Query 035647
Match_columns 938
No_of_seqs 454 out of 4089
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.6E-46 1.6E-50 432.8 25.7 316 182-523 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-37 4.5E-42 362.3 17.9 285 180-514 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 8.9E-36 3.1E-40 385.8 25.1 312 176-521 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.4E-33 1.2E-37 330.4 26.1 307 177-519 122-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 4.4E-27 1.5E-31 286.1 10.2 358 542-936 269-719 (768)
6 3rgz_A Protein brassinosteroid 99.9 2.3E-25 7.9E-30 271.0 16.3 373 542-936 200-695 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 4.3E-25 1.5E-29 266.1 14.4 133 757-902 646-786 (876)
8 4eco_A Uncharacterized protein 99.9 9.8E-25 3.3E-29 259.1 16.9 312 557-902 198-576 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 2.2E-24 7.5E-29 259.9 19.4 250 540-821 446-746 (876)
10 4eco_A Uncharacterized protein 99.9 2.9E-25 9.9E-30 263.7 10.9 356 542-933 81-578 (636)
11 3t6q_A CD180 antigen; protein- 99.9 2.9E-24 1E-28 255.4 18.4 383 542-935 33-537 (606)
12 3vq2_A TLR4, TOLL-like recepto 99.9 9.8E-24 3.3E-28 250.9 21.8 359 541-935 31-487 (606)
13 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-23 7.8E-28 244.7 18.6 136 542-680 26-172 (549)
14 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-23 5.5E-28 249.0 17.1 116 540-658 54-179 (606)
15 2z63_A TOLL-like receptor 4, v 99.9 5.5E-24 1.9E-28 251.3 12.5 378 542-936 28-533 (570)
16 3v47_A TOLL-like receptor 5B a 99.9 1.2E-23 4.1E-28 240.8 14.8 322 542-903 30-406 (455)
17 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-23 9.2E-28 242.1 16.6 355 542-936 21-483 (520)
18 1o6v_A Internalin A; bacterial 99.9 1.2E-22 4.1E-27 232.6 21.2 242 542-813 46-298 (466)
19 3t6q_A CD180 antigen; protein- 99.9 1.9E-23 6.4E-28 248.5 14.9 366 545-935 15-463 (606)
20 4fmz_A Internalin; leucine ric 99.9 3.9E-23 1.3E-27 227.3 15.6 296 541-902 43-343 (347)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-22 5.5E-27 237.5 18.6 358 542-936 52-512 (562)
22 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-22 4.7E-27 249.2 18.8 129 540-670 22-162 (844)
23 3o6n_A APL1; leucine-rich repe 99.9 4.3E-23 1.5E-27 230.8 12.7 300 541-906 44-353 (390)
24 1ziw_A TOLL-like receptor 3; i 99.9 3.2E-22 1.1E-26 241.2 20.6 126 542-670 25-159 (680)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-22 6.2E-27 235.1 17.5 119 545-670 3-129 (520)
26 2id5_A Lingo-1, leucine rich r 99.9 2.1E-22 7.2E-27 231.7 17.1 290 542-904 32-332 (477)
27 3oja_B Anopheles plasmodium-re 99.9 6.1E-23 2.1E-27 242.4 11.6 300 541-906 50-359 (597)
28 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-22 1.9E-26 224.9 19.0 333 541-936 41-389 (457)
29 2id5_A Lingo-1, leucine rich r 99.9 4.2E-22 1.4E-26 229.3 15.9 312 545-935 14-334 (477)
30 4fmz_A Internalin; leucine ric 99.9 7.4E-22 2.5E-26 217.1 15.9 276 540-879 64-344 (347)
31 1ziw_A TOLL-like receptor 3; i 99.9 6.7E-22 2.3E-26 238.4 15.3 66 864-934 401-467 (680)
32 1o6v_A Internalin A; bacterial 99.9 2.7E-21 9.4E-26 221.3 19.3 299 541-904 67-387 (466)
33 3bz5_A Internalin-J, INLJ; leu 99.9 2.3E-21 7.7E-26 220.0 17.6 307 557-935 34-353 (457)
34 3j0a_A TOLL-like receptor 5; m 99.9 6.2E-21 2.1E-25 234.5 21.5 343 545-935 7-415 (844)
35 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-21 7.8E-26 227.6 15.8 117 547-668 10-135 (549)
36 3oja_B Anopheles plasmodium-re 99.9 2E-21 6.7E-26 229.5 15.2 278 539-880 72-357 (597)
37 4fcg_A Uncharacterized protein 99.9 2.7E-21 9.3E-26 209.7 15.0 226 591-902 81-311 (328)
38 3o6n_A APL1; leucine-rich repe 99.9 2.9E-21 1E-25 215.8 15.7 278 539-880 66-351 (390)
39 2z63_A TOLL-like receptor 4, v 99.9 1E-21 3.5E-26 231.8 12.2 120 546-670 11-138 (570)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.8E-21 1.3E-25 225.8 16.8 120 544-670 33-160 (562)
41 3v47_A TOLL-like receptor 5B a 99.8 4E-21 1.4E-25 219.8 15.6 318 539-885 51-412 (455)
42 2ft3_A Biglycan; proteoglycan, 99.8 2.8E-21 9.7E-26 210.7 11.6 118 542-666 33-157 (332)
43 4fcg_A Uncharacterized protein 99.8 2.3E-20 7.8E-25 202.4 17.4 226 563-878 79-311 (328)
44 1xku_A Decorin; proteoglycan, 99.8 9.7E-21 3.3E-25 206.4 13.2 290 542-931 31-329 (330)
45 4g8a_A TOLL-like receptor 4; l 99.8 2.6E-20 8.8E-25 223.0 15.2 127 541-670 51-187 (635)
46 1jl5_A Outer protein YOPM; leu 99.8 3E-20 1E-24 210.5 14.4 341 542-935 11-410 (454)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-21 8.1E-26 208.9 4.6 102 542-663 50-156 (313)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-20 5.2E-25 202.6 9.0 222 539-815 73-304 (313)
49 2ft3_A Biglycan; proteoglycan, 99.8 2.1E-19 7.2E-24 195.9 15.4 268 541-878 53-330 (332)
50 1xku_A Decorin; proteoglycan, 99.8 2.8E-19 9.5E-24 194.8 16.3 268 542-878 52-329 (330)
51 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-18 9.7E-23 200.1 17.0 252 542-904 40-296 (622)
52 1jl5_A Outer protein YOPM; leu 99.8 3E-18 1E-22 194.1 16.3 320 563-935 9-371 (454)
53 2z80_A TOLL-like receptor 2, v 99.8 1.6E-18 5.6E-23 190.6 13.1 264 547-904 36-313 (353)
54 4g8a_A TOLL-like receptor 4; l 99.8 3.5E-18 1.2E-22 204.4 16.3 109 539-650 73-190 (635)
55 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-17 4.5E-22 194.5 17.3 254 565-935 40-298 (622)
56 3zyj_A Leucine-rich repeat-con 99.7 1.2E-17 4.1E-22 189.5 15.6 233 598-904 55-291 (440)
57 3zyi_A Leucine-rich repeat-con 99.7 7.6E-18 2.6E-22 191.8 13.4 237 544-852 56-301 (452)
58 2z66_A Variable lymphocyte rec 99.7 3.1E-18 1.1E-22 184.3 9.6 235 598-904 19-260 (306)
59 3zyi_A Leucine-rich repeat-con 99.7 1.8E-17 6.3E-22 188.7 15.2 233 598-904 66-302 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.7 3.9E-19 1.3E-23 192.1 0.5 133 752-905 141-275 (317)
61 2z66_A Variable lymphocyte rec 99.7 2.9E-18 1E-22 184.5 7.3 111 546-662 11-132 (306)
62 3ogk_B Coronatine-insensitive 99.7 7.9E-19 2.7E-23 208.0 2.0 372 542-937 112-529 (592)
63 3zyj_A Leucine-rich repeat-con 99.7 3E-17 1E-21 186.2 14.8 256 600-934 34-292 (440)
64 2z80_A TOLL-like receptor 2, v 99.7 8.5E-18 2.9E-22 184.9 8.2 264 598-936 43-316 (353)
65 3oja_A Leucine-rich immune mol 99.7 1.7E-17 5.8E-22 189.9 10.2 214 609-905 34-250 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-18 3.8E-23 188.5 -1.2 161 709-905 138-299 (317)
67 3oja_A Leucine-rich immune mol 99.7 6E-18 2.1E-22 193.6 3.6 218 602-900 51-270 (487)
68 1wwl_A Monocyte differentiatio 99.7 7.4E-18 2.5E-22 181.6 1.5 158 755-936 149-311 (312)
69 1ozn_A Reticulon 4 receptor; N 99.7 2.8E-16 9.5E-21 167.1 12.9 136 750-904 100-237 (285)
70 1wwl_A Monocyte differentiatio 99.7 2.4E-17 8.2E-22 177.6 4.2 59 607-665 93-158 (312)
71 1z7x_W Ribonuclease inhibitor; 99.7 1.7E-19 6E-24 206.6 -13.8 140 752-904 253-410 (461)
72 2xwt_C Thyrotropin receptor; s 99.6 1.7E-15 5.8E-20 156.3 16.0 132 750-904 100-238 (239)
73 2qen_A Walker-type ATPase; unk 99.6 7.9E-15 2.7E-19 161.1 21.5 297 176-515 9-349 (350)
74 1z7x_W Ribonuclease inhibitor; 99.6 2.4E-18 8.2E-23 197.1 -7.8 364 542-936 3-413 (461)
75 1p9a_G Platelet glycoprotein I 99.6 2.4E-15 8.3E-20 159.6 16.0 200 605-904 6-207 (290)
76 1ozn_A Reticulon 4 receptor; N 99.6 2.4E-16 8.2E-21 167.6 7.4 214 545-813 14-236 (285)
77 1w5s_A Origin recognition comp 99.6 6.1E-15 2.1E-19 165.9 18.4 303 178-494 21-372 (412)
78 1h6u_A Internalin H; cell adhe 99.6 1E-15 3.5E-20 164.2 11.0 198 605-886 37-234 (308)
79 2fna_A Conserved hypothetical 99.6 5.4E-14 1.8E-18 154.8 23.3 292 177-514 11-356 (357)
80 3ogk_B Coronatine-insensitive 99.6 5.1E-17 1.7E-21 192.4 -1.5 139 749-903 372-524 (592)
