDSA---R----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVRV------TG--- 290 (903)
T ss_pred hhCCCchhhhh---H----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHHH------cC---
Confidence 54432 11110 0 1111 1122444333 337899999999999999997 2 333222111 11
Q ss_pred CchHHHHHHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHHHhh
Q 035647 470 NKEMEIIGQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFARYLT 518 (938)
Q Consensus 470 ~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~~~~ 518 (938)
.+.+...+++|.+.+++...... .+ .+|+.|++++++.....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 11245679999999997542211 12 35789999999998765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=1.7e-13 Score=160.60 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=21.1
Q ss_pred ceEEEEEEcCCCCCCcccccCCCCceEEEEecC
Q 035647 543 ELRHSILFLGYNASLPVCIYNAKKLRSLLIYSS 575 (938)
Q Consensus 543 ~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~ 575 (938)
+...+.+.++.+..+|..+. ++|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N 209 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNN 209 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCC
Confidence 35567777777777776553 46888888775
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=1.3e-10 Score=130.42 Aligned_cols=318 Identities=14% Similarity=0.078 Sum_probs=184.2
Q ss_pred cccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHH
Q 035647 175 LINVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 175 ~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 254 (938)
...+..++||+++++++...|...-. +.....+.|+|++|+|||++++.++++.......-.++++++....+...++
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 33556899999999999999854321 2234567899999999999999999863322222456777777777888899
Q ss_pred HHHHHHhcCC-CC-CcccHHHHHHHHHHhhc--CceeeEEeCCCCCCC-cCCchhhhhhhc--cCCCCCE--EEEEcCCh
Q 035647 255 KAIIEALEGS-AP-NLGELQSLLQHIYASIV--GKRFFLVLDDVWTDD-YSKWEPFHNCLM--HGLRGSK--ILVTTRNE 325 (938)
Q Consensus 255 ~~i~~~l~~~-~~-~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~--iivTtr~~ 325 (938)
..+++++... .+ ...+.++....+.+.+. +++.+||||+++.-. ....+.+...+. ....+++ +|.++...
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 9999998752 22 22245566667777665 457899999996422 111222222221 2223333 56666654
Q ss_pred HHHHhcc-------cCCeEecCCCChHHHHHHHHHhhcCC--CCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhc---
Q 035647 326 KVVRMME-------STDVISIKELSEQECWWLFKRFAFFG--RPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLR--- 393 (938)
Q Consensus 326 ~~~~~~~-------~~~~~~l~~L~~~ea~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~--- 393 (938)
....... ....+.+.+++.++..+++..++... ....++..+..+++......|..+.|+.++-....
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322211 13468999999999999998876322 11122333344444444445667777776543221
Q ss_pred -C-C--CCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhcCC-CC-CcccchhHHHHH--HHHcCCc
Q 035647 394 -F-K--RTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVF-PK-DYNIEKDELIKL--WMAQGYI 465 (938)
Q Consensus 394 -~-~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~f-p~-~~~i~~~~li~~--w~a~g~i 465 (938)
. . -+.+......+.. -.....-.+..||.+.|..+..++.. .. ...+...++... .+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 1 2345555444322 11223446789999988877665533 21 123455554432 2222110
Q ss_pred cccCCchHHHHHHHHHHHHHhcccCccccc--CCCCCeeeEEec
Q 035647 466 EQKGNKEMEIIGQEYFDCLATRSFFQDFVH--DDEGTVIGCKMH 507 (938)
Q Consensus 466 ~~~~~~~~e~~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~mh 507 (938)
. ... .......|+++|...|+|..... +..|+.+.++.+
T Consensus 334 ~--~~~-~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 334 Y--EPR-THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred C--CcC-cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 0 000 12335669999999999986532 224444445444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-14 Score=129.75 Aligned_cols=150 Identities=22% Similarity=0.243 Sum_probs=119.6
Q ss_pred CCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccC
Q 035647 599 EELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACN 678 (938)
Q Consensus 599 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~ 678 (938)
...|..|..|.+|+.|++.+|+ +.++|..++.+++|++|+++-|.+..+|.+|+.++.|+.|++.++....
T Consensus 46 ~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e-------- 116 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE-------- 116 (264)
T ss_pred eecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc--------
Confidence 4556778888889999999888 9999999999999999999999999999999999999999987765443
Q ss_pred ccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcc
Q 035647 679 LEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIE 758 (938)
Q Consensus 679 l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 758 (938)
+ ..+.++..+..|+.|.++.|.+. .++..++.+++|+
T Consensus 117 -------~-------------------~lpgnff~m~tlralyl~dndfe-----------------~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 117 -------N-------------------SLPGNFFYMTTLRALYLGDNDFE-----------------ILPPDVGKLTNLQ 153 (264)
T ss_pred -------c-------------------cCCcchhHHHHHHHHHhcCCCcc-----------------cCChhhhhhccee
Confidence 1 12345556667777888877664 3566777888899
Q ss_pred eEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCC
Q 035647 759 SLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKL 801 (938)
Q Consensus 759 ~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 801 (938)
.|.+..|.+.+ +|..++.++.|+.|++.+|+..-.+|+++.+
T Consensus 154 il~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 154 ILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred EEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 99999888887 8998999999999999998766666666553
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=4.3e-13 Score=157.24 Aligned_cols=223 Identities=18% Similarity=0.215 Sum_probs=113.2
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEee
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEI 616 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L 616 (938)
..++.+++.+|.+..+|..+. ++|++|++++|. +..+|..+. .+|+.|+ +..+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~---LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ---LTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc---cccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 679999999999998887664 589999999862 334444322 1334333 333443332 24455555
Q ss_pred cCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcC
Q 035647 617 EECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRG 696 (938)
Q Consensus 617 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 696 (938)
++|+ +..+|..+. ++|++|++++|.+..+|..+. .+|+.|++..|....
T Consensus 270 s~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-------------------------- 318 (754)
T PRK15370 270 FHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-------------------------- 318 (754)
T ss_pred cCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc--------------------------
Confidence 4443 444444332 245555555544444443321 133333332221110
Q ss_pred CCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhh
Q 035647 697 LGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVV 776 (938)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~ 776 (938)
+ +..+ ..+|+.|++++|.++. ++..+ +++|+.|++++|.+.. +|..+
T Consensus 319 ------L----P~~l--~~sL~~L~Ls~N~Lt~-----------------LP~~l--~~sL~~L~Ls~N~L~~-LP~~l- 365 (754)
T PRK15370 319 ------L----PETL--PPGLKTLEAGENALTS-----------------LPASL--PPELQVLDVSKNQITV-LPETL- 365 (754)
T ss_pred ------C----Cccc--cccceeccccCCcccc-----------------CChhh--cCcccEEECCCCCCCc-CChhh-
Confidence 0 0000 1356666666665542 12222 2467777777776665 66544
Q ss_pred hccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcc
Q 035647 777 LLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLY 852 (938)
Q Consensus 777 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 852 (938)
.++|+.|+|++|.....++.+ ..+|+.|++++|. +..+|..+... ...++++..|++.+|+
T Consensus 366 -p~~L~~LdLs~N~Lt~LP~~l--~~sL~~LdLs~N~-L~~LP~sl~~~-----------~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 366 -PPTITTLDVSRNALTNLPENL--PAALQIMQASRNN-LVRLPESLPHF-----------RGEGPQPTRIIVEYNP 426 (754)
T ss_pred -cCCcCEEECCCCcCCCCCHhH--HHHHHHHhhccCC-cccCchhHHHH-----------hhcCCCccEEEeeCCC
Confidence 356777777776544333232 2356666666654 44444322111 1234666666666653
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=4.5e-13 Score=136.60 Aligned_cols=364 Identities=18% Similarity=0.151 Sum_probs=207.1
Q ss_pred cCceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC------CCCcch-hccCCCccc
Q 035647 541 QEELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR------TEELPE-TCCELCNLQ 612 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~------i~~lp~-~i~~L~~L~ 612 (938)
......+.+-.|.+..+|+ +|..+++||.|+|++| .....-|..|..+..|..|- |+.+|+ .|.+|..|+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N--~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN--NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceeccccc--chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3778899999999999875 6889999999999998 66667789999988887764 888996 488999999
Q ss_pred EEeecCCCCCcccch-hhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCcccccccc----
Q 035647 613 TIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLN---- 686 (938)
Q Consensus 613 ~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~---- 686 (938)
.|.+..|. +..++. .+..|++|..|.+.+|.+..++. .+..+.+++++.+..+.... .++++.+..-.
T Consensus 144 rLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 144 RLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLAMNP 217 (498)
T ss_pred HHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHhhch
Confidence 99999998 776654 58999999999999999999988 58889999999876665322 22222221100
Q ss_pred -ccCC---------------eEEE----cCCCCC-------CChh-hhhhccCccccccCceEEEecCCCCCCcc-----
Q 035647 687 -NLRG---------------SLII----RGLGNV-------TSID-EAKTTNLDKKKNLVHLELRFNKEKDDGAG----- 733 (938)
Q Consensus 687 -~L~~---------------~l~i----~~~~~~-------~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----- 733 (938)
.+.+ .+.- ..++.+ .... ......+..+++|++|++++|.++..-..
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 0000 0000 000000 0000 00112267889999999999988742111
Q ss_pred ---ccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCC-CC----------------
Q 035647 734 ---EAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNN-CE---------------- 793 (938)
Q Consensus 734 ---~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~-~~---------------- 793 (938)
+.+.+........-...|..+.+|+.|+|.+|+++..-|..+..+.+|..|.|-.|+. +.
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~ 377 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVV 377 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCC
Confidence 1111111111111122455566666677776666664455555666666666655431 10
Q ss_pred CCCCCCCCCCccceeeccccCceEeCcccccCCCCC--CCCCCcccccCCccceeeccCccccccccccccccccCCccc
Q 035647 794 IMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHH--SSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLI 871 (938)
Q Consensus 794 ~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~ 871 (938)
..|.-+....++.+.++.... + .+.+..+.. ....+.....++.+.+..=..+..++.++.. --..-.
T Consensus 378 ~~~~Cq~p~~~~~~~~~dv~~----~-~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-----iP~d~t 447 (498)
T KOG4237|consen 378 GNPRCQSPGFVRQIPISDVAF----G-DFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-----IPVDVT 447 (498)
T ss_pred CCCCCCCCchhccccchhccc----c-ccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-----CCchhH
Confidence 011112233344444443210 0 000000000 1112222334555555544444445544321 112345
Q ss_pred EEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccc
Q 035647 872 SLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGH 931 (938)
Q Consensus 872 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~ 931 (938)
.|++.+| .++.+|.. .+.+| .+++++|+-.. -..-.+..++++..+.++.|
T Consensus 448 elyl~gn-~~~~vp~~--~~~~l-~~dls~n~i~~-----Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 448 ELYLDGN-AITSVPDE--LLRSL-LLDLSNNRISS-----LSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHhcccc-hhcccCHH--HHhhh-hcccccCceeh-----hhcccccchhhhheeEEecC
Confidence 6677666 46667755 45667 77888775321 12223456666666655543
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=1.8e-12 Score=154.56 Aligned_cols=310 Identities=22% Similarity=0.219 Sum_probs=195.1
Q ss_pred CceEEEEEEcCC--CCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccE
Q 035647 542 EELRHSILFLGY--NASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQT 613 (938)
Q Consensus 542 ~~lr~l~l~~~~--~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~ 613 (938)
.+++.+-+..+. ...++. .+..++.||+|+|++| .....+|..+++|-+||||+ +..+|.++.+|..|++
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~--~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN--SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC--CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 368888888875 344444 3678999999999997 67889999999999999999 8899999999999999
Q ss_pred EeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEE
Q 035647 614 IEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLI 693 (938)
Q Consensus 614 L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~ 693 (938)
|++..+..+..+|..+..|++||+|.+.......-...++.+.+|++|....+...+. .....+.....|..+...+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 9999998777787777889999999987654222122355556666665554433321 00112222333332221222
Q ss_pred EcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcC-CCCCcceEEEeecCCCCCCC
Q 035647 694 IRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQ-APPNIESLEMCYYKGKTALP 772 (938)
Q Consensus 694 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~lp 772 (938)
+.+ .........+..+.+|+.|.+..+........... . .... .++++..+.+.++.... .+
T Consensus 701 ~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~------~-----~~~~~~f~~l~~~~~~~~~~~r-~l 763 (889)
T KOG4658|consen 701 IEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE------S-----LIVLLCFPNLSKVSILNCHMLR-DL 763 (889)
T ss_pred hcc-----cccceeecccccccCcceEEEEcCCCchhhccccc------c-----cchhhhHHHHHHHHhhcccccc-cc
Confidence 211 11123345677889999999998887531110000 0 0000 13456666666776666 77
Q ss_pred chhhhccCccEEEEeCCCCCCC-CCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCc
Q 035647 773 SWVVLLNKLKKLYLTHCNNCEI-MPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGL 851 (938)
Q Consensus 773 ~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 851 (938)
.|....++|+.|.+..|...+. +|....+..++.+.+..+. +..++ ...+.++||++..+.+..-
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~-------------~~~~l~~l~~i~~~~l~~~ 829 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR-------------MLCSLGGLPQLYWLPLSFL 829 (889)
T ss_pred chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce-------------eeecCCCCceeEecccCcc
Confidence 8888899999999999986554 4444445555543332211 11111 0111345666666666553
Q ss_pred cccccccccc-cccccCCcccEEeecCC-ccccCCCcC
Q 035647 852 YEWEEWEIEK-EDIAVMPQLISLELGSC-SKLKSLPVD 887 (938)
Q Consensus 852 ~~l~~~~~~~-~~~~~l~~L~~L~l~~c-~~l~~lp~~ 887 (938)
. +.+|.+.. +....+|.+..+.+.+| ..+...|..
T Consensus 830 ~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 830 K-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred c-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 2 55544322 12357899999999997 677777764
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=5.2e-14 Score=126.63 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=133.4
Q ss_pred hccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccc
Q 035647 604 TCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMR 683 (938)
Q Consensus 604 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~ 683 (938)
.+.++.+.+.|.|+.|+ ++.+|+.|..|.+|+.|++.+|.++.+|..|+.|++|+.|.+..+..
T Consensus 28 gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--------------- 91 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--------------- 91 (264)
T ss_pred cccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh---------------
Confidence 34566778889999998 99999999999999999999999999999999999999997543221
Q ss_pred cccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEe
Q 035647 684 DLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMC 763 (938)
Q Consensus 684 ~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 763 (938)
+ ..+..+++++.|+.|++++|.+.. ..++..|-.+..|+.|+|+
T Consensus 92 --~-------------------~lprgfgs~p~levldltynnl~e---------------~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 92 --N-------------------ILPRGFGSFPALEVLDLTYNNLNE---------------NSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred --h-------------------cCccccCCCchhhhhhcccccccc---------------ccCCcchhHHHHHHHHHhc
Confidence 1 113456778889999999998763 2344445556778889999
Q ss_pred ecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCccc
Q 035647 764 YYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEF 822 (938)
Q Consensus 764 ~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 822 (938)
.|.+.- +|..++.+++|+.|.+.+|..++.+.+++.+..|++|++.++. ++-+|.++
T Consensus 136 dndfe~-lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppel 192 (264)
T KOG0617|consen 136 DNDFEI-LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPEL 192 (264)
T ss_pred CCCccc-CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecChhh
Confidence 998877 9999999999999999999877777789999999999998876 66666543
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.26 E-value=1.7e-09 Score=120.06 Aligned_cols=302 Identities=13% Similarity=0.104 Sum_probs=174.9
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc-cCC---CeEEEEEeCCCCCHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI-NNF---DKRMWVCVSDNFDEFR 252 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~ 252 (938)
.+..++||++++++|...|...-. +.....+.|+|++|+|||++++.++++.... ... -.++|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864221 2245679999999999999999999852211 111 2467888887777888
Q ss_pred HHHHHHHHhc---CCCCC-cccHHHHHHHHHHhhc--CceeeEEeCCCCCCCcCCchhhhhhhcc-----CC--CCCEEE
Q 035647 253 IAKAIIEALE---GSAPN-LGELQSLLQHIYASIV--GKRFFLVLDDVWTDDYSKWEPFHNCLMH-----GL--RGSKIL 319 (938)
Q Consensus 253 ~~~~i~~~l~---~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~-----~~--~gs~ii 319 (938)
++..+++++. ...+. ..+..+....+.+.+. +++++||||+++.-. .....+...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cCCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999984 22221 1234455556666653 568899999996531 111222222211 11 223455
Q ss_pred EEcCChHHHHhcc-----c--CCeEecCCCChHHHHHHHHHhhcC-CCCCCCchhHHHHHHHHHhhcCCchhHH-HHHHh
Q 035647 320 VTTRNEKVVRMME-----S--TDVISIKELSEQECWWLFKRFAFF-GRPPSECEQLVEIGQKIVGNCKGLPLAA-KTIGS 390 (938)
Q Consensus 320 vTtr~~~~~~~~~-----~--~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~PLai-~~~a~ 390 (938)
++|........+. . ...+.+.+.+.+|..+++..++.. .......++..+...+++....|.|-.+ .++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554433221111 1 246899999999999999888641 1111223344445556777777888543 32222
Q ss_pred hh----cC---CCCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhcCCC--CCcccchhHHHHHHHH
Q 035647 391 LL----RF---KRTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFP--KDYNIEKDELIKLWMA 461 (938)
Q Consensus 391 ~l----~~---~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i~~~~li~~w~a 461 (938)
.. .. .-+.+......+... .....-+...||.+.|..+..++..- ++..+...++...+..
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 11 123444444333220 12233456789998887666655221 3334566666663321
Q ss_pred --cCCccccCCchHHHHHHHHHHHHHhcccCcccc
Q 035647 462 --QGYIEQKGNKEMEIIGQEYFDCLATRSFFQDFV 494 (938)
Q Consensus 462 --~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (938)
+. +.. ..........++..|...|++....
T Consensus 320 ~~~~-~~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCED-IGV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHh-cCC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 21 110 1122456778899999999998754
No 26
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.20 E-value=2e-09 Score=121.68 Aligned_cols=298 Identities=20% Similarity=0.252 Sum_probs=192.7
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKA 256 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 256 (938)
+...+-|..-++.+.. ....|.+.|..++|.|||||+.+.+.. ...-..+.|.+..+ +.+...+.+.
T Consensus 18 ~~~~v~R~rL~~~L~~---------~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPRLLDRLRR---------ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHHHHHHHhc---------CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHH
Confidence 4556667665555543 237899999999999999999998752 22335689999865 4456677777
Q ss_pred HHHHhcCCCCCc-------------ccHHHHHHHHHHhhc--CceeeEEeCCCCCCCcCCchh-hhhhhccCCCCCEEEE
Q 035647 257 IIEALEGSAPNL-------------GELQSLLQHIYASIV--GKRFFLVLDDVWTDDYSKWEP-FHNCLMHGLRGSKILV 320 (938)
Q Consensus 257 i~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iiv 320 (938)
++..+..-.++. .+...+...+...+. .++..+||||..-........ +...+.....+-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 888777433322 233334555555444 568999999985433333333 4444556778899999
Q ss_pred EcCChHHHHh---cccCCeEecC----CCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhc
Q 035647 321 TTRNEKVVRM---MESTDVISIK----ELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLR 393 (938)
Q Consensus 321 Ttr~~~~~~~---~~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~ 393 (938)
|||+..-... --....++++ .|+.+|+-++|...... +-+ ...++.+.+...|=+-|+..++-.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l---~Ld----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL---PLD----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC---CCC----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9998643221 1113344444 68999999999876421 112 34456699999999999999999998
Q ss_pred CCCCHHHHHHHHhhhcccchhhhchhhh-hhhhcccCCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccCCch
Q 035647 394 FKRTREEWESVLNSEMWWFEELEKYLFA-PLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKE 472 (938)
Q Consensus 394 ~~~~~~~w~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 472 (938)
.+.+.+.-...+.-. .+.+.. ...=-++.||+++|..++-+|+++.= -+.|+..-.+
T Consensus 239 ~~~~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg----------- 296 (894)
T COG2909 239 NNTSAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG----------- 296 (894)
T ss_pred CCCcHHHHhhhccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc-----------
Confidence 554444333322210 001111 11223678999999999999999641 2233333221
Q ss_pred HHHHHHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHHHhhcc
Q 035647 473 MEIIGQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFARYLTKN 520 (938)
Q Consensus 473 ~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~~~~~~ 520 (938)
++-+...+++|..++++-..-.+ .-.+|+.|.++.+|.+.-...
T Consensus 297 -~~ng~amLe~L~~~gLFl~~Ldd---~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 -EENGQAMLEELERRGLFLQRLDD---EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -CCcHHHHHHHHHhCCCceeeecC---CCceeehhHHHHHHHHhhhcc
Confidence 23356779999999999643321 226799999999998876554
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=1.3e-09 Score=115.54 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=115.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh---
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYAS--- 281 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--- 281 (938)
..+++.|+|++|+||||+++.+++.... ..+ .+.|+ +....+..+++..++..++..... .+.......+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 3458999999999999999999986331 111 22233 333456778888899888765332 2222233333322
Q ss_pred --hcCceeeEEeCCCCCCCcCCchhhhhhhcc---CCCCCEEEEEcCChHHHHhcc----------cCCeEecCCCChHH
Q 035647 282 --IVGKRFFLVLDDVWTDDYSKWEPFHNCLMH---GLRGSKILVTTRNEKVVRMME----------STDVISIKELSEQE 346 (938)
Q Consensus 282 --l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~~~~~~~----------~~~~~~l~~L~~~e 346 (938)
..+++.++|+||++.-+...++.+...... ......|++|.... ....+. ....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 257789999999977554455555432211 11223456665532 221111 13467899999999
Q ss_pred HHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 347 CWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 347 a~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
..+++...+...+......-..+..+.|++.++|.|..|+.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764332111112235677889999999999999998887
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=4.7e-11 Score=123.93 Aligned_cols=195 Identities=20% Similarity=0.164 Sum_probs=101.6
Q ss_pred cccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH---
Q 035647 181 VRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI--- 257 (938)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 257 (938)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+... ..-..++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~~~~y~~~~~~~~~~-~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK--EKGYKVVYIDFLEESNES-SLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCCcEEEEecccchhhh-HHHHHHHH
Confidence 799999999999998542 356899999999999999999998631 111134455444433222 22222
Q ss_pred -------HHHhc----CCCC------CcccHHHHHHHHHHhhc--CceeeEEeCCCCCCC--cCCchh----hhhhhcc-
Q 035647 258 -------IEALE----GSAP------NLGELQSLLQHIYASIV--GKRFFLVLDDVWTDD--YSKWEP----FHNCLMH- 311 (938)
Q Consensus 258 -------~~~l~----~~~~------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~--~~~~~~----l~~~l~~- 311 (938)
.+.+. .... ...........+.+.+. +++.+||+||+..-. ...... +...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11122 1110 11222233344444443 345999999995432 011122 3333333
Q ss_pred -CCCCCEEEEEcCChHHHHh--------cccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 312 -GLRGSKILVTTRNEKVVRM--------MESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 312 -~~~gs~iivTtr~~~~~~~--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
......+|+++........ .+....+.+++|+.+++++++...+-.. . .. +.-.+..++|...+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCH
Confidence 1233344455544444332 1234469999999999999999875333 1 11 123445588999999999
Q ss_pred hHHHH
Q 035647 383 LAAKT 387 (938)
Q Consensus 383 Lai~~ 387 (938)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.07 E-value=4.9e-12 Score=129.15 Aligned_cols=281 Identities=15% Similarity=0.165 Sum_probs=168.6
Q ss_pred CCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEeecCCCCCcccc
Q 035647 553 YNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIEIEECSNLRRLP 626 (938)
Q Consensus 553 ~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp 626 (938)
.+.++|..+. +.-..+.|..| ......|.+|+.+++||.|| |+.+ |..|.+|..|..|-+.+++.|+++|
T Consensus 57 GL~eVP~~LP--~~tveirLdqN--~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQN--QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCcccCC--CcceEEEeccC--CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 4445665443 24556677775 44445567899999999999 4444 6789999999999888866699999
Q ss_pred hh-hhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCe-EEEcCCCCCCCh
Q 035647 627 QR-IGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGS-LIIRGLGNVTSI 703 (938)
Q Consensus 627 ~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~-l~i~~~~~~~~~ 703 (938)
.. |+.|..|+.|.+.-|.+..++.. +..|++|..|.++.+............+..++.+..-++. .....+......
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 76 88999999999999988887765 7889999999888877655433333333333333211111 011111111111
Q ss_pred hhhhhccCccccccCceEEEecCCCCCCcccccc---------cccc-ccHHHHhhhcCCCCCcceEEEeecCCCCCCCc
Q 035647 704 DEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMN---------LENE-VNHEAISEALQAPPNIESLEMCYYKGKTALPS 773 (938)
Q Consensus 704 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~ 773 (938)
....+..++.........+.+..+....+..+.. ...+ .........|..+++|++|+|++|.++..-+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 1111111222222211111111111100000000 0001 01111223477789999999999999986677
Q ss_pred hhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcc
Q 035647 774 WVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLY 852 (938)
Q Consensus 774 ~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 852 (938)
|+....+++.|.|..|+....-. .+.++..|+.|+|.+++ ++.+.... +..+.+|.+|.+-.|+
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~a--------------F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGA--------------FQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe-eEEEeccc--------------ccccceeeeeehccCc
Confidence 88899999999999996433222 47788999999999876 55553322 3456677777776654
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=2.3e-11 Score=132.89 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=44.0
Q ss_pred cCCccceeeccCccccccccccc--cc-cccCCcccEEeecCCccc----cCCCcCCCCCCCccEEEEcCCcchHHhhcc
Q 035647 839 AFPKLKKLTLRGLYEWEEWEIEK--ED-IAVMPQLISLELGSCSKL----KSLPVDLLRSQKLKMLEIYNCPILKERFKK 911 (938)
Q Consensus 839 ~l~~L~~L~l~~~~~l~~~~~~~--~~-~~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~ 911 (938)
.+++|++|++++|. +.+..... .. ....+.|++|++++|... ..++..+..+++|+.+++++|.--.+.+.
T Consensus 219 ~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~- 296 (319)
T cd00116 219 SLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ- 296 (319)
T ss_pred ccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH-
Confidence 45667777776653 23211100 00 002367777777777422 12333344456777777777744322211
Q ss_pred CCCCCcccc-cCcCceeecccc
Q 035647 912 DVGEDWAKI-FHIPNIQINGHN 932 (938)
Q Consensus 912 ~~~~~~~~i-~~i~~i~i~~~~ 932 (938)
...+.+... +++..++|.+|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCC
Confidence 112222222 456666666654
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=2.6e-09 Score=115.91 Aligned_cols=279 Identities=18% Similarity=0.142 Sum_probs=149.2
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
-.+|+|++..++.+...+..... .....+.+.|+|++|+|||++|+.+++... ..+ .++.... ......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEeccc-ccChHHHHHH
Confidence 35799999999999888764321 123456789999999999999999998632 221 1222211 1111222233
Q ss_pred HHHhcCCCC-CcccHH----HHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHHhcc
Q 035647 258 IEALEGSAP-NLGELQ----SLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMME 332 (938)
Q Consensus 258 ~~~l~~~~~-~~~~~~----~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~ 332 (938)
+..+....- -.++++ ...+.+...+.+.+..+|+|+.... .. +...++ +.+-|..|++...+...+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~--~~---~~~~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAA--RS---IRLDLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccc--cc---eeecCC---CceEEeecCCcccCCHHHH
Confidence 333221100 000000 1122233334444445555544211 11 010111 2344556666443333221
Q ss_pred --cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHHHHhhhcc
Q 035647 333 --STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWESVLNSEMW 410 (938)
Q Consensus 333 --~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~~l~~~~~ 410 (938)
....+.+++++.++..+++.+.+...+... ..+.+..|++.|+|.|-.+..+...+. .|........-
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~I 238 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGVI 238 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCCC
Confidence 135789999999999999998875543322 235567899999999965544444321 12111110000
Q ss_pred cchhhhchhhhhhhhcccCCcHHHHHHHh-hhcCCCCCcccchhHHHHHHHHcCCccccCCchHHHHHHHHHH-HHHhcc
Q 035647 411 WFEELEKYLFAPLLLSYNDLPSMIKQCFL-YCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEIIGQEYFD-CLATRS 488 (938)
Q Consensus 411 ~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~-~L~~~s 488 (938)
....-......+...+..|++..+..+. ....|+.+ .+..+.+.... | .+ .+.+++.++ .|++.+
T Consensus 239 -~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~~----~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 239 -TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----EE----RDTIEDVYEPYLIQQG 305 (328)
T ss_pred -CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----CC----cchHHHHhhHHHHHcC
Confidence 0111122345567788899998888886 67777655 45555543332 1 11 123444566 899999
Q ss_pred cCcccc
Q 035647 489 FFQDFV 494 (938)
Q Consensus 489 ll~~~~ 494 (938)
|++...
T Consensus 306 li~~~~ 311 (328)
T PRK00080 306 FIQRTP 311 (328)
T ss_pred CcccCC
Confidence 997543
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=8.5e-09 Score=111.31 Aligned_cols=276 Identities=16% Similarity=0.100 Sum_probs=146.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+|+|++..++.+..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCchh-HHHHH
Confidence 4699999999999998864322 12345668899999999999999999862 2222 1222111111111 22222
Q ss_pred HHhcCCCC-CcccH----HHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHHhcc-
Q 035647 259 EALEGSAP-NLGEL----QSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMME- 332 (938)
Q Consensus 259 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~- 332 (938)
..+..... -.+++ ....+.+...+.+.+..+|+|+.... ..+. ..++ +.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---LDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---ecCC---CeEEEEecCCccccCHHHHh
Confidence 22221100 00000 01223344444455555666654221 1111 1111 2445556666543333221
Q ss_pred -cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHHHHhhhccc
Q 035647 333 -STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWESVLNSEMWW 411 (938)
Q Consensus 333 -~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~~l~~~~~~ 411 (938)
....+.+++++.+|..+++.+.+...+... ..+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 134689999999999999998875433222 23455679999999997665554432 11100000000
Q ss_pred c-hhhhchhhhhhhhcccCCcHHHHHHHh-hhcCCCCCcccchhHHHHHHHHcCCccccCCchHHHHHHHHHH-HHHhcc
Q 035647 412 F-EELEKYLFAPLLLSYNDLPSMIKQCFL-YCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEIIGQEYFD-CLATRS 488 (938)
Q Consensus 412 ~-~~~~~~i~~~l~~sy~~L~~~~k~~f~-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~-~L~~~s 488 (938)
. .+.-......+...|..++++.+..+. .++.++.+ .+..+.+.... |- ....+...++ .|++.+
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcC
Confidence 0 011111223356778899998888776 55667533 34443333222 11 1123555677 699999
Q ss_pred cCccc
Q 035647 489 FFQDF 493 (938)
Q Consensus 489 ll~~~ 493 (938)
|++..
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99744
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=1.9e-11 Score=133.49 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=36.0
Q ss_pred chhccCCCcccEEeecCCCCC-----cccchhhhcccCCCeEEeCCccccc-------cCccCCCCCCCCcCCceEec
Q 035647 602 PETCCELCNLQTIEIEECSNL-----RRLPQRIGKLVNLRHLIFVDVYLDY-------MPKGIERLTCLRTLSEFVVS 667 (938)
Q Consensus 602 p~~i~~L~~L~~L~L~~~~~l-----~~lp~~i~~L~~L~~L~l~~~~l~~-------lp~~i~~L~~L~~L~~~~~~ 667 (938)
+..+..+.+|+.|++++|. + ..++..+...++|++|+++++.+.. ++..+.++++|+.|++..+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3344455667777777776 4 2244455566667777776665432 22234455566666554443
No 34
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.6e-09 Score=104.07 Aligned_cols=144 Identities=19% Similarity=0.307 Sum_probs=89.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccC----CCeEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINN----FDKRMWVCVSDNFDEF---RIAKAIIEALEGSAPNLGELQSLLQHIY 279 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 279 (938)
|++.|+|.+|+||||++++++.+-..... +..++|+...+..... .+...+........ .........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 57999999999999999999876322222 4566777766544432 33334444333221 11111111111
Q ss_pred HhhcCceeeEEeCCCCCCCc--C-----Cchhhh-hhhcc-CCCCCEEEEEcCChHH---HHhcccCCeEecCCCChHHH
Q 035647 280 ASIVGKRFFLVLDDVWTDDY--S-----KWEPFH-NCLMH-GLRGSKILVTTRNEKV---VRMMESTDVISIKELSEQEC 347 (938)
Q Consensus 280 ~~l~~~~~LlVlDdv~~~~~--~-----~~~~l~-~~l~~-~~~gs~iivTtr~~~~---~~~~~~~~~~~l~~L~~~ea 347 (938)
.+.++++||+|+++.-.. . .+..+. ..+.. ..++.+++||+|.... .........+++.+|++++.
T Consensus 78 --~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 --EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred --HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 247899999999954221 1 122323 22333 2568999999998765 33334456899999999999
Q ss_pred HHHHHHhh
Q 035647 348 WWLFKRFA 355 (938)
Q Consensus 348 ~~lf~~~~ 355 (938)
.++++++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998764
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.96 E-value=9.1e-08 Score=109.24 Aligned_cols=304 Identities=13% Similarity=0.079 Sum_probs=167.3
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc---ccCCC--eEEEEEeCCCCCHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV---INNFD--KRMWVCVSDNFDEF 251 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~ 251 (938)
.|..+.|||+|+++|...|...-. +.....++.|+|.+|+|||+.++.|.+.... ..... .+++|++....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 346789999999999998865321 1223467889999999999999999875221 11222 36778877777888
Q ss_pred HHHHHHHHHhcCCCCC-cccHHHHHHHHHHhhc---CceeeEEeCCCCCCCcCCchhhhhhhcc-CCCCCEEEE--EcCC
Q 035647 252 RIAKAIIEALEGSAPN-LGELQSLLQHIYASIV---GKRFFLVLDDVWTDDYSKWEPFHNCLMH-GLRGSKILV--TTRN 324 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~ 324 (938)
.++..|.+++....+. .....+....+...+. ....+||||++..-....-+.|...+.+ ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 8999999998544332 2233345555555542 2345999999953221111223333322 234556555 3332
Q ss_pred hHHH----Hhcc---cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCC-
Q 035647 325 EKVV----RMME---STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKR- 396 (938)
Q Consensus 325 ~~~~----~~~~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~- 396 (938)
.... ..+. ....+...|.+.++-.+++..++.......++..++-+|+.++..-|-.-.||.++-.+.....
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1111 1111 1234677999999999999998864322234455555556555555556667766655553221
Q ss_pred ---CHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhcCCCC---CcccchhHHHHHH--HHc--C-Cc
Q 035647 397 ---TREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFPK---DYNIEKDELIKLW--MAQ--G-YI 465 (938)
Q Consensus 397 ---~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~---~~~i~~~~li~~w--~a~--g-~i 465 (938)
..++-..+.... ....+.-....||.+.|..+..+...-+ ...++...+.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 122222222111 1111233446788887766553332211 1134444333322 112 1 11
Q ss_pred cccCCchHHHHHHHHHHHHHhcccCcccc
Q 035647 466 EQKGNKEMEIIGQEYFDCLATRSFFQDFV 494 (938)
Q Consensus 466 ~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (938)
. .... .+ ....++.+|...|+|...+
T Consensus 1062 G-v~pl-Tq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1062 G-MCSN-NE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred C-CCCc-HH-HHHHHHHHHHhcCeEEecC
Confidence 1 1111 12 5667778888888776543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=5.9e-11 Score=126.92 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=146.8
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEee
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEI 616 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L 616 (938)
......+++.|.+..+|..++.+..|..|.|+.| ....+|..++++..|.||+ +..+|..++.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n---~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHN---CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhc---cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 3455677888888889999999999999999885 5577899999999999998 778999998887 999999
Q ss_pred cCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcC
Q 035647 617 EECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRG 696 (938)
Q Consensus 617 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 696 (938)
++|+ ++.+|.+++.+..|.+|+.+.|.+..+|..++.|.+|+.|.+..+....
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-------------------------- 203 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-------------------------- 203 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--------------------------
Confidence 9988 9999999999999999999999999999999999988888655433221
Q ss_pred CCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhh
Q 035647 697 LGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVV 776 (938)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~ 776 (938)
.+..+.. -.|..|++++|.+. .+|-.|+.+..|++|.|.+|.+.. -|..++
T Consensus 204 ----------lp~El~~-LpLi~lDfScNkis-----------------~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC 254 (722)
T KOG0532|consen 204 ----------LPEELCS-LPLIRLDFSCNKIS-----------------YLPVDFRKMRHLQVLQLENNPLQS-PPAQIC 254 (722)
T ss_pred ----------CCHHHhC-CceeeeecccCcee-----------------ecchhhhhhhhheeeeeccCCCCC-ChHHHH
Confidence 0111121 24777888888776 356678888888888888888876 555444
Q ss_pred ---hccCccEEEEeCCC
Q 035647 777 ---LLNKLKKLYLTHCN 790 (938)
Q Consensus 777 ---~l~~L~~L~L~~~~ 790 (938)
...-.++|+..-|.
T Consensus 255 ~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 255 EKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hccceeeeeeecchhcc
Confidence 34456677777773
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.3e-10 Score=115.72 Aligned_cols=218 Identities=17% Similarity=0.158 Sum_probs=146.6
Q ss_pred cchhccCCCcccEEeecCCCCCcccch--hhhcccCCCeEEeCCccccc---cCccCCCCCCCCcCCceEecCCCCCCCC
Q 035647 601 LPETCCELCNLQTIEIEECSNLRRLPQ--RIGKLVNLRHLIFVDVYLDY---MPKGIERLTCLRTLSEFVVSGRGKYGNK 675 (938)
Q Consensus 601 lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~~~~~~~~~~~~~~ 675 (938)
+-..=+++.+|+...|++|. +...+. ....|++++.|+++.|-+.. +-.-+..|++|+.|.++.|........
T Consensus 113 i~akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s- 190 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS- 190 (505)
T ss_pred HHHHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-
Confidence 33344567788888888887 666663 56788899999998886432 223356788888888776654431100
Q ss_pred ccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCC
Q 035647 676 ACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPP 755 (938)
Q Consensus 676 ~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (938)
.. -..+++|+.|.++.|+++. ..+...+..+|
T Consensus 191 --------------------------~~-------~~~l~~lK~L~l~~CGls~---------------k~V~~~~~~fP 222 (505)
T KOG3207|consen 191 --------------------------NT-------TLLLSHLKQLVLNSCGLSW---------------KDVQWILLTFP 222 (505)
T ss_pred --------------------------cc-------hhhhhhhheEEeccCCCCH---------------HHHHHHHHhCC
Confidence 00 0134678889999998874 45666677889
Q ss_pred CcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCC--CCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCC
Q 035647 756 NIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEI--MPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSS 833 (938)
Q Consensus 756 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 833 (938)
+|+.|+|.+|......-.....+..|+.|+|++|...+. .+..+.+|.|+.|.++.|. +.++..- ...+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~--------d~~s 293 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEP--------DVES 293 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCC--------Cccc
Confidence 999999999964332223344688999999999986554 4678899999999998865 4443210 0111
Q ss_pred CcccccCCccceeeccCccccccccccccccccCCcccEEeecCCc
Q 035647 834 SSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCS 879 (938)
Q Consensus 834 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 879 (938)
......||+|++|++..|+ ..+|.... .+..+++|+.|.+..|+
T Consensus 294 ~~kt~~f~kL~~L~i~~N~-I~~w~sl~-~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENN-IRDWRSLN-HLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhcccccceeeecccCc-cccccccc-hhhccchhhhhhccccc
Confidence 1123479999999999984 55665432 25578888998886654
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.74 E-value=1.6e-07 Score=97.89 Aligned_cols=171 Identities=20% Similarity=0.258 Sum_probs=101.6
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
..+++|....+.++++ ...+.-+.+||++|+||||||+.+... ....|.. ++...
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~~-----~sAv~--------- 83 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAFEA-----LSAVT--------- 83 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCceEE-----ecccc---------
Confidence 3455666555555554 346778899999999999999999985 4444432 11111
Q ss_pred HHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEE--EcCChH--HH-Hhc
Q 035647 258 IEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILV--TTRNEK--VV-RMM 331 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--~~-~~~ 331 (938)
....++...++.-+ ....+++.+|++|.|..-+..+-+.+ ||.-.+|.-|+| ||.++. +- ...
T Consensus 84 --------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 84 --------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred --------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 11222333333332 22348899999999977655555544 444455777777 455442 11 112
Q ss_pred ccCCeEecCCCChHHHHHHHHHhhcCCCCCCC--ch-hHHHHHHHHHhhcCCchhH
Q 035647 332 ESTDVISIKELSEQECWWLFKRFAFFGRPPSE--CE-QLVEIGQKIVGNCKGLPLA 384 (938)
Q Consensus 332 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~g~PLa 384 (938)
....++++++|+.++-.+++.+.+......-. .. -..+....|+..++|---+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 34679999999999999999883321111101 01 1133445578888877643
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=3.5e-09 Score=104.48 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=101.5
Q ss_pred cCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCC
Q 035647 710 NLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHC 789 (938)
Q Consensus 710 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~ 789 (938)
....++.|+.+++++|.++ .+.+++.-.|.++.|+++.|.+.. +.. +..+++|+.|+|++|
T Consensus 279 ~~dTWq~LtelDLS~N~I~-----------------~iDESvKL~Pkir~L~lS~N~i~~-v~n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-----------------QIDESVKLAPKLRRLILSQNRIRT-VQN-LAELPQLQLLDLSGN 339 (490)
T ss_pred ecchHhhhhhccccccchh-----------------hhhhhhhhccceeEEeccccceee-ehh-hhhcccceEeecccc
Confidence 3445678999999999876 466677788999999999999886 444 788999999999999
Q ss_pred CCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCc
Q 035647 790 NNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQ 869 (938)
Q Consensus 790 ~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 869 (938)
...+.-.+-..+.|.+.|.|..+. ++.+. .+..+-+|..|++++| ++..+.. -..++++|+
T Consensus 340 ~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS----------------GL~KLYSLvnLDl~~N-~Ie~lde-V~~IG~LPC 400 (490)
T KOG1259|consen 340 LLAECVGWHLKLGNIKTLKLAQNK-IETLS----------------GLRKLYSLVNLDLSSN-QIEELDE-VNHIGNLPC 400 (490)
T ss_pred hhHhhhhhHhhhcCEeeeehhhhh-Hhhhh----------------hhHhhhhheecccccc-chhhHHH-hcccccccH
Confidence 654444444567888999998754 43332 1346778899999987 4444432 234789999
Q ss_pred ccEEeecCCccccCCC
Q 035647 870 LISLELGSCSKLKSLP 885 (938)
Q Consensus 870 L~~L~l~~c~~l~~lp 885 (938)
|++|.+.+|| +..+|
T Consensus 401 LE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 401 LETLRLTGNP-LAGSV 415 (490)
T ss_pred HHHHhhcCCC-ccccc
Confidence 9999999998 54444
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=1.7e-07 Score=95.71 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=95.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
.+.+.|+|.+|+|||+|++.+++. .......+.|+++... .... ..+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~---------------------~~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFS---------------------PAVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhh---------------------HHHHhhcc-c
Confidence 357899999999999999999986 3223345667765321 0000 01111122 3
Q ss_pred eeeEEeCCCCCCC-cCCchh-hhhhhccC-CCCCEEE-EEcCC---------hHHHHhcccCCeEecCCCChHHHHHHHH
Q 035647 286 RFFLVLDDVWTDD-YSKWEP-FHNCLMHG-LRGSKIL-VTTRN---------EKVVRMMESTDVISIKELSEQECWWLFK 352 (938)
Q Consensus 286 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtr~---------~~~~~~~~~~~~~~l~~L~~~ea~~lf~ 352 (938)
.-+||+||+|... ...|+. +...+... ..|..+| +|++. +.+...+.....+++++++.++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3599999998632 234543 44434332 2355554 45543 3444555556799999999999999999
Q ss_pred HhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 353 RFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
+.++...-.. -.+...-|++.+.|..-++..+-..+
T Consensus 172 ~~a~~~~l~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIEL----SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8886443211 24555668888888776655544433
No 41
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.66 E-value=2.9e-07 Score=94.72 Aligned_cols=172 Identities=14% Similarity=0.080 Sum_probs=102.5
Q ss_pred chHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035647 184 RDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEG 263 (938)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 263 (938)
.+..++.+..++.. ...+.+.|+|.+|+|||+||+.+++. ........+++++..-.. ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 45567777776532 24568999999999999999999986 222334556665543211 00
Q ss_pred CCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcC-C-chhhhhhhcc-CCCCCEEEEEcCChH---------HHHhc
Q 035647 264 SAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYS-K-WEPFHNCLMH-GLRGSKILVTTRNEK---------VVRMM 331 (938)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~iivTtr~~~---------~~~~~ 331 (938)
. .+...+.+ .-+||+||++.-... . .+.+...+.. ...+.++|+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 11111222 348999999653322 2 2334444432 123458999888532 11122
Q ss_pred ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 332 ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 332 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
.....+++.+++.++...++...+-...... ..+..+.|++.+.|+|..+..+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQL----PDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2246899999999999999987653222111 23445667888999998776665443
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=3.7e-07 Score=102.21 Aligned_cols=178 Identities=20% Similarity=0.221 Sum_probs=103.2
Q ss_pred CccccchHHHHH---HHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNI---LKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
.+|+|++..+.. +..++.. .....+.++|++|+||||+|+.+++. ....| +.++.... .. .