81 1h6u_A Internalin H; cell adhe 99.6 2.6E-15 8.9E-20 161.1 9.2 193 542-819 41-233 (308)
82 2o6q_A Variable lymphocyte rec 99.6 2.7E-14 9.1E-19 150.3 16.7 149 610-812 17-167 (270)
83 2ast_B S-phase kinase-associat 99.6 4.2E-16 1.4E-20 170.2 2.5 248 610-936 48-308 (336)
84 3rfs_A Internalin B, repeat mo 99.6 3.5E-15 1.2E-19 157.1 9.3 210 605-893 37-247 (272)
85 2ast_B S-phase kinase-associat 99.5 6.2E-16 2.1E-20 168.8 1.8 253 544-889 49-314 (336)
86 1p9a_G Platelet glycoprotein I 99.5 5.8E-15 2E-19 156.6 8.9 196 542-813 10-206 (290)
87 2o6q_A Variable lymphocyte rec 99.5 3.4E-14 1.2E-18 149.4 13.2 185 598-852 28-216 (270)
88 2p1m_B Transport inhibitor res 99.5 5.3E-16 1.8E-20 183.8 -0.8 123 542-664 105-243 (594)
89 2z62_A TOLL-like receptor 4, v 99.5 1.4E-14 4.7E-19 153.1 10.0 140 598-791 19-161 (276)
90 2z62_A TOLL-like receptor 4, v 99.5 1.8E-14 6.1E-19 152.2 10.8 180 581-813 20-211 (276)
91 3rfs_A Internalin B, repeat mo 99.5 2E-14 6.9E-19 151.3 10.4 180 604-858 58-239 (272)
92 2xwt_C Thyrotropin receptor; s 99.5 1.3E-13 4.3E-18 142.2 16.2 196 610-880 32-238 (239)
93 3qfl_A MLA10; coiled-coil, (CC 99.5 1.1E-14 3.6E-19 128.4 6.8 81 9-89 1-83 (115)
94 4ay9_X Follicle-stimulating ho 99.5 4.2E-14 1.4E-18 154.8 12.9 230 598-901 21-255 (350)
95 2ca6_A RAN GTPase-activating p 99.5 5.8E-16 2E-20 172.5 -3.2 132 755-903 159-314 (386)
96 2ca6_A RAN GTPase-activating p 99.5 5.6E-16 1.9E-20 172.6 -3.6 213 555-813 22-285 (386)
97 4glp_A Monocyte differentiatio 99.5 4.1E-14 1.4E-18 152.1 7.2 189 600-853 106-306 (310)
98 1h6t_A Internalin B; cell adhe 99.5 6.2E-14 2.1E-18 148.9 8.3 169 605-851 42-210 (291)
99 2p1m_B Transport inhibitor res 99.5 3.2E-15 1.1E-19 177.1 -2.5 334 542-905 130-519 (594)
100 4glp_A Monocyte differentiatio 99.4 1.7E-13 5.7E-18 147.4 9.7 132 750-903 164-305 (310)
101 4ay9_X Follicle-stimulating ho 99.4 4.9E-13 1.7E-17 146.3 12.9 102 546-670 13-118 (350)
102 1m9s_A Internalin B; cell inva 99.4 2.7E-13 9.1E-18 158.0 11.4 164 588-813 40-208 (605)
103 1m9s_A Internalin B; cell inva 99.4 1.2E-13 4.2E-18 160.9 8.3 171 605-853 39-209 (605)
104 2qby_B CDC6 homolog 3, cell di 99.4 2.5E-11 8.6E-16 134.8 25.8 297 178-495 19-341 (384)
105 1h6t_A Internalin B; cell adhe 99.4 2.4E-13 8.2E-18 144.3 8.8 148 605-813 64-211 (291)
106 2v1u_A Cell division control p 99.4 1.7E-11 5.9E-16 136.3 23.1 297 178-494 18-352 (387)
107 3m19_A Variable lymphocyte rec 99.4 6.4E-13 2.2E-17 137.9 10.6 61 751-812 103-165 (251)
108 1fnn_A CDC6P, cell division co 99.4 3E-11 1E-15 134.5 24.2 299 178-495 16-353 (389)
109 3goz_A Leucine-rich repeat-con 99.4 3.6E-14 1.2E-18 156.3 -0.4 67 580-647 11-94 (362)
110 3goz_A Leucine-rich repeat-con 99.4 4.9E-14 1.7E-18 155.1 0.5 100 548-650 4-126 (362)
111 3cvr_A Invasion plasmid antige 99.4 7.8E-13 2.7E-17 152.2 10.2 189 610-886 60-248 (571)
112 4ezg_A Putative uncharacterize 99.3 2.7E-12 9.4E-17 127.6 10.9 151 712-903 41-192 (197)
113 3m19_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 130.8 13.7 155 715-904 35-191 (251)
114 2qby_A CDC6 homolog 1, cell di 99.3 3.7E-11 1.3E-15 133.6 20.5 296 177-494 18-349 (386)
115 3cvr_A Invasion plasmid antige 99.3 2.1E-12 7.1E-17 148.7 9.8 168 598-856 71-245 (571)
116 4ezg_A Putative uncharacterize 99.3 4.1E-12 1.4E-16 126.4 10.6 154 754-936 43-196 (197)
117 1xeu_A Internalin C; cellular 99.3 1.1E-12 3.7E-17 136.9 6.6 153 598-813 31-183 (263)
118 1dce_A Protein (RAB geranylger 99.3 4.1E-14 1.4E-18 164.0 -5.6 122 756-899 442-567 (567)
119 1dce_A Protein (RAB geranylger 99.3 1.4E-13 4.8E-18 159.5 -2.4 33 562-597 346-378 (567)
120 1xeu_A Internalin C; cellular 99.2 3.2E-12 1.1E-16 133.3 5.6 167 607-852 17-183 (263)
121 2o6s_A Variable lymphocyte rec 99.2 2.4E-11 8.1E-16 122.1 10.3 50 612-664 10-60 (208)
122 1njg_A DNA polymerase III subu 99.2 1.1E-10 3.9E-15 120.5 14.4 197 179-392 23-231 (250)
123 4b8c_D Glucose-repressible alc 99.2 3.1E-12 1.1E-16 153.1 1.7 124 542-666 173-303 (727)
124 2v9t_B SLIT homolog 2 protein 99.2 5.7E-11 1.9E-15 120.2 8.9 148 612-813 14-163 (220)
125 3e6j_A Variable lymphocyte rec 99.1 2.2E-10 7.6E-15 116.6 13.1 131 754-904 39-171 (229)
126 2v70_A SLIT-2, SLIT homolog 2 99.1 1.2E-10 4.2E-15 117.7 10.7 132 754-904 31-165 (220)
127 2chg_A Replication factor C sm 99.1 4.9E-10 1.7E-14 113.9 15.2 185 179-389 17-204 (226)
128 2ell_A Acidic leucine-rich nuc 99.1 7.8E-11 2.7E-15 113.7 8.5 134 752-904 21-159 (168)
129 2v70_A SLIT-2, SLIT homolog 2 99.1 2.7E-10 9.3E-15 115.1 11.8 152 758-935 14-167 (220)
130 3e6j_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 114.3 13.2 133 713-881 38-172 (229)
131 2o6s_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 113.0 11.9 129 755-903 28-159 (208)
132 2v9t_B SLIT homolog 2 protein 99.1 4.5E-10 1.6E-14 113.5 12.2 131 755-904 32-164 (220)
133 2xot_A Amphoterin-induced prot 99.1 7.5E-11 2.6E-15 129.4 6.0 161 598-813 30-200 (361)
134 2ell_A Acidic leucine-rich nuc 99.1 1.5E-10 5.3E-15 111.6 7.4 124 542-670 24-161 (168)
135 2xot_A Amphoterin-induced prot 99.1 8.9E-11 3.1E-15 128.8 5.6 168 568-790 21-200 (361)
136 4b8c_D Glucose-repressible alc 99.0 4.1E-11 1.4E-15 143.4 2.7 116 551-670 210-330 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.0 1.9E-10 6.4E-15 111.9 6.7 137 750-906 14-154 (176)
138 2je0_A Acidic leucine-rich nuc 99.0 8.3E-11 2.8E-15 111.0 3.7 131 752-901 14-149 (149)
139 2je0_A Acidic leucine-rich nuc 99.0 1.5E-10 5.2E-15 109.1 4.3 118 542-664 17-148 (149)
140 1w8a_A SLIT protein; signaling 99.0 1.9E-09 6.5E-14 106.3 10.3 56 756-812 30-88 (192)
141 1ds9_A Outer arm dynein; leuci 98.9 4.5E-11 1.5E-15 118.9 -1.8 65 600-666 39-103 (198)
142 3sb4_A Hypothetical leucine ri 98.9 1.3E-09 4.5E-14 117.9 9.4 286 541-898 24-327 (329)
143 1sxj_B Activator 1 37 kDa subu 98.9 3.7E-09 1.3E-13 114.1 12.0 187 179-391 21-212 (323)
144 1hqc_A RUVB; extended AAA-ATPa 98.9 4.2E-09 1.4E-13 113.7 12.2 267 179-492 12-324 (324)
145 1a9n_A U2A', U2A'; complex (nu 98.9 1E-09 3.5E-14 106.7 5.3 120 542-667 19-151 (176)
146 2wfh_A SLIT homolog 2 protein 98.9 7.6E-09 2.6E-13 102.0 10.6 57 755-812 31-88 (193)
147 1w8a_A SLIT protein; signaling 98.8 1.6E-09 5.4E-14 106.9 5.1 51 612-665 11-63 (192)
148 2wfh_A SLIT homolog 2 protein 98.8 4.2E-09 1.4E-13 103.8 6.6 51 612-665 13-63 (193)
149 3te6_A Regulatory protein SIR3 98.8 6.9E-08 2.4E-12 101.3 15.5 173 180-356 21-212 (318)
150 1ds9_A Outer arm dynein; leuci 98.8 8.8E-11 3E-15 116.7 -6.6 128 611-794 25-155 (198)
151 1iqp_A RFCS; clamp loader, ext 98.7 3.1E-08 1.1E-12 107.0 11.8 185 179-392 25-215 (327)
152 2o6r_A Variable lymphocyte rec 98.7 6.3E-08 2.1E-12 94.0 12.4 125 757-903 9-135 (177)
153 2o6r_A Variable lymphocyte rec 98.7 1.2E-08 4.2E-13 99.1 6.8 120 545-669 10-137 (177)
154 2r9u_A Variable lymphocyte rec 98.6 2E-08 7E-13 96.9 5.6 102 545-669 15-118 (174)
155 3sb4_A Hypothetical leucine ri 98.6 1.9E-07 6.6E-12 100.7 13.9 262 542-875 49-328 (329)
156 1jr3_A DNA polymerase III subu 98.6 3E-07 1E-11 101.3 14.0 195 179-389 16-221 (373)
157 2chq_A Replication factor C sm 98.6 2.7E-07 9.3E-12 99.1 12.6 182 179-389 17-204 (319)
158 1jbk_A CLPB protein; beta barr 98.5 2.7E-07 9.2E-12 90.8 10.6 151 179-351 22-194 (195)
159 4fdw_A Leucine rich hypothetic 98.5 1.5E-06 5.1E-11 95.9 16.8 235 586-902 131-380 (401)
160 3g39_A Variable lymphocyte rec 98.5 1.1E-07 3.6E-12 91.6 6.4 104 544-670 11-116 (170)
161 3bos_A Putative DNA replicatio 98.5 3.2E-07 1.1E-11 94.1 10.1 175 179-390 28-218 (242)
162 4fdw_A Leucine rich hypothetic 98.4 1.9E-06 6.6E-11 95.0 15.0 237 559-878 130-380 (401)
163 2r9u_A Variable lymphocyte rec 98.4 1E-06 3.4E-11 84.9 10.7 102 757-879 14-116 (174)
164 1sxj_D Activator 1 41 kDa subu 98.4 1.7E-06 5.8E-11 94.3 13.6 194 179-388 37-234 (353)
165 3pfi_A Holliday junction ATP-d 98.4 5.6E-06 1.9E-10 89.6 16.9 179 178-389 28-227 (338)
166 3g39_A Variable lymphocyte rec 98.3 1.8E-06 6E-11 82.9 10.3 102 757-879 11-113 (170)
167 3pvs_A Replication-associated 98.3 6E-06 2.1E-10 91.8 14.8 177 179-387 26-213 (447)
168 2z4s_A Chromosomal replication 98.3 9.2E-06 3.2E-10 90.6 15.7 161 206-387 130-304 (440)
169 2ra8_A Uncharacterized protein 98.3 8.7E-08 3E-12 103.7 -1.1 144 749-903 166-318 (362)
170 1sxj_A Activator 1 95 kDa subu 98.2 5.7E-06 2E-10 94.6 13.9 196 179-390 39-254 (516)
171 4fs7_A Uncharacterized protein 98.2 9.8E-06 3.4E-10 89.6 14.7 297 542-902 71-376 (394)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.2 3.2E-05 1.1E-09 80.1 17.4 182 179-383 6-215 (262)
173 2p65_A Hypothetical protein PF 98.2 3.6E-06 1.2E-10 82.1 9.0 45 179-229 22-66 (187)
174 3h4m_A Proteasome-activating n 98.2 1.6E-05 5.6E-10 83.5 14.7 184 178-387 16-229 (285)
175 3uk6_A RUVB-like 2; hexameric 98.2 1.1E-05 3.6E-10 88.5 13.5 196 178-388 43-302 (368)
176 1sxj_E Activator 1 40 kDa subu 98.2 1E-05 3.5E-10 88.1 12.9 196 179-389 14-237 (354)
177 2ra8_A Uncharacterized protein 98.2 2.3E-07 8E-12 100.3 -0.4 173 747-936 131-322 (362)
178 3u61_B DNA polymerase accessor 98.1 1.5E-05 5.1E-10 85.6 12.2 177 178-386 25-213 (324)
179 1l8q_A Chromosomal replication 98.1 3.2E-05 1.1E-09 82.9 14.5 155 205-383 36-202 (324)
180 3syl_A Protein CBBX; photosynt 98.1 2.2E-05 7.6E-10 83.6 12.9 159 180-356 32-218 (309)
181 1d2n_A N-ethylmaleimide-sensit 98.1 5.3E-05 1.8E-09 78.9 15.4 171 179-380 33-228 (272)
182 2ifg_A High affinity nerve gro 98.0 1.4E-05 4.7E-10 86.9 10.4 101 758-879 11-114 (347)
183 1a5t_A Delta prime, HOLB; zinc 98.0 6.5E-05 2.2E-09 80.6 15.3 171 185-389 8-205 (334)
184 2ifg_A High affinity nerve gro 98.0 4.8E-06 1.6E-10 90.5 6.2 101 547-670 13-117 (347)
185 1sxj_C Activator 1 40 kDa subu 98.0 3.5E-05 1.2E-09 83.2 12.9 176 179-386 25-209 (340)
186 3n70_A Transport activator; si 98.0 4.8E-06 1.6E-10 77.4 5.2 115 180-325 2-116 (145)
187 3eie_A Vacuolar protein sortin 98.0 0.0001 3.5E-09 78.7 15.4 187 178-389 17-228 (322)
188 4fs7_A Uncharacterized protein 97.9 9.4E-05 3.2E-09 81.7 15.5 303 559-931 65-376 (394)
189 3un9_A NLR family member X1; l 97.9 1.8E-07 6.1E-12 102.2 -6.6 166 714-904 71-251 (372)
190 3ec2_A DNA replication protein 97.9 1.9E-05 6.5E-10 76.4 7.8 122 184-325 19-143 (180)
191 3d8b_A Fidgetin-like protein 1 97.9 0.00011 3.7E-09 79.7 14.6 188 179-391 84-297 (357)
192 3e4g_A ATP synthase subunit S, 97.9 2.6E-06 9E-11 80.5 1.0 67 839-907 83-154 (176)
193 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00062 2.1E-08 72.4 19.6 188 179-390 12-224 (322)
194 2qp9_X Vacuolar protein sortin 97.8 0.00012 4.2E-09 79.1 13.8 184 179-389 51-261 (355)
195 3un9_A NLR family member X1; l 97.8 1.1E-06 3.6E-11 96.1 -3.1 43 748-790 204-250 (372)
196 2w58_A DNAI, primosome compone 97.8 2.3E-05 7.9E-10 77.5 7.0 126 180-325 26-159 (202)
197 1qvr_A CLPB protein; coiled co 97.8 6.1E-05 2.1E-09 91.7 12.0 154 179-354 170-344 (854)
198 3b9p_A CG5977-PA, isoform A; A 97.8 0.00054 1.8E-08 72.2 17.7 183 179-388 21-232 (297)
199 2gno_A DNA polymerase III, gam 97.7 0.00013 4.3E-09 76.8 11.3 149 183-355 1-152 (305)
200 3vfd_A Spastin; ATPase, microt 97.7 0.00045 1.5E-08 75.9 16.0 187 178-389 114-326 (389)
201 3pxg_A Negative regulator of g 97.7 0.00029 9.9E-09 79.2 14.1 147 179-355 180-338 (468)
202 4gt6_A Cell surface protein; l 97.7 0.00066 2.3E-08 74.8 16.8 108 775-904 261-369 (394)
203 2zan_A Vacuolar protein sortin 97.7 0.00092 3.1E-08 74.5 17.8 189 178-389 133-345 (444)
204 3cf0_A Transitional endoplasmi 97.6 0.00062 2.1E-08 71.8 15.1 180 179-383 15-222 (301)
205 4fcw_A Chaperone protein CLPB; 97.6 0.0002 7E-09 76.1 10.6 136 180-324 18-169 (311)
206 3co5_A Putative two-component 97.6 3.2E-05 1.1E-09 71.5 3.1 110 180-324 5-115 (143)
207 1ofh_A ATP-dependent HSL prote 97.5 0.00055 1.9E-08 72.6 12.6 51 179-229 15-73 (310)
208 4b4t_J 26S protease regulatory 97.5 0.0025 8.4E-08 68.5 17.3 178 179-382 148-354 (405)
209 3e4g_A ATP synthase subunit S, 97.5 0.00011 3.8E-09 69.4 6.1 18 839-856 137-154 (176)
210 4b4t_K 26S protease regulatory 97.5 0.0013 4.5E-08 71.7 15.5 52 178-229 171-229 (428)
211 3hu3_A Transitional endoplasmi 97.5 0.00069 2.4E-08 76.0 13.6 185 179-388 204-414 (489)
212 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00048 1.6E-08 83.0 13.2 157 179-355 186-362 (758)
213 2bjv_A PSP operon transcriptio 97.5 0.00019 6.4E-09 74.3 8.3 63 179-247 6-68 (265)
214 2kjq_A DNAA-related protein; s 97.4 9.5E-05 3.3E-09 68.6 4.6 87 206-324 36-124 (149)
215 1ojl_A Transcriptional regulat 97.4 0.00023 7.9E-09 75.0 7.8 47 179-229 2-48 (304)
216 4b4t_L 26S protease subunit RP 97.4 0.0032 1.1E-07 68.8 16.8 179 178-382 180-387 (437)
217 1lv7_A FTSH; alpha/beta domain 97.3 0.0022 7.5E-08 65.8 14.1 184 178-386 11-222 (257)
218 1in4_A RUVB, holliday junction 97.3 0.0011 3.8E-08 71.0 12.1 178 179-389 25-223 (334)
219 3pxi_A Negative regulator of g 97.3 0.00033 1.1E-08 84.2 8.6 156 179-355 491-675 (758)
220 2c9o_A RUVB-like 1; hexameric 97.3 0.00054 1.9E-08 76.8 9.3 50 179-229 37-86 (456)
221 3pxi_A Negative regulator of g 97.3 0.0017 5.9E-08 78.0 14.1 147 179-355 180-338 (758)
222 4b4t_H 26S protease regulatory 97.3 0.0053 1.8E-07 66.9 16.3 177 179-381 209-414 (467)
223 4b4t_M 26S protease regulatory 97.1 0.0019 6.5E-08 70.5 10.8 177 179-381 181-386 (434)
224 2ce7_A Cell division protein F 97.0 0.0085 2.9E-07 66.6 15.9 179 179-382 16-221 (476)
225 4b4t_I 26S protease regulatory 97.0 0.0064 2.2E-07 65.5 13.6 177 179-381 182-387 (437)
226 2r62_A Cell division protease 97.0 0.00026 8.7E-09 73.5 2.4 158 178-355 10-196 (268)
227 4h09_A Hypothetical leucine ri 96.9 0.0031 1.1E-07 69.0 11.3 72 542-618 46-122 (379)
228 2r44_A Uncharacterized protein 96.9 0.0042 1.4E-07 66.4 11.8 151 179-356 27-199 (331)
229 2qgz_A Helicase loader, putati 96.9 0.00065 2.2E-08 71.6 5.2 56 185-244 134-189 (308)
230 3m6a_A ATP-dependent protease 96.9 0.0046 1.6E-07 70.7 12.6 162 179-355 81-266 (543)
231 3t15_A Ribulose bisphosphate c 96.9 0.011 3.8E-07 61.7 14.3 25 205-229 35-59 (293)
232 1io0_A Tropomodulin; LRR prote 96.8 0.00019 6.6E-09 69.5 0.4 43 603-646 30-78 (185)
233 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0019 6.6E-08 77.7 9.0 135 179-324 458-607 (758)
234 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00063 2.1E-08 70.5 3.7 69 205-295 122-192 (331)
235 1qvr_A CLPB protein; coiled co 96.7 0.0032 1.1E-07 76.5 9.7 137 179-324 558-710 (854)
236 3cf2_A TER ATPase, transitiona 96.7 0.0095 3.2E-07 70.3 13.2 178 179-382 204-407 (806)
237 2cvh_A DNA repair and recombin 96.7 0.0058 2E-07 60.8 9.8 84 206-295 20-115 (220)
238 4gt6_A Cell surface protein; l 96.6 0.02 6.9E-07 62.8 14.8 302 543-902 65-388 (394)
239 2dhr_A FTSH; AAA+ protein, hex 96.4 0.036 1.2E-06 62.0 15.1 176 178-382 30-236 (499)
240 2b8t_A Thymidine kinase; deoxy 96.4 0.0022 7.5E-08 63.4 4.2 113 205-325 11-126 (223)
241 1io0_A Tropomodulin; LRR prote 96.3 0.0012 4.2E-08 63.8 2.0 106 542-666 36-161 (185)
242 1um8_A ATP-dependent CLP prote 96.3 0.017 5.6E-07 63.0 11.1 50 180-229 22-95 (376)
243 2x8a_A Nuclear valosin-contain 96.3 0.029 9.8E-07 57.8 12.3 126 209-355 47-191 (274)
244 3rw6_A Nuclear RNA export fact 96.2 0.0021 7.2E-08 65.5 3.0 60 753-813 168-231 (267)
245 3hr8_A Protein RECA; alpha and 96.1 0.013 4.6E-07 62.3 9.0 83 205-294 60-148 (356)