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~---~~l~a~~~-~~-~--- 75 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF---EALSAVTS-GV-K--- 75 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEecccc-cH-H---
Confidence 468888877665 6666632 24557888999999999999999885 22222 22222111 11 1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEE--cCChH--HHHh
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVT--TRNEK--VVRM 330 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--~~~~ 330 (938)
++....+..... ..+++.+|++|+++.-...+.+.+...+.. |..++|. |.+.. +...
T Consensus 76 --------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 76 --------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred --------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 111122222111 135788999999976544444555544432 4455553 33332 1111
Q ss_pred -cccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHh
Q 035647 331 -MESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGS 390 (938)
Q Consensus 331 -~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~ 390 (938)
......+.+.+++.++..+++.+.+....... ..-..+..+.|++.|+|.|..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 12346899999999999999988653211100 012245566789999999976554433
No 43
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.63 E-value=9.5e-07 Score=106.59 Aligned_cols=312 Identities=15% Similarity=0.136 Sum_probs=174.1
Q ss_pred cccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEE---EeCCCCCHH---HHH
Q 035647 181 VRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWV---CVSDNFDEF---RIA 254 (938)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---~~~~~~~~~---~~~ 254 (938)
++||+.|++.|...+.... .+...++.|.|.+|||||+++++|... +...+...+-- ....+.... ..+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHH
Confidence 7899999999999987543 346679999999999999999999875 32222111111 112222221 222
Q ss_pred HHHHHHh-------------------cCCCCC----------------------cccHHH-----HHHHHHHhhc-Ccee
Q 035647 255 KAIIEAL-------------------EGSAPN----------------------LGELQS-----LLQHIYASIV-GKRF 287 (938)
Q Consensus 255 ~~i~~~l-------------------~~~~~~----------------------~~~~~~-----~~~~l~~~l~-~~~~ 287 (938)
++++.++ +..... ....+. ....+..... .++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 2222222 211000 000011 1111222222 5699
Q ss_pred eEEeCCCCCCCcCCchhhhhhhccCCC-----CCEEEEEcCCh----HHHHhcccCCeEecCCCChHHHHHHHHHhhcCC
Q 035647 288 FLVLDDVWTDDYSKWEPFHNCLMHGLR-----GSKILVTTRNE----KVVRMMESTDVISIKELSEQECWWLFKRFAFFG 358 (938)
Q Consensus 288 LlVlDdv~~~~~~~~~~l~~~l~~~~~-----gs~iivTtr~~----~~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~ 358 (938)
++|+||+..-|....+-+. .+..... ...|..+.... .+.........+.|.||+..+...+........
T Consensus 157 Vi~leDlhWaD~~SL~lL~-~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQ-LLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred EEEEecccccChhHHHHHH-HHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 9999999544433333222 2222111 11333333322 222222345799999999999999998876332
Q ss_pred CCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCC------CCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcH
Q 035647 359 RPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFK------RTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPS 432 (938)
Q Consensus 359 ~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 432 (938)
. ....+....|+++..|+|+-+..+-+.+..+ .+...|+.-..+. ...... +.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~-~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATT-DAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhh-HHHHHHHHHHHhcCCH
Confidence 2 2234566779999999999999999888764 3344454332111 111111 2256678888999999
Q ss_pred HHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccCCchHHHHHHHHHHHHHhcccCcccc--cCC-CCCee-eEEecH
Q 035647 433 MIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEIIGQEYFDCLATRSFFQDFV--HDD-EGTVI-GCKMHD 508 (938)
Q Consensus 433 ~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~--~~~-~~~~~-~~~mh~ 508 (938)
..+..+...||+-.. |+.+-|...|-. .....+...++.|....++...+ +.. +.... |--.|+
T Consensus 309 ~t~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 999999999999654 445555544421 22344555556665544443211 111 11111 114677
Q ss_pred HHHHHHHHh
Q 035647 509 IVHDFARYL 517 (938)
Q Consensus 509 li~~~~~~~ 517 (938)
++++.+-..
T Consensus 377 ~vqqaaY~~ 385 (849)
T COG3899 377 RVQQAAYNL 385 (849)
T ss_pred HHHHHHhcc
Confidence 777776554
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=5.9e-08 Score=90.20 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=79.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccc---cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVI---NNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYAS 281 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 281 (938)
+.+++.|+|.+|+|||++++.++++.... ..-..++|+.+....+...+...++++++.......+..+..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 45789999999999999999999862110 013457799998888999999999999997766545666677778877
Q ss_pred hcCc-eeeEEeCCCCCC-CcCCchhhhhhhccCCCCCEEEEEcCC
Q 035647 282 IVGK-RFFLVLDDVWTD-DYSKWEPFHNCLMHGLRGSKILVTTRN 324 (938)
Q Consensus 282 l~~~-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 324 (938)
+... ..+||+|+++.- +...++.+.. +.+ ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 7644 469999999543 3222333332 222 556677777764
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.6e-08 Score=96.61 Aligned_cols=131 Identities=20% Similarity=0.275 Sum_probs=47.5
Q ss_pred cCCCCCcceEEEeecCCCCCCCchhh-hccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCC
Q 035647 751 LQAPPNIESLEMCYYKGKTALPSWVV-LLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHH 829 (938)
Q Consensus 751 l~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 829 (938)
+..+.++++|+|+||.+.. +. .++ .+.+|+.|+|++|. .+.++.+..+++|+.|+++++. ++++++.+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l------- 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGL------- 83 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHH-------
T ss_pred ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccch-------
Confidence 3345578889999998876 43 455 57889999999985 4456677788889999888865 55543221
Q ss_pred CCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC----cCCCCCCCccEEEEcCC
Q 035647 830 SSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP----VDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 830 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~c 902 (938)
...||+|+.|++++| .+.++... ..+..+|+|+.|++.+||.... + ..+..+|+|+.||-...
T Consensus 84 -------~~~lp~L~~L~L~~N-~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 84 -------DKNLPNLQELYLSNN-KISDLNEL-EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -------HHH-TT--EEE-TTS----SCCCC-GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred -------HHhCCcCCEEECcCC-cCCChHHh-HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 125888888888877 45555432 2256788899999988885433 3 23445777887775444
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=2.1e-09 Score=115.33 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=95.1
Q ss_pred cCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccc
Q 035647 606 CELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDL 685 (938)
Q Consensus 606 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L 685 (938)
..|..-.+.||+.|+ +.++|.+++.+..|..|.++.|.+..+|..+++|..|..|++..+.... |
T Consensus 72 ~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~--------------l 136 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH--------------L 136 (722)
T ss_pred ccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc--------------C
Confidence 345555678888888 8899999999999999999999899999989888888888766543322 0
Q ss_pred cccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeec
Q 035647 686 NNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYY 765 (938)
Q Consensus 686 ~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 765 (938)
. ..+..+ -|+.|-+++|.++. +++.++....|..|+.+.|
T Consensus 137 p----------------------~~lC~l-pLkvli~sNNkl~~-----------------lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 137 P----------------------DGLCDL-PLKVLIVSNNKLTS-----------------LPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred C----------------------hhhhcC-cceeEEEecCcccc-----------------CCcccccchhHHHhhhhhh
Confidence 0 000000 14444455554432 2333444455555555666
Q ss_pred CCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcc
Q 035647 766 KGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDE 821 (938)
Q Consensus 766 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 821 (938)
.+.+ +|+.++.+.+|+.|.+..|...+.+++++.|| |..|+++. .++.++|..
T Consensus 177 ei~s-lpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~ 229 (722)
T KOG0532|consen 177 EIQS-LPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSC-NKISYLPVD 229 (722)
T ss_pred hhhh-chHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeeccc-Cceeecchh
Confidence 5555 55555566666666666555555555555332 55555543 235555543
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=3.2e-06 Score=96.74 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=114.4
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc-------------------cCCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI-------------------NNFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 239 (938)
.+++|.+..++.|..++... .-.+.+.++|..|+||||+|+.+.+...-. +.|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 57899999999999998532 235677899999999999999888752111 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
++++....... +++.++++.... -..++.-++|||++..-+...++.++..+.......++
T Consensus 91 iEIDAas~rgV------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDAASNRGV------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecccccccH------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 23222211111 111222222111 11245568999999765556677788777666667788
Q ss_pred EEEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHH
Q 035647 319 LVTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIG 389 (938)
Q Consensus 319 ivTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a 389 (938)
|+||.+.. +...+ .....+.+..++.++..+.+.+.+...+...+ .+....|++.++|..- |+..+-
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 88777643 22222 23568999999999999999887644332222 3445669999988664 555433
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=8.3e-09 Score=106.96 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=109.7
Q ss_pred HhhhcCCCCCcceEEEeecCCCCCCCch-h-hhccCccEEEEeCCCCCCCCC--CC-CCCCCccceeeccccCceEeCcc
Q 035647 747 ISEALQAPPNIESLEMCYYKGKTALPSW-V-VLLNKLKKLYLTHCNNCEIMP--SL-GKLPSLEILQIIGMRSVKRVGDE 821 (938)
Q Consensus 747 ~~~~l~~~~~L~~L~L~~~~~~~~lp~~-~-~~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~ 821 (938)
+...-..+..|+.|+.+++...+..+-| + .+.++|+.|-+..|+..+..- .+ .+.+.|+.+++..|..+... .
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t 363 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--T 363 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--h
Confidence 3444456778899998887765434433 2 277899999999998544322 23 36788999998887643321 1
Q ss_pred cccCCCCCCCCCCcccccCCccceeeccCcccccccc--ccccccccCCcccEEeecCCccccC-CCcCCCCCCCccEEE
Q 035647 822 FWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWE--IEKEDIAVMPQLISLELGSCSKLKS-LPVDLLRSQKLKMLE 898 (938)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~ 898 (938)
+... -.++|.|+.|.++.|...++-. .....-.++..|+.|.+.+|+.+.+ .-+.+..+++|+.++
T Consensus 364 L~sl-----------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 364 LASL-----------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred Hhhh-----------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 1111 1378999999999886555431 1122235788999999999997764 345677899999999
Q ss_pred EcCCcchHHhhccCCCCCcccccCcCceeecc
Q 035647 899 IYNCPILKERFKKDVGEDWAKIFHIPNIQING 930 (938)
Q Consensus 899 l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~ 930 (938)
+.+|..+.+.-.+ +..+|+|.+.++.
T Consensus 433 l~~~q~vtk~~i~------~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 433 LIDCQDVTKEAIS------RFATHLPNIKVHA 458 (483)
T ss_pred eechhhhhhhhhH------HHHhhCccceehh
Confidence 9999877654221 2346777777653
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1e-05 Score=87.67 Aligned_cols=210 Identities=16% Similarity=0.190 Sum_probs=130.5
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
+..+.+|+++++++...|...-. +..+.-+.|+|.+|+|||+.++.+++..+....=..+++|++....+..+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 34589999999999998865432 2233349999999999999999999863322111227999999999999999999
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhc--CceeeEEeCCCCCCCcCCchhhhhhhccCC-CCCEEEE--EcCChHHHHhcc
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIV--GKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-RGSKILV--TTRNEKVVRMME 332 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~iiv--Ttr~~~~~~~~~ 332 (938)
++.++..........+..+.+.+.+. ++.+++|||++..-....-+.+...+.... ..++|++ .+-+......+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99997443333445566677777765 579999999995421111133444333322 2454433 444433332221
Q ss_pred -------cCCeEecCCCChHHHHHHHHHhhcCC-CCCCCchhHHH-HHHHHHhhcCCchhHHHHHH
Q 035647 333 -------STDVISIKELSEQECWWLFKRFAFFG-RPPSECEQLVE-IGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 333 -------~~~~~~l~~L~~~ea~~lf~~~~~~~-~~~~~~~~~~~-~~~~i~~~~~g~PLai~~~a 389 (938)
....+...|-+.+|-.+.+..++-.. .+....+...+ ++...++..|-.-.|+..+.
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 12347888999999999998876422 22222333333 33333444444444555443
No 50
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=3.3e-06 Score=89.80 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=107.1
Q ss_pred ccccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHH
Q 035647 174 SLINVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRI 253 (938)
Q Consensus 174 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 253 (938)
.+.+.+.|+||++|+..+...|.+.+. ...+++.|+|++|+|||||++.+..... ...++++.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHH
Confidence 344667899999999999999964322 2456999999999999999999997522 123333333 67999
Q ss_pred HHHHHHHhcCCCCCcc-c-HHHHHHHHHHhh-c-CceeeEEeCCCCCCC-cCCchhhhhhhccCCCCCEEEEEcCChHHH
Q 035647 254 AKAIIEALEGSAPNLG-E-LQSLLQHIYASI-V-GKRFFLVLDDVWTDD-YSKWEPFHNCLMHGLRGSKILVTTRNEKVV 328 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~-~-~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 328 (938)
+..++.+|+.+..... + .+.+.+.+.+.- . +++.+||+-==+..+ ...++.. -.|.....-|+|++----+.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcc
Confidence 9999999997432221 1 122333333322 2 566677664321111 1112221 1244556678898877655544
Q ss_pred Hhc---ccCCeEecCCCChHHHHHHHHHhh
Q 035647 329 RMM---ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 329 ~~~---~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
... ....-|-+++++.++|.++-.+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 322 224578999999999999876543
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.50 E-value=1.8e-06 Score=94.87 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCC-eEEEEEeCCCCCH--HHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD-KRMWVCVSDNFDE--FRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~ 255 (938)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++.... ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 56899999999999888532 334578999999999999999987522 11221 2345544321100 00000
Q ss_pred --HHHHHhcCCCCCcccHHHHHHHH----HHhh--cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-
Q 035647 256 --AIIEALEGSAPNLGELQSLLQHI----YASI--VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK- 326 (938)
Q Consensus 256 --~i~~~l~~~~~~~~~~~~~~~~l----~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~- 326 (938)
.....++.............+.+ .... ...+-+||+||+..-.......+...+......+++|+|+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000000000000011112221 1111 13455899999954332333445555544445677888875432
Q ss_pred HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 327 VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 327 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
+...+ .....+++.+++.++...++.+.+...+.... .+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 22222 22457899999999999999887644332222 34556688888887765443
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.3e-06 Score=92.70 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=109.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccC-------------------CCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINN-------------------FDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 239 (938)
.+++|.+..++.+...+... .-.+.+.++|++|+||||+|+.+++...-... +...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 56899999999998888532 23567899999999999999999875211111 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+++..+.... ..+..+..+.+... ..+++-++|+|++..-....++.+...+.......++
T Consensus 91 ~~~~~~~~~~------------------v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 91 IEIDAASRTK------------------VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EEecccccCC------------------HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1221111001 11111111111111 1245569999999654444566677776665556677
Q ss_pred EEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 319 LVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 319 ivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
|++|.+. .+...+ +....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.|-.+
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 7776543 233222 2356899999999999998887664332211 2345566899999988643
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.3e-07 Score=101.97 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=111.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.+..++... .-.+.+.++|++|+||||+|+.+++...-.+.+....|.+.+.. ........-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCce
Confidence 46899999888888888543 24567899999999999999999875321122211122211100 0000000000
Q ss_pred HHhcCC-CCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHHHhc-ccC
Q 035647 259 EALEGS-APNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVVRMM-EST 334 (938)
Q Consensus 259 ~~l~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~~~~-~~~ 334 (938)
..+... .....++.++...+.. ...+++-++|+|+++.-....++.+...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000000 0011112222222221 12256679999999765555667777777665555566665543 3333322 235
Q ss_pred CeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 335 DVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 335 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
..+++.+++.++..+.+.+.+...+... ..+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 6899999999999999988775433222 2345667999999998644
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.45 E-value=4.4e-05 Score=89.26 Aligned_cols=203 Identities=17% Similarity=0.186 Sum_probs=116.4
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC---CeEEEEEeCCC---CCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF---DKRMWVCVSDN---FDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 252 (938)
++++|++..+..+...+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999988877432 34579999999999999999998753322222 12234443221 11222
Q ss_pred HHHHH---------------HHHhcCCCC----------------Cccc-HHHHHHHHHHhhcCceeeEEeCCCCCCCcC
Q 035647 253 IAKAI---------------IEALEGSAP----------------NLGE-LQSLLQHIYASIVGKRFFLVLDDVWTDDYS 300 (938)
Q Consensus 253 ~~~~i---------------~~~l~~~~~----------------~~~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~ 300 (938)
+...+ +...+.... +... ....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 11111 111111000 0011 123467788888889999998888777777
Q ss_pred CchhhhhhhccCCCCCEEEE--EcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHh
Q 035647 301 KWEPFHNCLMHGLRGSKILV--TTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVG 376 (938)
Q Consensus 301 ~~~~l~~~l~~~~~gs~iiv--Ttr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~ 376 (938)
.|+.+...+..+.+...|++ ||++.. +...+ .....+.+.+++.+|.++++++.+..... ... .+..+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHH
Confidence 78887766665555555555 566432 11111 12347788999999999999987642211 111 233334444
Q ss_pred hcCCchhHHHHHHhh
Q 035647 377 NCKGLPLAAKTIGSL 391 (938)
Q Consensus 377 ~~~g~PLai~~~a~~ 391 (938)
.+..-+-|+..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 444334555544433
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=1.8e-05 Score=90.58 Aligned_cols=248 Identities=15% Similarity=0.137 Sum_probs=138.5
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
-.+++|++..++.+.+++..... ....+.+.|+|++|+||||+|+.++++. .|+ ++-+++++..+.. ....+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHH
Confidence 35699999999999999865321 1236789999999999999999999862 233 3334444432222 22222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc----CCchhhhhhhccCCCCCEEEEEcCChH-HHH-hc
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY----SKWEPFHNCLMHGLRGSKILVTTRNEK-VVR-MM 331 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~-~~ 331 (938)
+....... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22211110 00113678999999964221 224445544442 2345666665422 111 11
Q ss_pred -ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCC-C--CHHHHHHHHhh
Q 035647 332 -ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFK-R--TREEWESVLNS 407 (938)
Q Consensus 332 -~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~-~--~~~~w~~~l~~ 407 (938)
.....+.+.+++.++....+...+...+...+ .+....|++.++|..-.+......+... . +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 23568999999999999988877654433222 3456678999999876655443333332 1 2333332221
Q ss_pred hcccchhhhchhhhhhhhccc-CCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccc
Q 035647 408 EMWWFEELEKYLFAPLLLSYN-DLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQ 467 (938)
Q Consensus 408 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~ 467 (938)
.+....++.++..-+. .-+......+.. ..++. ..+-.|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1122345666665544 222333333222 12233 35678999988764
No 56
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=2.4e-07 Score=97.33 Aligned_cols=291 Identities=19% Similarity=0.167 Sum_probs=179.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCC-eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD-KRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..|-+.++|.|||||||++-.+.. ....|. .+.++.....-+...+...+...++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 567899999999999999999887 456785 455565555555555665666666654322 1233445566667
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHHhcccCCeEecCCCChH-HHHHHHHHhhcCCCCC-
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMMESTDVISIKELSEQ-ECWWLFKRFAFFGRPP- 361 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~~~~~~~l~~L~~~-ea~~lf~~~~~~~~~~- 361 (938)
+++.++|+||..+- .++-..+...+..+...-.|+.|+|..-. ..+.....+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 88999999998431 12222344455566666788999986532 234567778887765 7999987776443332
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHHHHhhhcccch-------hhhchhhhhhhhcccCCcHHH
Q 035647 362 SECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWESVLNSEMWWFE-------ELEKYLFAPLLLSYNDLPSMI 434 (938)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~~l~~~~~~~~-------~~~~~i~~~l~~sy~~L~~~~ 434 (938)
.-.........+|.+...|.|++|..++...+.- ...+....++....... --.......+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1223345667889999999999999999988754 33333333322111111 112347888999999999999
Q ss_pred HHHHhhhcCCCCCcccchhHHHHHHHHcCCcc-ccCCchHHHHHHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHH
Q 035647 435 KQCFLYCTVFPKDYNIEKDELIKLWMAQGYIE-QKGNKEMEIIGQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDF 513 (938)
Q Consensus 435 k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~-~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~ 513 (938)
+-.|..++.|...|... ...|.+-|-.. ... -....-+-.+++.++....... +. ..|+.-+..+.|
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~-----y~~~~a~~ll~~kslv~a~~~~--~~-a~~Rl~eT~r~Y 309 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDVPR-----YLVLLALTLLVDKSLVVALDLL--GR-ARYRLLETGRRY 309 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccccch-----HHHHHHHHHHhhccchhhhhhh--hH-HHHHHHHHHHHH
Confidence 99999999998776644 23444433221 111 1122224556666665433211 11 224555555555
Q ss_pred HHHhh
Q 035647 514 ARYLT 518 (938)
Q Consensus 514 ~~~~~ 518 (938)
+..+.
T Consensus 310 alaeL 314 (414)
T COG3903 310 ALAEL 314 (414)
T ss_pred HHHHH
Confidence 55443
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.8e-06 Score=94.30 Aligned_cols=181 Identities=15% Similarity=0.144 Sum_probs=112.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc-------------------CCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN-------------------NFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 239 (938)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++...-.. .|.-+
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 57899999999999998633 2357889999999999999999987521110 11111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+.++...... ..++.++...+. ....++.-++|+|++..-+....+.+...+.....+.++
T Consensus 90 iEIDAAs~~~------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 90 IEIDAASRTK------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred EEecccccCC------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 2222111111 111122222111 112356669999999665555666677776665566778
Q ss_pred EEEcCChH-HHHh-cccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 319 LVTTRNEK-VVRM-MESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 319 ivTtr~~~-~~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
|++|.+.. +... ......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+..+.
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 87776532 2211 234578999999999999998877644332222 3445668999999885443
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=4.6e-06 Score=89.96 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=115.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccc----ccccCCCeEEEEEe-CCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDS----CVINNFDKRMWVCV-SDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 253 (938)
.+++|.+..++.+...+... .-.+...++|+.|+||||+|+.+++.. ....|.|...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 46789999999999988532 245688999999999999999998741 12345565555442 22222222
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHH-Hhc-
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVV-RMM- 331 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~-~~~- 331 (938)
.+++.+.+.. ....+++-++|+|+++.-+...++.+...+..-..++.+|++|.+.+.. ..+
T Consensus 78 ir~~~~~~~~----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNK----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhc----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 1122222211 1122556678888875555567888888888777788988888765422 222
Q ss_pred ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 332 ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 332 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
.....+.+.+++.++....+.+...+ . ..+.+..++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----I----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----C----CHHHHHHHHHHcCCCHHHHHH
Confidence 23568999999999998888665311 1 123356788999999875543
No 59
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=7.7e-07 Score=81.91 Aligned_cols=119 Identities=22% Similarity=0.299 Sum_probs=78.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
+++.|.|+.|+||||++++++++.. .-..++++++.+....... ..+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 5899999999999999999997622 3356777776653221100 000 2223333333478
Q ss_pred eeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHHh-----c-ccCCeEecCCCChHHH
Q 035647 287 FFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRM-----M-ESTDVISIKELSEQEC 347 (938)
Q Consensus 287 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~-----~-~~~~~~~l~~L~~~ea 347 (938)
.+++||++.. ...|......+.+..+..+|++|+.+...... . +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8999999954 45677766666665567899999997665532 1 2244789999998774
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=1.1e-06 Score=83.47 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035647 182 RGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEAL 261 (938)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 261 (938)
.|++..++.+...+... ..+.+.|+|.+|+|||++++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888999998888532 356899999999999999999998632 222456677665533322211111100
Q ss_pred cCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccC------CCCCEEEEEcCChH
Q 035647 262 EGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHG------LRGSKILVTTRNEK 326 (938)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 326 (938)
............++.++|+||++.-.......+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111222356789999999642112222333333332 35778888888653
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.2e-07 Score=106.74 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=65.0
Q ss_pred cccccCCCCceEEEEecCCCcchhhhhhhhhccC-cccccC-----CCCcchhccCCCcccEEeecCCCCCcccchhhhc
Q 035647 558 PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLT-CLRALR-----TEELPETCCELCNLQTIEIEECSNLRRLPQRIGK 631 (938)
Q Consensus 558 ~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~-~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 631 (938)
...+...+.++.|.+.++ ....++.....+. +|+.|+ +..+|..+..+++|+.|+++.|+ +.++|...+.
T Consensus 109 ~~~~~~~~~l~~L~l~~n---~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 109 ISELLELTNLTSLDLDNN---NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred chhhhcccceeEEecCCc---ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhh
Confidence 333444566666666663 3344444444453 666665 55555666777777777777776 7777766667
Q ss_pred ccCCCeEEeCCccccccCccCCCCCCCCcCCceEe
Q 035647 632 LVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVV 666 (938)
Q Consensus 632 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 666 (938)
+++|+.|++++|.+..+|..++.+..|++|.+..+
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 77777777777777777766655555666655443
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.6e-06 Score=96.73 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=113.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccC-------------------CCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINN-------------------FDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 239 (938)
.+++|.+..++.+..++... .-.+.+.++|.+|+||||+|+.+++...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 57899999999998888532 23556789999999999999999975211100 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
++++..... ...++.++.+.+.. ...+++-++|||++..-.....+.|+..+-......++
T Consensus 91 iEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222111111 11122222222221 12366779999999765556677777777665556666
Q ss_pred EEEcCC-hHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 319 LVTTRN-EKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 319 ivTtr~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
|++|.+ ..+...+ .....|.+.+++.++..+++.+.+-..+... ..+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 666654 3333222 2357899999999999999988664322111 2345566999999988644443
No 63
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=8.1e-08 Score=91.83 Aligned_cols=134 Identities=24% Similarity=0.266 Sum_probs=50.5
Q ss_pred CccccccCceEEEecCCCCCCccccccccccccHHHHhhhcC-CCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCC
Q 035647 711 LDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQ-APPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHC 789 (938)
Q Consensus 711 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~ 789 (938)
..+..++++|++.+|.++. .+.+. .+.+|+.|++++|.+.. ++ .+..++.|+.|++++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~------------------Ie~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST------------------IENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNN 74 (175)
T ss_dssp ---------------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS
T ss_pred ccccccccccccccccccc------------------ccchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCC
Confidence 3344578899999988762 23444 46789999999999887 65 3677899999999999
Q ss_pred CCCCCCCCC-CCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCC
Q 035647 790 NNCEIMPSL-GKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMP 868 (938)
Q Consensus 790 ~~~~~l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 868 (938)
...+..+.+ ..+|+|++|+++++. +..+.. ...+..+|+|+.|++.+||--..-.--..-+..+|
T Consensus 75 ~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~-------------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 75 RISSISEGLDKNLPNLQELYLSNNK-ISDLNE-------------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp ---S-CHHHHHH-TT--EEE-TTS----SCCC-------------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred CCCccccchHHhCCcCCEEECcCCc-CCChHH-------------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 765543334 358999999998865 444332 11256899999999999875432111112255889
Q ss_pred cccEEeecCC
Q 035647 869 QLISLELGSC 878 (938)
Q Consensus 869 ~L~~L~l~~c 878 (938)
+|+.||-...
T Consensus 141 ~Lk~LD~~~V 150 (175)
T PF14580_consen 141 SLKVLDGQDV 150 (175)
T ss_dssp T-SEETTEET
T ss_pred hhheeCCEEc
Confidence 9999987654
No 64
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.40 E-value=1.5e-06 Score=84.87 Aligned_cols=182 Identities=20% Similarity=0.171 Sum_probs=96.8
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
-.+|+|.+.-++.+.-++..... .++...-+.+||++|+||||||.-+++. ....|. +++...-..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k-------- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEK-------- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--S--------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhh--------
Confidence 36799999888886655543211 2346778999999999999999999986 333432 232211000
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccC--------C-----------CCCEE
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHG--------L-----------RGSKI 318 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~-----------~gs~i 318 (938)
. .++...+. .+ +++-+|++|++..-+..+-+.+...+.++ + +-+-|
T Consensus 89 ----------~---~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 89 ----------A---GDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ----------C---HHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ----------H---HHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 1 11111111 12 23456777888554333333333333221 1 12234
Q ss_pred EEEcCChHHHHhcccC--CeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 319 LVTTRNEKVVRMMEST--DVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 319 ivTtr~~~~~~~~~~~--~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
=.|||...+...+... -..+++..+.+|-.++..+.+..-.. +-..+.+.+|++.+.|-|--+.-+-+..
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4588876555554432 24589999999999999887654332 3345678889999999997555444443
No 65
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.39 E-value=4.4e-07 Score=90.09 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV 232 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 232 (938)
.|+||+++++++...|... .....+.+.|+|.+|+|||+|+++++.....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999521 2346799999999999999999999887433
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.39 E-value=6.9e-06 Score=89.51 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=104.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEe--CCCCCHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCV--SDNFDEFRIAKA 256 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 256 (938)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++... ...+. ..++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 46899999999999988532 334579999999999999999987521 11121 112222 2211111 1111
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HHHhc-ccC
Q 035647 257 IIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRMM-EST 334 (938)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~~~ 334 (938)
.+..+....+ .....+-++|+|++..-.......+...+......+++|+++.... +.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111110000 0012356899999854333334456655555455677777775321 11111 224
Q ss_pred CeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 335 DVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 335 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
..+++.+++.++...++...+...+.... .+....+++.++|.+.-+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 57899999999999988887654332222 345566889999988653
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=7.5e-06 Score=88.48 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=105.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD-KRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 257 (938)
.+++|.++.++.+..++... ..+-+.++|++|+||||+|+.+++... ...|. .++-++.++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 46889998888888776432 334477999999999999999988521 11222 12222222222211 12222
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHHHhc-ccCC
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVVRMM-ESTD 335 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~~~~ 335 (938)
++.+...... .-.++.-++|+|+++.-.......+...+......+++|+++... .+...+ ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2211100000 001346799999996544344444555554444567777777543 222211 2245
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 336 VISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 336 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
.+++.+++.++....+...+...+...+ .+....|++.++|..-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 8999999999999998887644332222 344566889998877443
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=7.3e-06 Score=92.61 Aligned_cols=183 Identities=15% Similarity=0.157 Sum_probs=111.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc------------------------c
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI------------------------N 234 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------------~ 234 (938)
.+++|.+..++.|...+... .-.+.+.++|..|+||||+|+.+.+...-. +
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 47899999999999998533 245678999999999999999998742110 0
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCC
Q 035647 235 NFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL 313 (938)
Q Consensus 235 ~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 313 (938)
.|.-+++++..... ..+++.++.+.+.. -..++.-++|+|++..-+...++.|+..+..-.
T Consensus 91 ~hpDviEIdAas~~------------------gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 91 RFVDYIEMDAASNR------------------GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred CCCcceEecccccC------------------CHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 01111222211111 11122222222211 123566699999997655566777777766544
Q ss_pred CCCEEEEEcC-ChHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 314 RGSKILVTTR-NEKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 314 ~gs~iivTtr-~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
.++++|++|. ...+...+ .....+.+..++.++..+.+.+.+...+...+ .+..+.|++.++|.|.....+
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 5566555554 44444333 23568999999999999988876643322111 234466899999999754443
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.2e-05 Score=90.49 Aligned_cols=194 Identities=14% Similarity=0.204 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCe-EEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDK-RMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 257 (938)
.+++|-+..+..+...+... .-.+.+.++|++|+||||+|+.+++...-...... -.+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 46899999999888877532 23568899999999999999999875211110000 000000000 000111
Q ss_pred HHH-------hcC-CCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEE-EcCChHH
Q 035647 258 IEA-------LEG-SAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILV-TTRNEKV 327 (938)
Q Consensus 258 ~~~-------l~~-~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~~ 327 (938)
... +.. ......++.+..+... ..+.+++-++|+|+++.-+...++.+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 100 000 0011112222222211 11235677999999977655677788777766555666555 4444444
Q ss_pred HHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 328 VRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 328 ~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
...+ .....+++.+++.++....+.+.+...+...+ .+....|++.++|.+.-+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4433 23468999999999999999888754332222 334556888999987533
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.3e-05 Score=91.02 Aligned_cols=187 Identities=18% Similarity=0.154 Sum_probs=113.6
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc-------------------ccCCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV-------------------INNFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------------~~~f~~~ 239 (938)
.+++|.+..++.+...+... ...+.+.++|+.|+||||+|+.+++...- .+.|..+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999888532 23567889999999999999999874110 0112223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+++........ ++..++.+.+.. ...+++-++|+|++..-+...++.+...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 33332221111 122222222221 12356779999999665555677777777765556666
Q ss_pred EEEc-CChHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHHhhh
Q 035647 319 LVTT-RNEKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIGSLL 392 (938)
Q Consensus 319 ivTt-r~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a~~l 392 (938)
|++| ....+...+ .....+++.+++.++....+.+.+...+... ..+....|++.++|.+- |+..+-.++
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6544 433333232 3357999999999998888877553322211 23444568999999764 555544333
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=4.6e-06 Score=91.83 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=111.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..+..+..++... .-.+.+.++|+.|+||||+|+.+++...-..... ...+....+-..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 56899999999988888532 1245789999999999999999988521110000 001111111111111110
Q ss_pred HHhc-CC---CCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHHHhc-
Q 035647 259 EALE-GS---APNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVVRMM- 331 (938)
Q Consensus 259 ~~l~-~~---~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~~~~- 331 (938)
..+. .+ .....++.++.+.+... ..++.-++|+|++..-+...++.+...+.........|++|.. ..+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 0000 00 01112222333333221 2355669999999766666777777766554445555545543 3443333
Q ss_pred ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhH
Q 035647 332 ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLA 384 (938)
Q Consensus 332 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (938)
.....|.+.+++.++..+.+.+.+...+... ..+....|++.++|.+.-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHH
Confidence 2356799999999999998888764433212 234556699999998853
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=9.5e-07 Score=99.36 Aligned_cols=105 Identities=24% Similarity=0.327 Sum_probs=51.9
Q ss_pred CCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCC
Q 035647 753 APPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSS 832 (938)
Q Consensus 753 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 832 (938)
..++|+.|++++|.+.. +|..+..+..|+.|.+++|.....+..+..+.++..|.+.++. +..+
T Consensus 184 ~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~-------------- 247 (394)
T COG4886 184 NLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDL-------------- 247 (394)
T ss_pred hhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeec--------------
Confidence 44555556666665555 5554444445666666665544444455555555555544432 1111
Q ss_pred CCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCc
Q 035647 833 SSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCS 879 (938)
Q Consensus 833 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 879 (938)
+..++.+++|++|++++| .+.+++. ++.+.+|+.|+++++.
T Consensus 248 -~~~~~~l~~l~~L~~s~n-~i~~i~~----~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 248 -PESIGNLSNLETLDLSNN-QISSISS----LGSLTNLRELDLSGNS 288 (394)
T ss_pred -cchhccccccceeccccc-ccccccc----ccccCccCEEeccCcc
Confidence 111234555666666554 3333322 3355566666665554
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.29 E-value=4.1e-06 Score=85.55 Aligned_cols=130 Identities=23% Similarity=0.292 Sum_probs=85.3
Q ss_pred CCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 035647 203 QHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI 282 (938)
Q Consensus 203 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 282 (938)
++.+..+.+||++|+||||||+.+...... + .+.||..+.......-++.|.++-. . ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~--~--SyrfvelSAt~a~t~dvR~ife~aq--------------~-~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKK--H--SYRFVELSATNAKTNDVRDIFEQAQ--------------N-EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCC--C--ceEEEEEeccccchHHHHHHHHHHH--------------H-HHhh
Confidence 347888999999999999999999986222 2 2566766654333333344443221 1 1224
Q ss_pred cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEE--EcCChH---HHHhcccCCeEecCCCChHHHHHHHHHh
Q 035647 283 VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILV--TTRNEK---VVRMMESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 283 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~---~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
.++|.+|++|.|...+..+-+.+ ||.-..|.-++| ||.++. .+..+....++.|+.|+.++...++.+.
T Consensus 220 ~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 57899999999966554444433 556667877777 555543 2222345679999999999998888763
No 74
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=1.2e-06 Score=89.40 Aligned_cols=90 Identities=19% Similarity=0.092 Sum_probs=61.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCcccHH------HHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN--FDEFRIAKAIIEALEGSAPNLGELQ------SLLQ 276 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 276 (938)
....++|+|.+|+|||||+++++++.... +|+.++|+.+.++ .+..++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999975443 8999999998777 7888898888333221111111111 1122
Q ss_pred HHHHh-hcCceeeEEeCCCC
Q 035647 277 HIYAS-IVGKRFFLVLDDVW 295 (938)
Q Consensus 277 ~l~~~-l~~~~~LlVlDdv~ 295 (938)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22221 24789999999993
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=7e-06 Score=96.63 Aligned_cols=169 Identities=21% Similarity=0.302 Sum_probs=95.2
Q ss_pred CccccchHHHH---HHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMN---ILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
.+|+|.+..+. .+...+.. .....+.++|++|+||||+|+.+++. ....|. .+++.. ..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~------ 89 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AG------ 89 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hh------
Confidence 46889888774 45455532 24556789999999999999999985 333331 111110 00
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhh--cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEE--cCChH--HHH
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASI--VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVT--TRNEK--VVR 329 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--~~~ 329 (938)
..+..+........+ .+++.++|+||++.-+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 90 ------------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 90 ------------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ------------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 011112222222222 2467799999996544444444544332 35555553 33321 212
Q ss_pred hc-ccCCeEecCCCChHHHHHHHHHhhcC------CCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 330 MM-ESTDVISIKELSEQECWWLFKRFAFF------GRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 330 ~~-~~~~~~~l~~L~~~ea~~lf~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
.+ .....+.+++++.++...++.+.+-. .... .-..+....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v---~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKV---DLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCccc---CCCHHHHHHHHHhCCCCHH
Confidence 11 22457999999999999999876531 1111 1123445668888888654
No 76
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.27 E-value=8.6e-08 Score=94.83 Aligned_cols=107 Identities=23% Similarity=0.290 Sum_probs=82.4
Q ss_pred cccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCC
Q 035647 713 KKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNC 792 (938)
Q Consensus 713 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 792 (938)
-.+.++.|++++|.+.. .+.+..+++|+.|+|++|.+.. +..|-..+-+.+.|.|++| ..
T Consensus 305 L~Pkir~L~lS~N~i~~------------------v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N-~i 364 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRT------------------VQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQN-KI 364 (490)
T ss_pred hccceeEEeccccceee------------------ehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhh-hH
Confidence 34678889999988763 2346677899999999998877 7778778899999999998 55
Q ss_pred CCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccc
Q 035647 793 EIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYE 853 (938)
Q Consensus 793 ~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 853 (938)
+.+..++.+-+|..|+++++. ++.+.+ ...++.+|+|+.|.|.+||.
T Consensus 365 E~LSGL~KLYSLvnLDl~~N~-Ie~lde-------------V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 365 ETLSGLRKLYSLVNLDLSSNQ-IEELDE-------------VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhhHhhhhheeccccccc-hhhHHH-------------hcccccccHHHHHhhcCCCc
Confidence 677788888999999998865 443321 11267899999999998863
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.27 E-value=1.3e-05 Score=82.28 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=89.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
..+.+.|+|.+|+|||+||+.+++... ... ..++++++.... .. + ... .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~------------------~~~-~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F------------------DFD-P 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H------------------hhc-c
Confidence 346789999999999999999998521 112 234555543311 00 0 111 2
Q ss_pred ceeeEEeCCCCCCCcCCchhhhhhhccC-CCCC-EEEEEcCChHHHH--------hcccCCeEecCCCChHHHHHHHHHh
Q 035647 285 KRFFLVLDDVWTDDYSKWEPFHNCLMHG-LRGS-KILVTTRNEKVVR--------MMESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 285 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~~~~--------~~~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
..-++|+||+..-+...-..+...+... ..+. .||+|++...... .+.....+++.+++.++-.+++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3447899999543222223344444331 2343 4677776433221 2222468999999999877777664
Q ss_pred hcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 355 AFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
+-..+... -.+....+++.+.|++..+..+...+
T Consensus 170 ~~~~~v~l----~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQL----ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 42222211 23455668888999998877776665
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.27 E-value=1.9e-05 Score=80.88 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=88.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
..+.|+|.+|+|||.|++.+++... .....++|+++.+ ....+. ...+ .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~~--------------~~~~----~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRLR--------------DALE----AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhHH--------------HHHH----HH-hcC
Confidence 4699999999999999999988632 2334566775432 111111 1111 11 234
Q ss_pred eeEEeCCCCCCC-cCCchh-hhhhhcc-CCCCCEEEEEcCChH---------HHHhcccCCeEecCCCChHHHHHHHHHh
Q 035647 287 FFLVLDDVWTDD-YSKWEP-FHNCLMH-GLRGSKILVTTRNEK---------VVRMMESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 287 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
-+||+||+.... ...|.. +...+.. ...|..||+|++... +...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 599999995321 122332 3332222 134667999998532 2222233568999999999999999987
Q ss_pred hcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 355 AFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
+...+-..+ .+...-|++.+.|..-.+
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 654322122 344556888887666544
No 79
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.2e-07 Score=95.96 Aligned_cols=128 Identities=16% Similarity=0.036 Sum_probs=89.2
Q ss_pred CceEEEEEEcCCCCCCc--ccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCC----cch---hccCCCccc
Q 035647 542 EELRHSILFLGYNASLP--VCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEE----LPE---TCCELCNLQ 612 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~----lp~---~i~~L~~L~ 612 (938)
+++|.+++.+......+ .....|+++|.|+|++|-...-..+......|++|+.|++++ +|. .-..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 67888888888877655 356789999999999974434455667788899999998432 221 123578899
Q ss_pred EEeecCCCCCcc--cchhhhcccCCCeEEeCCcc-ccccCccCCCCCCCCcCCceEecCCC
Q 035647 613 TIEIEECSNLRR--LPQRIGKLVNLRHLIFVDVY-LDYMPKGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 613 ~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~ 670 (938)
.|.|+.|. ++. +-.....+|+|..|++..|. +..--.....++.|+.|++..+....