246 1n0w_A DNA repair protein RAD5 96.1 0.015 5E-07 58.9 9.1 89 206-295 24-129 (243)
247 4h09_A Hypothetical leucine ri 96.1 0.075 2.6E-06 57.8 15.2 128 751-901 213-342 (379)
248 1v5w_A DMC1, meiotic recombina 96.0 0.024 8.1E-07 60.6 10.7 89 205-294 121-228 (343)
249 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.012 4.1E-07 59.1 8.0 115 206-325 23-168 (235)
250 3rw6_A Nuclear RNA export fact 96.0 0.0039 1.3E-07 63.5 4.2 59 603-663 190-258 (267)
251 2z43_A DNA repair and recombin 96.0 0.02 6.9E-07 60.7 9.9 89 205-294 106-212 (324)
252 1g5t_A COB(I)alamin adenosyltr 96.0 0.0078 2.7E-07 57.6 5.9 116 207-325 29-163 (196)
253 2i1q_A DNA repair and recombin 96.0 0.016 5.5E-07 61.5 9.0 89 205-294 97-213 (322)
254 3io5_A Recombination and repai 95.9 0.02 6.7E-07 59.1 8.7 83 208-295 30-121 (333)
255 1xp8_A RECA protein, recombina 95.8 0.02 6.8E-07 61.4 8.9 84 205-295 73-162 (366)
256 1ypw_A Transitional endoplasmi 95.8 0.014 4.8E-07 70.0 8.2 156 179-355 204-385 (806)
257 1jr3_D DNA polymerase III, del 95.7 0.098 3.4E-06 55.9 13.7 157 205-387 17-183 (343)
258 1rz3_A Hypothetical protein rb 95.5 0.014 4.8E-07 57.1 5.6 44 183-229 2-45 (201)
259 2zr9_A Protein RECA, recombina 95.5 0.032 1.1E-06 59.6 8.7 84 205-295 60-149 (349)
260 1mv5_A LMRA, multidrug resista 95.4 0.08 2.7E-06 53.3 11.0 24 205-228 27-50 (243)
261 1u94_A RECA protein, recombina 95.3 0.03 1E-06 59.8 8.0 83 205-294 62-150 (356)
262 2orw_A Thymidine kinase; TMTK, 95.3 0.0031 1.1E-07 60.7 0.0 108 207-325 4-113 (184)
263 2pze_A Cystic fibrosis transme 95.2 0.12 4E-06 51.5 11.4 24 206-229 34-57 (229)
264 2px0_A Flagellar biosynthesis 95.2 0.034 1.2E-06 57.8 7.6 87 205-294 104-191 (296)
265 3bh0_A DNAB-like replicative h 95.1 0.073 2.5E-06 56.0 10.0 53 205-261 67-119 (315)
266 2cbz_A Multidrug resistance-as 95.0 0.073 2.5E-06 53.3 9.3 24 206-229 31-54 (237)
267 3lda_A DNA repair protein RAD5 94.9 0.091 3.1E-06 57.0 10.4 89 205-294 177-282 (400)
268 2ff7_A Alpha-hemolysin translo 94.9 0.058 2E-06 54.4 8.3 23 207-229 36-58 (247)
269 1pzn_A RAD51, DNA repair and r 94.9 0.082 2.8E-06 56.5 9.9 89 205-294 130-240 (349)
270 3c8u_A Fructokinase; YP_612366 94.9 0.019 6.6E-07 56.4 4.7 39 187-229 7-45 (208)
271 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.017 5.7E-07 64.7 4.6 43 179-229 22-64 (500)
272 4a74_A DNA repair and recombin 94.8 0.086 2.9E-06 52.6 9.2 46 205-250 24-73 (231)
273 1gvn_B Zeta; postsegregational 94.7 0.028 9.6E-07 58.3 5.5 42 187-229 15-56 (287)
274 4a1f_A DNAB helicase, replicat 94.6 0.074 2.5E-06 56.0 8.3 53 206-262 46-98 (338)
275 1qhx_A CPT, protein (chloramph 94.5 0.017 5.9E-07 55.1 3.0 23 207-229 4-26 (178)
276 1zp6_A Hypothetical protein AT 94.5 0.02 6.9E-07 55.4 3.5 25 205-229 8-32 (191)
277 1ly1_A Polynucleotide kinase; 94.5 0.019 6.6E-07 54.9 3.3 22 207-228 3-24 (181)
278 1odf_A YGR205W, hypothetical 3 94.4 0.032 1.1E-06 57.8 5.1 26 204-229 29-54 (290)
279 3tqc_A Pantothenate kinase; bi 94.4 0.087 3E-06 55.1 8.4 47 181-229 69-115 (321)
280 2p5t_B PEZT; postsegregational 94.4 0.031 1.1E-06 56.9 4.9 42 187-229 14-55 (253)
281 3lw7_A Adenylate kinase relate 94.4 0.019 6.5E-07 54.6 3.0 19 208-226 3-21 (179)
282 3kb2_A SPBC2 prophage-derived 94.3 0.02 7E-07 54.2 3.0 22 208-229 3-24 (173)
283 1vma_A Cell division protein F 94.3 0.14 4.7E-06 53.3 9.5 87 205-294 103-195 (306)
284 3vaa_A Shikimate kinase, SK; s 94.2 0.02 6.8E-07 55.9 2.8 24 206-229 25-48 (199)
285 3ice_A Transcription terminati 94.2 0.019 6.4E-07 60.7 2.6 96 190-294 163-270 (422)
286 3hws_A ATP-dependent CLP prote 94.2 0.032 1.1E-06 60.3 4.6 50 180-229 16-74 (363)
287 2r2a_A Uncharacterized protein 94.1 0.061 2.1E-06 52.1 6.0 21 208-228 7-27 (199)
288 3uie_A Adenylyl-sulfate kinase 94.1 0.027 9.4E-07 54.9 3.5 25 205-229 24-48 (200)
289 2rhm_A Putative kinase; P-loop 94.0 0.029 1E-06 54.3 3.6 25 205-229 4-28 (193)
290 2pjz_A Hypothetical protein ST 94.0 0.18 6.1E-06 51.3 9.5 23 207-229 31-53 (263)
291 3trf_A Shikimate kinase, SK; a 93.9 0.024 8.2E-07 54.5 2.7 24 206-229 5-28 (185)
292 1kgd_A CASK, peripheral plasma 93.9 0.024 8.3E-07 54.2 2.7 24 206-229 5-28 (180)
293 1kag_A SKI, shikimate kinase I 93.9 0.023 7.9E-07 53.9 2.4 23 207-229 5-27 (173)
294 3nh6_A ATP-binding cassette SU 93.9 0.085 2.9E-06 54.9 6.9 23 206-228 80-102 (306)
295 1knq_A Gluconate kinase; ALFA/ 93.8 0.035 1.2E-06 52.7 3.6 25 205-229 7-31 (175)
296 1sky_E F1-ATPase, F1-ATP synth 93.8 0.089 3E-06 57.6 7.1 87 207-294 152-254 (473)
297 1nks_A Adenylate kinase; therm 93.8 0.032 1.1E-06 54.0 3.3 23 207-229 2-24 (194)
298 1zuh_A Shikimate kinase; alpha 93.7 0.028 9.5E-07 53.1 2.6 25 205-229 6-30 (168)
299 1g8p_A Magnesium-chelatase 38 93.7 0.031 1.1E-06 60.1 3.3 46 178-229 23-68 (350)
300 1ixz_A ATP-dependent metallopr 93.7 0.046 1.6E-06 55.6 4.5 156 179-355 16-199 (254)
301 4eun_A Thermoresistant glucoki 93.6 0.031 1.1E-06 54.5 2.8 25 205-229 28-52 (200)
302 4gp7_A Metallophosphoesterase; 93.5 0.034 1.2E-06 52.6 2.9 24 205-228 8-31 (171)
303 1tev_A UMP-CMP kinase; ploop, 93.5 0.038 1.3E-06 53.5 3.3 24 206-229 3-26 (196)
304 3umf_A Adenylate kinase; rossm 93.5 0.038 1.3E-06 54.3 3.2 26 204-229 27-52 (217)
305 3dm5_A SRP54, signal recogniti 93.5 0.47 1.6E-05 51.7 12.1 25 205-229 99-123 (443)
306 1q57_A DNA primase/helicase; d 93.4 0.2 6.9E-06 56.6 9.7 54 205-261 241-294 (503)
307 2bdt_A BH3686; alpha-beta prot 93.4 0.041 1.4E-06 53.1 3.4 22 207-228 3-24 (189)
308 1kht_A Adenylate kinase; phosp 93.4 0.036 1.2E-06 53.5 3.0 23 207-229 4-26 (192)
309 1uf9_A TT1252 protein; P-loop, 93.4 0.043 1.5E-06 53.5 3.6 25 205-229 7-31 (203)
310 2qt1_A Nicotinamide riboside k 93.4 0.046 1.6E-06 53.6 3.7 25 205-229 20-44 (207)
311 3fwy_A Light-independent proto 93.4 0.041 1.4E-06 57.7 3.5 39 205-245 47-85 (314)
312 3t61_A Gluconokinase; PSI-biol 93.4 0.031 1.1E-06 54.6 2.4 24 206-229 18-41 (202)
313 3iij_A Coilin-interacting nucl 93.4 0.029 1E-06 53.6 2.2 24 206-229 11-34 (180)
314 3tau_A Guanylate kinase, GMP k 93.4 0.036 1.2E-06 54.4 2.9 25 205-229 7-31 (208)
315 3asz_A Uridine kinase; cytidin 93.3 0.045 1.5E-06 53.9 3.6 25 205-229 5-29 (211)
316 2ze6_A Isopentenyl transferase 93.3 0.04 1.4E-06 56.0 3.3 23 207-229 2-24 (253)
317 1y63_A LMAJ004144AAA protein; 93.3 0.038 1.3E-06 53.1 2.9 24 206-229 10-33 (184)
318 1ukz_A Uridylate kinase; trans 93.3 0.047 1.6E-06 53.4 3.6 25 205-229 14-38 (203)
319 2qor_A Guanylate kinase; phosp 93.3 0.032 1.1E-06 54.7 2.3 25 205-229 11-35 (204)
320 2ga8_A Hypothetical 39.9 kDa p 93.2 0.08 2.7E-06 55.7 5.4 45 183-229 3-47 (359)
321 3cf2_A TER ATPase, transitiona 93.2 0.3 1E-05 57.7 10.7 52 178-229 476-534 (806)
322 2yvu_A Probable adenylyl-sulfa 93.2 0.052 1.8E-06 52.1 3.7 25 205-229 12-36 (186)
323 3cm0_A Adenylate kinase; ATP-b 93.2 0.049 1.7E-06 52.3 3.5 24 206-229 4-27 (186)
324 3tlx_A Adenylate kinase 2; str 93.2 0.073 2.5E-06 53.7 5.0 25 205-229 28-52 (243)
325 1via_A Shikimate kinase; struc 93.2 0.035 1.2E-06 52.8 2.4 22 208-229 6-27 (175)
326 3tr0_A Guanylate kinase, GMP k 93.2 0.043 1.5E-06 53.6 3.1 24 206-229 7-30 (205)
327 1ye8_A Protein THEP1, hypothet 93.1 0.046 1.6E-06 52.0 3.1 22 208-229 2-23 (178)
328 1iy2_A ATP-dependent metallopr 93.1 0.063 2.1E-06 55.5 4.5 52 178-229 39-96 (278)
329 2c95_A Adenylate kinase 1; tra 93.1 0.042 1.4E-06 53.3 2.9 24 206-229 9-32 (196)
330 2jaq_A Deoxyguanosine kinase; 93.1 0.043 1.5E-06 53.6 3.0 22 208-229 2-23 (205)
331 2if2_A Dephospho-COA kinase; a 93.1 0.045 1.5E-06 53.5 3.1 21 208-228 3-23 (204)
332 1qf9_A UMP/CMP kinase, protein 93.0 0.058 2E-06 52.1 3.8 25 205-229 5-29 (194)
333 2j41_A Guanylate kinase; GMP, 93.0 0.043 1.5E-06 53.8 2.9 24 206-229 6-29 (207)