T Consensus 201 ~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 201 QLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred eEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 99999998 542 33335578999999999985 21111224456778888887766544
No 80
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.26 E-value=2.2e-05 Score=80.61 Aligned_cols=201 Identities=21% Similarity=0.173 Sum_probs=123.7
Q ss_pred Cccccch---HHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc----ccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRD---EEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV----INNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~ 251 (938)
+.++|-. +.++++.++|..+ ...+..-+.|||.+|.|||++++++.+..-. ...--.|+.|.+...++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 4566653 3455666666544 3456678999999999999999999875211 1111268888889999999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC-ceeeEEeCCCCCC---CcCCchhhhh---hhccCCCCCEEEEEcCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVG-KRFFLVLDDVWTD---DYSKWEPFHN---CLMHGLRGSKILVTTRN 324 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~---~~~~~~~l~~---~l~~~~~gs~iivTtr~ 324 (938)
.++..|+.+++...................++. +--+||+|++.+- ...+-..+.. .+...-.=+-|.+.|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998876666666665555566653 4558999999541 1111122222 23333344567777765
Q ss_pred hHHHHhc-----ccCCeEecCCCChHH-HHHHHHHhh--cCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 325 EKVVRMM-----ESTDVISIKELSEQE-CWWLFKRFA--FFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 325 ~~~~~~~-----~~~~~~~l~~L~~~e-a~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
.--+-.. .....+.++.++.++ ...|+.... +.-+.++ .-...++++.|...++|+.=
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchH
Confidence 4322111 113466777766554 444443322 1111111 22346788999999999763
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.6e-05 Score=91.63 Aligned_cols=194 Identities=16% Similarity=0.195 Sum_probs=112.6
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.+...+... .-.+.+.++|..|+||||+|+.+++...-...+. ...+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 57899999999998888532 2345678999999999999999987521110000 00011111111111
Q ss_pred HH-------hcCC-CCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHH
Q 035647 259 EA-------LEGS-APNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVV 328 (938)
Q Consensus 259 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~ 328 (938)
.. +... ....+++.++.+.+.. ...+++-++|+|++..-+....+.|...+-......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000 0011122222222221 12356679999999765556677777777665556666665554 3333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
..+ .....|.+.+++.++..+.+.+.+-..+...+ .+....|++.++|.+-.+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 222 23578999999999999999876533222112 344466999999988644443
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.8e-05 Score=86.39 Aligned_cols=187 Identities=19% Similarity=0.174 Sum_probs=107.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc--C-----------------CCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN--N-----------------FDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~-----------------f~~~ 239 (938)
.+++|.+...+.+...+... .-.+.+.++|++|+||||+|+.+++...-.. . +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 56999988888887777532 2346789999999999999999987521100 0 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+.++........ ++....+.... ...+++-++|+|++..-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 222222111111 11111111111 12356679999999543334445566665544344454
Q ss_pred EEEcCC-hHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC-chhHHHHHHhhh
Q 035647 319 LVTTRN-EKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG-LPLAAKTIGSLL 392 (938)
Q Consensus 319 ivTtr~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~a~~l 392 (938)
|++|.+ ..+...+ .....+++.+++.++....+.+.+...+...+ .+....|++.++| .+.|+..+..+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444443 3333333 33568999999999999988887643332222 3445568877754 466777766544
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=4.1e-05 Score=84.79 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc--c------------------cCCCe
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV--I------------------NNFDK 238 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~------------------~~f~~ 238 (938)
.+++|.+..++.+...+... .-.+.+.++|++|+||||+|+.+++...- . .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46899999999999988532 23567899999999999999888765110 0 12222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCE
Q 035647 239 RMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSK 317 (938)
Q Consensus 239 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 317 (938)
++++....... .+..++.+.+.. ...+++-++|+|++..-.....+.+...+......+.
T Consensus 89 -~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 23322211111 111122222111 1224556899999854333445566666654445667
Q ss_pred EEEEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 318 ILVTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 318 iivTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
+|++|.+.. +...+ .....+++.+++.++..+++...+...+...+ .+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHHH
Confidence 777765543 22222 23457899999999999998887643332111 3556678999999986554443
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=8.2e-06 Score=93.38 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc-------------------CCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN-------------------NFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 239 (938)
.+++|.+..++.|..++... .-.+.+.++|..|+||||+|+.+++...-.. .|.-+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 57999999999999998642 2356789999999999999999987411110 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+.++...... ..++.+++..... -..+++-++|+|++..-+....+.+...+......+++
T Consensus 91 lEidaAs~~g------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTG------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCC------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 1222111111 1112222222111 12256679999999654444455566666554456677
Q ss_pred EEEcCChH-HHHh-cccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 319 LVTTRNEK-VVRM-MESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 319 ivTtr~~~-~~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
|++|.+.. +... .+....+.+.+++.++....+.+.+-..+...+ .+....|++.++|.+.-+..
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHHHH
Confidence 77765432 2222 123457888999999999999877654332222 34456699999998854433
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.21 E-value=3.4e-05 Score=79.12 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=92.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
.+.+.|+|++|+|||+|++.+++... ..-..+.++++..... ...+..+.+ . +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~-~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGM----E-Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHh----h-h
Confidence 35789999999999999999988522 2234456666532100 001111111 1 1
Q ss_pred eeeEEeCCCCCCC-cCCchh-hhhhhccC-CCC-CEEEEEcCChH---------HHHhcccCCeEecCCCChHHHHHHHH
Q 035647 286 RFFLVLDDVWTDD-YSKWEP-FHNCLMHG-LRG-SKILVTTRNEK---------VVRMMESTDVISIKELSEQECWWLFK 352 (938)
Q Consensus 286 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~ 352 (938)
--++++||+.... ...|+. +...+... ..| .++|+||+... ....+....++++.+++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999995422 133443 33333221 123 47999998542 22334456799999999999999988
Q ss_pred HhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 353 RFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
+++...+- .--++...-|++.+.|..-++..+-..+
T Consensus 178 ~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 76643221 1124556668888887766555444333
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=4.4e-06 Score=90.76 Aligned_cols=197 Identities=11% Similarity=0.020 Sum_probs=113.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEE---EEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMW---VCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~ 255 (938)
.+++|.+..++.+...+... .-.+.+.++|+.|+||+|+|..+++..--......... .........-...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 57999999999999988643 24668999999999999999888764110000000000 00000000001111
Q ss_pred HHHHHhcCC---------C-----CCcccHHHHHHHHHHhhc-----CceeeEEeCCCCCCCcCCchhhhhhhccCCCCC
Q 035647 256 AIIEALEGS---------A-----PNLGELQSLLQHIYASIV-----GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGS 316 (938)
Q Consensus 256 ~i~~~l~~~---------~-----~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 316 (938)
.+...-..+ . ...-.+++ +..+.+.+. +++-++|+|+++.-+....+.+...+..-..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111100000 0 00011233 223333332 566799999997666666777777776655566
Q ss_pred EEEEEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 317 KILVTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 317 ~iivTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
.+|++|.... +...+ .....+.+.+++.++..+++.+.... .. .+....+++.++|.|+.+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 7777776553 33332 23568999999999999999876411 11 1112568999999998665543
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.5e-05 Score=88.58 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=110.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|++..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-.. |... ..+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHH
Confidence 57899999999999988532 2356889999999999999999987521000 1110 0111111111111
Q ss_pred HHhcC-----CC---CCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHH
Q 035647 259 EALEG-----SA---PNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVV 328 (938)
Q Consensus 259 ~~l~~-----~~---~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~ 328 (938)
..... +. ...+++......+... ..+++-++|+|+++.-+...++.|...+......+.+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11000 00 0111122222222111 1234457999999654445666777766655455666655543 3333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHHh
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIGS 390 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a~ 390 (938)
..+ .....+++.+++.++....+...+...+...+ .+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 222 33568999999999999888876643322111 3445668999999664 4444433
No 88
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=5.2e-05 Score=80.78 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=134.2
Q ss_pred ccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 176 INVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..+....||+.|++.+.+++...- .....+.+.|.|.+|.|||.+...++.+..-...=-.++++++..-.....++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 345679999999999999986542 234677899999999999999999998733211113567888887778889999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhcC--ceeeEEeCCCCCCCcCCchhhhhhhcc-CCCCCEEEEEcCChH--HHHh
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASIVG--KRFFLVLDDVWTDDYSKWEPFHNCLMH-GLRGSKILVTTRNEK--VVRM 330 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~--~~~~ 330 (938)
.|...+-..........+....+.++... ..+|+|+|..+.-....-..+...|.+ .-+++|+|+.--... ....
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 99988832211122223444555555543 368999999854222222233333333 345667666443221 1111
Q ss_pred ----c-----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCC-chhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 331 ----M-----ESTDVISIKELSEQECWWLFKRFAFFGRPPSE-CEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 331 ----~-----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
+ -....+...|.+.++-.++|..+.-....... +..++-.|++++.-.|.+--|+.+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1 12457888999999999999988744332222 23455555666655566666666555444
No 89
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=4.5e-05 Score=77.35 Aligned_cols=143 Identities=16% Similarity=0.112 Sum_probs=86.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
.+.+.|+|.+|+|||+|++.++.... ..+++.. .+...+... +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 45689999999999999999887521 1233321 111111111 111
Q ss_pred eeeEEeCCCCCCCcCCchhhhhhhcc-CCCCCEEEEEcCCh---------HHHHhcccCCeEecCCCChHHHHHHHHHhh
Q 035647 286 RFFLVLDDVWTDDYSKWEPFHNCLMH-GLRGSKILVTTRNE---------KVVRMMESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~---------~~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
-+|++||+.... ..-+.+...+.. ...|..||+|++.. .....+.....+++++++.++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 278889995321 111224443332 23367899998742 233334556799999999999999999887
Q ss_pred cCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 356 FFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
....-. --+++..-|++.+.|..-++..+-
T Consensus 167 ~~~~~~----l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 167 ADRQLY----VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHcCCC----CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 442211 124556668888888777666433
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=2.8e-05 Score=84.06 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=115.0
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc--cCCCeEEEEEeCCCCCHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI--NNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
...++|.++..+.+...+... .-.+.+.|+|..|+||||+|+.+++..--. ..+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 457899999999999998543 245689999999999999999988751110 0011110 011111112223
Q ss_pred HHHHH-------hcCC--C-----CCcccHHHHHHHHHHhhc-----CceeeEEeCCCCCCCcCCchhhhhhhccCCCCC
Q 035647 256 AIIEA-------LEGS--A-----PNLGELQSLLQHIYASIV-----GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGS 316 (938)
Q Consensus 256 ~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 316 (938)
.+... +... . ...-.+++. ..+.+++. +++-++|+|+++.-+....+.+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33221 1000 0 011113332 23344432 566799999997655556667777776544445
Q ss_pred EEEEEc-CChHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 317 KILVTT-RNEKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 317 ~iivTt-r~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
.+|++| +...+...+ .....+.+.+++.++..+++.+.... .. -..+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--QG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--cC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544444 433333332 23569999999999999999874311 11 113345679999999998655443
No 91
>PF14516 AAA_35: AAA-like domain
Probab=98.18 E-value=0.00024 Score=76.94 Aligned_cols=202 Identities=12% Similarity=0.072 Sum_probs=118.8
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC-----CCHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN-----FDEF 251 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 251 (938)
+.+-.++|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..| .++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHH
Confidence 3455789987777777777532 458999999999999999999876332 233 4557776542 2345
Q ss_pred HHHHHHHHHhcCCCCC-----------cccHHHHHHHHHHhh-c--CceeeEEeCCCCCCC--cCCchhhhhhhcc----
Q 035647 252 RIAKAIIEALEGSAPN-----------LGELQSLLQHIYASI-V--GKRFFLVLDDVWTDD--YSKWEPFHNCLMH---- 311 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l-~--~~~~LlVlDdv~~~~--~~~~~~l~~~l~~---- 311 (938)
.+++.++..+.....- ..........+.+++ . +++.+|+||+++.-- ....+++...+..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 5555555555432110 011112222233332 2 689999999995321 1112233333321
Q ss_pred CC----CCCEEEEEcCChH--HHHh-----cccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC
Q 035647 312 GL----RGSKILVTTRNEK--VVRM-----MESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG 380 (938)
Q Consensus 312 ~~----~gs~iivTtr~~~--~~~~-----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 380 (938)
.. -..-.+|...+.+ .... ......+.|++++.+|...|...+-... . ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~----~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----S----QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----C----HHHHHHHHHHHCC
Confidence 11 0111222222211 1111 1224588999999999999998764221 1 1227779999999
Q ss_pred chhHHHHHHhhhcCC
Q 035647 381 LPLAAKTIGSLLRFK 395 (938)
Q Consensus 381 ~PLai~~~a~~l~~~ 395 (938)
+|..+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999664
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.9e-08 Score=96.09 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=104.2
Q ss_pred cccEEeecCCCCCcc--cchhhhcccCCCeEEeCCcccc-ccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccccc
Q 035647 610 NLQTIEIEECSNLRR--LPQRIGKLVNLRHLIFVDVYLD-YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLN 686 (938)
Q Consensus 610 ~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 686 (938)
.||+|||++.. ++. +-.-+..|.+|+.|.+.++.+. .+-..|.+-.+|+.|+++.++...
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t---------------- 248 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT---------------- 248 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc----------------
Confidence 36666776655 332 3334566777777777766533 222234555566666554443221
Q ss_pred ccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecC
Q 035647 687 NLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYK 766 (938)
Q Consensus 687 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 766 (938)
. .....-+.+++.|..|+++||.+... ....+...++ ++|..|+|+|+.
T Consensus 249 ---------------~--n~~~ll~~scs~L~~LNlsWc~l~~~------------~Vtv~V~his--e~l~~LNlsG~r 297 (419)
T KOG2120|consen 249 ---------------E--NALQLLLSSCSRLDELNLSWCFLFTE------------KVTVAVAHIS--ETLTQLNLSGYR 297 (419)
T ss_pred ---------------h--hHHHHHHHhhhhHhhcCchHhhccch------------hhhHHHhhhc--hhhhhhhhhhhH
Confidence 0 01122345677888899999977631 1111222222 578889998874
Q ss_pred CCC---CCCchhhhccCccEEEEeCCCCCCC--CCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCC
Q 035647 767 GKT---ALPSWVVLLNKLKKLYLTHCNNCEI--MPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFP 841 (938)
Q Consensus 767 ~~~---~lp~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 841 (938)
-.- .+..-...+++|..|+|++|..++. +..+-.++.|++|+++.|..+. |..+.. +...|
T Consensus 298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~------------l~s~p 363 (419)
T KOG2120|consen 298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLE------------LNSKP 363 (419)
T ss_pred hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeee------------eccCc
Confidence 321 1112233789999999999975543 2356788899999999987431 222211 23667
Q ss_pred ccceeeccCcc
Q 035647 842 KLKKLTLRGLY 852 (938)
Q Consensus 842 ~L~~L~l~~~~ 852 (938)
+|.+|++.+|-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 77777777763
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.2e-05 Score=84.81 Aligned_cols=180 Identities=18% Similarity=0.179 Sum_probs=111.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc------------------c-ccCCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC------------------V-INNFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------------~-~~~f~~~ 239 (938)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.-. + .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 57899999888888877532 2356899999999999999999876310 0 0111223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+.++......+.+ +.++.+... .-+.++.-++|+|++..-+....+.+...+....+.+++
T Consensus 88 ~eidaas~~~vdd------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 4444433222222 111111111 112245668999999655555566777777665566776
Q ss_pred EEEcCC-hHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 319 LVTTRN-EKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 319 ivTtr~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
|++|.. ..+...+ .....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+..+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 666643 3444333 33578999999999999999887654332222 344556899999887543
No 94
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=3.6e-07 Score=93.08 Aligned_cols=142 Identities=21% Similarity=0.194 Sum_probs=82.2
Q ss_pred ccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC----CCchhhhccCccEEEEeCC
Q 035647 714 KKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA----LPSWVVLLNKLKKLYLTHC 789 (938)
Q Consensus 714 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~L~~~ 789 (938)
...|+++..+.|.+...+ ...+-..++.++.|+.+.+..|.+... +-..+.++++|+.|+|.+|
T Consensus 156 ~~~Lrv~i~~rNrlen~g------------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGG------------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred CcceEEEEeecccccccc------------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 356777777777665321 133445566667778888777765420 1112336788888888877
Q ss_pred CCCCC----C-CCCCCCCCccceeeccccCceEeCcc-cc-cCCCCCCCCCCcccccCCccceeeccCccccccc-cccc
Q 035647 790 NNCEI----M-PSLGKLPSLEILQIIGMRSVKRVGDE-FW-GIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEW-EIEK 861 (938)
Q Consensus 790 ~~~~~----l-~~l~~l~~L~~L~L~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~ 861 (938)
..... + ..+..+++|+.|++++|. ++.-+.. +. .. -..+|+|+.|.+.+|..-.+- ....
T Consensus 224 tft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al-----------~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 224 TFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDAL-----------KESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred hhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHH-----------hccCCCCceeccCcchhHHHHHHHHH
Confidence 63321 1 135566778888888775 3322211 10 11 125788888888887533221 1222
Q ss_pred cccccCCcccEEeecCCc
Q 035647 862 EDIAVMPQLISLELGSCS 879 (938)
Q Consensus 862 ~~~~~l~~L~~L~l~~c~ 879 (938)
..+...|.|+.|+|++|.
T Consensus 292 ~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhcchhhHHhcCCccc
Confidence 224468899999999885
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.7e-05 Score=87.43 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=109.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc-------------------cCCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI-------------------NNFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 239 (938)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--. +.|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 56899999999999998533 235678999999999999999998742111 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+.++......++ ++.++.+.+.. ...++.-++|+|++..-+....+.+...+......+++
T Consensus 91 ~eidaas~~~v~------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVE------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHH------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 233222211111 11122221111 11245668999999765556667777777665556776
Q ss_pred EEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 319 LVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 319 ivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
|++|.+. .+...+ .....+++.+++.++....+.+.+-..+...+ .+....|++.++|.+.-+.
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHH
Confidence 6665443 333222 23467899999999988877666543322222 2334568888999885443
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=2.8e-05 Score=86.43 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEE-eCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVC-VSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 257 (938)
.+++|.+..++.+..++... .-.+.+.++|++|+||||+|+.+++...-...+....|.. ....+..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 47899999999888888532 2345688999999999999999887521111111000100 00011111111111
Q ss_pred HHHhcCC-----CCCcccHHHHHHHHHHhh-----cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEc-CChH
Q 035647 258 IEALEGS-----APNLGELQSLLQHIYASI-----VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTT-RNEK 326 (938)
Q Consensus 258 ~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 326 (938)
......+ .......++..+ +.+.+ .+++-++|+|++..-....++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1100000 001111222221 22222 3556689999996544456777777776655566766655 4334
Q ss_pred HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 327 VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 327 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
+...+ .....+++.+++.++..+.+...+-..+... ..+.+..|++.++|.+--+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 43332 2245789999999999888877663322211 2455677999999987533
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=6.9e-05 Score=82.20 Aligned_cols=184 Identities=10% Similarity=0.082 Sum_probs=108.3
Q ss_pred CccccchHHHHHHHHHhhcccCC----CCCceEEEEEEecCCChHHHHHHHHHccccccc------------------CC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE----EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN------------------NF 236 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~f 236 (938)
.+++|-+..++.+...+...... ...-.+.+.++|++|+|||++|+.+++...-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46889999999999998653210 001357789999999999999999876311000 01
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCC
Q 035647 237 DKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRG 315 (938)
Q Consensus 237 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 315 (938)
.-+.++.... .....+++.++.+.... ...+++-++|+|+++.-+....+.+...+.....+
T Consensus 85 pD~~~i~~~~-----------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 85 PDVRVVAPEG-----------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR 147 (394)
T ss_pred CCEEEecccc-----------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC
Confidence 1111111100 00011112222222211 11245568889999665545556677777665556
Q ss_pred CEEEEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 316 SKILVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 316 s~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
..+|++|.+. .+...+ .....+.+.+++.++..+.+.+... .. .+.+..++..++|.|.....+
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 6666666653 333332 2356899999999999988875321 11 244677999999999755443
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5.9e-05 Score=86.84 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccC--CCeEEEEEeCCCCCHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINN--FDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 256 (938)
.+++|-+..++.|..++... .-.+.+.++|..|+||||+|+.+++..--... ...... ..+..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 56899988888888888543 23567899999999999999999664110000 000000 00111111111
Q ss_pred HHHHh-----cCCCCCcccHHHHHHHHHH----hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hH
Q 035647 257 IIEAL-----EGSAPNLGELQSLLQHIYA----SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EK 326 (938)
Q Consensus 257 i~~~l-----~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 326 (938)
|...- ..+......+++..+.+.. -..++.-++|+|+++.-+...++.+...+......+++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 11000 0000011112222222211 11244558999999765556667777766654456666655543 33
Q ss_pred HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 327 VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 327 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
+...+ .....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+.-+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 33222 33578999999999999998877643332222 34456688899988754443
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.1e-05 Score=86.36 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=108.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc-------------------cCCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI-------------------NNFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 239 (938)
.+++|.+..++.+..++... .-.+.+.++|.+|+||||+|+.+++...-. +.|.-+
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 46899999999999888542 234677899999999999999998752110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
+++........ +++.++..... .-..+++-++|+|++..-+....+.+...+......+.+
T Consensus 91 ~ei~~~~~~~v------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQV------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCH------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 22222111111 11111111111 111356679999999654444566677777665556666
Q ss_pred EEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHH
Q 035647 319 LVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTI 388 (938)
Q Consensus 319 ivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 388 (938)
|++|.+. .+...+ .....+++.+++.++..+.+.+.+...+... ..+....|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~----~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF----DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666443 222121 2246889999999999988877654322211 23445668899999875 44444
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=8.6e-05 Score=73.62 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=63.2
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCC
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPP 361 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 361 (938)
+.+-++|+||+..-.....+.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 566789999996544455666777776655567777777643 222222 23468999999999999988776 1
Q ss_pred CCchhHHHHHHHHHhhcCCchhH
Q 035647 362 SECEQLVEIGQKIVGNCKGLPLA 384 (938)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~g~PLa 384 (938)
.+ .+.+..|++.++|.|..
T Consensus 169 i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC----HHHHHHHHHHcCCCccc
Confidence 11 35577899999998853
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=4.7e-05 Score=85.52 Aligned_cols=171 Identities=17% Similarity=0.099 Sum_probs=104.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
..-+.|+|..|+|||+|++++++.......-..++++ +.+++...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 4568999999999999999998852211112334555 34556677776665311 11223333333 3
Q ss_pred eeeEEeCCCCCCCc-CCc-hhhhhhhcc-CCCCCEEEEEcCChH---------HHHhcccCCeEecCCCChHHHHHHHHH
Q 035647 286 RFFLVLDDVWTDDY-SKW-EPFHNCLMH-GLRGSKILVTTRNEK---------VVRMMESTDVISIKELSEQECWWLFKR 353 (938)
Q Consensus 286 ~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~~ 353 (938)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+.... +...+...-++.+.+++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 44889999954321 112 234443332 234557888877432 222234456889999999999999998
Q ss_pred hhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 354 FAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
++-..+.. ..-..+...-|++.++|.|-.+..+...+
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 87432210 12235667779999999998776665444
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=7.3e-05 Score=86.31 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCC--eEEEEEeCCCCCHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD--KRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 256 (938)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-..... ...+-.+.. -...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHH
Confidence 57899999999999988643 2356789999999999999999987521111000 000000110 011111
Q ss_pred HHHHhcC--------CCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEc-CChH
Q 035647 257 IIEALEG--------SAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTT-RNEK 326 (938)
Q Consensus 257 i~~~l~~--------~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 326 (938)
|...-.. ......++.++.+.+... ..+++-++|+|++..-+....+.|...+..-..++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2111100 001111222222222211 22455689999996544455666777766655566766655 3333
Q ss_pred HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 327 VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 327 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
+...+ .....+++..++.++....+.+.+...+...+ .+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 33332 23568999999999999999887643332222 245566899999988655443
No 103
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.06 E-value=7.9e-06 Score=86.81 Aligned_cols=89 Identities=17% Similarity=0.110 Sum_probs=60.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCcccHHH-----HHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF--DEFRIAKAIIEALEGSAPNLGELQS-----LLQH 277 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~ 277 (938)
+-+...|+|++|+||||||++++++.... +|+..+||.+.+.. ++.++++.+...+-....+...... ..-.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999985443 89999999999887 6677777775322211111111111 1111
Q ss_pred HHHh--hcCceeeEEeCCC
Q 035647 278 IYAS--IVGKRFFLVLDDV 294 (938)
Q Consensus 278 l~~~--l~~~~~LlVlDdv 294 (938)
..++ ..+++.+|++|++
T Consensus 247 ~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHcCCCEEEEEECh
Confidence 2222 2479999999999
No 104
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.05 E-value=6.9e-05 Score=75.74 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=102.0
Q ss_pred ccc-hHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035647 182 RGR-DEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEA 260 (938)
Q Consensus 182 ~Gr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 260 (938)
+|. .+........+....+ .....+.|+|..|+|||.|.+++++.......=..+++++ .+++...+...
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHH
Confidence 464 3333444444543322 2344589999999999999999998632211112466663 45566666666
Q ss_pred hcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc-CCchh-hhhhhcc-CCCCCEEEEEcCChH---------HH
Q 035647 261 LEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY-SKWEP-FHNCLMH-GLRGSKILVTTRNEK---------VV 328 (938)
Q Consensus 261 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------~~ 328 (938)
+... .. ..+.+.++ .-=+|++||++.-.. ..|.. +...+.. ...|-+||+|++... ..
T Consensus 83 ~~~~-----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 83 LRDG-----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HHTT-----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred HHcc-----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 6541 12 22333333 345889999954321 12322 3333322 134669999996432 22
Q ss_pred HhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 329 RMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 329 ~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
..+....++++.+.+.++..+++.+.+...+-. --.++++-|++.+.+..-.+..+-
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 334456689999999999999999887543321 224555567777766655544433
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=98.05 E-value=0.00012 Score=75.05 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=93.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
...+.|+|.+|+|||.|++.+++.. ...-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 3678999999999999999998752 22224567776432 2111 0 1122223222
Q ss_pred eeeEEeCCCCCCC-cCCchh-hhhhhcc-CCCCCEEEEEcCChHHH---------HhcccCCeEecCCCChHHHHHHHHH
Q 035647 286 RFFLVLDDVWTDD-YSKWEP-FHNCLMH-GLRGSKILVTTRNEKVV---------RMMESTDVISIKELSEQECWWLFKR 353 (938)
Q Consensus 286 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~~~---------~~~~~~~~~~l~~L~~~ea~~lf~~ 353 (938)
. ++|+||+.... ...|.. +...+.. ...|..+|+|++..... ..+....++++.+++.++-.++++.
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899995321 234444 4444432 23467899998854321 1223346899999999999999986
Q ss_pred hhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 354 FAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
++...+- .. -.+...-|++.+.|..-.+..+-..|
T Consensus 178 ka~~~~~-~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-HL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6643321 11 14666778888888776555544444
No 106
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=1.6e-05 Score=85.47 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=30.5
Q ss_pred CCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCc
Q 035647 752 QAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGD 820 (938)
Q Consensus 752 ~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 820 (938)
..+.+++.|++++|.+.. +|. -.++|+.|.+++|..+..+|..- +++|++|++.+|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc
Confidence 334555555555554444 442 22345555555555444444211 23555555555544444443
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.01 E-value=5.1e-05 Score=76.49 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=112.7
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEE-EEEeCCCCCHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRM-WVCVSDNFDEFRIAKA 256 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~ 256 (938)
-.+++|.+..++.+...+.. ........+|++|.|||+-|+.+++..--..-|.+++ =.+++...... +.++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 35789999999999999865 2567899999999999999999887522233454333 22333322111 0000
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhh---c---Cce-eeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HH
Q 035647 257 IIEALEGSAPNLGELQSLLQHIYASI---V---GKR-FFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VV 328 (938)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~l~~~l---~---~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~ 328 (938)
=. .+ ...+.-.. . -++ -.||||+++.-..+.|..++..+......++-|+.+...+ +.
T Consensus 108 Ki----------k~----fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 108 KI----------KN----FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred hh----------cC----HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 00 00 01111111 0 123 4799999977667889999998887766777555555322 22
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
..+ ....-|..++|.+++...-++..+-..+...++ +..+.|++.++|.--
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~----~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD----DALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHcCCcHH
Confidence 211 224578899999999999888877555544443 334558888887654
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00012 Score=83.74 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=111.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.|...+... .-.+.+.++|+.|+||||+|+.+++...-....+. ..+..-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 46899988888888887532 13568889999999999999999875211100000 0001111111111
Q ss_pred HHhcC--------CCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHH
Q 035647 259 EALEG--------SAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVV 328 (938)
Q Consensus 259 ~~l~~--------~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~ 328 (938)
..... ......++..+.+.+.. -..+++-++|+|++..-.....+.|...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 10000 00001111111111111 12356679999999654445566677766554445566665554 3333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch-hHHHHHHhhh
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP-LAAKTIGSLL 392 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~a~~l 392 (938)
..+ .....+++.+++.++....+...+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 23468899999999999988876644332122 345566888889865 5777665544
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.01 E-value=4.8e-05 Score=83.94 Aligned_cols=180 Identities=14% Similarity=0.163 Sum_probs=99.0
Q ss_pred cCCccccchHHHHHHHHHhhcccCC-------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGE-------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD 249 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 249 (938)
...++.|+++.+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457899999999999877422100 0123556999999999999999999986 33333 22211
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCC-----------cCCchhhhhhhc---c--C
Q 035647 250 EFRIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDD-----------YSKWEPFHNCLM---H--G 312 (938)
Q Consensus 250 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-----------~~~~~~l~~~l~---~--~ 312 (938)
..+ .....+ ........+.+.. ...+.+|++|+++.-. ......+...+. . .
T Consensus 190 -~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111 111100 0111122222222 2467899999985310 001112222221 1 1
Q ss_pred CCCCEEEEEcCChHHHH-hc----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 313 LRGSKILVTTRNEKVVR-MM----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 313 ~~gs~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
..+.+||.||....... .+ .-...+.+...+.++..++|..++...... ..-.+ ..+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCH----HHHHHHcCCCC
Confidence 24667888888543221 11 124578999999999999998877443321 11223 34666666653
No 110
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.01 E-value=6.7e-05 Score=90.87 Aligned_cols=154 Identities=17% Similarity=0.221 Sum_probs=87.4
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc---cc-CCCeEEE-EEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV---IN-NFDKRMW-VCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~w-v~~~~~~~~~~~ 253 (938)
..++||+.++.++++.|... ...-+.++|.+|+||||+|+.+++.... .. -....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 46899999999999998543 3335679999999999999999885210 10 1123333 32221
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhc--CceeeEEeCCCCCCC-------cCCchh-hhhhhccCCCCCEEEEEcC
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIV--GKRFFLVLDDVWTDD-------YSKWEP-FHNCLMHGLRGSKILVTTR 323 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~iivTtr 323 (938)
+........+.+..++.+.+.+. +++.+|++|++..-. ..+... +...+.. ..-++|-||.
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATT 324 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecC
Confidence 00001111222222333333222 468999999984311 111111 2222222 2356777776
Q ss_pred ChHHHHhc-------ccCCeEecCCCChHHHHHHHHHh
Q 035647 324 NEKVVRMM-------ESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 324 ~~~~~~~~-------~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
..+..+.+ .....+.+++++.++..++++..
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 54332221 12458999999999999997543
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.9e-05 Score=87.54 Aligned_cols=195 Identities=13% Similarity=0.156 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.+..++... .-.+.+.++|..|+||||+|+.+++...-..... -...+......+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 57899999999998888532 2356778999999999999999987521000000 001111122222332
Q ss_pred HHhcCC-----C---CCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHH
Q 035647 259 EALEGS-----A---PNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVV 328 (938)
Q Consensus 259 ~~l~~~-----~---~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~ 328 (938)
.....+ . ...+++.++.+.+... ..+++-++|+|++..-..+..+.|...+......+.+|+++... .+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 0 0111122222222111 12556799999995444445566666665554566666666442 333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
..+ .....+.+..++.++....+.+.+...+...+ .+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 222 23468889999999999888877644332111 345667999999988654443
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00019 Score=82.54 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=113.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++...-....+ +-.++.. ...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 57899999999999998542 2456789999999999999999987411000000 0001100 0111111
Q ss_pred HH---------hcC-CCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEc-CChH
Q 035647 259 EA---------LEG-SAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTT-RNEK 326 (938)
Q Consensus 259 ~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 326 (938)
.. +.. .....+++.++.+.+... ..+++-++|+|++..-.....+.|...+......+.+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000 000111222222222211 12556699999997655667777777777655566655555 4444
Q ss_pred HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHHhhh
Q 035647 327 VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIGSLL 392 (938)
Q Consensus 327 ~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a~~l 392 (938)
+...+ .....+++.+++.++..+.+.+.+...+...+ .+....|++..+|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44332 33578999999999998888776643332122 2345668889999774 555554444
No 113
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.97 E-value=3.3e-05 Score=84.12 Aligned_cols=108 Identities=10% Similarity=0.110 Sum_probs=71.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.......|+.+.||.+.+..+..++.....
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4688899999999999863 34688899999999999999998754455778899999998887776653321
Q ss_pred HHhcCCCCCcccHH-HHHHHHHHhh--cCceeeEEeCCCCCCC
Q 035647 259 EALEGSAPNLGELQ-SLLQHIYASI--VGKRFFLVLDDVWTDD 298 (938)
Q Consensus 259 ~~l~~~~~~~~~~~-~~~~~l~~~l--~~~~~LlVlDdv~~~~ 298 (938)
- ......-.. ...+.+.... .++++++|+|++...+
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 0 000000000 1111112221 2468999999995443
No 114
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.96 E-value=0.00034 Score=72.84 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=107.1
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
.+.|.+|+.++..+..++-..+ ..-+..|.|+|..|.|||.+++++++.. =...+|+++.+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 4678999999999999885432 1235567999999999999999999863 1246899999999999999999
Q ss_pred HHHhc-CCCC-Cc-----ccHHHHHHHHHH--hhc--CceeeEEeCCCCCCCcCCchh-hhhhh---cc-CCCCCEEEEE
Q 035647 258 IEALE-GSAP-NL-----GELQSLLQHIYA--SIV--GKRFFLVLDDVWTDDYSKWEP-FHNCL---MH-GLRGSKILVT 321 (938)
Q Consensus 258 ~~~l~-~~~~-~~-----~~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~~-l~~~l---~~-~~~gs~iivT 321 (938)
+.... .+.+ .. ....+....+.+ ... ++.++||+||++. ..+.+. +...+ .. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985 2211 11 111222223333 112 4689999999943 223333 22222 11 1223445555
Q ss_pred cCChHHHHh---ccc--CCeEecCCCChHHHHHHHHHh
Q 035647 322 TRNEKVVRM---MES--TDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 322 tr~~~~~~~---~~~--~~~~~l~~L~~~ea~~lf~~~ 354 (938)
+........ ++. ..++..+.-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 554332222 233 346778889999999988653
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00022 Score=82.96 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=108.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccC---CC-------------eEEEE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINN---FD-------------KRMWV 242 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~-------------~~~wv 242 (938)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--... +. -++++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 46899999999999988542 24567889999999999999999864110000 00 01111
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEE
Q 035647 243 CVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVT 321 (938)
Q Consensus 243 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 321 (938)
..... ....++.++.+.+... ..+++-++|+|++..-....+..|...+-.....+.+|++
T Consensus 93 daasn------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 93 DAASN------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred ecccc------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 11000 0111122222222211 2256669999999654445666777666654445555544
Q ss_pred c-CChHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHH
Q 035647 322 T-RNEKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIG 389 (938)
Q Consensus 322 t-r~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a 389 (938)
| +...+...+ .....+++.+++.++..+.+...+...+...+ .+.+..|++.++|.+. |+..+-
T Consensus 155 Tte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 155 TTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred cCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4 444444332 33568999999999999888776533222111 2445679999999775 444333
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00021 Score=79.12 Aligned_cols=178 Identities=16% Similarity=0.208 Sum_probs=102.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc------ccCCCeE-EEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV------INNFDKR-MWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~------~~~f~~~-~wv~~~~~~~~~ 251 (938)
.+++|.+..++.+...+... .-.+.+.++|++|+||||+|+.+++...- ...|... +-+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 46899999999999998532 23568999999999999999999775211 0112111 11111111001
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcC-ChHHHH
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTR-NEKVVR 329 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~~~~ 329 (938)
.++.++.+.+.. ...+++-++|+|++..-....++.+...+......+.+|++|. ...+..
T Consensus 91 -----------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 -----------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -----------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111111111111 1124556899999954333345556555544334556665553 322222
Q ss_pred hc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 330 MM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 330 ~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
.+ .....+++.+++.++....+...+...+...+ .+.+..|++.++|.+-
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 22 23458899999999999888876654332122 3556668888998665
No 117
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.94 E-value=1.7e-05 Score=84.85 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=61.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCccc-----H-HHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN--FDEFRIAKAIIEALEGSAPNLGE-----L-QSLLQ 276 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~-----~-~~~~~ 276 (938)
.-+.++|+|.+|+|||||++.+++.... ++|+..+||.+.++ .++.++++.+...+-....+... . ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4568999999999999999999997433 37999999999876 68888888885433222111111 1 11111
Q ss_pred HHHHh-hcCceeeEEeCCCC
Q 035647 277 HIYAS-IVGKRFFLVLDDVW 295 (938)
Q Consensus 277 ~l~~~-l~~~~~LlVlDdv~ 295 (938)
..... -.+++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 12222 24899999999993
No 118
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.4e-07 Score=91.90 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=107.1
Q ss_pred hhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCC--chhhhccCccEE
Q 035647 707 KTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALP--SWVVLLNKLKKL 784 (938)
Q Consensus 707 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L 784 (938)
...-+..|++|+.|.+.++.+. +.+...+..-.+|+.|+|+++.+.++.. .-+.+++.|..|
T Consensus 202 l~~iLs~C~kLk~lSlEg~~Ld----------------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLD----------------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred HHHHHHHHHhhhhccccccccC----------------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3344556667777766666554 3455667777888888888887755322 224478888888
Q ss_pred EEeCCCCCCCCC-C-C-CCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccc
Q 035647 785 YLTHCNNCEIMP-S-L-GKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEK 861 (938)
Q Consensus 785 ~L~~~~~~~~l~-~-l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 861 (938)
+|+.|......- . + .--++|+.|+|++|...-... ....-...+|+|..|+|++|..++.-.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s------------h~~tL~~rcp~l~~LDLSD~v~l~~~~~-- 331 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS------------HLSTLVRRCPNLVHLDLSDSVMLKNDCF-- 331 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh------------HHHHHHHhCCceeeeccccccccCchHH--
Confidence 888886433221 1 1 124578888888765211000 0011124789999999999987765322
Q ss_pred cccccCCcccEEeecCCccccCCC---cCCCCCCCccEEEEcCCc
Q 035647 862 EDIAVMPQLISLELGSCSKLKSLP---VDLLRSQKLKMLEIYNCP 903 (938)
Q Consensus 862 ~~~~~l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~l~~c~ 903 (938)
..+..|+.|++|.++.|..+ .| ..+...|+|.+|++.+|-
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 22568999999999999744 33 245678999999999984
No 119
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=5.2e-07 Score=93.94 Aligned_cols=246 Identities=19% Similarity=0.202 Sum_probs=144.2
Q ss_pred hccCCCcccEEeecCCCCCccc--chhhhcccCCCeEEeCCcc-ccccC--ccCCCCCCCCcCCceEecCCCCCCCCccC
Q 035647 604 TCCELCNLQTIEIEECSNLRRL--PQRIGKLVNLRHLIFVDVY-LDYMP--KGIERLTCLRTLSEFVVSGRGKYGNKACN 678 (938)
Q Consensus 604 ~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~-l~~lp--~~i~~L~~L~~L~~~~~~~~~~~~~~~~~ 678 (938)
.-.++++++.|.+.+|..+++- -..-..+.+|++|++..|. ++..- .-...+++|++|.++.+.... .
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~-----~-- 231 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS-----G-- 231 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh-----c--
Confidence 3456777777788887766542 1223467778888777754 33221 112344555555544432211 0
Q ss_pred ccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcc
Q 035647 679 LEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIE 758 (938)
Q Consensus 679 l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 758 (938)
.+ ......+++.++.+.+.+|... .++.+...-..+..+.
T Consensus 232 -~g-------------------------v~~~~rG~~~l~~~~~kGC~e~--------------~le~l~~~~~~~~~i~ 271 (483)
T KOG4341|consen 232 -NG-------------------------VQALQRGCKELEKLSLKGCLEL--------------ELEALLKAAAYCLEIL 271 (483)
T ss_pred -Cc-------------------------chHHhccchhhhhhhhcccccc--------------cHHHHHHHhccChHhh
Confidence 00 0111222333444433332211 1122222233345566
Q ss_pred eEEEeecCCCCCCCchhh--hccCccEEEEeCCCCCCCCC--CC-CCCCCccceeeccccCceEeCcccccCCCCCCCCC
Q 035647 759 SLEMCYYKGKTALPSWVV--LLNKLKKLYLTHCNNCEIMP--SL-GKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSS 833 (938)
Q Consensus 759 ~L~L~~~~~~~~lp~~~~--~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 833 (938)
++++..|...+...-|.- .+..|+.|+.++|...+..+ .+ .+.++|+.|.+..|+.++..+-...+
T Consensus 272 ~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------- 342 (483)
T KOG4341|consen 272 KLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------- 342 (483)
T ss_pred ccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh---------
Confidence 677667755442332322 68899999999998655443 33 35799999999999976655433221
Q ss_pred CcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCC-----CcCCCCCCCccEEEEcCCcchHHh
Q 035647 834 SSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSL-----PVDLLRSQKLKMLEIYNCPILKER 908 (938)
Q Consensus 834 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~l~~~ 908 (938)
...+.|+.|++.++....+-.. ..--.++|.|+.|.++.|..+++- ..+-..+..|+.+++.+||.+.+.
T Consensus 343 ----rn~~~Le~l~~e~~~~~~d~tL-~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 343 ----RNCPHLERLDLEECGLITDGTL-ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred ----cCChhhhhhcccccceehhhhH-hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 3688999999988755443321 111238999999999999876653 444556788999999999998876
Q ss_pred hc
Q 035647 909 FK 910 (938)
Q Consensus 909 ~~ 910 (938)
-.
T Consensus 418 ~L 419 (483)
T KOG4341|consen 418 TL 419 (483)
T ss_pred HH
Confidence 44
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00034 Score=79.10 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc--ccC----------------CC-eE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV--INN----------------FD-KR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~----------------f~-~~ 239 (938)
.+++|-+..++.+...+... .-.++..++|..|+||||+|+.+++..-- ... ++ .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 56899999999999888532 24567799999999999999988764110 000 11 12
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCC
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA----SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRG 315 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 315 (938)
+.+...... .++++.+.+.. -..+++-++|+|++..-+.+..+.++..+......
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 222211111 12222222211 11245668999999665556667777777665566
Q ss_pred CEEEEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 316 SKILVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 316 s~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
+++|++|.+. .+...+ .....+++.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+.-+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 7777766653 222222 23568999999999999988876643332222 345567999999998544443
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00037 Score=78.95 Aligned_cols=184 Identities=15% Similarity=0.162 Sum_probs=107.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc--c-----------------cCCCeE
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV--I-----------------NNFDKR 239 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~-----------------~~f~~~ 239 (938)
.+++|.+..++.+..++... .-.+...++|+.|+||||+|+.++....- . +.|..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 46889999999999988542 23566788999999999999998774110 0 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 240 MWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 240 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
++++..... ..+++..+.+.+.. ...+++-++|+|++..-.....+.+...+........+
T Consensus 91 ~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222211111 11112222222211 12356779999999654444556666666554445555
Q ss_pred EEEc-CChHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 319 LVTT-RNEKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 319 ivTt-r~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
|++| +...+...+ .....+.+.+++.++....+.+.+-..+...+ .+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 5555 433333222 23458999999999999888876643332222 2445568888999776544443
No 122
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=1.8e-06 Score=88.08 Aligned_cols=197 Identities=19% Similarity=0.156 Sum_probs=122.1
Q ss_pred hhccCCCcccEEeecCCCCCcccc----hhhhcccCCCeEEeCCccccccC--------------ccCCCCCCCCcCCce
Q 035647 603 ETCCELCNLQTIEIEECSNLRRLP----QRIGKLVNLRHLIFVDVYLDYMP--------------KGIERLTCLRTLSEF 664 (938)
Q Consensus 603 ~~i~~L~~L~~L~L~~~~~l~~lp----~~i~~L~~L~~L~l~~~~l~~lp--------------~~i~~L~~L~~L~~~ 664 (938)
+.+-..++|++||||.|-.=..-+ .-+.++..|++|+|.+|.+...- ..++.-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 445667799999999997322233 23678899999999999754221 123444556655443
Q ss_pred EecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccH
Q 035647 665 VVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNH 744 (938)
Q Consensus 665 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 744 (938)
.|...+ .........+...+.|+.+.+..|.+.. ...
T Consensus 166 rNrlen-------------------------------~ga~~~A~~~~~~~~leevr~~qN~I~~------------eG~ 202 (382)
T KOG1909|consen 166 RNRLEN-------------------------------GGATALAEAFQSHPTLEEVRLSQNGIRP------------EGV 202 (382)
T ss_pred cccccc-------------------------------ccHHHHHHHHHhccccceEEEecccccC------------chh
Confidence 333221 0011222334555788888898888763 122
Q ss_pred HHHhhhcCCCCCcceEEEeecCCCCC----CCchhhhccCccEEEEeCCCCCCCCC-----C-CCCCCCccceeeccccC
Q 035647 745 EAISEALQAPPNIESLEMCYYKGKTA----LPSWVVLLNKLKKLYLTHCNNCEIMP-----S-LGKLPSLEILQIIGMRS 814 (938)
Q Consensus 745 ~~~~~~l~~~~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~L~~~~~~~~l~-----~-l~~l~~L~~L~L~~~~~ 814 (938)
..+...+..+++|+.|+|..|.++.. +-..+..+++|+.|++++|.....-. . -...|+|+.|.+.+|.
T Consensus 203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe- 281 (382)
T KOG1909|consen 203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE- 281 (382)
T ss_pred HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-
Confidence 35567788899999999999987652 22234467899999999996433211 1 2247899999998875
Q ss_pred ceEeCcccccCCCCCCCCCCcccccCCccceeeccCccc
Q 035647 815 VKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYE 853 (938)
Q Consensus 815 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 853 (938)
++.-..... .......|.|+.|.|++|..
T Consensus 282 It~da~~~l----------a~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 282 ITRDAALAL----------AACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hHHHHHHHH----------HHHHhcchhhHHhcCCcccc
Confidence 322111100 01133588999999999854
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00022 Score=85.36 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=110.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc----------------------CC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN----------------------NF 236 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----------------------~f 236 (938)
.+++|.+..++.|...+... .-.+.+.++|..|+||||+|+.+++...-.. ++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 46899999999999988642 2346789999999999999999977521000 11
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCC
Q 035647 237 DKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRG 315 (938)
Q Consensus 237 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 315 (938)
+ +++++..... ..+++.++.+.+. .-..++.-++|||+++.-....++.|+..+..-...
T Consensus 90 d-v~eidaas~~------------------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 90 D-VTEIDAASHG------------------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred c-EEEecccccC------------------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 1 1222211111 1112222222211 112355668999999766666777788887766566
Q ss_pred CEEEEEcCC-hHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhH
Q 035647 316 SKILVTTRN-EKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLA 384 (938)
Q Consensus 316 s~iivTtr~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (938)
+.+|++|.+ ..+...+ .....|++..++.++..+++.+.+-..+...+ .+....|++.++|.+..
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRD 217 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 666665543 3344333 33578999999999998888776533222111 23445689999998843
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00023 Score=82.38 Aligned_cols=202 Identities=13% Similarity=0.167 Sum_probs=110.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEE-eCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVC-VSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 257 (938)
.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++...-...++.-.|.. ....+..-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46899999999988888532 2356789999999999999999887521111111001110 00011111111111
Q ss_pred HHH-------hcC-CCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEc-CChHH
Q 035647 258 IEA-------LEG-SAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTT-RNEKV 327 (938)
Q Consensus 258 ~~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~~ 327 (938)
..- +.. .....+++.++.+.+.. -..+.+-++|+|+++.-.....+.|...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110 000 00011122222222211 123556689999996544445666777766654556655555 43444
Q ss_pred HHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHH
Q 035647 328 VRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIG 389 (938)
Q Consensus 328 ~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a 389 (938)
...+ .....+++.+++.++....+.+.+...+... ..+.+..|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3332 3467899999999998888877654322111 23456679999999654 444443
No 125
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.5e-05 Score=56.92 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=35.0
Q ss_pred CcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCc
Q 035647 609 CNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPK 650 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 650 (938)
++|++|++++|+ ++++|..+++|++|+.|++++|.++.+|+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999998 99999989999999999999998877653
No 126
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.88 E-value=6e-06 Score=64.54 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=47.2
Q ss_pred CcccEEeecCCCCCcccch-hhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEe
Q 035647 609 CNLQTIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVV 666 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~ 666 (938)
++|++|++++|+ +..+|. .+..+++|++|++++|.+..+|++ |..+++|++|++.+|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 578999999997 888885 578899999999999998888764 788888888876554
No 127
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00039 Score=78.27 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=106.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc---------------------cCCC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI---------------------NNFD 237 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~ 237 (938)
.+++|.+..++.+...+... .-.+.+.++|.+|+||||+|+.+++...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 57899999999999988532 234678899999999999999997742110 0111
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCC
Q 035647 238 KRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGS 316 (938)
Q Consensus 238 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 316 (938)
.+++....... .+++.+..+.+.. ...+++-++|+|++..-.....+.|...+......+
T Consensus 92 -~~~i~g~~~~g------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRG------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCC------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11121111111 1112221111111 112567789999995433344555666665544566
Q ss_pred EEEEEcCC-hHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHH
Q 035647 317 KILVTTRN-EKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTI 388 (938)
Q Consensus 317 ~iivTtr~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 388 (938)
.+|++|.. ..+...+ .....+++.+++.++....+...+-..+... ..+.+..|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 67666643 2232222 2356899999999999888877654322111 23456679999999764 44443
No 128
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00017 Score=81.21 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=96.2
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
-+.+.+|-++-.++|++.|.-..-...-+-.++.+||+||||||+|++.+++. ....| +-++++.-.+..++-..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE---EEEecCccccHHHhccc
Confidence 34578999999999999987443223345579999999999999999999985 33444 23444544343333111
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc----CCchhhhhhhccCC-------------CCCEEE
Q 035647 257 IIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY----SKWEPFHNCLMHGL-------------RGSKIL 319 (938)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~l~~~l~~~~-------------~gs~ii 319 (938)
=-..++ ... ...++.+++. +.+.-|++||.++.-.. +....+..-|.+.. .=|+|+
T Consensus 396 RRTYIG-----amP-GrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 RRTYIG-----AMP-GKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccc-----cCC-hHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 000011 111 1233444333 45678999999843111 11122332222211 124444
Q ss_pred E-EcCC-hH--HHHhcccCCeEecCCCChHHHHHHHHHhh
Q 035647 320 V-TTRN-EK--VVRMMESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 320 v-Ttr~-~~--~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
+ ||-+ -+ .++.++...++++.+-+.+|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 3332 22 22334557899999999999999887775
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.85 E-value=0.00014 Score=87.67 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=87.6
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc---cccCC-CeEEEE-EeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC---VINNF-DKRMWV-CVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv-~~~~~~~~~~~ 253 (938)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.+++... +...+ ...+|. +.+ .+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SL 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HH
Confidence 36899999999999988543 233467999999999999999988521 11111 333332 211 11
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCCCCC---------cCCchhhhhhhccCCCCCEEEEEcC
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVWTDD---------YSKWEPFHNCLMHGLRGSKILVTTR 323 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr 323 (938)
+.+ .....+.++....+.+.++ .++.+|++|++..-. .+..+.+...+..+ .-++|-+|.
T Consensus 250 -------~a~-~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt 319 (731)
T TIGR02639 250 -------LAG-TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTT 319 (731)
T ss_pred -------hhh-ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecC
Confidence 110 1111233344444444443 458899999995210 01112233322221 235555555
Q ss_pred ChHHHHh------c-ccCCeEecCCCChHHHHHHHHHhh
Q 035647 324 NEKVVRM------M-ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 324 ~~~~~~~------~-~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
..+..+. + .....++++.++.++..++++...
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4332211 1 123578999999999999998643
No 130
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00064 Score=76.27 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=96.5
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
-+.+.+|.++-.++|++.+.-..-.+.-+-+++..+|++|||||.+|+.+++. ....| +-++++.-.++.++-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhccc
Confidence 34568999999999999987544334456789999999999999999999985 33333 23455555555443211
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCC----cCCchhhhhhhccC-------------CCCCEEE
Q 035647 257 IIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDD----YSKWEPFHNCLMHG-------------LRGSKIL 319 (938)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~~~l~~~l~~~-------------~~gs~ii 319 (938)
--..+ .... ..+++.+++. +..+-|+.+|.|+.-. -+.-..+...|.+. -.=|+|+
T Consensus 484 RRTYV-----GAMP-GkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 RRTYV-----GAMP-GKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ceeee-----ccCC-hHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 00000 1111 1233344333 3456788999984311 01112233222211 1236666
Q ss_pred EEcCChHHH----HhcccCCeEecCCCChHHHHHHHHHhh
Q 035647 320 VTTRNEKVV----RMMESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 320 vTtr~~~~~----~~~~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
+......+. ...+....+++.+...+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 544422211 112346789999999999888877765
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00036 Score=81.36 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=109.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc---------------------cccCCC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC---------------------VINNFD 237 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~f~ 237 (938)
.+++|.+..++.+...+... .-.+.+.++|..|+||||+|+.+++... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999998532 2456789999999999999988877421 011232
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCC
Q 035647 238 KRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGS 316 (938)
Q Consensus 238 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 316 (938)
. ..++........ ++.++...+... ..+++-++|+|++..-+...++.|...+..-...+
T Consensus 92 ~-~~ld~~~~~~vd------------------~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 I-HELDAASNNSVD------------------DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred e-EEecccccCCHH------------------HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1 222222111111 111111111111 12456688999996655556777777776655566
Q ss_pred EEEEEc-CChHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 317 KILVTT-RNEKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 317 ~iivTt-r~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
.+|++| +...+...+ .....+++.+++.++....+.+.+...+...+ .+.+..|++.++|..--+
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 666554 444444433 33568999999999999888876643332112 244566899999977533
No 132
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00051 Score=68.75 Aligned_cols=179 Identities=18% Similarity=0.141 Sum_probs=102.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+|+|.+.-++++.=.+..... .++..--+.++|++|.||||||.-+++. ....+. +..+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 5799999988888777765544 4556778999999999999999999986 222221 11111101111111222
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhcc--------CCCCC-----------EEE
Q 035647 259 EALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMH--------GLRGS-----------KIL 319 (938)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs-----------~ii 319 (938)
.. |+ +.=++++|.+..-+...-+-+...+.+ .++++ -|=
T Consensus 99 t~---------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TN---------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hc---------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 21 22 233445566533221111111111111 11222 244
Q ss_pred EEcCChHHHHhccc--CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHh
Q 035647 320 VTTRNEKVVRMMES--TDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGS 390 (938)
Q Consensus 320 vTtr~~~~~~~~~~--~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~ 390 (938)
-|||.-.+...+.. ..+.+++-.+.+|-.+...+.+..-.... ..+-+.+|++...|-|--..-+-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHHHHHHH
Confidence 58886555444322 34788899999999999988774333222 245677899999999965443333
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.83 E-value=0.00052 Score=77.06 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=92.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNF--DKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
...+.|+|.+|+|||+|++++++.. .... ..++++++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 4568999999999999999999863 2222 34566643 34444555555422 1222 223332
Q ss_pred CceeeEEeCCCCCCCcC-Cc-hhhhhhhcc-CCCCCEEEEEcCChH-HH--------HhcccCCeEecCCCChHHHHHHH
Q 035647 284 GKRFFLVLDDVWTDDYS-KW-EPFHNCLMH-GLRGSKILVTTRNEK-VV--------RMMESTDVISIKELSEQECWWLF 351 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~-~~--------~~~~~~~~~~l~~L~~~ea~~lf 351 (938)
+ .-+||+||++..... .+ +.+...+.. ...+..+|+|+.... .. ..+.....+.+.+.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348999999542211 11 223333322 123556888886422 11 11223457899999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 352 KRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
.+.+....... -.+....|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLEL----PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHhcCCCHHHHH
Confidence 98875432211 24556668888887765433
No 134
>CHL00181 cbbX CbbX; Provisional
Probab=97.82 E-value=0.00088 Score=70.65 Aligned_cols=136 Identities=12% Similarity=0.094 Sum_probs=72.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
...+.++|.+|+||||+|+.+++.....+.-...-|+.++. ..+ .....+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc---c
Confidence 34588999999999999999977421111111112343331 122 22221111 01111122221 2
Q ss_pred eeeEEeCCCCCC---------CcCCchhhhhhhccCCCCCEEEEEcCChHHHHhc--------ccCCeEecCCCChHHHH
Q 035647 286 RFFLVLDDVWTD---------DYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMM--------ESTDVISIKELSEQECW 348 (938)
Q Consensus 286 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~--------~~~~~~~l~~L~~~ea~ 348 (938)
.-+|++|++..- ..+....+...+.....+.+||+++....+.... .-...+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999531 0111222334344444556777777644332211 12458999999999999
Q ss_pred HHHHHhhcC
Q 035647 349 WLFKRFAFF 357 (938)
Q Consensus 349 ~lf~~~~~~ 357 (938)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887643
No 135
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=5.1e-06 Score=93.51 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred hhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCC
Q 035647 603 ETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGR 669 (938)
Q Consensus 603 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~ 669 (938)
..++.+.+|..|++.+|. +..+...+..+++|++|++++|.+..+ .++..++.|+.|++.+|...
T Consensus 89 ~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcch
Confidence 345666777777777776 666655566677777777777776666 34666666776766655543
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.00022 Score=77.44 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=86.3
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
-.+++|.+...+.+..++... ....++.++|++|+||||+|+.+++.. .. .+..++.+. ..... .+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~~-i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRIDF-VRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHHH-HHHH
Confidence 357899999999999988532 245788889999999999999998852 11 233444433 11111 1111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccCCCCCEEEEEcCChH-HHHhc-ccC
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRMM-EST 334 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~~~ 334 (938)
+..+... ..+.+.+-++|+|++..- .......+...+.....++++|+||.... +...+ ...
T Consensus 88 l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 001134568999999543 11222334444444456778999887543 11111 223
Q ss_pred CeEecCCCChHHHHHHHHH
Q 035647 335 DVISIKELSEQECWWLFKR 353 (938)
Q Consensus 335 ~~~~l~~L~~~ea~~lf~~ 353 (938)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777788887766543
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.79 E-value=0.00037 Score=72.98 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=80.1
Q ss_pred ccccchHHHHHHHHHhhc--------ccC-CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCH
Q 035647 180 EVRGRDEEMNILKSKLLC--------EFG-EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDE 250 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~--------~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 250 (938)
.++|.+..+++|.+.... ..+ ...+...-+.++|++|+||||+|+.+++.....+......++.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478887777666543211 011 0123456788999999999999999987421111111111222221
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCC--------cCCchhhhhhhccCCCCCEEEEEc
Q 035647 251 FRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDD--------YSKWEPFHNCLMHGLRGSKILVTT 322 (938)
Q Consensus 251 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTt 322 (938)
.++. ...-+ . ........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~----~~~~g---~--~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLV----GEYIG---H--TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhh----hhhcc---c--hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 11100 0 011111222211 23589999995311 112233333333333333555665
Q ss_pred CChHHHH------hc-cc-CCeEecCCCChHHHHHHHHHhhcC
Q 035647 323 RNEKVVR------MM-ES-TDVISIKELSEQECWWLFKRFAFF 357 (938)
Q Consensus 323 r~~~~~~------~~-~~-~~~~~l~~L~~~ea~~lf~~~~~~ 357 (938)
...+... .+ .. ...+.+++++.+|-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 4432211 11 11 346899999999999999877643
No 138
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.77 E-value=0.00018 Score=87.66 Aligned_cols=154 Identities=21% Similarity=0.215 Sum_probs=88.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc---cccCC-CeEEEEEeCCCCCHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC---VINNF-DKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 254 (938)
..++||+++++++++.|... ...-+.++|.+|+|||++|+.++.... +.... ...+|.- +..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~--- 244 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIG--- 244 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHH---
Confidence 35899999999999999643 233457999999999999999987521 11111 3344421 111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCCCC-------CcCCchh-hhhhhccCCCCCEEEEEcCCh
Q 035647 255 KAIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVWTD-------DYSKWEP-FHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~~gs~iivTtr~~ 325 (938)
..+.+. ....+.++....+.+.++ .++.+|++|++..- ....... +...+.. ..-++|.+|...
T Consensus 245 ----~l~ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ 317 (821)
T CHL00095 245 ----LLLAGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLD 317 (821)
T ss_pred ----HHhccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHH
Confidence 111111 122334444444444433 56899999999420 0011122 2222222 234667666655
Q ss_pred HHHHhc-------ccCCeEecCCCChHHHHHHHHH
Q 035647 326 KVVRMM-------ESTDVISIKELSEQECWWLFKR 353 (938)
Q Consensus 326 ~~~~~~-------~~~~~~~l~~L~~~ea~~lf~~ 353 (938)
+..... .....+.+...+.++..++++.
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 543221 2234778888999998888764
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.77 E-value=0.00036 Score=69.44 Aligned_cols=123 Identities=19% Similarity=0.268 Sum_probs=70.8
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
...+++|-|++.+.+++.-..-- ......-+.+||..|+|||++++++.+....++ .--|.+..
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k---------- 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK---------- 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH----------
Confidence 34579999999998887543211 122455678899999999999999987522111 11222221
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCC-CCcCCchhhhhhhccC---CC-CCEEEEEcCChH
Q 035647 257 IIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWT-DDYSKWEPFHNCLMHG---LR-GSKILVTTRNEK 326 (938)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~-gs~iivTtr~~~ 326 (938)
.+..++..+...++. +..||+|++||+.- .....+..+.+.|..+ .+ ...|-.||..++
T Consensus 89 ---------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 89 ---------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 122333444444442 35799999999843 2234455566655432 22 233444554444
No 140
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.77 E-value=0.0002 Score=79.39 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=89.0
Q ss_pred CCccccchHHHHHHHHHhhcccC-------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFG-------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDE 250 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 250 (938)
..++.|+++.++++.+.+...-. -+-..++-|.++|++|+|||++|+.+++. .... |+.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 35789999999999887632110 01124567999999999999999999985 2222 222211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCC-----------CcCCchhhhhhhcc-----CC
Q 035647 251 FRIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTD-----------DYSKWEPFHNCLMH-----GL 313 (938)
Q Consensus 251 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~~-----~~ 313 (938)
.. +.....+ ........+.+.. ...+.+|+||+++.- +......+...+.. ..
T Consensus 199 ~~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SE----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HH----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11 1111111 0111222222222 246789999999431 00111122222211 12
Q ss_pred CCCEEEEEcCChHHHH-hc----ccCCeEecCCCChHHHHHHHHHhhcC
Q 035647 314 RGSKILVTTRNEKVVR-MM----ESTDVISIKELSEQECWWLFKRFAFF 357 (938)
Q Consensus 314 ~gs~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~~~~ 357 (938)
.+..||.||....... .+ .-...+.+++.+.++..++|+.+...
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 3567888887543221 11 11457899999999999999887643
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00091 Score=77.07 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|-+..++.+...+... .-.+.+.++|+.|+||||+|+.+++..--...... ..+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 47899999999999998532 24567899999999999999999885211100000 000100000 1110
Q ss_pred HH-------hcCCC-CCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHH
Q 035647 259 EA-------LEGSA-PNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVV 328 (938)
Q Consensus 259 ~~-------l~~~~-~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~ 328 (938)
.. +.+.. ....++.+..+.+.. ...+++-++|+|++..-+...++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 00000 011112122211111 12356668999999655445566677666654556666666543 3333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
..+ .....+++.+++.++..+.+.+.+...+... ..+.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 322 2345789999999999888887764433222 234556688899998854433
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00081 Score=78.45 Aligned_cols=196 Identities=14% Similarity=0.173 Sum_probs=109.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.+..++.... -.+.+.++|..|+||||+|+.+++...-.. .+... ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCC----CCCCcccHHHHHHh
Confidence 468999999999998886421 245788999999999999999987521110 00000 01111112222222
Q ss_pred HHhcCC-----C---CCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHH
Q 035647 259 EALEGS-----A---PNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVV 328 (938)
Q Consensus 259 ~~l~~~-----~---~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~ 328 (938)
.....+ . ...+.+.+++..... ...+++-++|+|++..-....++.|...+..-...+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111110 0 111122222222211 11245568999999654445566677766654445555555543 3333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
..+ .....+++..++.++....+.+.+...+.... .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 23567888899999988888776543222111 244667899999988654433
No 143
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=4.4e-05 Score=59.57 Aligned_cols=59 Identities=25% Similarity=0.428 Sum_probs=44.0
Q ss_pred CccceeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCc
Q 035647 841 PKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCP 903 (938)
Q Consensus 841 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 903 (938)
|+|++|++++| .+..++ +..+..+++|++|++++|. ++.+| ..+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~--~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP--PDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEEC--TTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccC--HHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 57888888887 566665 2346788888899998774 56654 567888888888888884
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00048 Score=77.41 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=93.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNF--DKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..-+.|+|.+|+|||+|++.+++. ....+ ..++|++. +++...+...+... ..+ .+.+.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 445999999999999999999986 32322 24667753 45566666655421 112 2223333
Q ss_pred CceeeEEeCCCCCCC-cCCc-hhhhhhhcc-CCCCCEEEEEcC-ChHHHH--------hcccCCeEecCCCChHHHHHHH
Q 035647 284 GKRFFLVLDDVWTDD-YSKW-EPFHNCLMH-GLRGSKILVTTR-NEKVVR--------MMESTDVISIKELSEQECWWLF 351 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtr-~~~~~~--------~~~~~~~~~l~~L~~~ea~~lf 351 (938)
...-+|++||+.... ...+ +.+...+.. ...|..||+||. .+.-.. .+.....+.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345689999995321 1111 223333322 123457888885 332211 1233558899999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 352 KRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
++.+....... -.++...|++.+.|..-.+
T Consensus 273 ~~~~~~~~~~l----~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGEL----PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCCC----CHHHHHHHHhccccCHHHH
Confidence 88875332211 2355666888877765433
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00059 Score=77.78 Aligned_cols=157 Identities=11% Similarity=0.070 Sum_probs=91.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
..+.|+|..|+|||.|++.+++.......-..+++++ ..++...+...+... .. ..+.+.++. -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~----~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KG----DSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cH----HHHHHHhhc-C
Confidence 4589999999999999999998632111123456664 344455555444321 11 122233332 3
Q ss_pred eeEEeCCCCCCCc-CCch-hhhhhhcc-CCCCCEEEEEcCChH---------HHHhcccCCeEecCCCChHHHHHHHHHh
Q 035647 287 FFLVLDDVWTDDY-SKWE-PFHNCLMH-GLRGSKILVTTRNEK---------VVRMMESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 287 ~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
=+|||||+..... ..|. .+...+.. ...|..|||||+... +...+...-++++.+.+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 4889999954322 2222 24433332 123567889888531 2223345678999999999999999988
Q ss_pred hcCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 355 AFFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
+....-.. -.+++.-|++.+.+..-
T Consensus 459 a~~r~l~l----~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 459 AVQEQLNA----PPEVLEFIASRISRNIR 483 (617)
T ss_pred HHhcCCCC----CHHHHHHHHHhccCCHH
Confidence 75433221 23555567666665543
No 146
>PRK06620 hypothetical protein; Validated
Probab=97.72 E-value=0.00033 Score=70.44 Aligned_cols=135 Identities=12% Similarity=-0.011 Sum_probs=78.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
+.+.|+|++|+|||+|++.+++... . .++.... . . + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~~~~--~------------------~---~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIKDIF--F------------------N---E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcchhh--h------------------c---h-------hHH-hcC
Confidence 6799999999999999999887522 1 2221000 0 0 0 011 123
Q ss_pred eeEEeCCCCCCCcCCchhhhhhhcc-CCCCCEEEEEcCChHH-------HHhcccCCeEecCCCChHHHHHHHHHhhcCC
Q 035647 287 FFLVLDDVWTDDYSKWEPFHNCLMH-GLRGSKILVTTRNEKV-------VRMMESTDVISIKELSEQECWWLFKRFAFFG 358 (938)
Q Consensus 287 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~-------~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~ 358 (938)
-++++||+..- +. ..+...+.. ...|..||+|++.... ...+....++++++++.++-.+++++.+...
T Consensus 87 d~lliDdi~~~--~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENW--QE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccc--hH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 57889999421 10 123322221 1346689999985432 2223445689999999999888887776422
Q ss_pred CCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 359 RPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 359 ~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
+- . --+++..-|++.+.|.--.+.
T Consensus 164 ~l-~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SV-T---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CC-C---CCHHHHHHHHHHccCCHHHHH
Confidence 11 1 124555667777776654433
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00042 Score=77.63 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=87.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
..-+.|+|.+|+|||+|++.+++... .....+++++ .+.+...+...+... .. +.++..++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 45689999999999999999998632 2223455664 334445555555321 11 22333332 3
Q ss_pred eeeEEeCCCCCCCcCCc--hhhhhhhcc-CCCCCEEEEEcCCh-H--------HHHhcccCCeEecCCCChHHHHHHHHH
Q 035647 286 RFFLVLDDVWTDDYSKW--EPFHNCLMH-GLRGSKILVTTRNE-K--------VVRMMESTDVISIKELSEQECWWLFKR 353 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtr~~-~--------~~~~~~~~~~~~l~~L~~~ea~~lf~~ 353 (938)
.-+|++||+.......+ +.+...+.. ...|..||+||... . +...+.....+++.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999954322112 223333221 12355788888642 1 112233456899999999999999988
Q ss_pred hhcCCCCCCCchhHHHHHHHHHhhcCCc
Q 035647 354 FAFFGRPPSECEQLVEIGQKIVGNCKGL 381 (938)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (938)
++....... + .++..-|++.+.+.
T Consensus 283 k~~~~~~~l-~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRI-E---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCC-C---HHHHHHHHHhcCCC
Confidence 774432211 1 23444455555543
No 148
>PLN03150 hypothetical protein; Provisional
Probab=97.69 E-value=5.7e-05 Score=89.14 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=27.3
Q ss_pred cceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeecc
Q 035647 757 IESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIG 811 (938)
Q Consensus 757 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 811 (938)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.....+| .++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~ 475 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence 4445555555544455555555555555555554443333 344555555555544
No 149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.69 E-value=0.00089 Score=76.16 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=94.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNF--DKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..-+.|+|.+|+|||+|++.+++. ....+ ..++++++. .+...+...+... .. ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHHh
Confidence 456899999999999999999986 33332 345566443 3444444444321 11 22233333
Q ss_pred CceeeEEeCCCCCCCcCC-c-hhhhhhhcc-CCCCCEEEEEcCChH--H-------HHhcccCCeEecCCCChHHHHHHH
Q 035647 284 GKRFFLVLDDVWTDDYSK-W-EPFHNCLMH-GLRGSKILVTTRNEK--V-------VRMMESTDVISIKELSEQECWWLF 351 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtr~~~--~-------~~~~~~~~~~~l~~L~~~ea~~lf 351 (938)
+.-+||+||++...... + +.+...+.. ...|..||+||.... + ...+.....+++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999995421111 1 223332222 123556888887532 1 122333468999999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 352 KRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
++.+...... --.++...|++.+.|..-.+.
T Consensus 290 ~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGID----LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCC----CCHHHHHHHHcCcCCCHHHHH
Confidence 9987542211 123556678888888776433
No 150
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.67 E-value=0.00036 Score=83.62 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=90.8
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
..+++|.++.+++|.++|............++.++|++|+||||+|+.++.. ....| +-++++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 3468999999999999887432212234568999999999999999999974 22222 223333333332221111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCC----chhhhhhhccC---------------CCCCEE
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSK----WEPFHNCLMHG---------------LRGSKI 318 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~i 318 (938)
....+ . . .....+.+... ....-+++||.+..-.... .+.+...+.+. -...-+
T Consensus 396 ~~~~g-~----~-~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIG-S----M-PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCC-C----C-CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00011 0 0 11223333322 2234578999995432221 23344333221 123344
Q ss_pred EEEcCChHHHHhc-ccCCeEecCCCChHHHHHHHHHhh
Q 035647 319 LVTTRNEKVVRMM-ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 319 ivTtr~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
|.|+....+...+ +....+++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5555543332222 334588999999999988887765
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00093 Score=77.75 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.+...+... .-.+.+.++|..|+||||+|+.+++..--....+. ..+..-.....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 57899999999999888532 23567789999999999999998875110000000 0000001111110
Q ss_pred HH-------hcC-CCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcC-ChHHH
Q 035647 259 EA-------LEG-SAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTR-NEKVV 328 (938)
Q Consensus 259 ~~-------l~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~~~ 328 (938)
.. +.. .....+++.++...+... ..+++-++|+|++..-+....+.|...+..-...+.+|++|. ...+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 000 000111222222222211 124556899999965444556667777766555666665554 44444
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch-hHHHHHHhh
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP-LAAKTIGSL 391 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~a~~ 391 (938)
..+ .....+++.+++.++....+...+...+...+ .+....|++.++|.. .|+..+-..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 332 23568899999999988888765533322122 344566888898866 455544333
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=5.5e-06 Score=93.26 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=46.6
Q ss_pred ccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCC
Q 035647 605 CCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 605 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~ 670 (938)
+..+++|++|++++|. |+++.. +..++.|+.|++++|.+..++ ++..+++|+.+++.++....
T Consensus 114 l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhhcchheeccccc-cccccc-hhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhh
Confidence 6677888888888887 777754 677778888888888877763 56667777777776665443
No 153
>PLN03150 hypothetical protein; Provisional
Probab=97.65 E-value=6.4e-05 Score=88.73 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=63.9
Q ss_pred ceEEEEecCCCcchhhhhhhhhccCcccccC-----C-CCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEe
Q 035647 567 LRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----T-EELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIF 640 (938)
Q Consensus 567 Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i-~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 640 (938)
++.|+|.++ ...+.+|..++.|++|++|+ + +.+|..++.|++|+.|+|++|.....+|..+++|++|++|++
T Consensus 420 v~~L~L~~n--~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQ--GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCC--CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 455555554 33444555555555565555 1 356777888888888888888855578888888888888888
Q ss_pred CCcccc-ccCccCCCC-CCCCcCCceEe
Q 035647 641 VDVYLD-YMPKGIERL-TCLRTLSEFVV 666 (938)
Q Consensus 641 ~~~~l~-~lp~~i~~L-~~L~~L~~~~~ 666 (938)
++|.+. .+|..++.+ .++..+++..|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCC
Confidence 888854 677776653 24444444433
No 154
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.003 Score=62.67 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=108.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHHhh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNL--GELQSLLQHIYASI 282 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l 282 (938)
+.+++.|+|.-|+|||++++.+... ..+.-..++. --....+...+...++..+..+.... ...+.....+....
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~d~~~~v~-i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNEDQVAVVV-IDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCCCceEEEE-ecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 5679999999999999999954432 1111112222 22344566778888888887632211 12233334444444
Q ss_pred c-Cce-eeEEeCCCCCCCcCCchhhhhhhccCCCC---CEEEEEcCCh-------HHHHhccc-CCe-EecCCCChHHHH
Q 035647 283 V-GKR-FFLVLDDVWTDDYSKWEPFHNCLMHGLRG---SKILVTTRNE-------KVVRMMES-TDV-ISIKELSEQECW 348 (938)
Q Consensus 283 ~-~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~iivTtr~~-------~~~~~~~~-~~~-~~l~~L~~~ea~ 348 (938)
+ +++ ..+++|+......+..+.++-.......+ -+|+.....+ .+....+. ... |++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 3 666 89999999765555555555433221112 2355544422 11111111 223 999999999999
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 349 WLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 349 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
.+++.+..+...+.+ --..+....|....+|.|.+|..++..-
T Consensus 207 ~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 207 LYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred HHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 999887755532211 1122344568899999999999887543
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.64 E-value=0.00018 Score=66.68 Aligned_cols=21 Identities=43% Similarity=0.464 Sum_probs=19.7
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 035647 209 ISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~ 229 (938)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999996
No 156
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.63 E-value=0.00064 Score=71.77 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=70.8
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCcee
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRF 287 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 287 (938)
-+.++|.+|+|||++|+.+++.....+.....-|+.++. .++ ...+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999988776422111111112333332 122 22222111 11111122221 336
Q ss_pred eEEeCCCCCC----C-----cCCchhhhhhhccCCCCCEEEEEcCChHHHHhcc--------cCCeEecCCCChHHHHHH
Q 035647 288 FLVLDDVWTD----D-----YSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMME--------STDVISIKELSEQECWWL 350 (938)
Q Consensus 288 LlVlDdv~~~----~-----~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~~--------~~~~~~l~~L~~~ea~~l 350 (938)
+|++|++..- . .+.++.+...+.....+.+||+++.......... -...+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999521 0 1122334444444445667777765433222111 135789999999999999
Q ss_pred HHHhhc
Q 035647 351 FKRFAF 356 (938)
Q Consensus 351 f~~~~~ 356 (938)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 157
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.63 E-value=0.0021 Score=78.11 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=85.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..+++|.+++............++.++|++|+|||++|+.+++. ....| +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC--
Confidence 458899999999988765321111223458999999999999999999986 32333 22223332222221100
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcC----Cchhhhhhhcc--------C-------CCCCEEE
Q 035647 259 EALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYS----KWEPFHNCLMH--------G-------LRGSKIL 319 (938)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~--------~-------~~gs~ii 319 (938)
...... .......+.+... ...+-+|+||+++.-... ....+...+.. . ..+.-+|
T Consensus 393 ---~~~~~g-~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVG-AMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeC-CCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 000000 0011222333332 223348899999542211 11223222211 0 0123444
Q ss_pred EEcCChH-HHHh-cccCCeEecCCCChHHHHHHHHHhh
Q 035647 320 VTTRNEK-VVRM-MESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 320 vTtr~~~-~~~~-~~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
.||.... +... ......+++.+++.++-.++++.+.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5555432 1111 1234588999999999888887654
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.0016 Score=75.32 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=106.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--...-+ ...+..-.....+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 57999999999999988643 2456788899999999999999876411000000 00111111111111
Q ss_pred HHhcCC-----C---CCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEc-CChHHH
Q 035647 259 EALEGS-----A---PNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTT-RNEKVV 328 (938)
Q Consensus 259 ~~l~~~-----~---~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~~~ 328 (938)
.....+ . ...+++.++...+.. ...++.-++|+|++..-....++.|...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 0 011112222222221 123566789999996544455666766665544454555444 433333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
..+ .....+++.+++.++....+...+...+...+ .+.+..|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 322 23567889999999998888776643332122 344566888888877543
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.62 E-value=0.00044 Score=84.62 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=85.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc----CCCeEEE-EEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN----NFDKRMW-VCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~ 253 (938)
..++||+.++.++++.|... ...-+.++|.+|+|||++|+.++....-.. .....+| ++++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH
Confidence 35899999999999999543 334556899999999999999887521110 0122333 2211 11
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhc--CceeeEEeCCCCCCC-----cC--CchhhhhhhccCCCCCEEEEEcCC
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIV--GKRFFLVLDDVWTDD-----YS--KWEPFHNCLMHGLRGSKILVTTRN 324 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~--~~~~l~~~l~~~~~gs~iivTtr~ 324 (938)
+.+ .....+.+..+..+.+.+. +++.+|++|++..-. .. +...+..+.... ..-++|-+|..
T Consensus 241 -------~a~-~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 241 -------IAG-AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred -------hhc-chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 111 0111223333333433332 468999999995311 00 011111111111 13356656655
Q ss_pred hHHHHhc-------ccCCeEecCCCChHHHHHHHHHh
Q 035647 325 EKVVRMM-------ESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 325 ~~~~~~~-------~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
.+....+ .....+.++..+.++..++++..
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 4432211 12346889999999999988764
No 160
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=0.00021 Score=74.48 Aligned_cols=104 Identities=24% Similarity=0.269 Sum_probs=61.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
..+.++|.+|+|||.||..+++.. ...-..+++++ ..+++..+........ ..... .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 458999999999999999999973 22334566665 3445555555443221 11111 2233334333
Q ss_pred eeEEeCCCCCCCcCCchh--hhhhhcc-CCCCCEEEEEcCCh
Q 035647 287 FFLVLDDVWTDDYSKWEP--FHNCLMH-GLRGSKILVTTRNE 325 (938)
Q Consensus 287 ~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~~ 325 (938)
||||||+..+....|.. +...+.. ...+..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445544 3333332 23566799999853
No 161
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.0002 Score=77.27 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=34.0
Q ss_pred hhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCc
Q 035647 775 VVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGD 820 (938)
Q Consensus 775 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 820 (938)
+..+.+++.|++++| .+..+|.+ +++|+.|.+.+|..++.+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVL--PNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCC--CCCCcEEEccCCCCcccCCc
Confidence 335789999999999 56666633 55799999999998877764
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0012 Score=70.80 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=65.9
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCC
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPP 361 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 361 (938)
+++-++|+|+++.-+....+.+...+..-..++.+|+||.+.. +...+ .....+.+.+++.+++.+.+.... ...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 4455667899976666677778887776556777777777653 33332 335689999999999999887653 111
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 362 SECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
..+.+..++..++|.|..+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233456788999999765544
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.54 E-value=0.00063 Score=82.91 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=84.4
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc---C-CCe-EEEEEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN---N-FDK-RMWVCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-f~~-~~wv~~~~~~~~~~~ 253 (938)
..++||+.++.++++.|... ...-+.++|.+|+|||++|+.++....... . ... +++++++. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 35999999999999999543 334567999999999999999988521100 0 122 23333222 1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhh--cCceeeEEeCCCCCCC-------cCCchh-hhhhhccCCCCCEEEEEcC
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASI--VGKRFFLVLDDVWTDD-------YSKWEP-FHNCLMHGLRGSKILVTTR 323 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~iivTtr 323 (938)
+.+ .....+.+.....+.+.+ .+++.+|++|++..-. ..+... +...+.. ..-++|-+|.
T Consensus 246 -------~ag-~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt 315 (857)
T PRK10865 246 -------VAG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 315 (857)
T ss_pred -------hhc-cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCC
Confidence 000 011122222233332222 2568999999994311 001112 2222211 2346666666
Q ss_pred ChHHHHhc-------ccCCeEecCCCChHHHHHHHHHhh
Q 035647 324 NEKVVRMM-------ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 324 ~~~~~~~~-------~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
..+....+ .....+.+..-+.++..++++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55532211 112356677778899988886543
No 164
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0021 Score=68.60 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=112.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc-------------ccCCCeEEEEEeC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV-------------INNFDKRMWVCVS 245 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~ 245 (938)
.+++|.+..++.+...+... .-.+...++|..|+||+++|..+++..-- ...+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 46899999999999998543 23579999999999999999888664100 1122233454321
Q ss_pred CCCCHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHhh-----cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEE
Q 035647 246 DNFDEFRIAKAIIEALE--GSAPNLGELQSLLQHIYASI-----VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKI 318 (938)
Q Consensus 246 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 318 (938)
...+-..+-..-++..+ ......-.+++ ++.+.+.+ .+++-++|+|+++.-+....+.+...+-.-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000000111111 01111111222 22333333 3567799999996555556677777776544 4455
Q ss_pred EEEcC-ChHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 319 LVTTR-NEKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 319 ivTtr-~~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
|++|. ...+...+ .....+.+.+++.++..+.+.+....... . .....++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---N----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---h----hHHHHHHHHcCCCHHHHHHH
Confidence 55554 33444433 33679999999999999999876421110 1 11346889999999765543
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=0.00041 Score=65.10 Aligned_cols=87 Identities=21% Similarity=0.144 Sum_probs=47.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc-
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK- 285 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 285 (938)
+.+.|+|.+|+||||+++.++.... .....++++..+........... ........... ........+....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASG-SGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCC-CHHHHHHHHHHHHHhcC
Confidence 4789999999999999999998622 22234666665543333222211 11111111111 2222233334444433
Q ss_pred eeeEEeCCCCCC
Q 035647 286 RFFLVLDDVWTD 297 (938)
Q Consensus 286 ~~LlVlDdv~~~ 297 (938)
..++++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999653
No 166
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.00086 Score=67.73 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=75.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEe----CCC-----CC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCV----SDN-----FD 249 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~-----~~ 249 (938)
..+.+|......+..++.. ..++.+.|.+|+|||+||.+++.+.-..+.|+.++-..- ++. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4577888898999888842 249999999999999999998875322344554443321 110 01
Q ss_pred HH----HHHHHHHHHhcCCCCCcccHHHHHH--------HHHHhhcCcee---eEEeCCCCCCCcCCchhhhhhhccCCC
Q 035647 250 EF----RIAKAIIEALEGSAPNLGELQSLLQ--------HIYASIVGKRF---FLVLDDVWTDDYSKWEPFHNCLMHGLR 314 (938)
Q Consensus 250 ~~----~~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~~~~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 314 (938)
.. -.+..+...+..-.. ....+.... .-..++++..+ ++|+|++.+-+. ..+...+-..+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 11 112222222221000 011111110 01135566654 999999976544 334444445567
Q ss_pred CCEEEEEcCCh
Q 035647 315 GSKILVTTRNE 325 (938)
Q Consensus 315 gs~iivTtr~~ 325 (938)
+|++|+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999988754
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0026 Score=74.11 Aligned_cols=133 Identities=17% Similarity=0.278 Sum_probs=82.9
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCC---CeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF---DKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 252 (938)
.+++|-+..++.+.+.+..... +.+....+...+|+.|||||.||++++.. -| +..+-++.|+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 4689999999999998864432 12345678888999999999999999874 33 3344444443211
Q ss_pred HHHHHHHHhcCCCCC--cccHHHHHHHHHHhhcCcee-eEEeCCCCCCCcCCchhhhhhhccCC----C-------CCEE
Q 035647 253 IAKAIIEALEGSAPN--LGELQSLLQHIYASIVGKRF-FLVLDDVWTDDYSKWEPFHNCLMHGL----R-------GSKI 318 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~----~-------gs~i 318 (938)
-..+.+-++.+... -.+... |-+..+.++| +|.||+++...++.++-+...|.++. . .+-|
T Consensus 563 -kHsVSrLIGaPPGYVGyeeGG~----LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 563 -KHSVSRLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred -HHHHHHHhCCCCCCceeccccc----hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 12233334433221 122222 3344456777 99999998777777777777666542 2 3456
Q ss_pred EEEcCC
Q 035647 319 LVTTRN 324 (938)
Q Consensus 319 ivTtr~ 324 (938)
|+||.-
T Consensus 638 ImTSN~ 643 (786)
T COG0542 638 IMTSNA 643 (786)
T ss_pred EEeccc
Confidence 777763
No 168
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.49 E-value=0.0019 Score=72.72 Aligned_cols=167 Identities=14% Similarity=0.203 Sum_probs=89.7
Q ss_pred CccccchHHHHHHHHHhhcccC-------CCCCceEEEEEEecCCChHHHHHHHHHcccccc---cCCCeEEEEEeCCCC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG-------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI---NNFDKRMWVCVSDNF 248 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~ 248 (938)
.++.|.+..++++.+.+.-.-- .+-...+-+.++|++|+|||++|+.+++..... .......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999998887642100 011235679999999999999999999862211 01123444444321
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCC-------cCCc-----hhhhhhhcc--CC
Q 035647 249 DEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDD-------YSKW-----EPFHNCLMH--GL 313 (938)
Q Consensus 249 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~--~~ 313 (938)
. ++....+. ....+..+++..+... .+++++|+||+++.-- .... ..+...+.. ..
T Consensus 261 ---e----Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---E----LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---h----hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 1 11111000 0111122223322222 2578999999995310 0111 122222221 11
Q ss_pred CCCEEEEEcCChHHHH-hc----ccCCeEecCCCChHHHHHHHHHhh
Q 035647 314 RGSKILVTTRNEKVVR-MM----ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 314 ~gs~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
.+..||.||....... .+ .-+..++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445666665543222 11 114568999999999999999886
No 169
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0022 Score=69.57 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=85.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCC--eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD--KRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI 282 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 282 (938)
....+.|+|..|.|||.|++++.+. ...... .++++ +.+.....++..+..+ ..+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~------~se~f~~~~v~a~~~~---------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL------TSEDFTNDFVKALRDN---------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec------cHHHHHHHHHHHHHhh---------hHHHHHHhh
Confidence 5778999999999999999999996 334443 34444 3444555555554421 223344443
Q ss_pred cCceeeEEeCCCCCCC-cCCchh-hhhhhcc-CCCCCEEEEEcCChH---------HHHhcccCCeEecCCCChHHHHHH
Q 035647 283 VGKRFFLVLDDVWTDD-YSKWEP-FHNCLMH-GLRGSKILVTTRNEK---------VVRMMESTDVISIKELSEQECWWL 350 (938)
Q Consensus 283 ~~~~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~ea~~l 350 (938)
.-=++++||++.-. .+.|.. +...+.. ...|-.||+|++... +...+...-++++.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33489999996421 112222 4443332 123448999997432 333345567999999999999999
Q ss_pred HHHhhcCCC
Q 035647 351 FKRFAFFGR 359 (938)
Q Consensus 351 f~~~~~~~~ 359 (938)
+.+.+....
T Consensus 253 L~kka~~~~ 261 (408)
T COG0593 253 LRKKAEDRG 261 (408)
T ss_pred HHHHHHhcC
Confidence 988765444
No 170
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=1.7e-06 Score=96.01 Aligned_cols=111 Identities=26% Similarity=0.238 Sum_probs=67.3
Q ss_pred HhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCC--CCCCccceeeccccCceEeCccccc
Q 035647 747 ISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLG--KLPSLEILQIIGMRSVKRVGDEFWG 824 (938)
Q Consensus 747 ~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~--~l~~L~~L~L~~~~~l~~~~~~~~~ 824 (938)
...+++-++.|+.|+|++|+++. .. .+..+++|++|+|+.|. +..+|.++ .+ .|..|.|++|. ++.+-
T Consensus 179 mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~----- 248 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNA-LTTLR----- 248 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccH-HHhhh-----
Confidence 34556667778888888888776 33 66778888888888874 34445433 23 27777777654 33221
Q ss_pred CCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCcc
Q 035647 825 IENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSK 880 (938)
Q Consensus 825 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 880 (938)
.+..+.+|+.|++++|-....-...| +..+..|+.|+|.+||.