334 1jjv_A Dephospho-COA kinase; P 93.0 0.051 1.7E-06 53.2 3.4 22 207-228 3-24 (206)
335 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.049 1.7E-06 55.6 3.4 24 206-229 4-27 (260)
336 3a00_A Guanylate kinase, GMP k 93.0 0.036 1.2E-06 53.4 2.2 23 207-229 2-24 (186)
337 2hf9_A Probable hydrogenase ni 93.0 0.066 2.3E-06 53.3 4.3 25 205-229 37-61 (226)
338 2grj_A Dephospho-COA kinase; T 92.9 0.06 2E-06 51.9 3.6 26 204-229 10-35 (192)
339 3upu_A ATP-dependent DNA helic 92.9 0.12 4.1E-06 57.7 6.7 38 185-229 31-68 (459)
340 2plr_A DTMP kinase, probable t 92.9 0.053 1.8E-06 53.3 3.4 24 206-229 4-27 (213)
341 2cdn_A Adenylate kinase; phosp 92.9 0.05 1.7E-06 53.0 3.1 25 205-229 19-43 (201)
342 2iyv_A Shikimate kinase, SK; t 92.9 0.038 1.3E-06 53.0 2.2 22 208-229 4-25 (184)
343 2q6t_A DNAB replication FORK h 92.9 0.32 1.1E-05 53.9 10.0 54 205-261 199-252 (444)
344 2yhs_A FTSY, cell division pro 92.8 0.27 9.4E-06 54.1 9.0 42 205-249 292-333 (503)
345 1xjc_A MOBB protein homolog; s 92.8 0.049 1.7E-06 51.0 2.7 25 205-229 3-27 (169)
346 1cke_A CK, MSSA, protein (cyti 92.8 0.05 1.7E-06 54.2 3.0 23 207-229 6-28 (227)
347 3e70_C DPA, signal recognition 92.7 0.35 1.2E-05 50.9 9.5 25 205-229 128-152 (328)
348 2bwj_A Adenylate kinase 5; pho 92.7 0.054 1.9E-06 52.6 3.1 24 206-229 12-35 (199)
349 1e6c_A Shikimate kinase; phosp 92.7 0.04 1.4E-06 52.2 2.1 22 208-229 4-25 (173)
350 2ffh_A Protein (FFH); SRP54, s 92.7 0.34 1.2E-05 52.7 9.6 25 205-229 97-121 (425)
351 2pt5_A Shikimate kinase, SK; a 92.7 0.055 1.9E-06 50.9 3.0 22 208-229 2-23 (168)
352 3ney_A 55 kDa erythrocyte memb 92.6 0.053 1.8E-06 52.2 2.8 25 205-229 18-42 (197)
353 1ex7_A Guanylate kinase; subst 92.6 0.04 1.4E-06 52.6 1.9 23 207-229 2-24 (186)
354 1lvg_A Guanylate kinase, GMP k 92.6 0.044 1.5E-06 53.3 2.2 24 206-229 4-27 (198)
355 2vli_A Antibiotic resistance p 92.6 0.036 1.2E-06 53.0 1.6 24 206-229 5-28 (183)
356 2xxa_A Signal recognition part 92.6 0.41 1.4E-05 52.4 10.1 25 205-229 99-123 (433)
357 3bgw_A DNAB-like replicative h 92.5 0.24 8.3E-06 54.7 8.4 52 205-260 196-247 (444)
358 1uj2_A Uridine-cytidine kinase 92.5 0.062 2.1E-06 54.6 3.4 25 205-229 21-45 (252)
359 2wsm_A Hydrogenase expression/ 92.5 0.1 3.5E-06 51.6 4.9 40 184-229 14-53 (221)
360 2r6a_A DNAB helicase, replicat 92.5 0.23 7.8E-06 55.3 8.2 51 205-258 202-252 (454)
361 3aez_A Pantothenate kinase; tr 92.5 0.067 2.3E-06 56.0 3.6 25 205-229 89-113 (312)
362 2bbw_A Adenylate kinase 4, AK4 92.5 0.06 2.1E-06 54.4 3.1 24 206-229 27-50 (246)
363 2pez_A Bifunctional 3'-phospho 92.5 0.069 2.3E-06 50.9 3.4 25 205-229 4-28 (179)
364 1htw_A HI0065; nucleotide-bind 92.4 0.081 2.8E-06 49.1 3.6 25 205-229 32-56 (158)
365 3kl4_A SRP54, signal recogniti 92.4 0.26 8.9E-06 53.7 8.2 25 205-229 96-120 (433)
366 2pbr_A DTMP kinase, thymidylat 92.4 0.062 2.1E-06 51.9 3.0 22 208-229 2-23 (195)
367 2zts_A Putative uncharacterize 92.3 0.2 6.9E-06 50.5 7.0 50 205-257 29-78 (251)
368 3cmu_A Protein RECA, recombina 92.3 0.19 6.6E-06 64.8 8.0 83 205-294 1426-1514(2050)
369 1aky_A Adenylate kinase; ATP:A 92.3 0.059 2E-06 53.4 2.8 24 206-229 4-27 (220)
370 2wwf_A Thymidilate kinase, put 92.2 0.062 2.1E-06 52.8 2.8 24 206-229 10-33 (212)
371 1nn5_A Similar to deoxythymidy 92.2 0.066 2.2E-06 52.8 3.0 24 206-229 9-32 (215)
372 1fx0_B ATP synthase beta chain 92.2 0.33 1.1E-05 53.2 8.6 89 205-294 164-275 (498)
373 3jvv_A Twitching mobility prot 92.2 0.043 1.5E-06 58.6 1.6 111 206-329 123-235 (356)
374 1j8m_F SRP54, signal recogniti 92.2 0.37 1.3E-05 49.9 8.8 88 206-295 98-190 (297)
375 3zvl_A Bifunctional polynucleo 92.1 0.32 1.1E-05 53.3 8.7 26 204-229 256-281 (416)
376 2jeo_A Uridine-cytidine kinase 92.1 0.08 2.7E-06 53.5 3.5 25 205-229 24-48 (245)
377 1znw_A Guanylate kinase, GMP k 92.1 0.073 2.5E-06 52.2 3.1 25 205-229 19-43 (207)
378 1ls1_A Signal recognition part 92.1 0.34 1.2E-05 50.2 8.4 25 205-229 97-121 (295)
379 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.19 6.6E-06 53.0 6.6 105 207-326 172-276 (330)
380 3b5x_A Lipid A export ATP-bind 92.0 0.44 1.5E-05 54.9 10.1 25 205-229 368-392 (582)
381 1m7g_A Adenylylsulfate kinase; 92.0 0.085 2.9E-06 51.8 3.5 25 205-229 24-48 (211)
382 1zd8_A GTP:AMP phosphotransfer 92.0 0.075 2.6E-06 53.0 3.1 24 206-229 7-30 (227)
383 2f6r_A COA synthase, bifunctio 92.0 0.09 3.1E-06 54.3 3.8 24 205-228 74-97 (281)
384 1tue_A Replication protein E1; 92.0 0.095 3.2E-06 50.3 3.5 37 188-229 45-81 (212)
385 1rj9_A FTSY, signal recognitio 91.9 0.074 2.5E-06 55.4 3.1 25 205-229 101-125 (304)
386 3fb4_A Adenylate kinase; psych 91.9 0.076 2.6E-06 52.4 3.0 22 208-229 2-23 (216)
387 4e22_A Cytidylate kinase; P-lo 91.9 0.077 2.6E-06 53.8 3.1 24 206-229 27-50 (252)
388 1z6g_A Guanylate kinase; struc 91.9 0.062 2.1E-06 53.2 2.3 24 206-229 23-46 (218)
389 3p32_A Probable GTPase RV1496/ 91.9 0.16 5.4E-06 54.5 5.7 38 188-229 65-102 (355)
390 3l0o_A Transcription terminati 91.8 0.49 1.7E-05 50.0 9.0 37 188-229 162-198 (427)
391 3be4_A Adenylate kinase; malar 91.8 0.078 2.7E-06 52.4 2.9 23 207-229 6-28 (217)
392 1sq5_A Pantothenate kinase; P- 91.8 0.18 6E-06 52.9 5.8 25 205-229 79-103 (308)
393 2z0h_A DTMP kinase, thymidylat 91.8 0.082 2.8E-06 51.2 3.0 22 208-229 2-23 (197)
394 3dl0_A Adenylate kinase; phosp 91.8 0.081 2.8E-06 52.2 3.0 22 208-229 2-23 (216)
395 1s96_A Guanylate kinase, GMP k 91.7 0.079 2.7E-06 52.3 2.9 25 205-229 15-39 (219)
396 2f1r_A Molybdopterin-guanine d 91.7 0.059 2E-06 50.8 1.8 23 207-229 3-25 (171)
397 2v54_A DTMP kinase, thymidylat 91.7 0.078 2.7E-06 51.7 2.8 24 206-229 4-27 (204)
398 1gtv_A TMK, thymidylate kinase 91.7 0.057 1.9E-06 53.2 1.8 22 208-229 2-23 (214)
399 2ck3_D ATP synthase subunit be 91.6 0.57 1.9E-05 51.2 9.6 99 190-294 142-262 (482)
400 1zak_A Adenylate kinase; ATP:A 91.6 0.07 2.4E-06 53.0 2.4 24 206-229 5-28 (222)
401 1vht_A Dephospho-COA kinase; s 91.6 0.096 3.3E-06 51.7 3.4 23 206-228 4-26 (218)
402 2j37_W Signal recognition part 91.5 0.6 2E-05 52.1 10.0 26 204-229 99-124 (504)
403 3tif_A Uncharacterized ABC tra 91.5 0.13 4.3E-06 51.5 4.2 34 206-242 31-64 (235)
404 1g41_A Heat shock protein HSLU 91.5 0.14 4.8E-06 55.9 4.8 51 179-229 15-73 (444)
405 2i3b_A HCR-ntpase, human cance 91.4 0.084 2.9E-06 50.7 2.6 22 208-229 3-24 (189)
406 2onk_A Molybdate/tungstate ABC 91.4 0.13 4.4E-06 51.5 4.0 23 207-229 25-47 (240)
407 2ged_A SR-beta, signal recogni 91.3 0.15 5E-06 49.1 4.4 25 205-229 47-71 (193)
408 2pcj_A ABC transporter, lipopr 91.3 0.14 4.8E-06 50.7 4.3 23 207-229 31-53 (224)
409 3sr0_A Adenylate kinase; phosp 91.3 0.093 3.2E-06 51.2 2.8 22 208-229 2-23 (206)
410 3b9q_A Chloroplast SRP recepto 91.3 0.11 3.8E-06 54.0 3.6 25 205-229 99-123 (302)
411 2j9r_A Thymidine kinase; TK1, 91.2 0.23 7.9E-06 48.1 5.4 110 205-325 27-138 (214)
412 3a8t_A Adenylate isopentenyltr 91.2 0.12 4.2E-06 54.0 3.7 25 205-229 39-63 (339)
413 3cmu_A Protein RECA, recombina 91.1 0.39 1.3E-05 62.1 8.8 84 205-295 382-471 (2050)
414 3nwj_A ATSK2; P loop, shikimat 91.1 0.086 3E-06 53.1 2.4 23 207-229 49-71 (250)
415 3gfo_A Cobalt import ATP-bindi 91.0 0.15 5.1E-06 52.2 4.2 22 207-228 35-56 (275)
416 3ake_A Cytidylate kinase; CMP 91.0 0.11 3.7E-06 50.8 3.0 22 208-229 4-25 (208)
417 1e4v_A Adenylate kinase; trans 91.0 0.11 3.8E-06 51.1 3.1 22 208-229 2-23 (214)
418 4akg_A Glutathione S-transfera 91.0 2 6.9E-05 57.7 15.6 138 207-355 1268-1431(2695)
419 1b0u_A Histidine permease; ABC 90.9 0.15 5.3E-06 51.8 4.2 24 206-229 32-55 (262)
420 3d3q_A TRNA delta(2)-isopenten 90.9 0.12 4E-06 54.3 3.3 23 207-229 8-30 (340)
421 2ehv_A Hypothetical protein PH 90.9 0.11 3.9E-06 52.5 3.1 24 205-228 29-52 (251)
422 1cr0_A DNA primase/helicase; R 90.9 0.28 9.7E-06 51.0 6.3 50 206-259 35-85 (296)
423 2xb4_A Adenylate kinase; ATP-b 90.8 0.11 3.9E-06 51.5 3.0 22 208-229 2-23 (223)
424 3e1s_A Exodeoxyribonuclease V, 90.8 0.32 1.1E-05 55.6 7.1 106 207-325 205-316 (574)
425 1np6_A Molybdopterin-guanine d 90.8 0.11 3.9E-06 48.9 2.8 25 205-229 5-29 (174)
426 3r20_A Cytidylate kinase; stru 90.8 0.12 4E-06 51.3 3.0 24 206-229 9-32 (233)
427 2wji_A Ferrous iron transport 90.8 0.15 5.1E-06 47.7 3.7 23 207-229 4-26 (165)
428 4g1u_C Hemin import ATP-bindin 90.8 0.18 6E-06 51.4 4.4 24 206-229 37-60 (266)
429 3k1j_A LON protease, ATP-depen 90.6 0.19 6.4E-06 58.3 5.0 43 179-229 41-83 (604)
430 3exa_A TRNA delta(2)-isopenten 90.6 0.14 4.8E-06 52.8 3.4 24 206-229 3-26 (322)
431 2olj_A Amino acid ABC transpor 90.6 0.18 6E-06 51.3 4.2 24 206-229 50-73 (263)
432 3lnc_A Guanylate kinase, GMP k 90.6 0.089 3E-06 52.6 2.0 24 206-229 27-51 (231)
433 3crm_A TRNA delta(2)-isopenten 90.5 0.13 4.5E-06 53.5 3.3 24 206-229 5-28 (323)
434 1oix_A RAS-related protein RAB 90.5 0.16 5.6E-06 48.8 3.8 25 205-229 28-52 (191)
435 1sgw_A Putative ABC transporte 90.4 0.16 5.5E-06 49.7 3.6 23 207-229 36-58 (214)
436 1ji0_A ABC transporter; ATP bi 90.4 0.19 6.5E-06 50.4 4.2 23 207-229 33-55 (240)
437 2qmh_A HPR kinase/phosphorylas 90.3 0.15 5.3E-06 48.5 3.2 24 206-229 34-57 (205)
438 2r9v_A ATP synthase subunit al 90.3 0.38 1.3E-05 52.8 6.8 86 205-294 174-276 (515)
439 2og2_A Putative signal recogni 90.3 0.15 5.2E-06 54.2 3.6 25 205-229 156-180 (359)
440 1g6h_A High-affinity branched- 90.3 0.19 6.5E-06 51.0 4.2 24 206-229 33-56 (257)
441 1vpl_A ABC transporter, ATP-bi 90.3 0.19 6.6E-06 50.8 4.2 24 206-229 41-64 (256)
442 1ak2_A Adenylate kinase isoenz 90.3 0.13 4.6E-06 51.3 3.0 24 206-229 16-39 (233)
443 2zej_A Dardarin, leucine-rich 90.2 0.13 4.3E-06 49.2 2.7 22 208-229 4-25 (184)
444 1ltq_A Polynucleotide kinase; 90.2 0.14 4.8E-06 53.5 3.3 22 207-228 3-24 (301)
445 2dr3_A UPF0273 protein PH0284; 90.2 0.2 6.8E-06 50.4 4.3 39 206-246 23-61 (247)
446 3cmw_A Protein RECA, recombina 90.2 0.44 1.5E-05 60.8 8.1 80 208-294 385-470 (1706)
447 2ixe_A Antigen peptide transpo 90.2 0.2 6.8E-06 51.3 4.2 24 206-229 45-68 (271)
448 3b85_A Phosphate starvation-in 90.2 0.11 3.9E-06 50.6 2.3 23 207-229 23-45 (208)
449 1yrb_A ATP(GTP)binding protein 90.1 0.16 5.5E-06 51.7 3.5 25 205-229 13-37 (262)
450 3foz_A TRNA delta(2)-isopenten 90.1 0.17 5.9E-06 52.0 3.6 25 205-229 9-33 (316)
451 2dyk_A GTP-binding protein; GT 89.9 0.18 6E-06 46.7 3.3 23 207-229 2-24 (161)
452 3vr4_D V-type sodium ATPase su 89.8 0.39 1.3E-05 52.1 6.2 86 207-294 152-257 (465)
453 1zu4_A FTSY; GTPase, signal re 89.8 0.18 6E-06 53.0 3.6 25 205-229 104-128 (320)
454 3rfe_A Platelet glycoprotein I 89.8 0.19 6.4E-06 44.8 3.3 52 613-667 12-66 (130)
455 3b60_A Lipid A export ATP-bind 89.8 0.48 1.6E-05 54.6 7.6 24 206-229 369-392 (582)
456 2yz2_A Putative ABC transporte 89.8 0.22 7.5E-06 50.8 4.2 23 206-228 33-55 (266)
457 2qe7_A ATP synthase subunit al 89.7 0.34 1.2E-05 53.2 5.8 86 205-294 161-263 (502)
458 1q3t_A Cytidylate kinase; nucl 89.6 0.16 5.4E-06 50.9 2.9 26 204-229 14-39 (236)
459 2d2e_A SUFC protein; ABC-ATPas 89.5 0.17 5.9E-06 51.0 3.1 22 207-228 30-51 (250)
460 2wjg_A FEOB, ferrous iron tran 89.5 0.21 7.3E-06 47.7 3.7 25 205-229 6-30 (188)
461 2ihy_A ABC transporter, ATP-bi 89.5 0.24 8.1E-06 50.9 4.2 24 206-229 47-70 (279)
462 3gqb_B V-type ATP synthase bet 89.5 0.25 8.5E-06 53.6 4.4 89 206-294 147-260 (464)
463 2zu0_C Probable ATP-dependent 89.3 0.18 6.2E-06 51.4 3.1 24 206-229 46-69 (267)
464 2eyu_A Twitching motility prot 89.2 0.21 7.2E-06 50.7 3.5 110 205-328 24-136 (261)
465 3f9v_A Minichromosome maintena 89.2 0.15 5E-06 58.8 2.5 51 179-229 295-350 (595)
466 2f9l_A RAB11B, member RAS onco 89.2 0.21 7.2E-06 48.4 3.4 24 206-229 5-28 (199)
467 2ce2_X GTPase HRAS; signaling 89.2 0.19 6.5E-06 46.6 3.0 22 208-229 5-26 (166)
468 1tq4_A IIGP1, interferon-induc 89.2 0.26 8.7E-06 53.5 4.3 24 205-228 68-91 (413)
469 4eaq_A DTMP kinase, thymidylat 89.1 0.22 7.4E-06 49.6 3.5 25 205-229 25-49 (229)
470 1z2a_A RAS-related protein RAB 89.1 0.24 8.2E-06 46.1 3.6 25 205-229 4-28 (168)
471 2vp4_A Deoxynucleoside kinase; 89.0 0.2 6.7E-06 50.0 3.1 26 204-229 18-43 (230)
472 2qi9_C Vitamin B12 import ATP- 89.0 0.19 6.4E-06 50.6 2.9 23 207-229 27-49 (249)
473 2ghi_A Transport protein; mult 89.0 0.19 6.4E-06 51.1 2.9 24 206-229 46-69 (260)
474 3qf4_B Uncharacterized ABC tra 89.0 0.44 1.5E-05 55.0 6.4 25 205-229 380-404 (598)
475 2v9p_A Replication protein E1; 89.0 0.2 6.8E-06 51.9 3.2 25 205-229 125-149 (305)
476 3end_A Light-independent proto 89.0 0.21 7.3E-06 52.3 3.5 42 204-247 39-80 (307)
477 1a7j_A Phosphoribulokinase; tr 88.9 0.1 3.4E-06 54.1 0.9 25 205-229 4-28 (290)
478 2gj8_A MNME, tRNA modification 88.9 0.21 7.3E-06 47.0 3.1 23 207-229 5-27 (172)
479 2ocp_A DGK, deoxyguanosine kin 88.9 0.23 7.8E-06 49.9 3.5 24 206-229 2-25 (241)
480 1nlf_A Regulatory protein REPA 88.9 0.21 7.1E-06 51.5 3.2 24 206-229 30-53 (279)
481 3rfe_A Platelet glycoprotein I 88.8 0.39 1.3E-05 42.7 4.6 43 600-645 24-67 (130)
482 2nq2_C Hypothetical ABC transp 88.8 0.2 6.8E-06 50.7 2.9 23 207-229 32-54 (253)
483 1svm_A Large T antigen; AAA+ f 88.7 0.34 1.1E-05 52.0 4.8 25 205-229 168-192 (377)
484 3mfy_A V-type ATP synthase alp 88.7 0.71 2.4E-05 51.1 7.3 58 190-256 216-274 (588)
485 1u0j_A DNA replication protein 88.6 0.34 1.2E-05 48.7 4.5 38 188-229 90-127 (267)
486 2yl4_A ATP-binding cassette SU 88.6 0.47 1.6E-05 54.8 6.4 24 206-229 370-393 (595)
487 3qf4_A ABC transporter, ATP-bi 88.6 0.99 3.4E-05 51.9 9.0 23 206-228 369-391 (587)
488 3q72_A GTP-binding protein RAD 88.5 0.21 7.1E-06 46.5 2.7 22 208-229 4-25 (166)
489 2nzj_A GTP-binding protein REM 88.5 0.3 1E-05 45.8 3.9 24 206-229 4-27 (175)
490 1xx6_A Thymidine kinase; NESG, 88.5 0.12 4.2E-06 49.5 1.1 110 205-325 7-118 (191)
491 1g8f_A Sulfate adenylyltransfe 88.5 0.35 1.2E-05 53.9 4.9 47 179-229 372-418 (511)
492 4dkx_A RAS-related protein RAB 88.5 0.22 7.5E-06 49.0 3.0 22 208-229 15-36 (216)
493 2lkc_A Translation initiation 88.4 0.25 8.4E-06 46.6 3.2 25 205-229 7-31 (178)
494 2c61_A A-type ATP synthase non 88.4 0.31 1.1E-05 53.2 4.3 89 206-294 152-258 (469)
495 1fzq_A ADP-ribosylation factor 88.4 0.28 9.5E-06 46.6 3.6 25 205-229 15-39 (181)
496 3con_A GTPase NRAS; structural 88.4 0.22 7.6E-06 47.7 2.9 24 206-229 21-44 (190)
497 1m7b_A RND3/RHOE small GTP-bin 88.3 0.29 1E-05 46.5 3.7 25 205-229 6-30 (184)
498 3sop_A Neuronal-specific septi 88.3 0.24 8.4E-06 50.5 3.2 22 208-229 4-25 (270)
499 3q85_A GTP-binding protein REM 88.3 0.24 8E-06 46.3 2.9 22 207-228 3-24 (169)
500 1u8z_A RAS-related protein RAL 88.2 0.23 7.9E-06 46.1 2.9 24 206-229 4-27 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.6e-46 Score=432.82 Aligned_cols=316 Identities=18% Similarity=0.216 Sum_probs=254.3
Q ss_pred ccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHc--ccccccCCCeEEEEEeCCCC--CHHHHHHHH
Q 035647 182 RGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYN--DSCVINNFDKRMWVCVSDNF--DEFRIAKAI 257 (938)
Q Consensus 182 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 257 (938)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23689999999999999999999998 56789999999999999885 788999999
Q ss_pred HHHhcCCCC-------CcccHHHHHHHHHHhhcCc-eeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 258 IEALEGSAP-------NLGELQSLLQHIYASIVGK-RFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 258 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