T Consensus 249 -----------gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 249 -----------GIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -----------hHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence 13467777777777763222111112 33667777777777764
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.0003 Score=83.55 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=87.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc---ccC-CCeEEEEEeCCCCCHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV---INN-FDKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~-f~~~~wv~~~~~~~~~~~~ 254 (938)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.+++.... ... .+..+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 35899999999999998653 2233468999999999999999875211 111 13444421 11111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCC------C--cCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 255 KAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTD------D--YSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~------~--~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
+.+ .....+.+.....+.+.+ +.++.+|++|++..- . ..+...+..++... ..-+||-+|...
T Consensus 254 ------laG-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 ------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred ------hcc-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 111 111223333344444433 345789999999431 0 01111122222222 234556565544
Q ss_pred HHHHhc-------ccCCeEecCCCChHHHHHHHHHh
Q 035647 326 KVVRMM-------ESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 326 ~~~~~~-------~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
+....+ ..-..+.++..+.+++.++++..
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 432211 12358999999999999998764
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.00074 Score=78.16 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+++|.+..++++..++....- .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999865322 1223468999999999999999999975
No 173
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.34 E-value=0.0064 Score=68.66 Aligned_cols=208 Identities=14% Similarity=0.096 Sum_probs=128.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc------cccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC------VINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~f~~~~wv~~~~~~~~~~ 252 (938)
..+-+||.|..+|-..+...=+ .+.....+.|.|.+|+|||..+..|.+.-. --..|+ .+.|+.-.-.+..+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 3466899999999998865433 133456999999999999999999988421 122343 35566666667899
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhc-----CceeeEEeCCCCCCCcCCchhhhhhhcc-CCCCCEEEEEcCCh-
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIV-----GKRFFLVLDDVWTDDYSKWEPFHNCLMH-GLRGSKILVTTRNE- 325 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~- 325 (938)
++..|.+++.+.. .......+.+..++. .+.+++++|+++.--...-+-+...|.+ ..++||++|.+=..
T Consensus 474 ~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 9999999998643 223344455555554 4578999999832100111224444444 45788877754321
Q ss_pred -HHH-Hhcc-------cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 326 -KVV-RMME-------STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 326 -~~~-~~~~-------~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
... +.+. +...+...|-+.++-.++...+..+.. .-.....+-++++++...|..-.|+.+.-+..
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111 1111 134677888888888888877764432 22334455556666666666656555544443
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.34 E-value=0.0028 Score=70.21 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=76.7
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCcee
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRF 287 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 287 (938)
++.|+|+-++||||+++.+... .... .+++...+......-+ .+....+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-----------------~d~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-----------------LDLLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-----------------HHHHHHHHHhhccCCc
Confidence 9999999999999999777664 2122 5666544422111111 1111111111122778
Q ss_pred eEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHH-----hc-ccCCeEecCCCChHHHHHHH
Q 035647 288 FLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR-----MM-ESTDVISIKELSEQECWWLF 351 (938)
Q Consensus 288 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~-----~~-~~~~~~~l~~L~~~ea~~lf 351 (938)
.|+||.|. ....|......+.+.++. +|++|+-+..... .. +....+++-||+..|...+-
T Consensus 97 yifLDEIq--~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQ--NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEeccc--CchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 99999995 457798877778776655 8999888754332 22 33668999999999987654
No 175
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.25 E-value=0.0013 Score=73.10 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=87.6
Q ss_pred CccccchHHHHHHHHHhhcccC-------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG-------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|.+..+++|.+.+.-.-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4578999999998887642100 01124567889999999999999999985 33333 2222111
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCCC------cCC-----chhhhhhhc---c--CCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTDD------YSK-----WEPFHNCLM---H--GLR 314 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~------~~~-----~~~l~~~l~---~--~~~ 314 (938)
+ .....+ .....+..+. ......+.+|+||+++.-. ... ...+...+. . ...
T Consensus 253 -L----~~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 -L----IQKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -h----hhhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1 111110 0111122222 2223568899999983210 000 011222221 1 123
Q ss_pred CCEEEEEcCChHHHHh-c----ccCCeEecCCCChHHHHHHHHHhhc
Q 035647 315 GSKILVTTRNEKVVRM-M----ESTDVISIKELSEQECWWLFKRFAF 356 (938)
Q Consensus 315 gs~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~~~ 356 (938)
+.+||+||........ + .-...+.+...+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888886543332 1 1245789999999999999987753
No 176
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.00067 Score=69.39 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=59.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
...+.++|.+|+|||+||..+++.. ......++++++. ++...+-...... ..... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 3578999999999999999999963 3334446776543 4444444433211 11111 22222 35
Q ss_pred eeeEEeCCCCCCCcCCchh--hhhhhccC-CCCCEEEEEcCC
Q 035647 286 RFFLVLDDVWTDDYSKWEP--FHNCLMHG-LRGSKILVTTRN 324 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 324 (938)
-=|||+||+.......|.. +...+... .+.--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6699999995544444543 33333321 223457888874
No 177
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.21 E-value=0.0088 Score=72.29 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=77.4
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|.+..++.+...+..... +.+....++.++|++|+|||+||+.++... +...+.++.++..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 4588999999999888764211 011234578999999999999999998852 2345666655432211
Q ss_pred HHHHHhcCCCC--CcccHHHHHHHHHHhhcCc-eeeEEeCCCCCCCcCCchhhhhhhccC----C-------CCCEEEEE
Q 035647 256 AIIEALEGSAP--NLGELQSLLQHIYASIVGK-RFFLVLDDVWTDDYSKWEPFHNCLMHG----L-------RGSKILVT 321 (938)
Q Consensus 256 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivT 321 (938)
.+...++.... .......+ .+.++.+ .-+++||+++.-+++.++.+...+..+ . ..+.||+|
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred cHHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 12222322211 11112222 2333333 459999999776666666666655443 1 23457777
Q ss_pred cCC
Q 035647 322 TRN 324 (938)
Q Consensus 322 tr~ 324 (938)
|..
T Consensus 601 sn~ 603 (731)
T TIGR02639 601 SNA 603 (731)
T ss_pred CCc
Confidence 753
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.006 Score=66.01 Aligned_cols=163 Identities=9% Similarity=0.073 Sum_probs=90.0
Q ss_pred cccc-chHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 180 EVRG-RDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 180 ~~~G-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.++| -+..++.+...+... .-.+...++|+.|+||||+|+.+++..--....... .++.. ...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 3566 566677777777432 246788999999999999999887641100100000 00000 0000000
Q ss_pred HHhcC------CCCCcccHHHHHHHHHHh----hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-H
Q 035647 259 EALEG------SAPNLGELQSLLQHIYAS----IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-V 327 (938)
Q Consensus 259 ~~l~~------~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~ 327 (938)
..-.. .....-.+++..+.+... ..+.+-++|+|++..-+....+.+...+..-..++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000011122222222111 235566899999966555566678887776666777777776543 3
Q ss_pred HHhc-ccCCeEecCCCChHHHHHHHHHh
Q 035647 328 VRMM-ESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 328 ~~~~-~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
...+ .....+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3333 33568999999999998888653
No 179
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.21 E-value=0.021 Score=61.83 Aligned_cols=211 Identities=14% Similarity=0.130 Sum_probs=123.9
Q ss_pred chHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHH-HHHHcccccccCCCeEEEEEeCCCC---CHHHHHHHHHH
Q 035647 184 RDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLA-QFVYNDSCVINNFDKRMWVCVSDNF---DEFRIAKAIIE 259 (938)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~i~~ 259 (938)
|.+.+++|..||... .-..|.|.|+-|+||+.|+ .++.++. ..++.+++.+-. +...+...++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHH
Confidence 677899999999654 4469999999999999999 7777651 226666654322 22333334443
Q ss_pred Hhc-----------------------CCCCC-cccHHH--------HHHHHHH-------------------hhc---Cc
Q 035647 260 ALE-----------------------GSAPN-LGELQS--------LLQHIYA-------------------SIV---GK 285 (938)
Q Consensus 260 ~l~-----------------------~~~~~-~~~~~~--------~~~~l~~-------------------~l~---~~ 285 (938)
+++ +.... ..+.+. ....|++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 332 11111 111111 1111221 111 23
Q ss_pred eeeEEeCCCCCCCcC---Cchhhhhh--hccCCCCCEEEEEcCChHHHH----hcc--cCCeEecCCCChHHHHHHHHHh
Q 035647 286 RFFLVLDDVWTDDYS---KWEPFHNC--LMHGLRGSKILVTTRNEKVVR----MME--STDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~---~~~~l~~~--l~~~~~gs~iivTtr~~~~~~----~~~--~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
+-+||+||.-..... .|+.+... .....+=.+||++|-+....+ .+. ....+.|...+.+.|..+...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 679999999543211 12222211 111234568999998755443 332 2568899999999999999988
Q ss_pred hcCCCCC------------CCc----hhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHH-HHHHHh
Q 035647 355 AFFGRPP------------SEC----EQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREE-WESVLN 406 (938)
Q Consensus 355 ~~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~-w~~~l~ 406 (938)
....... ... ....+-....++.+||=-.-+..+++.++...++++ ...+.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7543110 000 123334456889999999999999999998866543 334443
No 180
>PRK08181 transposase; Validated
Probab=97.20 E-value=0.0011 Score=68.75 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=57.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
.-+.++|.+|+|||.||..+++... .....++|++ ..+++..+..... ......... .+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~----~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIA----KL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHH----HH-hcC
Confidence 3599999999999999999987522 2233456664 3445555543321 112222222 22 234
Q ss_pred eeEEeCCCCCCCcCCch--hhhhhhccCCCCCEEEEEcCCh
Q 035647 287 FFLVLDDVWTDDYSKWE--PFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 287 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 325 (938)
=|||+||+.......+. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999644333332 2444443321224689998854
No 181
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.18 E-value=0.0028 Score=77.31 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=76.5
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|.+..++.+...+..... +.+....++.++|++|+|||++|+.+++. ....-...+.++++.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-----
Confidence 4689999999999988864321 01123357899999999999999999874 2112223455554432111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhcCc-eeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEcC
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASIVGK-RFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTTR 323 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 323 (938)
.....+-+..+.....+. ...+.+.++.+ .-+|+||++..-+...+..+...+..+. ..+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222111111000 11122233222 3599999997656666666766654431 2234788887
Q ss_pred C
Q 035647 324 N 324 (938)
Q Consensus 324 ~ 324 (938)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.012 Score=64.09 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=88.4
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
.....+.+.|++|+|||+||.+++.. ..|..+--++..+..... +...............+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhhc
Confidence 45778899999999999999999975 677766555432211110 11111122233334445
Q ss_pred CceeeEEeCCCCCCCcCCchhhhh------------hh---ccCCCCCEEEEEcCChHHHHhccc----CCeEecCCCCh
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHN------------CL---MHGLRGSKILVTTRNEKVVRMMES----TDVISIKELSE 344 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~------------~l---~~~~~gs~iivTtr~~~~~~~~~~----~~~~~l~~L~~ 344 (938)
..--.||+||++. .-+|..+.. .+ |+.++.--|+-||....+...|+- ...+.++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 6667999999943 233433221 12 222223335557777788887754 45889999987
Q ss_pred -HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhc
Q 035647 345 -QECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNC 378 (938)
Q Consensus 345 -~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (938)
++..+.+...- .-.+.....++++...+|
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 67777776542 112344556666677666
No 183
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.00068 Score=68.17 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=31.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEe
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCV 244 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 244 (938)
.-.++|+|..|+||||++..+... ....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 346899999999999999999986 6678888877754
No 184
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.15 E-value=0.017 Score=63.01 Aligned_cols=168 Identities=12% Similarity=0.089 Sum_probs=95.1
Q ss_pred chHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc-cCCCeEEEEEeCCCCC----HHHHHHHHH
Q 035647 184 RDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI-NNFDKRMWVCVSDNFD----EFRIAKAII 258 (938)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~----~~~~~~~i~ 258 (938)
|+...+.+.+.+...+ .....+|+|.|.=|+|||++.+++.+..+.. ..-..++|++...... ...++.+|.
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~ 77 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELF 77 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHH
Confidence 3455667777776432 2478899999999999999999998763322 1112344444433322 334444444
Q ss_pred HHhcCCCC------------------------------------------------------------------CcccHH
Q 035647 259 EALEGSAP------------------------------------------------------------------NLGELQ 272 (938)
Q Consensus 259 ~~l~~~~~------------------------------------------------------------------~~~~~~ 272 (938)
.++..... ...+.+
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T PF07693_consen 78 DQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVE 157 (325)
T ss_pred HHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHH
Confidence 44321100 000111
Q ss_pred HHHHHHHHhhc--CceeeEEeCCCCCCCcCCchhhhhhhcc--CCCCCEEEEEcCChHHHHhccc---------------
Q 035647 273 SLLQHIYASIV--GKRFFLVLDDVWTDDYSKWEPFHNCLMH--GLRGSKILVTTRNEKVVRMMES--------------- 333 (938)
Q Consensus 273 ~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~~~~~~~~--------------- 333 (938)
+....+.+.+. ++|.++|+||+++-+++....+...+.. ..++..+|+..-...+...+..
T Consensus 158 ~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 158 ELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred HHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 12333444443 5799999999977655544444444332 2367778877776655543321
Q ss_pred ----CCeEecCCCChHHHHHHHHHh
Q 035647 334 ----TDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 334 ----~~~~~l~~L~~~ea~~lf~~~ 354 (938)
...+.+++.+..+-..+|...
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 225777777777666666554
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0011 Score=70.46 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=65.9
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCC
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPP 361 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 361 (938)
+++-++|+|+++.-+...-+.+...+..-..++.+|++|... .+...+ .....+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 566799999996655556666777777666677777777653 344333 235688999999999998886531
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 362 SECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
.+ .+.+..++..++|.|+.+..++
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1225668999999998665443
No 186
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.15 E-value=0.0043 Score=76.12 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|.+..++.+...+..... +.+....++.++|++|+|||++|+.+... ....-...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 4689999999999999875321 01123567889999999999999999974 212223344555554322111
Q ss_pred HHHHHhcCCCC--CcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEc
Q 035647 256 AIIEALEGSAP--NLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTT 322 (938)
Q Consensus 256 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 322 (938)
....++.... .......+...++. ....+|+||++..-+++.+..+...+..+. ..+-||+||
T Consensus 640 -~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 640 -VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred -HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 1111222111 11111122222221 233499999998766677777777664431 334588888
Q ss_pred CC
Q 035647 323 RN 324 (938)
Q Consensus 323 r~ 324 (938)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 75
No 187
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00055 Score=68.64 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=51.6
Q ss_pred ccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCC--chhhhccCccEEEEeCCCC
Q 035647 714 KKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALP--SWVVLLNKLKKLYLTHCNN 791 (938)
Q Consensus 714 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~ 791 (938)
++++..+-+.-|++.. ..-.....+++.+..|+|+.+++.. .. +.+..+++|+.|.+++++.
T Consensus 198 Fpnv~sv~v~e~PlK~---------------~s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKT---------------ESSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred cccchheeeecCcccc---------------hhhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhheeeccCCcc
Confidence 3566667776665542 1223345667777788888887543 11 1233789999999999987
Q ss_pred CCCCCC-------CCCCCCccceeec
Q 035647 792 CEIMPS-------LGKLPSLEILQII 810 (938)
Q Consensus 792 ~~~l~~-------l~~l~~L~~L~L~ 810 (938)
.+.+.. ++.+++++.|+=+
T Consensus 262 ~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 262 SDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccccCCcceEEEEeeccceEEecCc
Confidence 766542 5567777777544
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.12 E-value=0.011 Score=61.75 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=29.0
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHH
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 254 (938)
-|.+.|.+|+|||++|+.+++. .. ...+.+++....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hC---CCEEEEeCCccCCHHHHh
Confidence 4679999999999999999863 21 234556666555554443
No 189
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0025 Score=67.88 Aligned_cols=167 Identities=9% Similarity=0.036 Sum_probs=93.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCC--------eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD--------KRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQ 276 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 276 (938)
-.+...+.|+.|+||+++|+.+++..-=..... ..-++..+.+++...+.. ..+.....+.+.++.+
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-----~~~~~I~id~iR~l~~ 97 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP-----IDNKDIGVDQVREINE 97 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc-----ccCCCCCHHHHHHHHH
Confidence 457888999999999999999876410000000 000111111111110000 0000011112222222
Q ss_pred HHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHH
Q 035647 277 HIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKR 353 (938)
Q Consensus 277 ~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~ 353 (938)
.+... ..+++-++|+|+++.-+....+.+...+-.-..++.+|++|.+. .+...+ .....+.+.+++.++..+.+..
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred HHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 22211 12566688999997655566777888887766677777777654 344333 3356899999999999998877
Q ss_pred hhcCCCCCCCchhHHHHHHHHHhhcCCchhHH
Q 035647 354 FAFFGRPPSECEQLVEIGQKIVGNCKGLPLAA 385 (938)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 385 (938)
... .. ...+...+..++|.|+.+
T Consensus 178 ~~~-----~~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 178 QSS-----AE----ISEILTALRINYGRPLLA 200 (325)
T ss_pred Hhc-----cC----hHHHHHHHHHcCCCHHHH
Confidence 531 11 112455788899999643
No 190
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.11 E-value=0.0005 Score=66.85 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=52.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
..-+.++|.+|+|||.||..+++.... .. ..+.|++ ..+++..+ .... .....+...+ .+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~-~g-~~v~f~~------~~~L~~~l----~~~~-~~~~~~~~~~----~l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR-KG-YSVLFIT------ASDLLDEL----KQSR-SDGSYEELLK----RLK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEE------HHHHHHHH----HCCH-CCTTHCHHHH----HHH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc-CC-cceeEee------cCceeccc----cccc-cccchhhhcC----ccc-c
Confidence 456999999999999999999886322 22 3456664 33444443 3221 1112222222 222 3
Q ss_pred eeeEEeCCCCCCCcCCchh--hhhhhccC-CCCCEEEEEcCCh
Q 035647 286 RFFLVLDDVWTDDYSKWEP--FHNCLMHG-LRGSKILVTTRNE 325 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~~ 325 (938)
-=||||||+.......|.. +...+... .++ .+||||.-.
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 4588899996554444433 33322221 223 688888853
No 191
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.10 E-value=0.0049 Score=59.05 Aligned_cols=137 Identities=17% Similarity=0.196 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc------------------cCCCeEEEEEe
Q 035647 183 GRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI------------------NNFDKRMWVCV 244 (938)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 244 (938)
|-++..+.+...+... .-.+.+.++|..|+||+++|..+++..--. ....-+.|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4566677777777432 245678999999999999999987741111 11222333322
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc-----CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEE
Q 035647 245 SDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV-----GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKIL 319 (938)
Q Consensus 245 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 319 (938)
.... ..-..++.. .+.+.+. ++.=++|+||++.-..+.++.|+..+-....++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2210 011222222 3333322 456689999997766677888888888877888998
Q ss_pred EEcCChH-HHHhc-ccCCeEecCCCC
Q 035647 320 VTTRNEK-VVRMM-ESTDVISIKELS 343 (938)
Q Consensus 320 vTtr~~~-~~~~~-~~~~~~~l~~L~ 343 (938)
++|++.. +...+ .....+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888754 33332 224466665553
No 192
>CHL00176 ftsH cell division protein; Validated
Probab=97.09 E-value=0.0066 Score=71.01 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=93.3
Q ss_pred CccccchHHHHHHHHH---hhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSK---LLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.++.|.++..+++.+. +..... -+....+-|.++|++|+|||++|+.++.... . -|+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~-----p~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--V-----PFFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--C-----CeeeccH----HH
Confidence 4678887766655554 322110 0112355699999999999999999988521 1 1232221 11
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCC----------cCCchh-hhhhh---cc--CCCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDD----------YSKWEP-FHNCL---MH--GLRGS 316 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~-l~~~l---~~--~~~gs 316 (938)
+. ....+ .........+.......+++|++||++.-. ...+.. +...+ .. ...+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 011122223333345678999999994210 011112 22222 11 23455
Q ss_pred EEEEEcCChHHHHh-c----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC
Q 035647 317 KILVTTRNEKVVRM-M----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG 380 (938)
Q Consensus 317 ~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 380 (938)
.||.||........ + .-...+.++..+.++-.++++.++..... .. ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 67777776443221 1 12457888888999999999887643211 11 1223457777776
No 193
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.0022 Score=65.44 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=59.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
...+.++|.+|+|||+||..+++.. ...-..+++++ ..++...+-..... .....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 4578999999999999999999863 22334556664 34455444443321 111112 2233343 3
Q ss_pred eeeEEeCCCCCCCcCCchh--hhhhhcc-CCCCCEEEEEcCC
Q 035647 286 RFFLVLDDVWTDDYSKWEP--FHNCLMH-GLRGSKILVTTRN 324 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~iivTtr~ 324 (938)
.=+||+||+.......|.. +...+.. ....-.+||||.-
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488899996655555654 3222322 1224467888874
No 194
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.05 E-value=0.00075 Score=64.07 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=67.4
Q ss_pred ccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccc
Q 035647 778 LNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEW 857 (938)
Q Consensus 778 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 857 (938)
+.+...++|++|. +..++.+..++.|..|.|.++. ++.+.+.+ ...+|+|+.|.+.+| .+.++
T Consensus 41 ~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNr-It~I~p~L--------------~~~~p~l~~L~LtnN-si~~l 103 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNR-ITRIDPDL--------------DTFLPNLKTLILTNN-SIQEL 103 (233)
T ss_pred ccccceecccccc-hhhcccCCCccccceEEecCCc-ceeeccch--------------hhhccccceEEecCc-chhhh
Confidence 4466677777774 3344556667778888887655 66554432 135778888888876 33443
Q ss_pred cccccccccCCcccEEeecCCccccCCC----cCCCCCCCccEEEEcCCc
Q 035647 858 EIEKEDIAVMPQLISLELGSCSKLKSLP----VDLLRSQKLKMLEIYNCP 903 (938)
Q Consensus 858 ~~~~~~~~~l~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~c~ 903 (938)
.... ....||.|++|.+.+|+. +.-+ -.+..+|+|+.||.++-.
T Consensus 104 ~dl~-pLa~~p~L~~Ltll~Npv-~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 104 GDLD-PLASCPKLEYLTLLGNPV-EHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhcc-hhccCCccceeeecCCch-hcccCceeEEEEecCcceEeehhhhh
Confidence 3211 145788888888888863 3322 235567888888887654
No 195
>PRK06526 transposase; Provisional
Probab=97.05 E-value=0.00099 Score=68.71 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=54.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
..-+.++|++|+|||+||..+...... ..+ .+.|+ +..++...+..... ..... ..+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~------t~~~l~~~l~~~~~-----~~~~~---~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFA------TAAQWVARLAAAHH-----AGRLQ---AELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhh------hHHHHHHHHHHHHh-----cCcHH---HHHHHh--cc
Confidence 346899999999999999999875322 222 23343 33444444433221 11111 222222 23
Q ss_pred eeeEEeCCCCCCCcCCch--hhhhhhcc-CCCCCEEEEEcCCh
Q 035647 286 RFFLVLDDVWTDDYSKWE--PFHNCLMH-GLRGSKILVTTRNE 325 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 325 (938)
.-+||+||+.......+. .+...+.. ..++ .+|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 468999999543222232 23333332 2234 488888854
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=97.04 E-value=0.00031 Score=67.66 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=27.4
Q ss_pred EEEEEecCCChHHHHHHHHHcccccc-cCCCeEEE
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVI-NNFDKRMW 241 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 241 (938)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999874432 45676776
No 197
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.018 Score=61.32 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=65.9
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCC
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPP 361 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 361 (938)
++.-++|+|+++.-+....+.+...+..-..++.+|++|.+. .+...+ .....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 456689999997655667777888887766677777666654 444443 335689999999999999886531 1
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 362 SECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
+ .+..++..++|.|+.+..+
T Consensus 182 -~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 -T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -c------hHHHHHHHcCCCHHHHHHH
Confidence 1 1245788999999876554
No 198
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.03 E-value=0.0081 Score=66.30 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=85.4
Q ss_pred CccccchHHHHHHHHHhhcccC-------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG-------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|-+..+++|.+.+.-.-. .+-...+-+.++|++|+|||++|+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4688999888888876531100 01134678999999999999999999985 22222 22211 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCC------CcC----Cch-hhhhhhc---c--CCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTD------DYS----KWE-PFHNCLM---H--GLR 314 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~------~~~----~~~-~l~~~l~---~--~~~ 314 (938)
.+ .....+. .......+. ......+.+|++|+++.- ... ... .+...+. . ...
T Consensus 214 ~l----~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 EF----VQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HH----HHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11 1111110 011122222 222357899999998421 000 011 1222221 1 124
Q ss_pred CCEEEEEcCChHHHHh-c----ccCCeEecCCCChHHHHHHHHHhh
Q 035647 315 GSKILVTTRNEKVVRM-M----ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 315 gs~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
+..||+||........ + .-...+.++..+.++..++|..+.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 5678888886543321 1 124578888888888888887665
No 199
>PRK06921 hypothetical protein; Provisional
Probab=97.00 E-value=0.003 Score=65.80 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=56.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccC-CCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINN-FDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
...+.++|.+|+|||.||..+++. .... -..+++++. .+++..+...+ +.....+ +.+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~-~~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKL-NRM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHH-HHh-c
Confidence 467999999999999999999986 3232 345667764 23333332222 1111112 222 2
Q ss_pred ceeeEEeCCCCC-----CCcCCchh--hhhhhccC-CCCCEEEEEcCCh
Q 035647 285 KRFFLVLDDVWT-----DDYSKWEP--FHNCLMHG-LRGSKILVTTRNE 325 (938)
Q Consensus 285 ~~~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtr~~ 325 (938)
+-=|||+||+.. +....|.. +...+... ..+..+||||...
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 356999999932 22334443 44433321 2345688888853
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.00 E-value=0.0011 Score=65.44 Aligned_cols=112 Identities=12% Similarity=-0.006 Sum_probs=61.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHhhcC
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN--LGELQSLLQHIYASIVG 284 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 284 (938)
.++.|+|..|.||||+|..++.. ...+-..++.+. ..++.+.....+++.++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999888875 222333344342 1112222233455555533222 2233444444444 233
Q ss_pred ceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 285 KRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 285 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
+.-+||+|.+..-+.++...+...+ ...|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 4458999999432222222233222 33578999999874
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.99 E-value=0.0036 Score=66.47 Aligned_cols=122 Identities=14% Similarity=0.173 Sum_probs=72.0
Q ss_pred cchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 035647 183 GRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE 262 (938)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 262 (938)
+|....+...+++..-.. ....+-+.++|..|+|||.||.++++... ...+ .+.++++ ..++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEH------HHHHHHHHHHHh
Confidence 455555555555542211 12346799999999999999999999733 2223 3556644 345555555543
Q ss_pred CCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchh--hhhhhcc-C-CCCCEEEEEcCC
Q 035647 263 GSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEP--FHNCLMH-G-LRGSKILVTTRN 324 (938)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~gs~iivTtr~ 324 (938)
.. +..+. +.. + .+-=||||||+.-+....|.. +...+.. . ..+-.+|+||.-
T Consensus 205 ~~-----~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 12222 222 2 345699999997666667753 4444432 2 245678888884
No 202
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.99 E-value=0.0013 Score=64.75 Aligned_cols=132 Identities=24% Similarity=0.248 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC--CH----------
Q 035647 183 GRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF--DE---------- 250 (938)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~---------- 250 (938)
.+..+-...++.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-.. +.
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 34455566666665 24489999999999999998888764445888888887422110 00
Q ss_pred -HHHHHHHHHHhcCCCCCcccHHHHHHH------HHHhhcCc---eeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEE
Q 035647 251 -FRIAKAIIEALEGSAPNLGELQSLLQH------IYASIVGK---RFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILV 320 (938)
Q Consensus 251 -~~~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 320 (938)
.-....+...+..-. .....+...+. -..+++++ ...+|+|++++-...++.. .+-..+.+||+|+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKM---ILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHH---HHcccCCCcEEEE
Confidence 011222222222211 11122222211 01234454 4589999997655444444 3445567999999
Q ss_pred EcCChH
Q 035647 321 TTRNEK 326 (938)
Q Consensus 321 Ttr~~~ 326 (938)
+--..+
T Consensus 152 ~GD~~Q 157 (205)
T PF02562_consen 152 TGDPSQ 157 (205)
T ss_dssp EE----
T ss_pred ecCcee
Confidence 987543
No 203
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.019 Score=59.91 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=96.2
Q ss_pred ccccchHHHHHHHHHhhcccC-C------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFG-E------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~-~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
++-|-++.+++|.+...-+-- + +=+.++-|.+||+||.|||-||++|++. ....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc------
Confidence 567889999988887632210 0 1235678999999999999999999996 44444 32222
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCCC-----------CCcCCchhhhhhhc---cC--CCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVWT-----------DDYSKWEPFHNCLM---HG--LRG 315 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~-----------~~~~~~~~l~~~l~---~~--~~g 315 (938)
.++.+..-+ +...++..+.+.-+ ..+..|++|.++- .+.+.-..+...|. .+ ...
T Consensus 219 --SElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 --SELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 122222211 11234444554444 5689999999832 01111122222222 11 235
Q ss_pred CEEEEEcCChHHHHhc----c-cCCeEecCCCChHHH-HHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 316 SKILVTTRNEKVVRMM----E-STDVISIKELSEQEC-WWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 316 s~iivTtr~~~~~~~~----~-~~~~~~l~~L~~~ea-~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
-|||..|...++.... + -+..++++ ++..++ .++|+-++- .....+.-+++. |++.|.|.-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtr-kM~l~~dvd~e~----la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTR-KMNLADDVDLEL----LARLTEGFS 357 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhh-hccCccCcCHHH----HHHhcCCCc
Confidence 6899988865544321 1 25577776 555544 556655542 222233344454 555565544
No 204
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00031 Score=70.38 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=113.1
Q ss_pred cccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchh-hhccCccEEEEeCCCC
Q 035647 713 KKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWV-VLLNKLKKLYLTHCNN 791 (938)
Q Consensus 713 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~ 791 (938)
.++.++.|++.+|.+++ -..+...+..+|.|+.|+|+.|.+...+ ... ....+|+.|.|.+...
T Consensus 69 ~~~~v~elDL~~N~iSd--------------WseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD--------------WSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred Hhhhhhhhhcccchhcc--------------HHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCC
Confidence 34678888999988874 3556667788899999999998865421 111 2456888888877642
Q ss_pred C-CCC-CCCCCCCCccceeeccccCceEeCcccccCCC--------CCCCCC-------CcccccCCccceeeccCcccc
Q 035647 792 C-EIM-PSLGKLPSLEILQIIGMRSVKRVGDEFWGIEN--------HHSSSS-------SSSIVAFPKLKKLTLRGLYEW 854 (938)
Q Consensus 792 ~-~~l-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~--------~~~~~~-------~~~~~~l~~L~~L~l~~~~~l 854 (938)
. +.. ..+..+|.++.|+++.+. +..+...-.+... +..... ..-..-||++..+.+..||.
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl- 211 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL- 211 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc-
Confidence 1 111 134567777777776542 1111100000000 000000 00112577888887777752
Q ss_pred ccccccccccccCCcccEEeecCCccccCCC--cCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceee
Q 035647 855 EEWEIEKEDIAVMPQLISLELGSCSKLKSLP--VDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQI 928 (938)
Q Consensus 855 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i 928 (938)
+.... ......+|.+..|++..+ ++.++. ..+..+++|..|.+.++|..... . .+..-+-.|+.+|.+++
T Consensus 212 K~~s~-ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l-~-~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 212 KTESS-EKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL-R-GGERRFLLIARLTKVQV 283 (418)
T ss_pred cchhh-cccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc-c-CCcceEEEEeeccceEE
Confidence 33322 223457888888888776 455543 34667889999999999875432 1 13334455677887765
No 205
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.94 E-value=0.0022 Score=77.95 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=77.7
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|.+..++.+.+.+..... ..+....++.++|++|+|||.+|+.++.. .-+.....+-++++...+ ..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~----~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE----AH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh----hh
Confidence 4689999999999998864311 11234568999999999999999988774 212222333333332111 11
Q ss_pred HHHHHhcCCCCCc--ccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEc
Q 035647 256 AIIEALEGSAPNL--GELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTT 322 (938)
Q Consensus 256 ~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 322 (938)
.+..-++...... .....+...+++ ....+|+||++..-+++.++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 1112222221111 111122233332 345699999997666666666666555442 456677777
Q ss_pred CC
Q 035647 323 RN 324 (938)
Q Consensus 323 r~ 324 (938)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 74
No 206
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0023 Score=62.02 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=24.4
Q ss_pred EEEEEecCCChHHHHHHHHHccccc-ccCCCeEEE
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCV-INNFDKRMW 241 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~w 241 (938)
.|.|+|++|+||||||+++...... .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 4899999999999999999865221 123355555
No 207
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.92 E-value=4e-05 Score=85.46 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=21.5
Q ss_pred CCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccC
Q 035647 608 LCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMP 649 (938)
Q Consensus 608 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp 649 (938)
++.|+.|||+.|+ +.++- .+..|++|+|||+++|.+..+|
T Consensus 186 l~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp 225 (1096)
T KOG1859|consen 186 LPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVP 225 (1096)
T ss_pred HHHhhhhccchhh-hhhhH-HHHhcccccccccccchhcccc
Confidence 4455555555555 44443 3555555555555555555554
No 208
>PRK09183 transposase/IS protein; Provisional
Probab=96.92 E-value=0.0032 Score=65.40 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
..+.|+|.+|+|||+||..++..... .. ..+.+++ ..++...+...... .... ..+.+.+ ...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G-~~v~~~~------~~~l~~~l~~a~~~-----~~~~---~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AG-IKVRFTT------AADLLLQLSTAQRQ-----GRYK---TTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cC-CeEEEEe------HHHHHHHHHHHHHC-----CcHH---HHHHHHh-cCC
Confidence 46789999999999999999765221 12 2344443 23333333222211 1111 1222222 345
Q ss_pred eeEEeCCCCCCCcCCch--hhhhhhccC-CCCCEEEEEcCCh
Q 035647 287 FFLVLDDVWTDDYSKWE--PFHNCLMHG-LRGSKILVTTRNE 325 (938)
Q Consensus 287 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 325 (938)
-++|+||+.......+. .+...+... ..+ .+||||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 69999999643333333 244433321 234 488888853
No 209
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.91 E-value=0.017 Score=66.63 Aligned_cols=179 Identities=14% Similarity=0.092 Sum_probs=90.9
Q ss_pred CCccccchHHHHHHHHHhh---cccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 178 VSEVRGRDEEMNILKSKLL---CEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
-.+++|-+...+++.+.+. .... .+....+-+.++|++|+|||++|+.++.... .. ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH----H
Confidence 3468898777666655443 1100 0122345689999999999999999998521 22 222221 1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCC----------cCCchh----hhhhhc--cCCCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDD----------YSKWEP----FHNCLM--HGLRG 315 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~g 315 (938)
.+ .+...+. ....+...+.......+.+|+||+++.-. ...+.. +...+. ....+
T Consensus 123 ~~----~~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DF----VEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 1111110 11112222223333567999999994310 001111 111111 12234
Q ss_pred CEEEEEcCChHHH-Hhc----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCc
Q 035647 316 SKILVTTRNEKVV-RMM----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGL 381 (938)
Q Consensus 316 s~iivTtr~~~~~-~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (938)
..||.||...... ..+ .-...+.++..+.++-.++|+.+...... ..... ...+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCC
Confidence 4566677654311 111 12457888888888888998877633221 11112 23577777663
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.90 E-value=0.00099 Score=70.88 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=42.0
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+++|.++.++++++++...........+++.++|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997643312335689999999999999999999886
No 211
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.0018 Score=72.43 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=109.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
++++|-+.-...|...+... .-.+.-...|.-|+||||+|+-+++..--... .....+..-...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 46799999999999988643 23456678999999999999998764111100 0011111111111221
Q ss_pred HH--------hcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHH
Q 035647 259 EA--------LEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVV 328 (938)
Q Consensus 259 ~~--------l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~ 328 (938)
.- -+......+++.++.+.+.-. .+++.=++|+|.|..-+...|+.+...+-.-....+.|+.|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 111111222222222222211 12445589999998777788888888776655566655555543 333
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
..+ .....|.+..++.++-...+...+....-..++ +...-|++..+|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~----~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE----DALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCH----HHHHHHHHHcCCChh
Confidence 332 446799999999999888888777544433332 333446666666543
No 212
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.88 E-value=0.00046 Score=81.25 Aligned_cols=56 Identities=27% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCcccEEeecCCCCC-cccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCce
Q 035647 608 LCNLQTIEIEECSNL-RRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEF 664 (938)
Q Consensus 608 L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 664 (938)
||+|+.|.+.+-... .++-....++++|..||+|++++..+ .+|++|++|+.|.+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence 566666666653311 11223344666777777777666655 566666666666543
No 213
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.88 E-value=0.0026 Score=61.58 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=36.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++||.++.++++.-.-. ++...-+.|.|+||+||||-+..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHH
Confidence 579999999988866553 235667899999999999988887774
No 214
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.85 E-value=0.0026 Score=68.15 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=57.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
.-+.++|.+|+|||.||..+++... ..-..++++++. +++..+...-... ..+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTAD------ELIEILREIRFNN---DKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHHH---H-HHhc-cC
Confidence 5699999999999999999998632 223356677543 3444443321111 1111111 1 2222 23
Q ss_pred eeEEeCCCCCCCcCCchh--hhhhhccC-CCCCEEEEEcCC
Q 035647 287 FFLVLDDVWTDDYSKWEP--FHNCLMHG-LRGSKILVTTRN 324 (938)
Q Consensus 287 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 324 (938)
=|||+||+.......|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996654444433 44433332 235578888885
No 215
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.84 E-value=0.0035 Score=63.31 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=52.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh-c---CC-----CCCcccHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEAL-E---GS-----APNLGELQSLL 275 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~---~~-----~~~~~~~~~~~ 275 (938)
.-+++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+ +++.. . .. ..+..+.....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 5689999999999999999998875 223346789999876 55555443 33321 0 00 01112222334
Q ss_pred HHHHHhhcC-ceeeEEeCCC
Q 035647 276 QHIYASIVG-KRFFLVLDDV 294 (938)
Q Consensus 276 ~~l~~~l~~-~~~LlVlDdv 294 (938)
..+.+.+.. +.-++|+|.+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHhhcCccEEEEeCc
Confidence 444444443 4568888887
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.79 E-value=0.0054 Score=62.77 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=51.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHH----hc----C-CCCCcccHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEA----LE----G-SAPNLGELQSLL 275 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~----~-~~~~~~~~~~~~ 275 (938)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.+. +++.. +. . ......+..+..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 5679999999999999999999875 22334678999887 55554433 23322 10 0 001111222233
Q ss_pred HHHHHhhcCceeeEEeCCC
Q 035647 276 QHIYASIVGKRFFLVLDDV 294 (938)
Q Consensus 276 ~~l~~~l~~~~~LlVlDdv 294 (938)
+.+...+..+.-++|+|.+
T Consensus 98 ~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHhcccEEEEeCc
Confidence 3444444455668888887
No 217
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0085 Score=71.47 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=75.9
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|-++.++.|...+..... ..+.....+.++|++|+|||++|+.++... . ...+.++++......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----
Confidence 3589999999999998863211 012235678999999999999999998752 1 234455554332211
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEcC
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTTR 323 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 323 (938)
.+.+.++.+...... + ....+.+.++ ....+++||++..-..+.++.+...+..+. ..+-||+||.
T Consensus 529 ~~~~LiG~~~gyvg~-~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 529 TVSRLIGAPPGYVGF-D-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred cHHHHcCCCCCcccc-c-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 122223322111110 0 0111222233 234699999997666666666666554331 2344777776
No 218
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.74 E-value=0.012 Score=60.65 Aligned_cols=171 Identities=17% Similarity=0.176 Sum_probs=99.1
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCCCHH-HHHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNFDEF-RIAKAI 257 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~-~~~~~i 257 (938)
.++|-.++-+.+-.++...-- .+...-|.|+|+.|+|||+|.-.+..+ ...| +..+-|........+ -.+..|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 478888888887777753321 234557899999999999999888776 2233 444555555544332 244555
Q ss_pred HHHhc----CCCCCcccHHHHHHHHHHhhc------CceeeEEeCCCCCCCcCCchhhhhhhcc-----CCCCCEEEEEc
Q 035647 258 IEALE----GSAPNLGELQSLLQHIYASIV------GKRFFLVLDDVWTDDYSKWEPFHNCLMH-----GLRGSKILVTT 322 (938)
Q Consensus 258 ~~~l~----~~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~~~~~~~~l~~~l~~-----~~~gs~iivTt 322 (938)
..++. .......+..+....+...|+ +.++.+|+|.++-.....-..+...+.+ ..+=+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 55554 222223333344445555553 3468899988843221111112222221 23456678899
Q ss_pred CChH-------HHHhcccCCeEecCCCChHHHHHHHHHhh
Q 035647 323 RNEK-------VVRMMESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 323 r~~~-------~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
|-.. |-....-..++-++.++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8532 22222224467778888999999998876
No 219
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.74 E-value=0.0049 Score=75.37 Aligned_cols=136 Identities=14% Similarity=0.216 Sum_probs=77.8
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|-+..++.+...+..... ..+.....+.++|++|+|||+||+.+++. .-..-...+-++.+...+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc---
Confidence 4689999999999988863211 01223456789999999999999999874 111112344444443222111
Q ss_pred HHHHHhcCCCC--CcccHHHHHHHHHHhhcCce-eeEEeCCCCCCCcCCchhhhhhhccC-----------CCCCEEEEE
Q 035647 256 AIIEALEGSAP--NLGELQSLLQHIYASIVGKR-FFLVLDDVWTDDYSKWEPFHNCLMHG-----------LRGSKILVT 321 (938)
Q Consensus 256 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivT 321 (938)
+...++.... ...... .+.+.++.++ .+++||+++.-+++.++.+...+..+ -..+-+|+|
T Consensus 584 -~~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 584 -VSKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred -HHHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1111222111 111112 2334444444 58999999776666677777665543 134567777
Q ss_pred cCC
Q 035647 322 TRN 324 (938)
Q Consensus 322 tr~ 324 (938)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 774
No 220
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0072 Score=65.98 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=85.4
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc-------------------CCCeEE
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN-------------------NFDKRM 240 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 240 (938)
.++|-+....++..+..... ...+.+.++|++|+||||+|..+++...-.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 46777888888888886432 1344799999999999999999988521100 112344
Q ss_pred EEEeCCCCCH---HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCE
Q 035647 241 WVCVSDNFDE---FRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSK 317 (938)
Q Consensus 241 wv~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 317 (938)
.+..+..... .+..+++.+...... ..++.-++++|+++.-..+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 4444443331 222222222221110 025677999999965444455556666666666778
Q ss_pred EEEEcCCh-HHHHhc-ccCCeEecCCCChHHH
Q 035647 318 ILVTTRNE-KVVRMM-ESTDVISIKELSEQEC 347 (938)
Q Consensus 318 iivTtr~~-~~~~~~-~~~~~~~l~~L~~~ea 347 (938)
+|++|... .+...+ .....+.+.+.+..+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 88888743 333322 2245667766333333
No 221
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.0058 Score=65.83 Aligned_cols=181 Identities=10% Similarity=0.054 Sum_probs=99.3
Q ss_pred HHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccc---ccccCCCe-----EEEEEeCCCCCHHHHHHHHHH
Q 035647 188 MNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDS---CVINNFDK-----RMWVCVSDNFDEFRIAKAIIE 259 (938)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~f~~-----~~wv~~~~~~~~~~~~~~i~~ 259 (938)
-+++...+.. +.-.+.+.+.|+.|+||+++|..++... .....-.+ ..++..+..++...+..+
T Consensus 11 ~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--- 82 (334)
T PRK07993 11 YEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE--- 82 (334)
T ss_pred HHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc---
Confidence 3455555532 2346788999999999999999886631 00000000 001111111111110000
Q ss_pred HhcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHHHhc-ccCCe
Q 035647 260 ALEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVVRMM-ESTDV 336 (938)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~-~~~~~ 336 (938)
-+......+.+.++.+.+... ..+++-++|+|+++.-+....+.+...+..-..++.+|++|.+. .+...+ .....