+++++.... ...+.+.+...+++.++++ ||||||||||+.+ ++ .++. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~-----~~~~-~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI-----RWAQ-ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH-----HHHH-HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh-----cccc-cCCCEEEEEcCCHHHHH
Confidence 999986421 1234566788999999996 9999999998742 11 1221 26999999999999998
Q ss_pred hcc-cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHHHHhhh
Q 035647 330 MME-STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWESVLNSE 408 (938)
Q Consensus 330 ~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~~l~~~ 408 (938)
.++ ....|+|++|+.+|||+||.+++|... ..+...+++++|+++|+|+||||+++|+.++.+ . -+|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 775 346899999999999999999987643 246788899999999999999999999999765 2 2333333332
Q ss_pred cccchhhhchhhhhhhhcccCCcHHHHHHHh-----------hhcCCCCCcccchhHHHHHHHHc--CCccccC-CchHH
Q 035647 409 MWWFEELEKYLFAPLLLSYNDLPSMIKQCFL-----------YCTVFPKDYNIEKDELIKLWMAQ--GYIEQKG-NKEME 474 (938)
Q Consensus 409 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~a~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~e 474 (938)
.+.. ....+..++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+ +.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 2221 2456999999999999999999999 999999999999 8999999 9998776 56778
Q ss_pred HHHHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHHHhhccccE
Q 035647 475 IIGQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFARYLTKNEYL 523 (938)
Q Consensus 475 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~~~~~~~~~ 523 (938)
++++ ||++|+++||++....+ .+.+|+|||++|+||++++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999987542 346799999999999999887764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.3e-37 Score=362.31 Aligned_cols=285 Identities=19% Similarity=0.167 Sum_probs=226.2
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCe-EEEEEeCCCCCHHHHHHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDK-RMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 258 (938)
..+||++++++|.++|... +..++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3599999999999999742 24789999999999999999999998778889986 99999999999888888887
Q ss_pred HHhcCCC------CC-----cccHHHHHHHHHHhh---cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC
Q 035647 259 EALEGSA------PN-----LGELQSLLQHIYASI---VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN 324 (938)
Q Consensus 259 ~~l~~~~------~~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 324 (938)
+.++... .. ..+.+.....+++.+ .++|+||||||||+. +.|+. ++ +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccC
Confidence 7543210 00 123445566677765 689999999999862 44443 32 68999999999
Q ss_pred hHHHHhcccCCeEecC------CCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCC-C
Q 035647 325 EKVVRMMESTDVISIK------ELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKR-T 397 (938)
Q Consensus 325 ~~~~~~~~~~~~~~l~------~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~-~ 397 (938)
+.++..+.....+.++ +|+.+|||+||.+.. +.. ..++..+| |+|+||||+++|++|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988655444456666 999999999999984 222 11223333 9999999999999999874 6
Q ss_pred HHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHH-HHHHhhhcCCCCCcccchhHHHHHHHHcCCccccCCchHHHH
Q 035647 398 REEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMI-KQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEII 476 (938)
Q Consensus 398 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~~ 476 (938)
.++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|.++| ++.
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eed 403 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSD 403 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHH
Confidence 7788753 13468999999999999998 99999999999999999999999998887 134
Q ss_pred HHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHH
Q 035647 477 GQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFA 514 (938)
Q Consensus 477 ~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~ 514 (938)
+..+|++|+++||++... ...+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 788999999999999731 225689999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.9e-36 Score=385.83 Aligned_cols=312 Identities=21% Similarity=0.264 Sum_probs=246.6
Q ss_pred ccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc-ccCC-CeEEEEEeCCCCC--HH
Q 035647 176 INVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV-INNF-DKRMWVCVSDNFD--EF 251 (938)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~ 251 (938)
.+++.|+||++++++|.++|.... ...++|+|+||||+||||||++++++.+. ..+| +.++||++++... ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997542 36899999999999999999999998543 4445 6788999988543 33
Q ss_pred HHHHHHHHHhcCCC----CCcccHHHHHHHHHHhhcCc--eeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 252 RIAKAIIEALEGSA----PNLGELQSLLQHIYASIVGK--RFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 252 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
..+..++..+.... ....+.+.+...++..+.++ |+||||||||+. .+|.. ..+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 44666777776432 22346677888899999877 999999999853 22332 35789999999999
Q ss_pred HHHHh-cccCCeEecCC-CChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHH
Q 035647 326 KVVRM-MESTDVISIKE-LSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWES 403 (938)
Q Consensus 326 ~~~~~-~~~~~~~~l~~-L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~ 403 (938)
.++.. ++....+++.+ |+.+||++||...++... +...+.+++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 98854 45567899996 999999999999884332 23446688999999999999999999998764 34666
Q ss_pred HHhhhcccc--------hhhhchhhhhhhhcccCCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccCCchHHH
Q 035647 404 VLNSEMWWF--------EELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEMEI 475 (938)
Q Consensus 404 ~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e~ 475 (938)
.++...... ......+..+|.+||+.||+++|.||+|||+||+++.|+.+.++.+|.++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HH
Confidence 654432111 11124589999999999999999999999999999999999999999554 36
Q ss_pred HHHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHHHhhccc
Q 035647 476 IGQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFARYLTKNE 521 (938)
Q Consensus 476 ~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~~~~~~~ 521 (938)
.++.+|++|+++||++... ++...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 6789999999999998654 344467999999999999987766
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=330.39 Aligned_cols=307 Identities=21% Similarity=0.250 Sum_probs=233.1
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc-ccCC-CeEEEEEeCCCCCHHHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV-INNF-DKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 254 (938)
.++.||||+.++++|.++|.... ...++|+|+|+||+||||||++++++.+. ..+| +.++|++++.. +...+.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 34679999999999999997532 35789999999999999999999998655 7889 58999999875 333344
Q ss_pred HHH---HHHhcCC----CCCcccHHHHHHHHHHhhcC--ceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 255 KAI---IEALEGS----APNLGELQSLLQHIYASIVG--KRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 255 ~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
..+ +..++.. .....+.+.....+...+.+ +++||||||+|+. ..+ ....+|++||||||+.