T Consensus 83 -~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 83 -KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred -cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 000001111222222222211 12667799999996655566777888887766677777666654 344443 33568
Q ss_pred EecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 337 ISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 337 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
+.+.+++.+++.+.+.+.. + .+ .+.+..++..++|.|..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-~----~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV-T----MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc-C----CC----HHHHHHHHHHcCCCHHHHH
Confidence 8999999999998886542 1 11 2235678999999996443
No 222
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.71 E-value=0.0073 Score=64.71 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC-Ce-EEEEEeCC-CCCHHHHHHHHHHHhcC
Q 035647 187 EMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DK-RMWVCVSD-NFDEFRIAKAIIEALEG 263 (938)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~-~~wv~~~~-~~~~~~~~~~i~~~l~~ 263 (938)
...++++.+..- .+-+.+.|+|.+|+|||||++++++. ..... +. ++|+.+.+ ..++.++.+.+...+..
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 344577777642 13456799999999999999999885 32222 33 45666554 44667888888777765
Q ss_pred CCCCcccHH-----HHHHHHHHhh--cCceeeEEeCCC
Q 035647 264 SAPNLGELQ-----SLLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 264 ~~~~~~~~~-----~~~~~l~~~l--~~~~~LlVlDdv 294 (938)
...+..... .....+.+++ ++++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 432222111 1222333333 388999999999
No 223
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.69 E-value=0.0012 Score=47.05 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCcceEEEeecCCCCCCCchhhhccCccEEEEeCCC
Q 035647 755 PNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCN 790 (938)
Q Consensus 755 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 790 (938)
++|++|++++|.+.. +|..+.+|++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCC
Confidence 357777777777776 77667777777777777775
No 224
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.66 E-value=0.0079 Score=62.36 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=54.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------CCcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVIN----NFDKRMWVCVSDNFDEFRIAKAIIEALEGSA------------PNLG 269 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 269 (938)
..+.=|+|.+|+|||+||.+++-...... .=..++|++-...++.+.+. +|++....+. .+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 45889999999999999988865432222 22469999999999887775 4666544221 1112
Q ss_pred cHHHHHHHHHHhhc-CceeeEEeCCC
Q 035647 270 ELQSLLQHIYASIV-GKRFFLVLDDV 294 (938)
Q Consensus 270 ~~~~~~~~l~~~l~-~~~~LlVlDdv 294 (938)
+....+..+...+. .+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 22223333333333 44458888887
No 225
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.027 Score=55.78 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=89.8
Q ss_pred CCccccchHHHHH---HHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHH
Q 035647 178 VSEVRGRDEEMNI---LKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 178 ~~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 254 (938)
-++++|.++...+ |++.|..+..-++..++-|..+|++|.|||.+|+++++... ..| +-|.+.+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~---l~vkat~-------- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL---LLVKATE-------- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce---EEechHH--------
Confidence 3568999887654 66667554333455788999999999999999999999633 222 2222111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCC--------CcCCchhhhhhhcc------CCCCCEEE
Q 035647 255 KAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTD--------DYSKWEPFHNCLMH------GLRGSKIL 319 (938)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~~~~~~l~~~l~~------~~~gs~ii 319 (938)
-|-+.++ +....++.+.+.- +..++++++|.++-- -..+...+..+|.. .+.|...|
T Consensus 187 -liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 187 -LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred -HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1222222 1222333344333 256999999988320 01122222222221 23465556
Q ss_pred EEcCChHHHHh-ccc--CCeEecCCCChHHHHHHHHHhhcC
Q 035647 320 VTTRNEKVVRM-MES--TDVISIKELSEQECWWLFKRFAFF 357 (938)
Q Consensus 320 vTtr~~~~~~~-~~~--~~~~~l~~L~~~ea~~lf~~~~~~ 357 (938)
-.|...+.... +.. ...++...-+++|-.+++..++-.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 66665554432 222 346666677788888888887743
No 226
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.64 E-value=0.0068 Score=59.30 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=28.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEE
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVC 243 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 243 (938)
...+|.+.|++|+||||+|+.++.. ....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4569999999999999999999885 444555555553
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0047 Score=63.85 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=58.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
...-+.++|.+|+|||.||.++.++.- ..=-.+.+++ ..+++.++....... . ....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~------~~el~~~Lk~~~~~~-----~---~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFIT------APDLLSKLKAAFDEG-----R---LEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhcC-----c---hHHHHHHHh-h
Confidence 455689999999999999999999733 2223455664 445666666555431 1 112222222 2
Q ss_pred ceeeEEeCCCCCCCcCCchh--hhhhhccCCCCCEEEEEcCC
Q 035647 285 KRFFLVLDDVWTDDYSKWEP--FHNCLMHGLRGSKILVTTRN 324 (938)
Q Consensus 285 ~~~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~iivTtr~ 324 (938)
+-=||||||+.......|.. +...+...-.....++||-.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~ 208 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNL 208 (254)
T ss_pred cCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCC
Confidence 33489999997655566653 33322221111122777764
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0085 Score=69.99 Aligned_cols=155 Identities=20% Similarity=0.270 Sum_probs=88.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccc---ccccCC-CeEEEEEeCCCCCHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDS---CVINNF-DKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~f-~~~~wv~~~~~~~~~~~~ 254 (938)
+.++||++|++++++.|....- + =-.++|.+|||||++|.-++... .+-... +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K-N-----NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------ 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK-N-----NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------ 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC-C-----CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------
Confidence 3489999999999999975432 1 12578999999999987776641 111111 111111
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCCC----C-----CcCCchhhhhhhccCCCCCEEEEEcCC
Q 035647 255 KAIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVWT----D-----DYSKWEPFHNCLMHGLRGSKILVTTRN 324 (938)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~----~-----~~~~~~~l~~~l~~~~~gs~iivTtr~ 324 (938)
-.+...+. ...-..+.++..+.+.+.++ .++..|++|.+.. . ..+.-+-+...|..+ .-++|-.|..
T Consensus 232 LD~g~LvA-GakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT~ 308 (786)
T COG0542 232 LDLGSLVA-GAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATTL 308 (786)
T ss_pred ecHHHHhc-cccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEeccH
Confidence 01111222 22334456666666666665 4489999999843 1 112222233333332 2355554444
Q ss_pred hHHHHhcc-------cCCeEecCCCChHHHHHHHHHh
Q 035647 325 EKVVRMME-------STDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 325 ~~~~~~~~-------~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
.+--+.+. ....+.+..-+.+++..+++..
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 33333322 2458889999999999988643
No 229
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.0011 Score=78.07 Aligned_cols=160 Identities=20% Similarity=0.211 Sum_probs=98.4
Q ss_pred CCcccEEeecCCCCCcc-cchhhh-cccCCCeEEeCCcccc--ccCccCCCCCCCCcCCceEecCCCCCCCCccCccccc
Q 035647 608 LCNLQTIEIEECSNLRR-LPQRIG-KLVNLRHLIFVDVYLD--YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMR 683 (938)
Q Consensus 608 L~~L~~L~L~~~~~l~~-lp~~i~-~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~ 683 (938)
-.+|++|+++|...+.. -|..++ .||+|+.|.+.+-.+. .+-.-..++++|..|++++++... ...++.|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-----l~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-----LSGISRLK 195 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-----cHHHhccc
Confidence 35789999988664433 333444 5899999999886532 222335688999999998877665 34445555
Q ss_pred cccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEe
Q 035647 684 DLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMC 763 (938)
Q Consensus 684 ~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 763 (938)
+|..| .+.++ ..........+..+++|+.||+|........ .......+.-..+|+|+.|+.+
T Consensus 196 nLq~L----~mrnL---e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~----------~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 196 NLQVL----SMRNL---EFESYQDLIDLFNLKKLRVLDISRDKNNDDT----------KIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred cHHHH----hccCC---CCCchhhHHHHhcccCCCeeeccccccccch----------HHHHHHHHhcccCccccEEecC
Confidence 55433 23332 2222233455778899999999977654311 1234445556668899999999
Q ss_pred ecCCCCCCCch-hhhccCccEEEEeCC
Q 035647 764 YYKGKTALPSW-VVLLNKLKKLYLTHC 789 (938)
Q Consensus 764 ~~~~~~~lp~~-~~~l~~L~~L~L~~~ 789 (938)
++.+...+-.. +..-++|+.+.+-+|
T Consensus 259 gTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 259 GTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 87765532221 224455665555443
No 230
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.60 E-value=0.0023 Score=63.41 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=31.0
Q ss_pred hhccCCCcccEEeecCCCCCcccchh----hhcccCCCeEEeCCcccc
Q 035647 603 ETCCELCNLQTIEIEECSNLRRLPQR----IGKLVNLRHLIFVDVYLD 646 (938)
Q Consensus 603 ~~i~~L~~L~~L~L~~~~~l~~lp~~----i~~L~~L~~L~l~~~~l~ 646 (938)
+.+-++++|+..+|+.|-.-...|+. |.+-+.|.||.+++|.+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44567888888888888744445544 456678888888888654
No 231
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.59 E-value=0.014 Score=54.96 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=61.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC---CCHHHHHHHHHHHhc--------CC----CCCc-cc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN---FDEFRIAKAIIEALE--------GS----APNL-GE 270 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~--------~~----~~~~-~~ 270 (938)
..|-|++-.|.||||+|...+-. ...+=..+.++.+-.. ..... +++.+. .. ..+. .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~----~l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELK----ALERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHH----HHHhCCCcEEEECCCCCccCCCChHHH
Confidence 47889999999999999777654 2122223444433222 22222 233331 00 0011 11
Q ss_pred ---HHHHHHHHHHhhcCce-eeEEeCCCCC---CCcCCchhhhhhhccCCCCCEEEEEcCChH
Q 035647 271 ---LQSLLQHIYASIVGKR-FFLVLDDVWT---DDYSKWEPFHNCLMHGLRGSKILVTTRNEK 326 (938)
Q Consensus 271 ---~~~~~~~l~~~l~~~~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 326 (938)
.....+..++.+.... =|+|||++-. -..-..+.+...+.....+..||+|.|+..
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1112333344444444 4999999822 122344556666666667789999999854
No 232
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.55 E-value=0.0017 Score=58.96 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 233
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.54 E-value=0.013 Score=60.47 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=54.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------CCc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINN----FDKRMWVCVSDNFDEFRIAKAIIEALEGSA------------PNL 268 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 268 (938)
.-.++.|+|.+|+|||+||.+++........ -..++|++....++...+. ++++..+... ...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 5679999999999999999999754222221 3679999988877655443 3334333211 111
Q ss_pred ccHHHHHHHHHHhhc-C-ceeeEEeCCC
Q 035647 269 GELQSLLQHIYASIV-G-KRFFLVLDDV 294 (938)
Q Consensus 269 ~~~~~~~~~l~~~l~-~-~~~LlVlDdv 294 (938)
.+.......+...+. . +.-++|+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 122233344444443 3 5668899988
No 234
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.53 E-value=0.015 Score=58.81 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=74.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-----CCCHHHHHHHHHHHhcCCC------CC-cccHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-----NFDEFRIAKAIIEALEGSA------PN-LGELQ 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~-~~~~~ 272 (938)
+-.+++|||.+|.||||+++.+..= ...-.+.+++.-.+ .....+-..++++.++... +. ....+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3458999999999999999999973 33334444443221 1123344556666665332 11 22223
Q ss_pred HHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhcc--CCCCCEEEEEcCChHHHHhccc
Q 035647 273 SLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMH--GLRGSKILVTTRNEKVVRMMES 333 (938)
Q Consensus 273 ~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~iivTtr~~~~~~~~~~ 333 (938)
.-.-.+.+.+.-++-++|.|..-.. +...-..+...+.. ...|-..+..|.+-.+.+.+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 3334567778889999999987221 11111223333322 2357788888888888876643
No 235
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.49 E-value=0.013 Score=60.06 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=52.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCC------CeEEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNF------DKRMWVCVSDNFDEFRIAKAIIEALEGSA---------PNLG 269 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~ 269 (938)
.-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+. ++.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 56799999999999999999987642 1222 568899988776655443 3333322110 0112
Q ss_pred cHHHHHHHHHHhhc----CceeeEEeCCC
Q 035647 270 ELQSLLQHIYASIV----GKRFFLVLDDV 294 (938)
Q Consensus 270 ~~~~~~~~l~~~l~----~~~~LlVlDdv 294 (938)
+.++....+....+ .+.-|+|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 33444444443332 34558999998
No 236
>PRK04132 replication factor C small subunit; Provisional
Probab=96.49 E-value=0.043 Score=65.77 Aligned_cols=154 Identities=11% Similarity=0.010 Sum_probs=95.8
Q ss_pred cCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeC
Q 035647 214 MGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLD 292 (938)
Q Consensus 214 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlD 292 (938)
+.++||||+|..++++.- ...+ ..++-+++++......+ +++++.+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 778999999999998621 1223 34677777775555433 3333333211110 01245799999
Q ss_pred CCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHH
Q 035647 293 DVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEI 370 (938)
Q Consensus 293 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~ 370 (938)
+++.-+.++.+.|+..+-.....+++|+++.+.. +...+ .....+.+.+++.++-...+...+...+...+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 9976555566777777765455667777666543 33332 23568999999999998888776543221112 345
Q ss_pred HHHHHhhcCCchhHHHH
Q 035647 371 GQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 371 ~~~i~~~~~g~PLai~~ 387 (938)
...|++.++|.+..+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 66799999998854433
No 237
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.48 E-value=0.033 Score=59.15 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=24.1
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++.++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999996
No 238
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.48 E-value=0.00027 Score=62.54 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=36.4
Q ss_pred CcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCc
Q 035647 609 CNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSE 663 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 663 (938)
+-+++|++++|. +.++|.++..++.|+.|+++.|.+...|.-|..|.+|..|+.
T Consensus 77 ~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 77 PTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred chhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 456667777666 777777777777777777777776666666666666666654
No 239
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.48 E-value=0.013 Score=59.71 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=32.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD 249 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 249 (938)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5679999999999999999998875 222334678887765543
No 240
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.043 Score=59.06 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=63.9
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCC
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPP 361 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 361 (938)
++.-++|+|+++.-+...++.+...+-.-.+++.+|++|.+ ..+...+ .....+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 45568999999776667788888888776667766666655 4444333 335689999999999999887641 11
Q ss_pred CCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 362 SECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 362 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
+ ...++..++|.|..+..+
T Consensus 207 ---~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ---D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---h-----HHHHHHHcCCCHHHHHHH
Confidence 1 122577889999755444
No 241
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.46 E-value=0.048 Score=50.60 Aligned_cols=84 Identities=12% Similarity=0.250 Sum_probs=71.9
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhhh-chHHHHHHHHHHHhhhcchhh
Q 035647 1 MVVDTIVSFVLEQLISAAVEETKERLRLVKGVGKEVKRLSDNFQAIQAVLIDAEQRQV-KEAQVRRWLEKLKDASYDMED 79 (938)
Q Consensus 1 ~ma~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~l~~~~~~~ed 79 (938)
+.||.+.+||++.+++.+...+....+....++.-+++|...++.|.-++++.+.-.. -+..-+.-+++|.+...++++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999887422 122225667889999999999
Q ss_pred HHHHh
Q 035647 80 VLDEC 84 (938)
Q Consensus 80 ~ld~~ 84 (938)
++..|
T Consensus 81 LV~k~ 85 (147)
T PF05659_consen 81 LVEKC 85 (147)
T ss_pred HHHHh
Confidence 99876
No 242
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.44 E-value=0.023 Score=55.73 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=66.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeC--CCCCHHHH------HHHHHHHhcCC------CCCccc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVS--DNFDEFRI------AKAIIEALEGS------APNLGE 270 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~------~~~i~~~l~~~------~~~~~~ 270 (938)
+-.+++|+|..|+|||||++.++.. .......+++.-. ...+.... ..++++.++.. ......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3458999999999999999999874 2234444444211 11111111 11234444422 111222
Q ss_pred HHHHHHHHHHhhcCceeeEEeCCCCC-CCcCCchhhhhhhccC-CC-CCEEEEEcCChHHH
Q 035647 271 LQSLLQHIYASIVGKRFFLVLDDVWT-DDYSKWEPFHNCLMHG-LR-GSKILVTTRNEKVV 328 (938)
Q Consensus 271 ~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~~~ 328 (938)
.+...-.+.+.+-..+-++++|+.-. -+......+...+... .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 33334446666777889999999832 1222233344444332 22 67888888876654
No 243
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.43 E-value=0.0011 Score=61.96 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=46.7
Q ss_pred EEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceee
Q 035647 209 ISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFF 288 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 288 (938)
|.++|.+|+|||+||+.+++.. =....-+.++...+..++....--. ... ....+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~-~~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPS-NGQ-FEFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET--TTT-TCEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeec-ccc-ccccc-ccccccc-----cceeE
Confidence 6799999999999999999852 1234446677776776664322211 000 00000 0000000 17899
Q ss_pred EEeCCCCCCCcCCchhhhhh
Q 035647 289 LVLDDVWTDDYSKWEPFHNC 308 (938)
Q Consensus 289 lVlDdv~~~~~~~~~~l~~~ 308 (938)
+|||++...+...+..+...
T Consensus 69 l~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEESSCGG--HHHHHTTHHH
T ss_pred EEECCcccCCHHHHHHHHHH
Confidence 99999954343334444443
No 244
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.41 E-value=0.012 Score=62.86 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=55.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---------cccH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVI----NNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN---------LGEL 271 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 271 (938)
.-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....++.+.+. ++++.++.+... ..+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 56789999999999999998876432221 112478999999988887765 456666543210 1122
Q ss_pred HH---HHHHHHHhhc-CceeeEEeCCC
Q 035647 272 QS---LLQHIYASIV-GKRFFLVLDDV 294 (938)
Q Consensus 272 ~~---~~~~l~~~l~-~~~~LlVlDdv 294 (938)
++ .+..+...+. .+--|+|+|.+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 22 2333333343 34557888887
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.031 Score=63.19 Aligned_cols=133 Identities=17% Similarity=0.083 Sum_probs=75.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD--EFRIAKAIIEALEGSAPNLGELQSLLQHIYASI 282 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 282 (938)
...-|.|.|..|+|||+||+++++... +.+...+.+|+++.-.. .+.++. .+.....+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHH
Confidence 345789999999999999999999754 55556677777664211 111111 1223334555
Q ss_pred cCceeeEEeCCCCC------CCcCCchh----hhhhhc----c-CCCCCE--EEEEcCChHHHH-hcc----cCCeEecC
Q 035647 283 VGKRFFLVLDDVWT------DDYSKWEP----FHNCLM----H-GLRGSK--ILVTTRNEKVVR-MME----STDVISIK 340 (938)
Q Consensus 283 ~~~~~LlVlDdv~~------~~~~~~~~----l~~~l~----~-~~~gs~--iivTtr~~~~~~-~~~----~~~~~~l~ 340 (938)
.-.+-+|||||++- .+..+|.. +...+. . ...+.+ +|.|.....-.. ... -.....+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67899999999832 11233322 111111 1 233444 444544332111 111 13467888
Q ss_pred CCChHHHHHHHHHhh
Q 035647 341 ELSEQECWWLFKRFA 355 (938)
Q Consensus 341 ~L~~~ea~~lf~~~~ 355 (938)
.+...+-.++++...
T Consensus 572 ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF 586 (952)
T ss_pred CcchhHHHHHHHHHH
Confidence 888888777776654
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.40 E-value=0.019 Score=56.37 Aligned_cols=121 Identities=20% Similarity=0.284 Sum_probs=69.5
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
+-..++|-|...+.+++.-..-- ......-|.+||.-|+|||+|++++.+. +....-. -|.+...
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 34568999888888877533211 1223456899999999999999999886 3333322 2222210
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCC-CCcCCchhhhhhhccC---CCCCEEEEEcCC
Q 035647 257 IIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWT-DDYSKWEPFHNCLMHG---LRGSKILVTTRN 324 (938)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtr~ 324 (938)
+..+.-.+.+.|+. ..+||.|+.||+.- +....+..+...+..+ .+...++..|.+
T Consensus 123 ----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11112222233322 26799999999943 3345666677766543 233344444443
No 247
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.37 E-value=0.0047 Score=58.87 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=71.6
Q ss_pred ccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCC--CC
Q 035647 716 NLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNN--CE 793 (938)
Q Consensus 716 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~--~~ 793 (938)
+...++++.|.+.. .+.|..+++|..|.|.+|.++..-|.--..+++|..|.|.+|.. +.
T Consensus 43 ~~d~iDLtdNdl~~------------------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK------------------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred ccceecccccchhh------------------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 45566677666542 34566788999999999999883344334678899999999874 34
Q ss_pred CCCCCCCCCCccceeeccccCceEeC-cccccCCCCCCCCCCcccccCCccceeeccCc
Q 035647 794 IMPSLGKLPSLEILQIIGMRSVKRVG-DEFWGIENHHSSSSSSSIVAFPKLKKLTLRGL 851 (938)
Q Consensus 794 ~l~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 851 (938)
.+..+..+|.|++|.+-+++ ++.-. -..+ .+..+|+|+.|++.+-
T Consensus 105 dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~y------------vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNP-VEHKKNYRLY------------VLYKLPSLRTLDFQKV 150 (233)
T ss_pred hcchhccCCccceeeecCCc-hhcccCceeE------------EEEecCcceEeehhhh
Confidence 56678889999999998766 22111 0000 1346888888888764
No 248
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.026 Score=60.68 Aligned_cols=90 Identities=10% Similarity=0.113 Sum_probs=48.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
+.++|+++|.+|+||||++..++... ...=..+..++..... ...+-+...++.++.+.....+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45899999999999999999998752 2221234455443221 12222333334444332222333444444433322
Q ss_pred C-ceeeEEeCCCCC
Q 035647 284 G-KRFFLVLDDVWT 296 (938)
Q Consensus 284 ~-~~~LlVlDdv~~ 296 (938)
. +.=++++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234788888754
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.37 E-value=0.011 Score=56.85 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=29.9
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD 249 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 249 (938)
++.|+|.+|+||||++..++... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998752 22335677887766543
No 250
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.011 Score=60.49 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=50.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHccc--ccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDS--CVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
-|+|.++|+||.|||+|++++++.- |....|....-+.++.. .+.+..... ...-+..+++.|.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE--SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE--SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh--hhhHHHHHHHHHHHHHh
Confidence 4799999999999999999999974 34455655555555432 222222221 12234566777777777
Q ss_pred Ccee--eEEeCCC
Q 035647 284 GKRF--FLVLDDV 294 (938)
Q Consensus 284 ~~~~--LlVlDdv 294 (938)
++.. .+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 5543 4567888
No 251
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.35 E-value=0.04 Score=62.38 Aligned_cols=159 Identities=17% Similarity=0.123 Sum_probs=81.5
Q ss_pred CccccchHHHHHHHHHhhc---c-cCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLC---E-FGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 254 (938)
.++.|.+..++.+.+.... . ...+-...+-|.++|++|+|||.+|+.+++. ....| +-++.+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------h-
Confidence 4577877666665543211 0 0001134577999999999999999999985 22222 2222211 1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc--C---C---ch----hhhhhhccCCCCCEEEEEc
Q 035647 255 KAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY--S---K---WE----PFHNCLMHGLRGSKILVTT 322 (938)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~---~---~~----~l~~~l~~~~~gs~iivTt 322 (938)
. ..... .+...+.+.+...-...+++|++|+++.--. . + .. .+...+.....+.-||.||
T Consensus 296 ---~----~~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ---F----GGIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ---c----ccccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1 00000 0111111122212225789999999953100 0 0 01 1122222223344566677
Q ss_pred CChHHH-Hhc----ccCCeEecCCCChHHHHHHHHHhhcC
Q 035647 323 RNEKVV-RMM----ESTDVISIKELSEQECWWLFKRFAFF 357 (938)
Q Consensus 323 r~~~~~-~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~ 357 (938)
...... ..+ .-+..+.++.-+.++-.++|+.+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 654321 111 12457888888899999999887644
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.35 E-value=0.024 Score=68.82 Aligned_cols=179 Identities=13% Similarity=0.057 Sum_probs=90.4
Q ss_pred CccccchHHHHHHHHHhhcccCC-------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE-------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|.+..++++.+.+...-.. +-...+-|.++|++|+|||+||+.+++. .... .+.++...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~---~i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY---FISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe---EEEEecHH-----
Confidence 45889999999998876421000 0123467899999999999999999985 2222 22232211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc------C-----CchhhhhhhccC-CCCCEEE
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY------S-----KWEPFHNCLMHG-LRGSKIL 319 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~ii 319 (938)
+ ..... ....+.+...+.......+.+|++|++..-.. . ....+...+... ..+..++
T Consensus 248 -i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -I----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -H----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 11000 01111122222222345678999999843110 0 011233322221 2233444
Q ss_pred E-EcCChH-HHHhcc----cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 320 V-TTRNEK-VVRMME----STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 320 v-Ttr~~~-~~~~~~----~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
| ||.... +...+. -...+.+...+.++-.+++..+.-... ...... ...+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~~----l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDVD----LDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-CccccC----HHHHHHhCCCCC
Confidence 4 454332 111111 134677888888888888876542211 111112 344777777754
No 253
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.34 E-value=0.099 Score=55.34 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRI 253 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 253 (938)
.++=..+....+...+.. .+-|.|.|.+|+||||+|+.++.. ... ..+.|.+....+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~--l~~---~~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAAR--LNW---PCVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHH--HCC---CeEEEEecCCCChhhc
Confidence 344444556667777743 235999999999999999999885 221 2235555555444333
No 254
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.30 E-value=0.011 Score=62.80 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=54.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSA-----PNLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 279 (938)
.-+++-|+|.+|+||||||.+++.. ....-..++||+..+.++.. .+++++.+. ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5679999999999999999888765 22333567899877655542 344444321 12234455555555
Q ss_pred Hhhc-CceeeEEeCCC
Q 035647 280 ASIV-GKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv 294 (938)
...+ +..-++|+|.+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5554 45669999998
No 255
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.29 E-value=0.013 Score=61.15 Aligned_cols=133 Identities=24% Similarity=0.309 Sum_probs=74.6
Q ss_pred cccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc-cccccCCCeEEEE----EeCCCC-------
Q 035647 181 VRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND-SCVINNFDKRMWV----CVSDNF------- 248 (938)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~wv----~~~~~~------- 248 (938)
+-+|..+-.--.++|+. +.+..|.+.|.+|+|||.||.+..-. ...++.|..++-. .+++..
T Consensus 226 i~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 45577777777788864 37899999999999999999665432 2234445443321 222211
Q ss_pred --CHHHHHHHHHHHh---cCC-CCCcccHHHHHHHH----------HHhhcCc---eeeEEeCCCCCCCcCCchhhhhhh
Q 035647 249 --DEFRIAKAIIEAL---EGS-APNLGELQSLLQHI----------YASIVGK---RFFLVLDDVWTDDYSKWEPFHNCL 309 (938)
Q Consensus 249 --~~~~~~~~i~~~l---~~~-~~~~~~~~~~~~~l----------~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l 309 (938)
.+.-..+.|...+ ... ... ....+.+ ..+.+++ +-++|+|.+++-.+. .+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~----~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTil 372 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG----DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTIL 372 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc----hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHH
Confidence 1111223333222 211 111 1122222 1223444 458999999764433 345555
Q ss_pred ccCCCCCEEEEEcCChH
Q 035647 310 MHGLRGSKILVTTRNEK 326 (938)
Q Consensus 310 ~~~~~gs~iivTtr~~~ 326 (938)
-..+.||||+.|.-..+
T Consensus 373 tR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 373 TRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred HhccCCCEEEEcCCHHH
Confidence 66788999999887443
No 256
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.28 E-value=0.038 Score=52.36 Aligned_cols=124 Identities=20% Similarity=0.303 Sum_probs=72.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeC---------------------CCC---------------
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVS---------------------DNF--------------- 248 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~---------------------~~~--------------- 248 (938)
+-..+.|+|.+|.||||+.+.+|..++. -...+|+.-- |++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 4458999999999999999999986332 1233443200 000
Q ss_pred ------CHHHHHHH---HHHHhcCC-----CC-CcccHHHHHHHHHHhhcCceeeEEeCCCC-CCCc-CCchhhhhhhcc
Q 035647 249 ------DEFRIAKA---IIEALEGS-----AP-NLGELQSLLQHIYASIVGKRFFLVLDDVW-TDDY-SKWEPFHNCLMH 311 (938)
Q Consensus 249 ------~~~~~~~~---i~~~l~~~-----~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~-~~~~~l~~~l~~ 311 (938)
...++.+. .++.++.. .| +....++-.-.|.+.+-+++-+++=|.-- +-++ -.|+ +...|..
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHH
Confidence 11222222 33333322 11 22334444556777778899999999652 1122 2333 3333333
Q ss_pred -CCCCCEEEEEcCChHHHHhcc
Q 035647 312 -GLRGSKILVTTRNEKVVRMME 332 (938)
Q Consensus 312 -~~~gs~iivTtr~~~~~~~~~ 332 (938)
...|+.||++|.+.++-..+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 456999999999998877653
No 257
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.023 Score=55.26 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=61.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcC--CCCC----------cccH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN--FDEFRIAKAIIEALEG--SAPN----------LGEL 271 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~--~~~~----------~~~~ 271 (938)
-.+++|+|..|.|||||.+.++.-. ......+++.-... ...... ...++- +.+. ....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 4589999999999999999998742 22334343321110 001110 111110 0000 1112
Q ss_pred HHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccCCCCCEEEEEcCChHHHHh
Q 035647 272 QSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRM 330 (938)
Q Consensus 272 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~ 330 (938)
+...-.+...+-.++-++++|+.... +......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22223355666678889999997431 122223344444333335678888888766553
No 258
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.01 Score=67.32 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=59.8
Q ss_pred CCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 035647 203 QHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI 282 (938)
Q Consensus 203 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 282 (938)
.+..+++.+.|++|.||||||.-++++.- | .++=|++++..+...+-..|...+... ..+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~---------------s~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNH---------------SVL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhc---------------ccc
Confidence 35678999999999999999999998632 3 367788888877776666665554422 112
Q ss_pred --cCceeeEEeCCCCCCCcCCchhhhhhhc
Q 035647 283 --VGKRFFLVLDDVWTDDYSKWEPFHNCLM 310 (938)
Q Consensus 283 --~~~~~LlVlDdv~~~~~~~~~~l~~~l~ 310 (938)
.+++.-+|+|.++.......+.+.+.+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 1578889999995433223444544443
No 259
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.21 E-value=0.028 Score=52.76 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=59.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
.-.+++|+|..|.|||||++.+..-. ......+|+.-.. .+.- .++....+...-.+.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~-~~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGY-FEQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEE-EccCCHHHHHHHHHHHHHhc
Confidence 34589999999999999999998742 2234444442100 0000 00022223333345566667
Q ss_pred ceeeEEeCCCCC-CCcCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 285 KRFFLVLDDVWT-DDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 285 ~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
++-++++|+.-. -+......+...+... +..||++|.+.+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 888999999732 1222233344444333 347888888766554
No 260
>PHA02244 ATPase-like protein
Probab=96.21 E-value=0.021 Score=61.00 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-|.|+|.+|+|||+||+.+++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999985
No 261
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.21 E-value=0.017 Score=57.08 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=50.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCC---CCcccHHHHH-HHHHH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKAIIEALEGSA---PNLGELQSLL-QHIYA 280 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l~~ 280 (938)
+++|.++|+.|+||||.+.+++..... .-..+..++... .....+-++..++.++.+. ....+..+.. +.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 479999999999999999888875332 233466666543 2344566777788887542 1222222222 33333
Q ss_pred hhcCceeeEEeCCCC
Q 035647 281 SIVGKRFFLVLDDVW 295 (938)
Q Consensus 281 ~l~~~~~LlVlDdv~ 295 (938)
.-.++.=++++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322233478888764
No 262
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.20 E-value=0.015 Score=67.23 Aligned_cols=45 Identities=31% Similarity=0.490 Sum_probs=36.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998877432 2345689999999999999999763
No 263
>PRK06696 uridine kinase; Validated
Probab=96.19 E-value=0.006 Score=62.17 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 183 GRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|++-+++|.+.+.... .....+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36777888888876532 236789999999999999999999875
No 264
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.18 E-value=0.0036 Score=58.36 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc-ccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035647 182 RGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV-INNFDKRMWVCVSDNFDEFRIAKAIIEA 260 (938)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 260 (938)
||+-..++++.+.+..-.. ...-|.|+|.+|+||+++|+.+...... ...|.. +.+....
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc------------
Confidence 4666777777776654321 3346799999999999999988875221 112211 1111100
Q ss_pred hcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccC-CCCCEEEEEcCCh
Q 035647 261 LEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHG-LRGSKILVTTRNE 325 (938)
Q Consensus 261 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 325 (938)
. +.+.+ .+.--|+|+|+..-+.+....+...+... ....|+|.||+..
T Consensus 62 -----------~---~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 -----------A---ELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------H---HHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------H---HHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 11111 14555779999654444455566666543 5678999999853
No 265
>PTZ00494 tuzin-like protein; Provisional
Probab=96.17 E-value=0.44 Score=51.56 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=106.2
Q ss_pred ccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 176 INVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
.....++.|+.|-..+...|..-+ ...++++++.|.-|.||++|.+.....+. -..++|++... ++-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHH
Confidence 345678999988888888776542 35789999999999999999999887643 24677877764 45578
Q ss_pred HHHHHhcCCCCCcc-c-HH---HHHHHHHHhhcCceeeEEeCCCCCCC-cCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 256 AIIEALEGSAPNLG-E-LQ---SLLQHIYASIVGKRFFLVLDDVWTDD-YSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 256 ~i~~~l~~~~~~~~-~-~~---~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
.+.+.++.+..+.- + ++ +....-.....++.-+||+-==+-.+ ...+... -.|.....-|+|++----+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhch
Confidence 88999987643321 1 11 12222222234566666664221111 1112221 12444556788888766555443
Q ss_pred hc---ccCCeEecCCCChHHHHHHHHHhh
Q 035647 330 MM---ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 330 ~~---~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
.. ....-|-+++|+.++|.++-.+..
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 32 224578999999999999876653
No 266
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.038 Score=59.38 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=47.0
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHh
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
+++-++|+|++..-+....+.+...+.....++.+|++|.+.. +...+ .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4445666788865555555667666665445666777777654 33332 22568899999999999888654
No 267
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.15 E-value=0.0043 Score=69.48 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=40.5
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+++|-++.+++|++.|......-..+.+++.++|++|+||||||+.+++-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999984322112335679999999999999999999884
No 268
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.14 E-value=0.0091 Score=63.30 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=54.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSA-----PNLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 279 (938)
.-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++.+. ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 5679999999999999999988765 22334568899887766543 344444321 12223455555555
Q ss_pred Hhhc-CceeeEEeCCC
Q 035647 280 ASIV-GKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv 294 (938)
...+ +..-++|+|.+
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5544 45669999997
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.13 E-value=0.048 Score=54.36 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCceeeEEeCCCC-CCCcCCchhhhhhhccC--CCCCEEEEEcCChHHHHhcc
Q 035647 271 LQSLLQHIYASIVGKRFFLVLDDVW-TDDYSKWEPFHNCLMHG--LRGSKILVTTRNEKVVRMME 332 (938)
Q Consensus 271 ~~~~~~~l~~~l~~~~~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~~~~~~~ 332 (938)
.++-.-.+.+.+-..+-+|+-|+-- +-+.+.-+.+...+... ..|..||+.|.+..++..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3444556778888899999999762 11122223344444432 34789999999999998653
No 270
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.12 E-value=0.02 Score=61.52 Aligned_cols=58 Identities=22% Similarity=0.159 Sum_probs=42.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVI----NNFDKRMWVCVSDNFDEFRIAKAIIEALEG 263 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 263 (938)
...+.-|+|.+|+|||+|+.+++-..... +.-..++||+....|+.+.+.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 56788899999999999998886432221 1124789999999888887654 5666654
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.12 E-value=0.03 Score=54.81 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=61.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc--CC-------------CCCccc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE--GS-------------APNLGE 270 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~-------------~~~~~~ 270 (938)
-.+++|+|..|+|||||++.++.-.. .....+++.-. +.......+...++ .+ ......
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999987421 22333333211 11111011111111 00 011112
Q ss_pred HHHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 271 LQSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 271 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
.+...-.+.+.+-.++-++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 222333455666678899999998431 11222234444433234678888888877654
No 272
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.10 E-value=0.021 Score=58.77 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=54.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-------------------
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSA------------------- 265 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------- 265 (938)
...++.|+|.+|+|||++|.+++... ...=..++|++..+. ..++.+++ ++++-..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 56799999999999999999986541 123357888888653 44554443 2332110
Q ss_pred -CCcccHHHHHHHHHHhhcC-ceeeEEeCCCC
Q 035647 266 -PNLGELQSLLQHIYASIVG-KRFFLVLDDVW 295 (938)
Q Consensus 266 -~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 295 (938)
......+.....+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234556666666653 56689999983
No 273
>PRK09354 recA recombinase A; Provisional
Probab=96.10 E-value=0.016 Score=62.01 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=56.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSA-----PNLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 279 (938)
.-+++-|+|++|+||||||.+++... ...=..++||+....++.. .++.++.+. ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 56799999999999999999887652 2334678899888776652 345554321 12234555555555
Q ss_pred Hhhc-CceeeEEeCCC
Q 035647 280 ASIV-GKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv 294 (938)
..++ +..-++|+|.|
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5554 45669999998
No 274
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.09 E-value=0.053 Score=59.33 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=33.0
Q ss_pred HHHHHHhhcCceeeEEeCCCCCCCcCCch-hhhhhhcc-CCCCCEEEEEcCChHHHHhc
Q 035647 275 LQHIYASIVGKRFFLVLDDVWTDDYSKWE-PFHNCLMH-GLRGSKILVTTRNEKVVRMM 331 (938)
Q Consensus 275 ~~~l~~~l~~~~~LlVlDdv~~~~~~~~~-~l~~~l~~-~~~gs~iivTtr~~~~~~~~ 331 (938)
.-.+.+.+-+.++|+|||+--.+=...=+ .+...+.. ...|..+|+.|..+.+...+
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 34467778899999999987321111111 14444443 34566666666666665543
No 275
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.08 E-value=0.027 Score=58.05 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=53.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH---
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNF-DEFRIAKAIIEALEGS-------APNLGELQ--- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 272 (938)
+-+.++|.|.+|+|||||++++++. ...+| +.++++-+++.. .+.++.+.+.+.-... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4467899999999999999999986 44455 445566665543 3344555544321110 11111111
Q ss_pred --HHHHHHHHhh--c-CceeeEEeCCC
Q 035647 273 --SLLQHIYASI--V-GKRFFLVLDDV 294 (938)
Q Consensus 273 --~~~~~l~~~l--~-~~~~LlVlDdv 294 (938)
...-.+.+++ + ++..|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1233355666 3 88999999999
No 276
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.08 E-value=0.024 Score=61.02 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=42.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVI---N-NFDKRMWVCVSDNFDEFRIAKAIIEALEG 263 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 263 (938)
...++-|+|.+|+|||+||..++-..... + .-..++||+....++.+++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 56789999999999999998877532211 1 11369999999988887764 55666653
No 277
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.017 Score=62.54 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=51.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN-FDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..+++.++|+.|+||||++.+++.....+.....+..++.... ....+-+....+.++.......+..+....+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 3469999999999999999999875221212234555553321 233445555556666543322222233333333 33
Q ss_pred CceeeEEeCCCCC
Q 035647 284 GKRFFLVLDDVWT 296 (938)
Q Consensus 284 ~~~~LlVlDdv~~ 296 (938)
+ +-++++|....
T Consensus 215 ~-~DlVLIDTaG~ 226 (374)
T PRK14722 215 N-KHMVLIDTIGM 226 (374)
T ss_pred C-CCEEEEcCCCC
Confidence 4 45677999843
No 278
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.04 E-value=0.022 Score=60.14 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=46.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..++++|+|.+|+||||++..++.....+..-..+..|+..... .....+....+.++.......+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 46799999999999999999988753222111345556544321 112222333344443322223333444434333 3
Q ss_pred CceeeEEeCCC
Q 035647 284 GKRFFLVLDDV 294 (938)
Q Consensus 284 ~~~~LlVlDdv 294 (938)
+ .=++++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 2 347777754
No 279
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.03 E-value=0.027 Score=54.53 Aligned_cols=122 Identities=14% Similarity=0.175 Sum_probs=65.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc---cccccC---C--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-------Cccc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND---SCVINN---F--DKRMWVCVSDNFDEFRIAKAIIEALEGSAP-------NLGE 270 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~---~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~ 270 (938)
-.+++|+|+.|+|||||.+.+..+ ..+... | ..+.|+. + .+.++.++.... ....
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCH
Confidence 458999999999999999988642 111111 1 1133331 1 345566653211 1122
Q ss_pred HHHHHHHHHHhhcCc--eeeEEeCCCCCC-CcCCchhhhhhhccC-CCCCEEEEEcCChHHHHhcccCCeEec
Q 035647 271 LQSLLQHIYASIVGK--RFFLVLDDVWTD-DYSKWEPFHNCLMHG-LRGSKILVTTRNEKVVRMMESTDVISI 339 (938)
Q Consensus 271 ~~~~~~~l~~~l~~~--~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~~~~~~~~~~~~~l 339 (938)
.+...-.+...+-.+ +-++++|+.-.. +......+...+... ..|..||++|.+...... .+.++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 223333455555566 789999987321 122223344433331 247788899988776542 3444444
No 280
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.025 Score=67.17 Aligned_cols=123 Identities=12% Similarity=0.174 Sum_probs=77.1
Q ss_pred CccccchHHHHHHHHHhhcccCC-CC-CceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE-EQ-HAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~-~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
..++|-++.+..|.+.+...... .+ .......+.|+.|+|||-||++++.- +-+..+..+-++.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhhhh-------
Confidence 35789999999999988765421 11 25778899999999999999999875 444445566665554221
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhcCcee-eEEeCCCCCCCcCCchhhhhhhccC
Q 035647 257 IIEALEGSAPNLGELQSLLQHIYASIVGKRF-FLVLDDVWTDDYSKWEPFHNCLMHG 312 (938)
Q Consensus 257 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 312 (938)
+.+..+.+. ... ..+....|.+.++.++| +|+||||+..++.....+...+..+
T Consensus 633 vskligsp~-gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPP-GYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCc-ccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 333333322 111 11223356666666665 8889999765555555455555443
No 281
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.02 E-value=0.08 Score=64.33 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=91.6
Q ss_pred CccccchHHHHHHHHHhhcccCC-------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE-------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|.+..++.+.+.+.-.-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------
Confidence 45778888877777765321000 1123456899999999999999999986 22222 222211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCC------Cc-CC-----chhhhhhhcc--CCCCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTD------DY-SK-----WEPFHNCLMH--GLRGS 316 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~------~~-~~-----~~~l~~~l~~--~~~gs 316 (938)
+++...-+ ..+..+..+.. .-...+.+|+||+++.- .. .. ...+...+.. ...+.
T Consensus 522 ----~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111110 11112222222 22356899999998421 00 00 1112222221 12344
Q ss_pred EEEEEcCChHHHHh-c----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 317 KILVTTRNEKVVRM-M----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 317 ~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
-||.||........ + .-...+.++..+.++-.++|+.+..+.. ....-++. .+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l~----~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDLE----ELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHcCCCC
Confidence 56667765543221 1 1245788888888888889876653221 11222233 3666666543
No 282
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.00 E-value=0.026 Score=60.43 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=40.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVI---N-NFDKRMWVCVSDNFDEFRIAKAIIEALE 262 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 262 (938)
...++.|+|.+|+|||||+..++...... + .-..++|++....++...+ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 57799999999999999999887532211 1 1136799998887777653 44555554
No 283
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.98 E-value=0.058 Score=52.03 Aligned_cols=117 Identities=14% Similarity=0.030 Sum_probs=62.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEE-------EeCCCCCHHHHHHHHHHHhcC-CCCCcccHHHHHHH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWV-------CVSDNFDEFRIAKAIIEALEG-SAPNLGELQSLLQH 277 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~ 277 (938)
-.+++|+|..|.|||||++.++..... ....+++ .+.+..... ...+.+.+.. ........+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHHH
Confidence 458999999999999999999875221 1222211 112222111 0122222221 12223333444445
Q ss_pred HHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 278 IYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 278 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
+.+.+-.++-++++|+.-.. +......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 56666678889999987321 122222343444333 457888888776543
No 284
>PRK13695 putative NTPase; Provisional
Probab=95.98 E-value=0.0082 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|+|.+|+|||||++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998775
No 285
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.96 E-value=0.038 Score=53.62 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=57.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEE------eCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVC------VSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY 279 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 279 (938)
-.+++|+|..|+|||||.+.+..-. ......+++. +.+... ....+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 4589999999999999999998742 2223333321 111110 222233344455
Q ss_pred HhhcCceeeEEeCCCCCC-CcCCchhhhhhhccC-CC-CCEEEEEcCChHHHH
Q 035647 280 ASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHG-LR-GSKILVTTRNEKVVR 329 (938)
Q Consensus 280 ~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~~~~ 329 (938)
+.+-.++-++++|+.-.. +......+...+... .. +..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666678889999997321 111222233333321 12 357888888766544
No 286
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.89 E-value=0.0053 Score=59.19 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=32.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccc-cCCCeEEEEEeCCCCC
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVI-NNFDKRMWVCVSDNFD 249 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~ 249 (938)
..++.+.|+.|+|||.||+.++.- .. +.....+-++++...+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccc
Confidence 568899999999999999999885 33 4455667777665444
No 287
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.87 E-value=0.025 Score=54.43 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=64.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN--FDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
-.+++|+|..|+|||||.+.++.. .......+++.-... .+..... .+.++- ..+....+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~-~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR---RAGIAM-VYQLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH---hcCeEE-EEecCHHHHHHHHHHHHHh
Confidence 358999999999999999999874 233445555532111 1111111 011110 0112223333444556666
Q ss_pred CceeeEEeCCCCC-CCcCCchhhhhhhccC-CCCCEEEEEcCChHHHH
Q 035647 284 GKRFFLVLDDVWT-DDYSKWEPFHNCLMHG-LRGSKILVTTRNEKVVR 329 (938)
Q Consensus 284 ~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~~~~ 329 (938)
..+-++++|+.-. -+......+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7889999999732 1222223344444332 34678888888876443
No 288
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.83 E-value=0.11 Score=52.24 Aligned_cols=229 Identities=12% Similarity=0.104 Sum_probs=126.6
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccc----ccccCCCeEEEEEeCCC--------
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDS----CVINNFDKRMWVCVSDN-------- 247 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~-------- 247 (938)
.+.++++....+..... .....-..++|++|.||-|.+..+.+.- -.+-.-+..-|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 35666666666665542 2356778999999999999876666541 01112234444433221
Q ss_pred --C-----------CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCcee-eEEeCCCCCCCcCCchhhhhhhccCC
Q 035647 248 --F-----------DEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRF-FLVLDDVWTDDYSKWEPFHNCLMHGL 313 (938)
Q Consensus 248 --~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 313 (938)
. ..+-+.+++++.++...+- + .-..+.| ++|+-.++.-..++-..++.......
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qi----e--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI----E--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcch----h--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 1133444455544422110 0 0012344 56666664433455556777776667
Q ss_pred CCCEEEEEcCChH--HHHhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhh
Q 035647 314 RGSKILVTTRNEK--VVRMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSL 391 (938)
Q Consensus 314 ~gs~iivTtr~~~--~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~ 391 (938)
..+|+|+...+.. +.+.-...-.+.+...+++|-...+...+...+-. . + .+++.+|+++++|+---...+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-l-p--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-L-P--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-C-c--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 7889888665421 22221234578999999999999988876444321 1 1 678899999999886533333333
Q ss_pred hcCC----------CCHHHHHHHHhhhcccch--hhhchhhhhhhhcccCC
Q 035647 392 LRFK----------RTREEWESVLNSEMWWFE--ELEKYLFAPLLLSYNDL 430 (938)
Q Consensus 392 l~~~----------~~~~~w~~~l~~~~~~~~--~~~~~i~~~l~~sy~~L 430 (938)
++-+ -..-+|+-.+.+.....- +....+..+-..-|+-|
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 3221 123578887765544332 22233444444445444
No 289
>PRK05973 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.065 Score=54.32 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=74.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----------CCcccHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSA-----------PNLGELQS 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~ 273 (938)
+..++.|.|.+|+|||++|.+++...- ..=..+++++.... ..++...+. +++.+. .+....+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~ 137 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADY 137 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHH
Confidence 456899999999999999998876522 22345777776653 444444433 222211 01112233
Q ss_pred HHHHHHHhhcCceeeEEeCCCCCC----CcCCchhhhhhhcc--CCCCCEEEEEcCChHHHHh-cccCCeEecCCCChHH
Q 035647 274 LLQHIYASIVGKRFFLVLDDVWTD----DYSKWEPFHNCLMH--GLRGSKILVTTRNEKVVRM-MESTDVISIKELSEQE 346 (938)
Q Consensus 274 ~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~~~l~~~l~~--~~~gs~iivTtr~~~~~~~-~~~~~~~~l~~L~~~e 346 (938)
....+... .+.-++|+|.+..- +......+...+.. ...|.-||+|++...-... ....+...==.++..-
T Consensus 138 ii~~l~~~--~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR~~~~~ 215 (237)
T PRK05973 138 IIARLASA--PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDVRLPNPL 215 (237)
T ss_pred HHHHHHHh--hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhcCCCChh
Confidence 33333331 23469999988421 11111221111221 2468888998874322111 1111111111233444
Q ss_pred HHHHHHHhhcCCC
Q 035647 347 CWWLFKRFAFFGR 359 (938)
Q Consensus 347 a~~lf~~~~~~~~ 359 (938)
-..||.+..|-..
T Consensus 216 d~~~f~~~~~~~~ 228 (237)
T PRK05973 216 DLSLFDKACFLNN 228 (237)
T ss_pred hHHHhhhhheecC
Confidence 5677777766543
No 290
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.81 E-value=0.0015 Score=75.77 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCcccEEeecCCccccCCCc-CCC-CCCCccEEEEcCCcchHHhh
Q 035647 867 MPQLISLELGSCSKLKSLPV-DLL-RSQKLKMLEIYNCPILKERF 909 (938)
Q Consensus 867 l~~L~~L~l~~c~~l~~lp~-~l~-~l~~L~~L~l~~c~~l~~~~ 909 (938)
+..|+.|++..|...+.--. ... .+..+..+++.+|+.+....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 34489999999876553211 111 16778889999998776543
No 291
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.80 E-value=0.017 Score=57.59 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=57.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH---HHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK---AIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
.+|.|+|+.|+||||++..++.. ........+++- .+... .... .+..+-.. ..+.....+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E--~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIE--FVHESKRSLINQREV----GLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCcc--ccccCccceeeeccc----CCCccCHHHHHHHHhc
Confidence 47899999999999999988764 222333333332 22111 1000 01100000 0111223455667777
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
..+=.+++|++.+ .+.+..... ....|-.++.|+....+..
T Consensus 73 ~~pd~ii~gEird--~e~~~~~l~---~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRD--LETIRLALT---AAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCC--HHHHHHHHH---HHHcCCEEEEEecCCcHHH
Confidence 6778999999943 222222222 2234556787877665443
No 292
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.79 E-value=0.012 Score=65.28 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=82.6
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH-
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI- 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i- 257 (938)
..++||++.++.+...+.... -|.|.|++|+|||++|+.+.........|.. +.+.-. +..+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHH
Confidence 358999999999999887543 4899999999999999999975222223321 111100 112222211
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcC---ceeeEEeCCCCCCCcCCchhhhhhhccCC---------CCCEEEEEcCCh
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVG---KRFFLVLDDVWTDDYSKWEPFHNCLMHGL---------RGSKILVTTRNE 325 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTtr~~ 325 (938)
+..... .. ...+...+ ..-++++|+++.........+...+.... -..++++++.++
T Consensus 88 i~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 88 IQALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred Hhhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111100 00 00011111 12289999998766555555666553221 123455555542
Q ss_pred HHH------Hhccc-CCeEecCCCChHH-HHHHHHHh
Q 035647 326 KVV------RMMES-TDVISIKELSEQE-CWWLFKRF 354 (938)
Q Consensus 326 ~~~------~~~~~-~~~~~l~~L~~~e-a~~lf~~~ 354 (938)
-.. ..+.. ...+.+++++.++ -.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 111 11111 3378888997544 47777653
No 293
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.12 Score=60.27 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=99.5
Q ss_pred CccccchHHHHH---HHHHhhcccCC---CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNI---LKSKLLCEFGE---EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~---l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.++.|-++..++ +++.|..+... +..-++=+.++|++|.|||-||++++-... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 457787765555 55555433210 123467899999999999999999998633 334555442
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCCcC-----------Cch-hhhhhhcc---CC--C
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDDYS-----------KWE-PFHNCLMH---GL--R 314 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~-----------~~~-~l~~~l~~---~~--~ 314 (938)
+..+.+.+.. . ..+..+...- ...++.+.+|++...... .-+ .+...+.. .. .
T Consensus 379 ---EFvE~~~g~~--a----srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--A----SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc--h----HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2233332211 1 1222222222 256889999988321100 011 13333332 11 2
Q ss_pred CCEEEEEcCChHHHHh--c--c-cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhH
Q 035647 315 GSKILVTTRNEKVVRM--M--E-STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLA 384 (938)
Q Consensus 315 gs~iivTtr~~~~~~~--~--~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (938)
+.-++-+|...++... + + -+..+.++.=+.....++|.-++-.... ..+..++++ |+....|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHH
Confidence 2233345554443322 1 1 2567888888888899999888744332 234455556 88888887744
No 294
>PTZ00035 Rad51 protein; Provisional
Probab=95.73 E-value=0.061 Score=58.12 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=40.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVI----NNFDKRMWVCVSDNFDEFRIAKAIIEALEG 263 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 263 (938)
...++.|+|.+|+|||||+..++-..... ..=..++|++....++.+.+ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 56799999999999999998887542211 11245779998877776663 445555543
No 295
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.73 E-value=0.063 Score=57.86 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=41.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVIN----NFDKRMWVCVSDNFDEFRIAKAIIEALE 262 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 262 (938)
...++-|+|.+|+|||+++.+++....... .=..++||+....++.+.+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 467899999999999999998876532211 11379999999888877654 4455444
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.71 E-value=0.017 Score=57.30 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=53.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh---
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI--- 282 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 282 (938)
-+++.|.|.+|+||||+++.+..... ..=..++++ .... .....+.+..+. ....+..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~--~~g~~v~~~-apT~----~Aa~~L~~~~~~---~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALE--AAGKRVIGL-APTN----KAAKELREKTGI---EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHH--HTT--EEEE-ESSH----HHHHHHHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHH--hCCCeEEEE-CCcH----HHHHHHHHhhCc---chhhHHHHHhcCCcccccc
Confidence 35788999999999999998876422 221223333 3322 222223333321 1122221111000000
Q ss_pred ---cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHH
Q 035647 283 ---VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVV 328 (938)
Q Consensus 283 ---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 328 (938)
..++-+||+|++..-+...+..+...... .|+|+|+.--..+..
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQLP 134 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHH
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchhc
Confidence 12345999999965444444444443333 478888877655443
No 297
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.031 Score=54.36 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc--CCC----CC--------ccc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE--GSA----PN--------LGE 270 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~----~~--------~~~ 270 (938)
.-.+++|+|..|.|||||++.++... ......+++.-....... ..+...++ .+. +. ...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34589999999999999999998742 223344443211100000 00111111 000 00 111
Q ss_pred HHHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccC-CCCCEEEEEcCChHHHH
Q 035647 271 LQSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHG-LRGSKILVTTRNEKVVR 329 (938)
Q Consensus 271 ~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~~~~ 329 (938)
.+...-.+...+-.++-++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 222333466667788999999998321 112222344444332 23678999998876555
No 298
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0079 Score=55.19 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.--|+|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999875
No 299
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.05 Score=56.36 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=57.1
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHH-hcCC-CCCcccHH---HHHHHH
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEA-LEGS-APNLGELQ---SLLQHI 278 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~---~~~~~l 278 (938)
+..+++=|+|+.|+||||+|.+++-. ....-..++|++....++.+.+.. ++.. +..- .....+.+ +.++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46789999999999999999887765 333444889999999888876643 3333 2211 11222222 334444
Q ss_pred HHhhcCceeeEEeCCC
Q 035647 279 YASIVGKRFFLVLDDV 294 (938)
Q Consensus 279 ~~~l~~~~~LlVlDdv 294 (938)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4443344669999998
No 300
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.61 E-value=0.043 Score=53.44 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=60.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC--CCCHHHHHHHHHHHhcC--CCCC----------cccH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD--NFDEFRIAKAIIEALEG--SAPN----------LGEL 271 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~----------~~~~ 271 (938)
-.+++|+|..|+|||||.+.++.-. ......+++.-.. ....... ...++- +.+. ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 3589999999999999999998742 2223333332110 0011111 111110 0000 1112
Q ss_pred HHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhcc-CCCCCEEEEEcCChHHHH
Q 035647 272 QSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMH-GLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 272 ~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~ 329 (938)
+...-.+...+-.++-++++|+.... +......+...+.. ...|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22333455666677889999998431 11222223333332 123678888888876554
No 301
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.61 E-value=0.067 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|.|+|.+|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999875
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.12 Score=56.78 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=51.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccccccc--CCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVIN--NFDKRMWVCVSDNF-DEFRIAKAIIEALEGSAPNLGELQSLLQHIYAS 281 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 281 (938)
..++|.++|..|+||||.+..++....... .-..+..+++.... .....+...++.++.+.......++....+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 467999999999999999998886522211 11345555544321 122234455555554432333334444444433
Q ss_pred hcCceeeEEeCCCCC
Q 035647 282 IVGKRFFLVLDDVWT 296 (938)
Q Consensus 282 l~~~~~LlVlDdv~~ 296 (938)
...-++++|-+..
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 4456899999854
No 303
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.082 Score=53.61 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=66.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccc-----cc------cCC---CeEEEEEeCC------CCCH---------------
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSC-----VI------NNF---DKRMWVCVSD------NFDE--------------- 250 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~~~------~~~~--------------- 250 (938)
-.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.=.. +.++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999987210 00 001 2355553111 1111
Q ss_pred -------HHHHHHHHHHhcCC------CCCcccHHHHHHHHHHhhcCceeeEEeCCCCC-CCcCCchhhhhhhcc-CCCC
Q 035647 251 -------FRIAKAIIEALEGS------APNLGELQSLLQHIYASIVGKRFFLVLDDVWT-DDYSKWEPFHNCLMH-GLRG 315 (938)
Q Consensus 251 -------~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~g 315 (938)
.+...+.++.++.. .......+.-.-.+.+.|...+=|++||.--. -|...-..+...+.. ...|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 13334444444422 11222223333446677889999999998632 111111223333332 1228
Q ss_pred CEEEEEcCChHHHH
Q 035647 316 SKILVTTRNEKVVR 329 (938)
Q Consensus 316 s~iivTtr~~~~~~ 329 (938)
..||++|.+-....
T Consensus 190 ~tIl~vtHDL~~v~ 203 (254)
T COG1121 190 KTVLMVTHDLGLVM 203 (254)
T ss_pred CEEEEEeCCcHHhH
Confidence 89999999865444
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.58 E-value=0.079 Score=54.52 Aligned_cols=49 Identities=12% Similarity=0.314 Sum_probs=35.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
.-.++.|.|.+|+|||++|.++.... -..-..++||+... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 56799999999999999998876641 12346788888765 455555543
No 305
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.56 E-value=0.046 Score=52.52 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=43.7
Q ss_pred EEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHHhhcCc
Q 035647 209 ISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN---LGELQSLLQHIYASIVGK 285 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~~ 285 (938)
+.|.|.+|+|||++|.+++.. ....++++.-...++. ++...|..--...... .+....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999998764 2245677766665544 3444433322212111 11112233333221 2 3
Q ss_pred eeeEEeCCC
Q 035647 286 RFFLVLDDV 294 (938)
Q Consensus 286 ~~LlVlDdv 294 (938)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999987
No 306
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.02 Score=62.49 Aligned_cols=53 Identities=28% Similarity=0.274 Sum_probs=38.1
Q ss_pred CccccchH---HHHHHHHHhhcccCC---CCCceEEEEEEecCCChHHHHHHHHHcccc
Q 035647 179 SEVRGRDE---EMNILKSKLLCEFGE---EQHAIQIISMVGMGGIGKTTLAQFVYNDSC 231 (938)
Q Consensus 179 ~~~~Gr~~---~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 231 (938)
.++-|-|+ |+++|++.|.++..- +..=++-|.++|++|.|||-||++++-...
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 34667655 677788888654310 122367899999999999999999998643
No 307
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.026 Score=51.90 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=32.5
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGS 264 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 264 (938)
+|.|-|.+|+||||+|+.+++.... -.| +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl-------~~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL-------KLV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC-------cee------eccHHHHHHHHHcCCC
Confidence 6899999999999999999985221 112 2336788888887754
No 308
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.045 Score=60.90 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=59.5
Q ss_pred CccccchHHHHHHHHHhhcccCC------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.++-|.+..+.++.+++..-..+ +=...+-|.++|++|.|||.||++++.... -.| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cce-----Eeecch-----
Confidence 46788999998888877653221 123567899999999999999999998622 222 333221
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVW 295 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 295 (938)
+|.+.+.+ .+.+.+.+...+.-...++++++|+++
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 12222221 111222222333334679999999983
No 309
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.53 E-value=0.082 Score=57.09 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=41.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINN----FDKRMWVCVSDNFDEFRIAKAIIEALE 262 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 262 (938)
...++-|+|.+|+|||++|.+++........ =..++||+....++.+.+.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 5678999999999999999988764222111 14799999998888776653 444444
No 310
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.075 Score=59.39 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=48.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD-EFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
.+++.++|++|+||||++..++........-..+..|+...... ....+....+.++.......+..+....+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999988876422112224566666543211 11222233333443322222333444444432 2
Q ss_pred ceeeEEeCCCCC
Q 035647 285 KRFFLVLDDVWT 296 (938)
Q Consensus 285 ~~~LlVlDdv~~ 296 (938)
..=++|+|....
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 356889997743
No 311
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.49 E-value=0.014 Score=56.32 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=43.0
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccH---HHHHHHHHHhhcC
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGEL---QSLLQHIYASIVG 284 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~l~~ 284 (938)
++.|.|.+|+||||+|..++... . ..++++.-... ...+....|..........-..+ ..+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~- 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA- 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC-
Confidence 68999999999999999998641 1 12344443333 33344455543333221111111 123333433333
Q ss_pred ceeeEEeCCC
Q 035647 285 KRFFLVLDDV 294 (938)
Q Consensus 285 ~~~LlVlDdv 294 (938)
+.-++++|.+
T Consensus 76 ~~~~VlID~L 85 (170)
T PRK05800 76 PGRCVLVDCL 85 (170)
T ss_pred CCCEEEehhH
Confidence 2337899987
No 312
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.44 E-value=0.091 Score=50.14 Aligned_cols=119 Identities=17% Similarity=0.058 Sum_probs=61.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEE---EEEeCCCCCHHHHHHHHH---HHhcCC----CCCcc----cH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRM---WVCVSDNFDEFRIAKAII---EALEGS----APNLG----EL 271 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~---~~l~~~----~~~~~----~~ 271 (938)
...|-|++-.|.||||.|..++-..- ...+ .+. |+.-.........+.... .+.+.. ..+.. ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL-GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH-HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 45788888899999999977765421 1222 222 333222223333333220 000110 00111 12
Q ss_pred HHHHHHHHHhhcCcee-eEEeCCCCC---CCcCCchhhhhhhccCCCCCEEEEEcCChH
Q 035647 272 QSLLQHIYASIVGKRF-FLVLDDVWT---DDYSKWEPFHNCLMHGLRGSKILVTTRNEK 326 (938)
Q Consensus 272 ~~~~~~l~~~l~~~~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 326 (938)
.+..+..++.+...+| |+|||.+-. -..-..+.+...+.....+..||+|-|...
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 2233444455555555 999999821 112333456666666666789999999763
No 313
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.00093 Score=66.41 Aligned_cols=83 Identities=23% Similarity=0.190 Sum_probs=49.3
Q ss_pred CccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCC
Q 035647 711 LDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCN 790 (938)
Q Consensus 711 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 790 (938)
...+.+.++|+..+|.+.+ ......++.|+.|.|+-|.+++ +.. +..|++|+.|+|..|.
T Consensus 15 ~sdl~~vkKLNcwg~~L~D------------------Isic~kMp~lEVLsLSvNkIss-L~p-l~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDD------------------ISICEKMPLLEVLSLSVNKISS-LAP-LQRCTRLKELYLRKNC 74 (388)
T ss_pred hhHHHHhhhhcccCCCccH------------------HHHHHhcccceeEEeecccccc-chh-HHHHHHHHHHHHHhcc
Confidence 3456666777776666652 1233456777777777777766 422 5567777777777664
Q ss_pred CC--CCCCCCCCCCCccceeecccc
Q 035647 791 NC--EIMPSLGKLPSLEILQIIGMR 813 (938)
Q Consensus 791 ~~--~~l~~l~~l~~L~~L~L~~~~ 813 (938)
+. ..+.-+.++|+|+.|-|..|+
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCC
Confidence 22 122235566666666666554
No 314
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.38 E-value=0.059 Score=62.97 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=44.7
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD 246 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 246 (938)
....++|....++++.+.+..-.. ...-|.|+|..|+|||++|+.+.+... ..-...+.|++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~ 257 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAA 257 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCC
Confidence 345799999999998887754322 334578999999999999999987521 1112345555554
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.066 Score=60.10 Aligned_cols=89 Identities=16% Similarity=0.092 Sum_probs=46.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN-FDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..++|+|+|.+|+||||++.+++.....+.....+..++.... ....+.+....+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 4579999999999999999888764222211234555544221 111222222233333222222233333333333 22
Q ss_pred CceeeEEeCCCC
Q 035647 284 GKRFFLVLDDVW 295 (938)
Q Consensus 284 ~~~~LlVlDdv~ 295 (938)
..=+||+|...
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35588999884
No 316
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.024 Score=55.02 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999986
No 317
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.35 E-value=0.086 Score=53.81 Aligned_cols=49 Identities=20% Similarity=0.132 Sum_probs=32.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
...++.|.|.+|+||||+|.+++.... +.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345999999999999999877665421 122 4566776433 455655555
No 318
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.34 E-value=0.1 Score=55.04 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=37.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEAL 261 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 261 (938)
.-.++.|.|.+|+||||++.+++...- ..+=..++|+++.. +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 345889999999999999998877521 12135688888766 4556666665543
No 319
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.31 E-value=0.036 Score=59.86 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 181 VRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++|+...++++.+.+..-.. ...-|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776654322 3345899999999999999998764
No 320
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.31 E-value=0.039 Score=59.64 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=42.6
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD 246 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 246 (938)
.++|+...++++.+.+..-.. ...-|.|+|..|+||+++|+.+..... ..-...+.|++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~ 67 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAA 67 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCC
Confidence 589999999988888764432 334689999999999999999876311 1112345555554
No 321
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.31 E-value=0.005 Score=61.32 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=45.5
Q ss_pred ccCCCcccEEeecCC--CCCcccchhhhcccCCCeEEeCCccccccC--ccCCCCCCCCcCCceEecC
Q 035647 605 CCELCNLQTIEIEEC--SNLRRLPQRIGKLVNLRHLIFVDVYLDYMP--KGIERLTCLRTLSEFVVSG 668 (938)
Q Consensus 605 i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~~ 668 (938)
+-.|++|+.|.++.| .....++.-..++++|++|++++|++.-+- .....+.+|..|+++.+..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 446789999999998 544456666677899999999999855321 1255667777777766543
No 322
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.31 E-value=0.015 Score=57.99 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=45.2
Q ss_pred cccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC----CCchhhhccCccEEEEeCCC
Q 035647 715 KNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA----LPSWVVLLNKLKKLYLTHCN 790 (938)
Q Consensus 715 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~L~~~~ 790 (938)
.+|+.+.+.+|.+..-+ ....+...+..+++|+.|+|..|.++.. +-..+...+.|+.|.+.+|.
T Consensus 185 ~~lk~vki~qNgIrpeg-----------v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 185 ENLKEVKIQQNGIRPEG-----------VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred cCceeEEeeecCcCcch-----------hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 46677777777665210 0111233455567777777777766541 11112244667888888775
Q ss_pred CCCC-----CCCC--CCCCCccceeeccc
Q 035647 791 NCEI-----MPSL--GKLPSLEILQIIGM 812 (938)
Q Consensus 791 ~~~~-----l~~l--~~l~~L~~L~L~~~ 812 (938)
.... +..+ ...|+|..|...++
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchh
Confidence 3321 1111 12456666666543
No 323
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.31 E-value=0.012 Score=53.92 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 035647 209 ISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~ 229 (938)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 324
>PRK14974 cell division protein FtsY; Provisional
Probab=95.28 E-value=0.077 Score=56.96 Aligned_cols=89 Identities=18% Similarity=0.102 Sum_probs=46.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCC---CcccHHH-HHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD--EFRIAKAIIEALEGSAP---NLGELQS-LLQHI 278 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~-~~~~l 278 (938)
+..+|.++|++|+||||++.+++.... ...+ .++.+.. +.+. ....+...++.++.... ...+... ..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 478999999999999998888876422 1223 3334432 2222 22334455666654321 1112112 22222
Q ss_pred HHhhcCceeeEEeCCCCC
Q 035647 279 YASIVGKRFFLVLDDVWT 296 (938)
Q Consensus 279 ~~~l~~~~~LlVlDdv~~ 296 (938)
........=++++|-...
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222122233899998854
No 325
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.039 Score=60.24 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...++.++|.+|+||||++.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 326
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.17 Score=58.64 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=73.7
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
...+.+.++|++|.|||.||+++++. ....|-.+.+- .++...- ......+.+......+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~~-------------~l~sk~v-----Gesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKGS-------------ELLSKWV-----GESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeCH-------------HHhcccc-----chHHHHHHHHHHHHHc
Confidence 35668999999999999999999994 33344222111 1111100 1111222223333335
Q ss_pred CceeeEEeCCCCC-----CCc------CCchhhhhhhcc--CCCCCEEEEEcCChHHHHhc-----ccCCeEecCCCChH
Q 035647 284 GKRFFLVLDDVWT-----DDY------SKWEPFHNCLMH--GLRGSKILVTTRNEKVVRMM-----ESTDVISIKELSEQ 345 (938)
Q Consensus 284 ~~~~LlVlDdv~~-----~~~------~~~~~l~~~l~~--~~~gs~iivTtr~~~~~~~~-----~~~~~~~l~~L~~~ 345 (938)
..++.|++|++.. ... .....+...+.. ...+..||-||......... .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999832 110 112223333321 22343455566544333211 12558888899999
Q ss_pred HHHHHHHHhhc
Q 035647 346 ECWWLFKRFAF 356 (938)
Q Consensus 346 ea~~lf~~~~~ 356 (938)
+..+.|+.+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 327
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.27 E-value=0.053 Score=52.80 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998875
No 328
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.24 E-value=0.067 Score=59.44 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888765
No 329
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.043 Score=53.71 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=60.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc--CCCC----C----------cc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE--GSAP----N----------LG 269 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~----~----------~~ 269 (938)
-.+++|+|..|+|||||++.++... ......+.+.-....+...-.....+.+. .+.+ . ..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 4589999999999999999998641 22333343321100000000000011111 0000 0 11
Q ss_pred cHHHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccC-C-CCCEEEEEcCChHHHH
Q 035647 270 ELQSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHG-L-RGSKILVTTRNEKVVR 329 (938)
Q Consensus 270 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~-~gs~iivTtr~~~~~~ 329 (938)
..+...-.+...+-..+-++++|+.-.. |......+...+... . .|..||++|.+.+...
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1222233455666678899999987321 122222344434332 2 2567888888766554
No 330
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.012 Score=34.82 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=8.4
Q ss_pred CCeEEeCCccccccCccC
Q 035647 635 LRHLIFVDVYLDYMPKGI 652 (938)
Q Consensus 635 L~~L~l~~~~l~~lp~~i 652 (938)
|++|++++|.++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 331
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.17 E-value=0.055 Score=65.25 Aligned_cols=135 Identities=15% Similarity=0.133 Sum_probs=72.6
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
..++|+...++.+.+.+..-.. ...-|.|+|..|+|||++|+.+.+... ..-...+.+++.... ...+...+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC-hhHhhhhhc
Confidence 4689999998888776653321 334689999999999999999987521 112344555555432 111111111
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEcCCh
Q 035647 259 EALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTTRNE 325 (938)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~~ 325 (938)
........... ......+ -....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11000000000 0011111 11234569999996544444445555553321 245888888653
No 332
>PRK06547 hypothetical protein; Provisional
Probab=95.16 E-value=0.025 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.4
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+|+|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999875
No 333
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.036 Score=54.56 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=43.2
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHh
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE--GSAPNLGELQSLLQHIYAS 281 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~ 281 (938)
.++.+|+|.|.+|+||||+|+.++.. ..... +.-++....... .-.....+... -..+..-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk~-~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYKD-QSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeeccccccc-hhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 36789999999999999999999985 33231 222221111110 00001111111 1223444566677777777
Q ss_pred hcCce
Q 035647 282 IVGKR 286 (938)
Q Consensus 282 l~~~~ 286 (938)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77777
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.15 E-value=0.015 Score=46.55 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 335
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.15 E-value=0.057 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=18.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..|.|.|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36899999999999999999885
No 336
>PRK07667 uridine kinase; Provisional
Probab=95.14 E-value=0.026 Score=55.97 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 188 MNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++.|.+.+.... +...+|+|-|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345555554322 24589999999999999999999875
No 337
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.14 E-value=0.15 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 338
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.28 Score=54.90 Aligned_cols=146 Identities=20% Similarity=0.284 Sum_probs=80.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcC
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVG 284 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~ 284 (938)
+.-|.++|++|.|||-||++|++. ....| +++... +++..--+ +-+..+..+. +.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhh------hHHHHHHHHHHHhhcC
Confidence 456889999999999999999997 33344 334332 11211111 1122222222 23236
Q ss_pred ceeeEEeCCCCC-----CCcCCchh--hhhhhc---c---CCCCCEEEEEcCChHHHHh-c---c-cCCeEecCCCChHH
Q 035647 285 KRFFLVLDDVWT-----DDYSKWEP--FHNCLM---H---GLRGSKILVTTRNEKVVRM-M---E-STDVISIKELSEQE 346 (938)
Q Consensus 285 ~~~LlVlDdv~~-----~~~~~~~~--l~~~l~---~---~~~gs~iivTtr~~~~~~~-~---~-~~~~~~l~~L~~~e 346 (938)
.+++|+||.++. .+...|.. +...|. + ...|.-||-.|..+++... + + -+...-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 799999999832 11122221 222222 1 2356677777776554332 1 1 14566677777888
Q ss_pred HHHHHHHhhcCCCCC-CCchhHHHHHH
Q 035647 347 CWWLFKRFAFFGRPP-SECEQLVEIGQ 372 (938)
Q Consensus 347 a~~lf~~~~~~~~~~-~~~~~~~~~~~ 372 (938)
-.++++........+ ..+-++.++|+
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 888888877543332 23344555443
No 339
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.11 E-value=0.061 Score=56.07 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=30.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD 246 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 246 (938)
...++.|.|.+|+|||++|.+++... ...=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 46799999999999999999886641 12224678888764
No 340
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.11 E-value=0.13 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999888764
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=95.10 E-value=0.06 Score=59.82 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+.+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988777764
No 342
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.08 E-value=0.22 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
-.+++|+|..|+|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 343
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.08 E-value=0.0056 Score=54.44 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=59.9
Q ss_pred ceEEEEEEcCCCCCCccccc-CCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCC
Q 035647 543 ELRHSILFLGYNASLPVCIY-NAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSN 621 (938)
Q Consensus 543 ~lr~l~l~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~ 621 (938)
++..+++++|.+..+|+.+. ..+.+++|++.+| . +..+|..+..++.|+.|+++.|+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n---e------------------isdvPeE~Aam~aLr~lNl~~N~- 111 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN---E------------------ISDVPEELAAMPALRSLNLRFNP- 111 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh---h------------------hhhchHHHhhhHHhhhcccccCc-
Confidence 34445555555555555443 2334555555443 1 45667777788888888999988
Q ss_pred CcccchhhhcccCCCeEEeCCccccccCcc
Q 035647 622 LRRLPQRIGKLVNLRHLIFVDVYLDYMPKG 651 (938)
Q Consensus 622 l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~ 651 (938)
+...|..+..|.+|-+|+..+|....+|-.
T Consensus 112 l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 112 LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888888888899999999888877777754
No 344
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.07 E-value=0.074 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 345
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.06 E-value=0.018 Score=54.02 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 346
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.06 E-value=0.28 Score=47.84 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=67.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeC-------------------CCCC----------------
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVS-------------------DNFD---------------- 249 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~~---------------- 249 (938)
.-.|++|+|++|+|||||.+-+..=+. .=...+|+.-. |.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 345999999999999999999876322 22344554321 1111
Q ss_pred ---------HHHHHHHHHHHhcCC-----CCC-cccHHHHHHHHHHhhcCceeeEEeCCCCC-CCcCCchhhhhhhcc-C
Q 035647 250 ---------EFRIAKAIIEALEGS-----APN-LGELQSLLQHIYASIVGKRFFLVLDDVWT-DDYSKWEPFHNCLMH-G 312 (938)
Q Consensus 250 ---------~~~~~~~i~~~l~~~-----~~~-~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~-~ 312 (938)
.++...++++.++.. .|. ....++-.-.|.+.|.=++-++.||..-. -|++....+...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 122333344444432 122 22333444557778887888999999832 122333333333222 2
Q ss_pred CCCCEEEEEcCChHHHHhc
Q 035647 313 LRGSKILVTTRNEKVVRMM 331 (938)
Q Consensus 313 ~~gs~iivTtr~~~~~~~~ 331 (938)
..|-..|+.|....-|+.+
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 3466666666665555443
No 347
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.04 E-value=0.12 Score=52.06 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=36.6
Q ss_pred HHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhcc-CCCCCEEEEEcCChHHHHhcccCCeEecCCC
Q 035647 278 IYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMH-GLRGSKILVTTRNEKVVRMMESTDVISIKEL 342 (938)
Q Consensus 278 l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~~~~~~~~~~~~~l~~L 342 (938)
+...+-.++-++++|+.-.. +......+...+.. ...|..||++|.+...... ..++.++.+
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 44555567889999987321 12222334444433 2346788888888765543 566666553
No 348
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.03 E-value=0.017 Score=57.41 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 349
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.00 E-value=0.03 Score=57.17 Aligned_cols=64 Identities=20% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 189 NILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 189 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
.+++..+... .++..+|+|.|.||+|||||.-.+....+.+++--.++=|+-++.++--.++.+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4566666543 347889999999999999999888876555555556677777777766555443
No 350
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.00 E-value=0.033 Score=50.65 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 186 EEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++.+++-+.|...- ....+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45555555554321 13458999999999999999999986
No 351
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.99 E-value=0.023 Score=57.60 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999875
No 352
>PRK05439 pantothenate kinase; Provisional
Probab=94.99 E-value=0.12 Score=54.66 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 187 EMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+...+.+.. ......+|+|.|.+|+||||+|+.+..-
T Consensus 69 ~~~~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 69 RLQAALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred HHHHHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444321 2346789999999999999999988763
No 353
>PRK08233 hypothetical protein; Provisional
Probab=94.98 E-value=0.019 Score=56.53 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|.+|+||||+|..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999875
No 354
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.98 E-value=0.032 Score=59.00 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=44.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..|+|-++.++++++.+.+.....+..-+|+.++|+.|.||||||..+.+-
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999997665434567899999999999999999998774
No 355
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.98 E-value=0.041 Score=55.43 Aligned_cols=60 Identities=22% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCH
Q 035647 187 EMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDE 250 (938)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 250 (938)
+..++++.+.... .+..+|+|.|.||+|||||.-++....+.+++--.++=|+=+..++-
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 5556667666543 36789999999999999999888776333333334555554555544
No 356
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.97 E-value=0.11 Score=53.18 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.7
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+..+|+|.|.+|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999875
No 357
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.97 E-value=0.085 Score=58.79 Aligned_cols=57 Identities=25% Similarity=0.181 Sum_probs=35.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN-FDEFRIAKAIIEALEG 263 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 263 (938)
.+.+|.++|.+|+||||.|..++.... +..+ .+..|++... ....+.+..++++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 567999999999999999999987532 1222 3444444321 1223445555565543
No 358
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.96 E-value=0.059 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.054 Score=51.73 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=63.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD--EFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
-.+++|+|..|.|||||++.+.... ......+++....... .... ...+.-- .+....+...-.+...+-
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~-~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYV-PQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEE-eeCCHHHHHHHHHHHHHh
Confidence 3589999999999999999998742 2344555553321111 1111 1111100 012222333344556666
Q ss_pred CceeeEEeCCCCCC-CcCCchhhhhhhccC-CCCCEEEEEcCChHHHHh
Q 035647 284 GKRFFLVLDDVWTD-DYSKWEPFHNCLMHG-LRGSKILVTTRNEKVVRM 330 (938)
Q Consensus 284 ~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~~~~~ 330 (938)
..+-++++|+.-.. +......+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67889999998421 112222333333321 225678888887766554
No 360
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.92 E-value=0.11 Score=56.93 Aligned_cols=82 Identities=24% Similarity=0.238 Sum_probs=48.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN-----LGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 279 (938)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+ +...+. .-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4569999999999999999999875 222335678887654 233332 223444432211 123333333332
Q ss_pred HhhcCceeeEEeCCC
Q 035647 280 ASIVGKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~~~~~LlVlDdv 294 (938)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235668899988
No 361
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.92 E-value=0.031 Score=52.33 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=26.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEE
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVC 243 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 243 (938)
..+|-|.|.+|+||||||+++.+. ....-..+++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999986 334444556654
No 362
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.91 E-value=0.067 Score=58.23 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=38.0
Q ss_pred CccccchHHHHHHHHHhhcc-------cC-CCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCE-------FG-EEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.++.++.+.-.+... .. ......+-|.++|++|+|||++|+.++..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999998887776532 00 01123467899999999999999999886
No 363
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=5.3 Score=41.01 Aligned_cols=94 Identities=21% Similarity=0.374 Sum_probs=58.6
Q ss_pred ccccchHHHHHHHHHhhccc-------CCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEF-------GEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
++-|-+...+.+.+...-+- + ....-+-|.++|++|.||+.||++|+.... . -|++++..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----- 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH-----
Confidence 46788888888877653211 1 223468899999999999999999998632 2 23344432
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVW 295 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 295 (938)
.+++..-+ +-+.++..|.+.-+ .++-+|++|.+.
T Consensus 201 ---DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 22222221 12334444444443 689999999983
No 364
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.90 E-value=0.19 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 365
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.89 E-value=0.12 Score=57.15 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=50.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcccHH-----H
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGS------APNLGELQ-----S 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~ 273 (938)
.-..++|+|..|+|||||++.+..... ....+++..-....+...+....+...... ..+..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345899999999999999998887422 223455554333445554444443332111 11111111 1
Q ss_pred HHHHHHHhhc--CceeeEEeCCC
Q 035647 274 LLQHIYASIV--GKRFFLVLDDV 294 (938)
Q Consensus 274 ~~~~l~~~l~--~~~~LlVlDdv 294 (938)
..-.+.++++ ++..|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 2233455553 88999999999
No 366
>PTZ00301 uridine kinase; Provisional
Probab=94.89 E-value=0.02 Score=57.14 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHH
Confidence 3579999999999999999988764
No 367
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.88 E-value=0.022 Score=57.54 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=23.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999875
No 368
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.85 E-value=0.022 Score=57.25 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|.+|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999874
No 369
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.85 E-value=0.64 Score=49.74 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=32.6
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhH
Q 035647 336 VISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLA 384 (938)
Q Consensus 336 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 384 (938)
.+++++++.+|+..++..+.-.+--. .....+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999998776333221 1123344556677777999854
No 370
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.81 E-value=0.12 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCChHHHHHHHHHc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987754
No 371
>PRK04328 hypothetical protein; Provisional
Probab=94.80 E-value=0.082 Score=54.79 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=31.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN 247 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 247 (938)
.-.++.|.|.+|+|||+||.+++.. ....-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 4679999999999999999887764 2223456888887663
No 372
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.79 E-value=0.015 Score=57.96 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=45.6
Q ss_pred cCCCCCcceEEEeec--CCCCCCCchhhhccCccEEEEeCCCC--CCCCCCCCCCCCccceeeccccC
Q 035647 751 LQAPPNIESLEMCYY--KGKTALPSWVVLLNKLKKLYLTHCNN--CEIMPSLGKLPSLEILQIIGMRS 814 (938)
Q Consensus 751 l~~~~~L~~L~L~~~--~~~~~lp~~~~~l~~L~~L~L~~~~~--~~~l~~l~~l~~L~~L~L~~~~~ 814 (938)
+..+++|++|.++.| .....++.....+++|++|++++|++ .+.++.+..+.+|..|++.+|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 445678888888888 55544555555678888888888863 34556677778888888888763
No 373
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.37 Score=55.55 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=57.2
Q ss_pred CccccchHHHHHHHHHhhccc------CCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEF------GEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.++-|-++.+.+|.+-+.-+- +.+-.+..-|.++|++|.|||-+|++|+..-. .-|+++..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH-----
Confidence 356788888888887653210 00112355789999999999999999998511 234555443
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWT 296 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 296 (938)
+++..--++ ...++. +...+.-..++++|+||.++.
T Consensus 740 ---ELLNMYVGq--SE~NVR---~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVGQ--SEENVR---EVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhcc--hHHHHH---HHHHHhhccCCeEEEeccccc
Confidence 222221111 112222 222233346899999999954
No 374
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.78 E-value=0.19 Score=59.75 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.-..|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999965
No 375
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.0011 Score=65.89 Aligned_cols=83 Identities=24% Similarity=0.229 Sum_probs=58.8
Q ss_pred hccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCc--hhhhccCccEEE
Q 035647 708 TTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPS--WVVLLNKLKKLY 785 (938)
Q Consensus 708 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~ 785 (938)
......++.|+.|.|+-|.++. +..+..|++|++|+|..|.+.. +.. .+.++++|+.|.
T Consensus 34 Isic~kMp~lEVLsLSvNkIss------------------L~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 34 ISICEKMPLLEVLSLSVNKISS------------------LAPLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHHhcccceeEEeecccccc------------------chhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 4445577888889998888763 3456678888889988887655 433 244788888898
Q ss_pred EeCCCCCCCCC------CCCCCCCccceee
Q 035647 786 LTHCNNCEIMP------SLGKLPSLEILQI 809 (938)
Q Consensus 786 L~~~~~~~~l~------~l~~l~~L~~L~L 809 (938)
|..|+.+..-+ .+.-||+|+.|+=
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 98888665433 3556788877753
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.77 E-value=0.14 Score=53.70 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=47.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCC---CCcccH-HHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDE--FRIAKAIIEALEGSA---PNLGEL-QSLLQHI 278 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~-~~~~~~l 278 (938)
+.+++.++|.+|+||||.+..++... ...-..+.++++.. +.. .+-+....+..+... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 56899999999999999998888652 22223455665432 222 222333344444221 111122 2222334
Q ss_pred HHhhcCceeeEEeCCCCC
Q 035647 279 YASIVGKRFFLVLDDVWT 296 (938)
Q Consensus 279 ~~~l~~~~~LlVlDdv~~ 296 (938)
.....+..=++|+|-...
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 333334455788888743
No 377
>PRK06762 hypothetical protein; Provisional
Probab=94.75 E-value=0.024 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 378
>PHA00729 NTP-binding motif containing protein
Probab=94.73 E-value=0.038 Score=55.15 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999885
No 379
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.71 E-value=0.19 Score=59.65 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=80.2
Q ss_pred CccccchHHHHHHHHHhhcccCC------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.++.|.+...+++.+.+.....+ ...-.+-|.++|++|+|||++|+.++... ...| +.++.++
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------
Confidence 35677766666555543211100 01123459999999999999999998752 2222 2232221
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCC----------cCCchhhhhhh----cc--CCCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDD----------YSKWEPFHNCL----MH--GLRGS 316 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~l~~~l----~~--~~~gs 316 (938)
+ .+..... ........+.......+++|++|+++.-. ..........+ .. ...+.
T Consensus 221 ~----~~~~~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 F----VEMFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred h----HHhhhcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1 1111110 11112222222233568999999984310 01111222222 11 12344
Q ss_pred EEEEEcCChHHHHh-c-c---cCCeEecCCCChHHHHHHHHHhhc
Q 035647 317 KILVTTRNEKVVRM-M-E---STDVISIKELSEQECWWLFKRFAF 356 (938)
Q Consensus 317 ~iivTtr~~~~~~~-~-~---~~~~~~l~~L~~~ea~~lf~~~~~ 356 (938)
-||.||...+.... + . -+..+.++.-+.++-.++++.+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 55567776553321 1 1 145778888888888888877763
No 380
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.29 Score=48.18 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCceeeEEeCCCCCCCcCCchh---hhhhhcc-CCCCCEEEEEcCChHHHHhcccCCeE
Q 035647 272 QSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEP---FHNCLMH-GLRGSKILVTTRNEKVVRMMESTDVI 337 (938)
Q Consensus 272 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~---l~~~l~~-~~~gs~iivTtr~~~~~~~~~~~~~~ 337 (938)
+.....+.+.+-=++-+.|||..++ --+.+. +...+.. ...|+-++|.|..+.++..+..+.++
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DS--GLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDS--GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCc--CccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3344555555566788999999843 223333 2222222 23477888888888888887654443
No 381
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.71 E-value=0.043 Score=55.24 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 382
>PRK03839 putative kinase; Provisional
Probab=94.70 E-value=0.022 Score=55.91 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999986
No 383
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.70 E-value=0.18 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 384
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.69 E-value=0.016 Score=51.67 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHHcccccccCCC
Q 035647 209 ISMVGMGGIGKTTLAQFVYNDSCVINNFD 237 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 237 (938)
|.|+|.+|+||||+|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999986 455553
No 385
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.69 E-value=0.17 Score=50.47 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=61.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccc--c-ccc----------CC------C-eEEEEEeCCCCCH--HHHHHHHHHHhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDS--C-VIN----------NF------D-KRMWVCVSDNFDE--FRIAKAIIEALE 262 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~--~-~~~----------~f------~-~~~wv~~~~~~~~--~~~~~~i~~~l~ 262 (938)
.-.+++|+|..|.|||||.+.++... . ..+ .+ . .+.++. +.... .....+++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~~~l~~~- 101 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAF--QYPPEIPGVKNADFLRYV- 101 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEee--cChhhccCccHHHHHhhc-
Confidence 34699999999999999999988751 1 000 00 0 011221 11100 00111111111
Q ss_pred CCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCC-CCcCCchhhhhhhccC-CCCCEEEEEcCChHHHH
Q 035647 263 GSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWT-DDYSKWEPFHNCLMHG-LRGSKILVTTRNEKVVR 329 (938)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~~~~ 329 (938)
.......+...-.+...+-..+-++++|+.-. -+......+...+... ..|..||++|.+.....
T Consensus 102 --~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 --NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 11222233333445666667888999999832 1112223343444332 23667888888877655
No 386
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.69 E-value=0.31 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999764
No 387
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.68 E-value=0.26 Score=51.30 Aligned_cols=116 Identities=14% Similarity=0.029 Sum_probs=61.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-------CcccHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-------NLGELQSLLQH 277 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~ 277 (938)
..+-++|+|..|+|||||.+.++... ......+++.-..-... +-..++......-.. +..+.......
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHHHH
Confidence 45789999999999999999999752 23334444421111000 011223222221100 00000111222
Q ss_pred HHHhhc-CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 278 IYASIV-GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 278 l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
+...+. ..+-++++|.+.. .+.+..+...+ ..|..||+||.+..+..
T Consensus 186 ~~~~i~~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 333333 4788999999842 33344444443 24778999999766543
No 388
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.64 E-value=0.059 Score=56.43 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=39.8
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIE 259 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 259 (938)
+.-+++.|+|.+|+|||++|.++... .......++||+..+. ..++.+.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 36789999999999999999998885 4455788999998873 4444444433
No 389
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.62 E-value=0.12 Score=52.86 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=30.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD 246 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 246 (938)
.-.++.|.|.+|+||||+|.+++... ...-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 46799999999999999999876531 12235678888754
No 390
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.62 E-value=0.045 Score=57.93 Aligned_cols=83 Identities=20% Similarity=0.151 Sum_probs=51.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
.-+++-|+|..|+||||||..++.. ....-..++||+....++. ..++.++.+.. .....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4579999999999999999888875 3334467889998876655 34445554321 1233455555555
Q ss_pred Hhhc-CceeeEEeCCC
Q 035647 280 ASIV-GKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv 294 (938)
..++ +.--++|+|.|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5565 34558999998
No 391
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.62 E-value=0.23 Score=50.56 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.++..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999763
No 392
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=0.13 Score=55.27 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=51.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD-EFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
+.+++.++|+.|+||||++..++.... ..-..+.+|++..... ..+-+...++.++.......+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 568999999999999999999886522 2223466676643322 2334444555554332222333444444433211
Q ss_pred -CceeeEEeCCCCC
Q 035647 284 -GKRFFLVLDDVWT 296 (938)
Q Consensus 284 -~~~~LlVlDdv~~ 296 (938)
+..=++++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3346788888744
No 393
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.60 E-value=0.12 Score=50.01 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=62.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC---CCHHHHHHHHH--HH--hcCC----C-CCcc---
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN---FDEFRIAKAII--EA--LEGS----A-PNLG--- 269 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~--~~--l~~~----~-~~~~--- 269 (938)
....|.|+|-.|-||||.|..++-.. ..+=..+..+-+-.. ......+..+- .. .+.. . ....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra--~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA--VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 34689999999999999997776541 111122333333221 22222222210 00 0010 0 0001
Q ss_pred cHHHHHHHHHHhhcCcee-eEEeCCCCC---CCcCCchhhhhhhccCCCCCEEEEEcCChH
Q 035647 270 ELQSLLQHIYASIVGKRF-FLVLDDVWT---DDYSKWEPFHNCLMHGLRGSKILVTTRNEK 326 (938)
Q Consensus 270 ~~~~~~~~l~~~l~~~~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 326 (938)
......+..++.+...+| |+|||.+-. ...-..+.+...+.....+..||+|-|...
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233444455555555 999999821 122334556666666666789999999753
No 394
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.59 E-value=0.12 Score=56.16 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=57.6
Q ss_pred CceEEEEEEecCCChHHHHHHHHHccccc----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYNDSCV----INNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY 279 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 279 (938)
..++-+-|||..|.|||.|.-.+|+...+ +-||+ ....++-+.+..-...... +..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHH
Confidence 35778999999999999999999986322 23342 2233333333321112222 23344
Q ss_pred HhhcCceeeEEeCCCCCCCcCCchhhhhhhcc-CCCCCEEEEEcCC
Q 035647 280 ASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMH-GLRGSKILVTTRN 324 (938)
Q Consensus 280 ~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~ 324 (938)
+.+.++..||.||.+.-.+..+---+...|.. ...|..+|.||..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCC
Confidence 55566778999999865443332222222222 2356555555553
No 395
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.58 E-value=0.019 Score=33.93 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.2
Q ss_pred cccEEeecCCCCCcccchhhhcc
Q 035647 610 NLQTIEIEECSNLRRLPQRIGKL 632 (938)
Q Consensus 610 ~L~~L~L~~~~~l~~lp~~i~~L 632 (938)
+|++|+|++|. ++.+|..+++|
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT-
T ss_pred CccEEECCCCc-CEeCChhhcCC
Confidence 58999999996 88999887654
No 396
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.18 Score=57.07 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=34.5
Q ss_pred CccccchHHHHHHHHHhhcccC-C------CCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG-E------EQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~-~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+++-|-|+-..+|.+...-.-. + +-...+-|..+|+||.|||++|+.+++.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 3455666665555544332110 0 1245788999999999999999999996
No 397
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.56 E-value=0.087 Score=60.97 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=46.4
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN 247 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 247 (938)
...++|+...++++.+.+..-.. ...-|.|+|..|+|||++|+.+.+... ..-...+.|++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccC
Confidence 45699999999998888765432 345789999999999999999987521 12234556666654
No 398
>PRK04040 adenylate kinase; Provisional
Probab=94.55 E-value=0.028 Score=55.25 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 399
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.55 E-value=0.56 Score=48.28 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=64.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
.+.+.++|+.|+|||+-++.+++. ....+.+..+..++...+...++....... .....+....+...+++.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccC
Confidence 348999999999999999999985 233344456666666666666665554432 233445566666777888
Q ss_pred eeeEEeCCCCCCCcCCchhhhhh
Q 035647 286 RFFLVLDDVWTDDYSKWEPFHNC 308 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~~~l~~~ 308 (938)
.-++++|+...-....++.++..
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred cceeeeehhhccChHHHHHHHHH
Confidence 99999999966444555555543
No 400
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.26 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|.|||||.+.++.-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 401
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.24 Score=49.51 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3469999999999999999999874
No 402
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.024 Score=54.90 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=22.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|-||-|+||||||+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999985
No 403
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.53 E-value=0.3 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 404
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.53 E-value=0.08 Score=57.69 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHhhcc--------cCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCE--------FGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.++.++.+..++... ........+.|.++|++|+|||++|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998888541 0000112467899999999999999999885
No 405
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.51 E-value=0.021 Score=50.40 Aligned_cols=21 Identities=48% Similarity=0.607 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 035647 209 ISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~ 229 (938)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998876
No 406
>PRK00625 shikimate kinase; Provisional
Probab=94.51 E-value=0.025 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.++|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999875
No 407
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.51 E-value=0.24 Score=46.12 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHhcCCC-----C-CcccHHHHHHHHHHhhcCceeeEEeCCCCC-CCcCCchhhhhhhc--cCCCCCEEE
Q 035647 249 DEFRIAKAIIEALEGSA-----P-NLGELQSLLQHIYASIVGKRFFLVLDDVWT-DDYSKWEPFHNCLM--HGLRGSKIL 319 (938)
Q Consensus 249 ~~~~~~~~i~~~l~~~~-----~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-~~~~~~~~l~~~l~--~~~~gs~ii 319 (938)
+.....+..+++++... + +....++-.-.|.+.+...+-+++=|.--- -+...-+.+...+. ....|+..+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlV 201 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEE
Confidence 34455666777776432 2 233445555667788888999999997521 11111122222222 234688888
Q ss_pred EEcCChHHHHhccc
Q 035647 320 VTTRNEKVVRMMES 333 (938)
Q Consensus 320 vTtr~~~~~~~~~~ 333 (938)
+.|.++.++..|..
T Consensus 202 lVTHD~~LA~Rc~R 215 (228)
T COG4181 202 LVTHDPQLAARCDR 215 (228)
T ss_pred EEeCCHHHHHhhhh
Confidence 99999998887643
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.50 E-value=0.2 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998875
No 409
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.49 E-value=0.03 Score=58.60 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+-+.++|++|+|||++++.....
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCcEEEECCCCCchhHHHHhhhcc
Confidence 346799999999999999998864
No 410
>PRK06217 hypothetical protein; Validated
Probab=94.47 E-value=0.058 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999976
No 411
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.44 E-value=0.064 Score=47.76 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHhhcccC-CCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 180 EVRGRDEEMNILKSKLLCEFG-EEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+++|-+-..+.|++.+.+--. ....++-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 467776666666665543211 13457889999999999999999888775
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.44 E-value=0.063 Score=53.53 Aligned_cols=120 Identities=11% Similarity=0.159 Sum_probs=58.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcc---cHHHHHHHHHHhh
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLG---ELQSLLQHIYASI 282 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l 282 (938)
.+++.|.|+.|.||||+.+.+..-. +..+.. .+|.+.. .. -.++..|...++....... ....-..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~G--~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQIG--CFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHcC--CCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886431 111110 1111110 00 0222233333322211000 0000011122222
Q ss_pred --cCceeeEEeCCCCCCC-cCCch----hhhhhhccCCCCCEEEEEcCChHHHHhcc
Q 035647 283 --VGKRFFLVLDDVWTDD-YSKWE----PFHNCLMHGLRGSKILVTTRNEKVVRMME 332 (938)
Q Consensus 283 --~~~~~LlVlDdv~~~~-~~~~~----~l~~~l~~~~~gs~iivTtr~~~~~~~~~ 332 (938)
..++-|+++|+..... ..+.. .+...+.. .|+.+|++|...+.+..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2568899999984321 11111 12222322 3889999999988877654
No 413
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.077 Score=56.67 Aligned_cols=83 Identities=24% Similarity=0.251 Sum_probs=52.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN-----LGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 279 (938)
.-.+|.|-|.||||||||..+++.+ ....- .+++|+-.+ +..++ +--++.++..... ..++++..+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4569999999999999999999886 33333 677776554 33322 2234555533221 233444333333
Q ss_pred HhhcCceeeEEeCCCCC
Q 035647 280 ASIVGKRFFLVLDDVWT 296 (938)
Q Consensus 280 ~~l~~~~~LlVlDdv~~ 296 (938)
+ .++-++|+|-++.
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 5788999999943
No 414
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.42 E-value=0.3 Score=48.53 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEE---------------eCCCCC---HHHHHHHHHHHhcCCCC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVC---------------VSDNFD---EFRIAKAIIEALEGSAP 266 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------~~~~~~---~~~~~~~i~~~l~~~~~ 266 (938)
.-.+++|.|..|.|||||.+.++.-.. .......+++. +.+... ...+...+.-.... .
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~ 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--R 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh--c
Confidence 345899999999999999999987420 01222222221 111110 01122222110000 0
Q ss_pred CcccHHHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccC-CCCCEEEEEcCChH
Q 035647 267 NLGELQSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHG-LRGSKILVTTRNEK 326 (938)
Q Consensus 267 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~ 326 (938)
.....+...-.+...+-.++-++++|+.-.. +......+...+... ..|..||++|.+..
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 1222233333455666677889999997321 122223344444332 24777888888764
No 415
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.41 E-value=0.052 Score=57.61 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=81.6
Q ss_pred CCccccchHHHHHHHHHhhcccCC-----------CCCceEEEEEEecCCChHHHHHHHHHccccc--ccCC---CeEEE
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGE-----------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCV--INNF---DKRMW 241 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f---~~~~w 241 (938)
.-...|-..+...|.+.+-..... .-..--++.|+|.+|+||||+.+++...... ...| .+.+-
T Consensus 370 ~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~ 449 (593)
T COG2401 370 ELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVE 449 (593)
T ss_pred eeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCcee
Confidence 334566677888887766332110 0012348999999999999999999764211 1111 01111
Q ss_pred E---------EeC--CCCCHHHHHHH-------------HHHHhcCCC--------CCcccHHHHHHHHHHhhcCceeeE
Q 035647 242 V---------CVS--DNFDEFRIAKA-------------IIEALEGSA--------PNLGELQSLLQHIYASIVGKRFFL 289 (938)
Q Consensus 242 v---------~~~--~~~~~~~~~~~-------------i~~~l~~~~--------~~~~~~~~~~~~l~~~l~~~~~Ll 289 (938)
+ .-. ..++...++.+ |++..+... .+..+.+.-..+|.+.+.+++-++
T Consensus 450 vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 450 VPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 1 111 11111122222 222222211 112223334556778888888999
Q ss_pred EeCCCCCCCcCCch--hhhhhhccC--CCCCEEEEEcCChHHHHhcccCCe
Q 035647 290 VLDDVWTDDYSKWE--PFHNCLMHG--LRGSKILVTTRNEKVVRMMESTDV 336 (938)
Q Consensus 290 VlDdv~~~~~~~~~--~l~~~l~~~--~~gs~iivTtr~~~~~~~~~~~~~ 336 (938)
+.|..... .+... .+...+... .-|+.+++.|+.+++.+.+..+..
T Consensus 530 ~iDEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 530 LIDEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred Ehhhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 99988321 01111 122333322 257778888888888887755443
No 416
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.28 Score=50.50 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccCCCCCEEEEEcCChHHHHh
Q 035647 276 QHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRM 330 (938)
Q Consensus 276 ~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~ 330 (938)
-.+...+-.++-++++|+.... +......+...+.....|..||++|.+......
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 3455666678899999998431 122223344444433236678888887766543
No 417
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.36 E-value=0.032 Score=55.25 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+|+|+|.+|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999864
No 418
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.36 E-value=1.1 Score=47.50 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=77.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccc---c---cc--cCCCeEEEEEe-CCCCCHHHHHHHHHHHhcCCCCCcccHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDS---C---VI--NNFDKRMWVCV-SDNFDEFRIAKAIIEALEGSAPNLGELQSLL 275 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~---~---~~--~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 275 (938)
-.++..++|..|+||+++|..+.+.. . .. .+=+.+.+++. +.....+++. ++.+.+.-.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~----------- 84 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS----------- 84 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC-----------
Confidence 45677899999999999999887652 0 01 11112333321 1111111111 111111100
Q ss_pred HHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-hHHHHhc-ccCCeEecCCCChHHHHHHHHH
Q 035647 276 QHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-EKVVRMM-ESTDVISIKELSEQECWWLFKR 353 (938)
Q Consensus 276 ~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~ 353 (938)
..-.+++-++|+|++..-.....+.+...+..-...+.+|++|.+ ..+.+.+ .....+++.+++.++..+.+..
T Consensus 85 ----~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 85 ----SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ----CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 000147778999998554445566788777776667777766654 3343332 3467899999999999887765
Q ss_pred h
Q 035647 354 F 354 (938)
Q Consensus 354 ~ 354 (938)
.
T Consensus 161 ~ 161 (299)
T PRK07132 161 K 161 (299)
T ss_pred c
Confidence 4
No 419
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.34 E-value=0.42 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999753
No 420
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.31 E-value=0.1 Score=52.18 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=50.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCcccHHH----
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN-FDEFRIAKAIIEALEG-------SAPNLGELQS---- 273 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 273 (938)
-+.++|.|.+|+|||+|+.++++.. .-+.++++.+++. .+..++.+++...-.. ...+......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3578999999999999999999863 2344577777654 3344555555332110 0111111111
Q ss_pred -HHHHHHHhh--cCceeeEEeCCC
Q 035647 274 -LLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 274 -~~~~l~~~l--~~~~~LlVlDdv 294 (938)
..-.+.+++ +++..|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 112233444 489999999999
No 421
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.28 E-value=0.22 Score=51.39 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=54.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccccc--ccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH--
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCV--INNFDKRMWVCVSDNF-DEFRIAKAIIEALEGS-------APNLGELQ-- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 272 (938)
+-+.++|.|-.|+|||+|+.++.++... +.+-+.++++-+++.. +..++..++.+.-... ..+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999999999886331 1224678888887654 3345555554431111 11111111
Q ss_pred ---HHHHHHHHhhc---CceeeEEeCCC
Q 035647 273 ---SLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 273 ---~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
...-.+.++++ +++.|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 12333556653 68999999999
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.28 E-value=0.24 Score=56.89 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=36.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE 262 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 262 (938)
.-.++.|.|.+|+|||||+.+++... ...=+.+++++..+ +..++...+ +.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 56799999999999999999988752 22335677777655 455555553 4444
No 423
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.26 E-value=0.17 Score=50.28 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=27.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCC--------CeEEEEEeCCC
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNF--------DKRMWVCVSDN 247 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 247 (938)
.++.|+|.+|+||||++..++...-....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 388999999999999998887753222222 36788877664
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.26 Score=58.36 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=49.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
.++++++|+.|+||||.+.+++...........+..++... .....+-+....+.++.......+..++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 57999999999999999999887522111123455554332 1123344555555555443333344444444433 333
Q ss_pred ceeeEEeCCCC
Q 035647 285 KRFFLVLDDVW 295 (938)
Q Consensus 285 ~~~LlVlDdv~ 295 (938)
+ =++++|=..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 377777764
No 425
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.19 Score=55.53 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=46.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
...+++++|..|+||||++..++...........+..+.... .....+-+....+.++.......+..+....+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999998876421112223344443322 112233344455555544333333333333332 233
Q ss_pred CceeeEEeCCCC
Q 035647 284 GKRFFLVLDDVW 295 (938)
Q Consensus 284 ~~~~LlVlDdv~ 295 (938)
+ .-++++|-..
T Consensus 269 ~-~d~VLIDTaG 279 (420)
T PRK14721 269 G-KHMVLIDTVG 279 (420)
T ss_pred C-CCEEEecCCC
Confidence 3 3567777763
No 426
>PRK14532 adenylate kinase; Provisional
Probab=94.21 E-value=0.14 Score=50.66 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 035647 209 ISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~ 229 (938)
|.|.|++|+||||+|+.++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999874
No 427
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.20 E-value=0.35 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 428
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.19 E-value=0.3 Score=50.44 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=63.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHccccc-cc--CCC--eEEEEEeC----CCCCHHHHH--------------HHHHHHhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCV-IN--NFD--KRMWVCVS----DNFDEFRIA--------------KAIIEALE 262 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~--~f~--~~~wv~~~----~~~~~~~~~--------------~~i~~~l~ 262 (938)
-.+++|+|..|+|||||++.++..... .+ .++ .+.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 458999999999999999999875211 01 011 12222111 111222222 12233332
Q ss_pred CCC------CCcccHHHHHHHHHHhhcCceeeEEeCCCCCC-CcCCchhhhhhhccC--CCCCEEEEEcCChHHHHh
Q 035647 263 GSA------PNLGELQSLLQHIYASIVGKRFFLVLDDVWTD-DYSKWEPFHNCLMHG--LRGSKILVTTRNEKVVRM 330 (938)
Q Consensus 263 ~~~------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~~~~~ 330 (938)
... ......+...-.+...+-..+-++++|+.-.. +......+...+... ..+..||++|.+......
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 211 01112222233455666678899999997321 111122233333332 236778888888765553
No 429
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.19 E-value=0.077 Score=52.02 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=32.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+++|-+..+..+.-...+ .+-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 5688998888887766643 35799999999999999999864
No 430
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.18 E-value=0.18 Score=55.86 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=49.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCcccHHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGS-------APNLGELQS---- 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 273 (938)
+-..++|+|..|+|||||++.++.... ....++...-.....+.++....+..-+.. ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999887522 222233322223334444544443322111 111111111
Q ss_pred -HHHHHHHhh--cCceeeEEeCCC
Q 035647 274 -LLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 274 -~~~~l~~~l--~~~~~LlVlDdv 294 (938)
..-.+.+++ +++..|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 233355666 488999999999
No 431
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.17 E-value=0.28 Score=49.05 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|.|||||.+.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 432
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.14 E-value=0.43 Score=48.80 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=67.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccc----------------cCC-CeEEEEE----------------eCCC----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVI----------------NNF-DKRMWVC----------------VSDN---- 247 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----------------~~f-~~~~wv~----------------~~~~---- 247 (938)
.-.+++|+|+.|+|||||.+.++.-.... +.+ ..+.++. .+..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 34699999999999999999998621000 000 0122221 0100
Q ss_pred ----CC--HHHHHHHHHHHhcCCC------CCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCch---hhhhhhcc-
Q 035647 248 ----FD--EFRIAKAIIEALEGSA------PNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWE---PFHNCLMH- 311 (938)
Q Consensus 248 ----~~--~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~---~l~~~l~~- 311 (938)
.+ ..+...+.++.++... .+....+...-.+...|..+.=++++|+--+ .-+.. .+...+..
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs--~LDi~~Q~evl~ll~~l 184 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTS--HLDIAHQIEVLELLRDL 184 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcc--ccCHHHHHHHHHHHHHH
Confidence 01 1224444455554321 1222333334456677888888999998621 11111 12222222
Q ss_pred -CCCCCEEEEEcCChHHHHhc
Q 035647 312 -GLRGSKILVTTRNEKVVRMM 331 (938)
Q Consensus 312 -~~~gs~iivTtr~~~~~~~~ 331 (938)
..+|..||+++.+.+.|...
T Consensus 185 ~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 185 NREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HHhcCCEEEEEecCHHHHHHh
Confidence 23477899999998877654
No 433
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.13 E-value=0.26 Score=55.50 Aligned_cols=88 Identities=11% Similarity=0.163 Sum_probs=46.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
.+|++++|..|+||||++.+++.....+.....+..+.... .....+-+....+.++.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987522222122345554432 12223334444555544322222222222222 22333
Q ss_pred ceeeEEeCCCC
Q 035647 285 KRFFLVLDDVW 295 (938)
Q Consensus 285 ~~~LlVlDdv~ 295 (938)
+..+++|-..
T Consensus 335 -~d~VLIDTaG 344 (484)
T PRK06995 335 -KHIVLIDTIG 344 (484)
T ss_pred -CCeEEeCCCC
Confidence 3477788774
No 434
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.13 E-value=0.35 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 435
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.08 E-value=0.11 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.3
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+|+|+|.+|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999874
No 436
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.07 E-value=0.3 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|+|||||++.++.-
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 437
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.25 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.-.+++|+|..|+|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346999999999999999999985
No 438
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.06 E-value=0.031 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 439
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.56 Score=44.73 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhc--cCCCCCEEEEEcCCh
Q 035647 271 LQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLM--HGLRGSKILVTTRNE 325 (938)
Q Consensus 271 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~--~~~~gs~iivTtr~~ 325 (938)
.++..-.+.+..-.++-|-|+|.....-...-..+...+. +...|..||.||..+
T Consensus 134 GQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred hHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 3444555666667889999999985421112222333332 345788999999865
No 440
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.05 E-value=0.13 Score=56.61 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=50.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGS-------APNLGELQ---- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 272 (938)
.-..++|+|..|+|||||++.+++.. ..+.++.+-+++.. .+.++...++..-+.. ..+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34689999999999999999998742 22455556555433 2344444443321110 11111111
Q ss_pred -HHHHHHHHhh--cCceeeEEeCCC
Q 035647 273 -SLLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 273 -~~~~~l~~~l--~~~~~LlVlDdv 294 (938)
...-.+.+++ ++++.|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1233355665 488999999999
No 441
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.02 E-value=0.07 Score=54.59 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=50.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccC-CCeEEEEEeCCCCCHHHHHHHHHHHhcCC---------------CCC-
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINN-FDKRMWVCVSDNFDEFRIAKAIIEALEGS---------------APN- 267 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~- 267 (938)
...++.|.|.+|+|||++|.+++.. .... =+.++||+.... .+.+.+.+- .++-+ ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4569999999999999999887754 2122 356788887653 344444432 22211 000
Q ss_pred ----cccHHHHHHHHHHhhcC-ceeeEEeCCC
Q 035647 268 ----LGELQSLLQHIYASIVG-KRFFLVLDDV 294 (938)
Q Consensus 268 ----~~~~~~~~~~l~~~l~~-~~~LlVlDdv 294 (938)
..+.+.....+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23455566666655542 3467888876
No 442
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.02 E-value=0.18 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.9
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+..++.|.|.+|+|||||...+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999885
No 443
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.01 E-value=0.29 Score=55.33 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=48.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+ +...+... ++.++.... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 4569999999999999999999875 222224678887654 33333222 444443211 1123333333332
Q ss_pred HhhcCceeeEEeCCC
Q 035647 280 ASIVGKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~~~~~LlVlDdv 294 (938)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 34557888887
No 444
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.00 E-value=0.044 Score=54.69 Aligned_cols=26 Identities=42% Similarity=0.525 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++.+|.++||+|+||||..+.++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45678999999999999999999876
No 445
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.93 E-value=0.14 Score=56.56 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=51.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCccc-----HH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGS-------APNLGE-----LQ 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 272 (938)
.-+.++|+|..|+|||||++.++.... ....++...-....++.++....+..-+.. ..+... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 445889999999999999999987522 122334332233355666666555442211 111111 11
Q ss_pred HHHHHHHHhhc--CceeeEEeCCC
Q 035647 273 SLLQHIYASIV--GKRFFLVLDDV 294 (938)
Q Consensus 273 ~~~~~l~~~l~--~~~~LlVlDdv 294 (938)
.....+.++++ +++.|+++||+
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecch
Confidence 22334555553 78999999999
No 446
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.90 E-value=0.13 Score=59.55 Aligned_cols=63 Identities=14% Similarity=-0.022 Sum_probs=41.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN 247 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 247 (938)
..++|....++++.+.+..-.. .-.-|.|+|..|+||+++|+.+.... ...-...+.+++...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~ 266 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASI 266 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccC
Confidence 4689998888888776643211 22348899999999999999976531 111233456666553
No 447
>PRK05922 type III secretion system ATPase; Validated
Probab=93.89 E-value=0.32 Score=53.89 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=49.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCcccHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKAIIEALEGS-------APNLGELQ---- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 272 (938)
+-..++|+|..|+|||||.+.+..... .+..+.+.++. ..+..+.+.+........ ..+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 345799999999999999999987521 23333333332 223344454444333221 11111111
Q ss_pred -HHHHHHHHhh--cCceeeEEeCCC
Q 035647 273 -SLLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 273 -~~~~~l~~~l--~~~~~LlVlDdv 294 (938)
...-.+.+++ +++++|+++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1233455666 388999999999
No 448
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.86 E-value=0.24 Score=49.55 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHHhhcCceeeEEeCCCCCC-CcCCch-hhhhhhccCC-C-CCEEEEEcCChHHHHhcccCCeEec
Q 035647 277 HIYASIVGKRFFLVLDDVWTD-DYSKWE-PFHNCLMHGL-R-GSKILVTTRNEKVVRMMESTDVISI 339 (938)
Q Consensus 277 ~l~~~l~~~~~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtr~~~~~~~~~~~~~~~l 339 (938)
.+...+...+-++++|+.-.. +..... .+...+.... . |..||++|.+.+.... .+.++.+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 345566678899999998431 122223 3444443322 2 5678888888776543 2344444
No 449
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.85 E-value=0.042 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999985
No 450
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.85 E-value=0.31 Score=50.39 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=37.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEA 260 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 260 (938)
.-.++.|.|.+|+|||++|.+++.+.-. .+=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 4569999999999999999988765221 2124677877665 556666666543
No 451
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.85 E-value=0.3 Score=52.10 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=48.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCCcccHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVS-DNFDEFRIAKAIIEALEGS-------APNLGELQ---- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 272 (938)
.-..++|+|..|+|||||.+.+..... -+..+..-+. ...+..++.......-... ..+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 345789999999999999999987522 1223333333 2334455555444432211 11111111
Q ss_pred -HHHHHHHHhh--cCceeeEEeCCC
Q 035647 273 -SLLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 273 -~~~~~l~~~l--~~~~~LlVlDdv 294 (938)
...-.+.+++ +++..|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1223344554 488999999998
No 452
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.84 E-value=0.037 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 453
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.83 E-value=0.044 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998775
No 454
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.82 E-value=0.13 Score=56.05 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=46.3
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 254 (938)
.++|+++.+..+...+... +-+.+.|.+|+|||+||+.++.. .. ...++|.+.......++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhc
Confidence 4889999888888877643 35899999999999999999985 22 344566666666555554
No 455
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.77 E-value=0.061 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4669999999999999999999875
No 456
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.77 E-value=0.044 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999875
No 457
>PF13479 AAA_24: AAA domain
Probab=93.76 E-value=0.16 Score=51.26 Aligned_cols=21 Identities=43% Similarity=0.384 Sum_probs=18.4
Q ss_pred eEEEEEEecCCChHHHHHHHH
Q 035647 206 IQIISMVGMGGIGKTTLAQFV 226 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v 226 (938)
.-.+.|+|.+|+||||+|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 346899999999999999776
No 458
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.053 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++++|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999887764
No 459
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.71 E-value=0.04 Score=55.07 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|.+|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999774
No 460
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.70 E-value=0.2 Score=48.23 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC
Q 035647 181 VRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD 246 (938)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 246 (938)
++|....++++.+.+..-.. ...-|.|+|..|+||+.+|+.+.+. ....-...+-|+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAA 60 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTT
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhh
Confidence 47888888888887754322 2245679999999999999999884 111223344555554
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.70 E-value=0.28 Score=57.53 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+-..++|+|..|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999764
No 462
>PRK08149 ATP synthase SpaL; Validated
Probab=93.69 E-value=0.31 Score=53.92 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=50.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCCcccHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVS-DNFDEFRIAKAIIEALEGS-------APNLGELQ---- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 272 (938)
+-..++|+|.+|+|||||+..++.... -+.++...+. ...++.++........... ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 446899999999999999999987522 2333333333 2234455555555432211 11111111
Q ss_pred -HHHHHHHHhh--cCceeeEEeCCC
Q 035647 273 -SLLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 273 -~~~~~l~~~l--~~~~~LlVlDdv 294 (938)
.....+.+++ ++++.|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1233344555 489999999999
No 463
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.68 E-value=0.52 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|.|||||++.++.-
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3458999999999999999999874
No 464
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.68 E-value=0.043 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++.|.|.+|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 465
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.62 E-value=0.29 Score=54.22 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=50.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGS-------APNLGELQ---- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 272 (938)
+-+.++|+|..|+|||||++++++... .+.++++-+++.. .+.++....+..-+.. ..+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999999997522 2344555554433 3334443333321110 11111111
Q ss_pred -HHHHHHHHhh--cCceeeEEeCCC
Q 035647 273 -SLLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 273 -~~~~~l~~~l--~~~~~LlVlDdv 294 (938)
...-.+.+++ +++..|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1233355565 488999999999
No 466
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.61 E-value=0.051 Score=50.86 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 035647 208 IISMVGMGGIGKTTLAQFVY 227 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~ 227 (938)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 467
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.58 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999853
No 468
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.57 E-value=0.25 Score=54.97 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=53.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGS-------APNLGELQ---- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 272 (938)
+-+.++|.|.+|+|||||+.+++....... =+.++++-+++.. .+.++...+...-... ..+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999998876522111 1356667665433 3445555555431110 11111111
Q ss_pred -HHHHHHHHhh---cCceeeEEeCCC
Q 035647 273 -SLLQHIYASI---VGKRFFLVLDDV 294 (938)
Q Consensus 273 -~~~~~l~~~l---~~~~~LlVlDdv 294 (938)
...-.+.+++ +++++|+++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1233456666 578999999999
No 469
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.57 E-value=0.081 Score=59.42 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=47.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEE-EeCCCC-CHHHHHHHHHHHhc-----CCCCCccc----HHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWV-CVSDNF-DEFRIAKAIIEALE-----GSAPNLGE----LQS 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv-~~~~~~-~~~~~~~~i~~~l~-----~~~~~~~~----~~~ 273 (938)
.-+.+.|+|.+|+|||||++.+++... ..+-+..++| -+.+.. .+.+ +-+.+. ........ ...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtd----m~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTD----MQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHH----HHHhccceEEEECCCCCHHHHHHHHH
Confidence 456789999999999999999998521 1122333333 333322 2222 233331 11111111 112
Q ss_pred HHHHHHHhh--cCceeeEEeCCC
Q 035647 274 LLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 274 ~~~~l~~~l--~~~~~LlVlDdv 294 (938)
+.-.+.+++ .++.+||++|++
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCc
Confidence 333344555 488999999999
No 470
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.55 E-value=0.3 Score=50.72 Aligned_cols=88 Identities=10% Similarity=0.143 Sum_probs=45.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc-
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV- 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 283 (938)
..+++++|.+|+||||+++.+.... ...=..+.+++..... ....-+....+.++.+.....+...+.+.+.. ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY-FKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH-HHh
Confidence 4699999999999999999887642 1211345556544221 11112222233333221111233333333332 33
Q ss_pred -CceeeEEeCCCCC
Q 035647 284 -GKRFFLVLDDVWT 296 (938)
Q Consensus 284 -~~~~LlVlDdv~~ 296 (938)
.+.=++++|....
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2456889998854
No 471
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.55 E-value=0.7 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 035647 209 ISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~ 229 (938)
+++.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
No 472
>PRK13949 shikimate kinase; Provisional
Probab=93.55 E-value=0.051 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 473
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.51 E-value=0.63 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.++++.|+.|+|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 474
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.51 E-value=0.21 Score=59.29 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=56.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
.-+++-|+|.+|+||||||.+++.... ..=..++|++....++. ..+++++.+.. .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 567999999999999999988765422 22356789988776663 36666765421 2223344555555
Q ss_pred Hhhc-CceeeEEeCCCC
Q 035647 280 ASIV-GKRFFLVLDDVW 295 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv~ 295 (938)
..++ ++.-|+|+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 5554 456699999983
No 475
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.51 E-value=0.046 Score=51.48 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999975
No 476
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.42 E-value=0.05 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 477
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.42 E-value=0.15 Score=52.55 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=48.3
Q ss_pred ceEEEEEEecCCChHHHHH-HHHHcccccccCCCeE-EEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHHH-
Q 035647 205 AIQIISMVGMGGIGKTTLA-QFVYNDSCVINNFDKR-MWVCVSDNF-DEFRIAKAIIEALEGS-------APNLGELQS- 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 273 (938)
+-+.++|.|.+|+|||+|| ..+.+. ..-+.+ +++-+++.. .+.++.+++.+.-... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3457899999999999996 666653 123444 555555543 3445555554321110 111111111
Q ss_pred ----HHHHHHHhh--cCceeeEEeCCC
Q 035647 274 ----LLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 274 ----~~~~l~~~l--~~~~~LlVlDdv 294 (938)
..-.+.+++ +++..|+|+||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122344444 378999999999
No 478
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.41 E-value=0.12 Score=50.94 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=30.8
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
++.|.|.+|+|||+||.+++...- ..=..++|++... +.+.+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999998877522 2224577887654 44444433
No 479
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.40 E-value=0.39 Score=54.29 Aligned_cols=40 Identities=30% Similarity=0.283 Sum_probs=30.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD 246 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 246 (938)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC
Confidence 567999999999999999999876522 2223578887654
No 480
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.39 E-value=0.074 Score=65.29 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=91.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccc--ccccCCCeEEEEEeCCCC-----CHH-HHHHHHHHHhcCCCCCcccHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDS--CVINNFDKRMWVCVSDNF-----DEF-RIAKAIIEALEGSAPNLGELQSLLQ 276 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~f~~~~wv~~~~~~-----~~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 276 (938)
...-+.|+|.+|+||||+.+.++-.. +....=+..+++.+.... ... .+..-+...+....... +...
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~----~~~~ 296 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAK----QLIE 296 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcc----hhhH
Confidence 34579999999999999998886541 111111334444433110 111 22233333333322222 1222
Q ss_pred HHHHhhcCceeeEEeCCCCCCCcCCchh----hhhhhccCCCCCEEEEEcCChHHHHhcccCCeEecCCCChHHHHHHHH
Q 035647 277 HIYASIVGKRFFLVLDDVWTDDYSKWEP----FHNCLMHGLRGSKILVTTRNEKVVRMMESTDVISIKELSEQECWWLFK 352 (938)
Q Consensus 277 ~l~~~l~~~~~LlVlDdv~~~~~~~~~~----l~~~l~~~~~gs~iivTtr~~~~~~~~~~~~~~~l~~L~~~ea~~lf~ 352 (938)
...++++..++++.+|.+.......-.. +...+ ..-+.++||+|+|.............+++..+.++.-.....
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 2256778899999999984422111111 22222 223578999999976544443334455666666555443222
Q ss_pred --------HhhcCCCCCCCchhHHH---HHHHHHhhcCCchhHHHHHHhhhc
Q 035647 353 --------RFAFFGRPPSECEQLVE---IGQKIVGNCKGLPLAAKTIGSLLR 393 (938)
Q Consensus 353 --------~~~~~~~~~~~~~~~~~---~~~~i~~~~~g~PLai~~~a~~l~ 393 (938)
...++............ -...-++.....|+++.+.+..-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 11111111000001111 112233444888999988885554
No 481
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.39 E-value=0.27 Score=54.40 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+.+|.++|.+|+||||++.+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888764
No 482
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.37 E-value=0.46 Score=56.19 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-..++|+|..|.|||||++.+...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999764
No 483
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.37 E-value=0.36 Score=53.83 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=52.1
Q ss_pred ceEEEEEEecCCChHHHHH-HHHHcccccc-----cCCCeEEEEEeCCCCCHHHHHHHHHHHhc-CC-------CCCccc
Q 035647 205 AIQIISMVGMGGIGKTTLA-QFVYNDSCVI-----NNFDKRMWVCVSDNFDEFRIAKAIIEALE-GS-------APNLGE 270 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~~~~ 270 (938)
+-+.++|.|..|+|||+|| -.+.+...+. ++-..++++.+++..+.-.-+...++.-+ .. ..+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 6667764221 23456788888775543322333333322 11 011111
Q ss_pred HHH-----HHHHHHHhh--cCceeeEEeCCC
Q 035647 271 LQS-----LLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 271 ~~~-----~~~~l~~~l--~~~~~LlVlDdv 294 (938)
..+ ..-.+.+++ +++..|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111 122344555 388999999999
No 484
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.36 E-value=0.058 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++|+|+|+.|+|||||++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999984
No 485
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.36 E-value=0.49 Score=56.26 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+-..++|+|..|.|||||++.+..-
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999753
No 486
>PRK13947 shikimate kinase; Provisional
Probab=93.35 E-value=0.055 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3899999999999999999875
No 487
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.35 E-value=0.046 Score=65.84 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+.++++|+|+.|.||||+.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999988653
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.35 E-value=0.25 Score=54.75 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=50.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcC-------CCCCcccHHH---
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKAIIEALEG-------SAPNLGELQS--- 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 273 (938)
.-..++|+|..|+|||||++.++... +.+..+++.+++ ...+.+...+....-.. ...+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44689999999999999999998752 234445554443 33444444444321100 0111111221
Q ss_pred --HHHHHHHhh--cCceeeEEeCCC
Q 035647 274 --LLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 274 --~~~~l~~~l--~~~~~LlVlDdv 294 (938)
..-.+.+++ ++++.|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 223355555 388999999999
No 489
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.34 E-value=0.58 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999875
No 490
>PRK08006 replicative DNA helicase; Provisional
Probab=93.34 E-value=3.8 Score=46.64 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=38.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE 262 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 262 (938)
....+.|-|.+|+|||++|..++...-.+.. ..++++ +-+.+.+++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g-~~V~~f--SlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQD-KPVLIF--SLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC-CeEEEE--eccCCHHHHHHHHHHHhc
Confidence 4568999999999999999988765221222 234444 344677888888876654
No 491
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.33 E-value=0.09 Score=49.55 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 186 EEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 186 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+.++++.+.|. -++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~---------~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK---------GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT---------TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc---------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 45677777773 269999999999999999999986
No 492
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.33 E-value=0.063 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEecCCChHHHHHHHHHccc
Q 035647 209 ISMVGMGGIGKTTLAQFVYNDS 230 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~~ 230 (938)
|.|+|..|+|||||.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998763
No 493
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.31 E-value=0.68 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.++.-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 494
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.29 E-value=0.13 Score=60.27 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=53.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
..++|.++.++.+...+.. .+.+.++|.+|+||||+|+.+.+.. ...+++..+|..- ...+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 4689999998888877742 1368999999999999999998752 2334577788655 3336666777776
Q ss_pred HHhc
Q 035647 259 EALE 262 (938)
Q Consensus 259 ~~l~ 262 (938)
..++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6554
No 495
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.29 E-value=0.29 Score=54.75 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCcccHH----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGS-------APNLGELQ---- 272 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 272 (938)
+-+.++|.|.+|+|||||+.++++.... .+-+.++++-+++.. .+.++...+...-... ..+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4568999999999999999998876321 244677777665433 3445555554321110 11111111
Q ss_pred -HHHHHHHHhhc---CceeeEEeCCC
Q 035647 273 -SLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 273 -~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
...-.+.++++ +++.|+++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12344556663 78999999999
No 496
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.27 E-value=0.059 Score=51.78 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=18.4
Q ss_pred EEEEecCCChHHHHHHHHHcc
Q 035647 209 ISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~ 229 (938)
|.|.|.+|+|||||++.++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 497
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.26 E-value=0.63 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+-..++|+|..|.|||||++.+..-
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999763
No 498
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.26 E-value=0.75 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|.|||||++.++.-
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 499
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.25 E-value=0.3 Score=51.06 Aligned_cols=55 Identities=24% Similarity=0.177 Sum_probs=39.0
Q ss_pred CCccccchHHHHH---HHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC
Q 035647 178 VSEVRGRDEEMNI---LKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF 236 (938)
Q Consensus 178 ~~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 236 (938)
...+||..+..+. |+++.... .-.-+.|.++|++|.|||+||-.+.+..-....|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~g----k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQG----KMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhC----cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 4578998766553 45555332 2256899999999999999999999864334445
No 500
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.23 E-value=0.072 Score=52.37 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=28.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEe
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCV 244 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 244 (938)
.+++.|+|+.|+|||||+++++.+ ....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeecc
Confidence 368999999999999999999985 4456655555443
Done!