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l----~~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL----KAFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH----HTTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH----HHhcCCCeEEEECCCc
Confidence 333 4444421 12334566777778887775 7899999999752 122 1225689999999999
Q ss_pred HHHHhcccCCeEec---CCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHH
Q 035647 326 KVVRMMESTDVISI---KELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWE 402 (938)
Q Consensus 326 ~~~~~~~~~~~~~l---~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~ 402 (938)
.++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||.++|++++... ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8876543 234444 5899999999999988542 122345678899999999999999999998764 3677
Q ss_pred HHHhhhcccc--------hhhhchhhhhhhhcccCCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccCCchHH
Q 035647 403 SVLNSEMWWF--------EELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNKEME 474 (938)
Q Consensus 403 ~~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~e 474 (938)
..++...... ......+..++.+||+.||++.|.||+++|+||+++.|+.+.+...|.++ .
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~ 408 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------T 408 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------H
Confidence 6665432211 11124688999999999999999999999999999999999999999543 2
Q ss_pred HHHHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHHHhhc
Q 035647 475 IIGQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFARYLTK 519 (938)
Q Consensus 475 ~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~~~~~ 519 (938)
+.+..++++|+++||++... ++...+|+||+++++++.....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhhh
Confidence 34678999999999998543 3344679999999999998743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=4.4e-27 Score=286.12 Aligned_cols=358 Identities=18% Similarity=0.208 Sum_probs=221.3
Q ss_pred CceEEEEEEcCCCC-CCcccccCC-CCceEEEEecCCCcchhhhhhhhhccCcccccCCC------Ccchh-ccCCCccc
Q 035647 542 EELRHSILFLGYNA-SLPVCIYNA-KKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTE------ELPET-CCELCNLQ 612 (938)
Q Consensus 542 ~~lr~l~l~~~~~~-~~~~~~~~l-~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~------~lp~~-i~~L~~L~ 612 (938)
.+++++++.+|.+. .+|..+... ++|+.|++++| .....+|..|+++++|++|++. .+|.. +.++++|+
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN--HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS--EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC--cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 44555555555443 344444332 55555555554 3333445555555555555521 34433 55555555
Q ss_pred EEeecCCCCCcccchhhhccc-CCCeEEeCCcc--------------------------cc-ccCccCCCCCCCCcCCce
Q 035647 613 TIEIEECSNLRRLPQRIGKLV-NLRHLIFVDVY--------------------------LD-YMPKGIERLTCLRTLSEF 664 (938)
Q Consensus 613 ~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~--------------------------l~-~lp~~i~~L~~L~~L~~~ 664 (938)
+|++++|.....+|..+.+++ +|++|++++|. +. .+|..++++++|++|++.
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 555555552224555555544 45555555544 32 344444444555554444
Q ss_pred EecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccH
Q 035647 665 VVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNH 744 (938)
Q Consensus 665 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 744 (938)
.+...+..+. .+..++.|. .+.+... .+....+..+..+++|+.|++++|.+.+
T Consensus 427 ~N~l~~~~p~---~l~~l~~L~----~L~L~~n----~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------- 480 (768)
T 3rgz_A 427 FNYLSGTIPS---SLGSLSKLR----DLKLWLN----MLEGEIPQELMYVKTLETLILDFNDLTG--------------- 480 (768)
T ss_dssp SSEEESCCCG---GGGGCTTCC----EEECCSS----CCCSCCCGGGGGCTTCCEEECCSSCCCS---------------
T ss_pred CCcccCcccH---HHhcCCCCC----EEECCCC----cccCcCCHHHcCCCCceEEEecCCcccC---------------
Confidence 4333221111 111122221 1112111 1111222334455566666666655542
Q ss_pred HHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccc
Q 035647 745 EAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFW 823 (938)
Q Consensus 745 ~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~ 823 (938)
.++..+..+++|+.|+|++|.+.+.+|.++..+++|+.|+|++|...+.+| .++.+++|+.|++++|.-...+|..+.
T Consensus 481 -~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 481 -EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred -cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 345677888999999999999998799999999999999999998776665 688899999999998874445665443
Q ss_pred cCC-------------------------------------------------------CCCCCCCCcccccCCccceeec
Q 035647 824 GIE-------------------------------------------------------NHHSSSSSSSIVAFPKLKKLTL 848 (938)
Q Consensus 824 ~~~-------------------------------------------------------~~~~~~~~~~~~~l~~L~~L~l 848 (938)
... +...+..+..+..+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 210 1112233455667889999999
Q ss_pred cCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceee
Q 035647 849 RGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQI 928 (938)
Q Consensus 849 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i 928 (938)
++|.....+ |..++.+++|+.|++++|.....+|..+.++++|+.|++++| .+.+..+..+..++.+..+++
T Consensus 640 s~N~l~g~i---p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-----~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 640 SYNMLSGYI---PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-----KLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CSSCCBSCC---CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-----CCEECCCGGGGGCCCCSEEEC
T ss_pred cCCcccccC---CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-----cccCcCChHHhCCCCCCEEEC
Confidence 998544444 445778999999999999766689999999999999999999 556667777888888999999
Q ss_pred ccccccCC
Q 035647 929 NGHNVQGG 936 (938)
Q Consensus 929 ~~~~~~~~ 936 (938)
++|+++|.
T Consensus 712 s~N~l~g~ 719 (768)
T 3rgz_A 712 SNNNLSGP 719 (768)
T ss_dssp CSSEEEEE
T ss_pred cCCccccc
Confidence 99998873
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.3e-25 Score=270.95 Aligned_cols=373 Identities=14% Similarity=0.133 Sum_probs=211.4
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCC----------------------
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTE---------------------- 599 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~---------------------- 599 (938)
.+++++++.+|.+...++.+.++++|++|++++| .....+|..++++++|++|++.
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~ 277 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN--KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS--CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCC--cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECc
Confidence 5666777766666554444666677777777665 3344556666666666666511
Q ss_pred ------CcchhccCC-CcccEEeecCCCCCcccchhhhcccCCCeEEeCCcccc-ccCcc-CCCCCCCCcCCceEecCCC
Q 035647 600 ------ELPETCCEL-CNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLD-YMPKG-IERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 600 ------~lp~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~-i~~L~~L~~L~~~~~~~~~ 670 (938)
.+|..+..+ ++|++|++++|.....+|..++++++|++|++++|.+. .+|.. ++++++|++|++..+...+
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 344444443 66666666666633356666666666666666666654 56654 6666666666665554432
Q ss_pred CCCCCccCcc-ccccccccCCeEEE---cC-----CCCCC-------ChhhhhhccCccccccCceEEEecCCCCCCcc-
Q 035647 671 KYGNKACNLE-GMRDLNNLRGSLII---RG-----LGNVT-------SIDEAKTTNLDKKKNLVHLELRFNKEKDDGAG- 733 (938)
Q Consensus 671 ~~~~~~~~l~-~L~~L~~L~~~l~i---~~-----~~~~~-------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 733 (938)
..+.....+. .|..|.--...+.- .. +..+. .+....+..+..+++|+.|++++|.+.+..+.
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 2222211111 22221100000000 00 00000 01112233455566666666666655432111
Q ss_pred -------ccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCcc
Q 035647 734 -------EAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLE 805 (938)
Q Consensus 734 -------~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 805 (938)
+.+.+..+.....++..+..+++|+.|++++|.+.+.+|.++..+++|+.|+|++|...+.+| .++.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 111111222222233444445555555555555554455555555555555555555443333 345555555
Q ss_pred ceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccc--------------------------
Q 035647 806 ILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEI-------------------------- 859 (938)
Q Consensus 806 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-------------------------- 859 (938)
+|+|++|. ..+..|..+..+++|+.|++++|+....+|.
T Consensus 518 ~L~L~~N~---------------l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 518 ILKLSNNS---------------FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp EEECCSSC---------------CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred EEECCCCc---------------ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 55555544 2333445567888999999988854433331
Q ss_pred -----------------------------------------cccccccCCcccEEeecCCccccCCCcCCCCCCCccEEE
Q 035647 860 -----------------------------------------EKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLE 898 (938)
Q Consensus 860 -----------------------------------------~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 898 (938)
.+..+..+++|+.|++++|.....+|..+.++++|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 012245578999999999976668999999999999999
Q ss_pred EcCCcchHHhhccCCCCCcccccCcCceeeccccccCC
Q 035647 899 IYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 899 l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~~ 936 (938)
+++| .+.+..+..+..++++..+++++|.++|.
T Consensus 663 Ls~N-----~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 663 LGHN-----DISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CCSS-----CCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred CcCC-----ccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 9999 56667788888999999999999999875
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=4.3e-25 Score=266.07 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=57.7
Q ss_pred cceEEEeecCCCCCCCch---hh--hccCccEEEEeCCCCCCCCCCC-CCCCCccceeeccccCceEeCcccccCCCCCC
Q 035647 757 IESLEMCYYKGKTALPSW---VV--LLNKLKKLYLTHCNNCEIMPSL-GKLPSLEILQIIGMRSVKRVGDEFWGIENHHS 830 (938)
Q Consensus 757 L~~L~L~~~~~~~~lp~~---~~--~l~~L~~L~L~~~~~~~~l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 830 (938)
|+.|+|++|.+.+.+|.. +. .+++|+.|+|++|.....++.+ ..+++|+.|+|++|. +..+|...+...
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~---- 720 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPK---- 720 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCT----
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccc----
Confidence 555666655555433321 11 2335666666665443222222 245666666666654 444444322100
Q ss_pred CCCCcccccCCccceeeccCccccccccccccccc--cCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCC
Q 035647 831 SSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIA--VMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 831 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 902 (938)
......+++|+.|+|++| .+..++ ..+. .+++|+.|+|++|. +..+|..+.++++|+.|++++|
T Consensus 721 ---~~~l~nl~~L~~L~Ls~N-~L~~lp---~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 721 ---DGNYKNTYLLTTIDLRFN-KLTSLS---DDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp ---TSCCTTGGGCCEEECCSS-CCCCCC---GGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCC
T ss_pred ---cccccccCCccEEECCCC-CCccch---HHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCC
Confidence 000112234555555544 223222 1222 44555555554442 3334444444555555555443
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=9.8e-25 Score=259.14 Aligned_cols=312 Identities=16% Similarity=0.133 Sum_probs=201.1
Q ss_pred CcccccCCCCceEEEEecCCCcchhh-----------------hhhhhh--ccCcccccC------CCCcchhccCCCcc
Q 035647 557 LPVCIYNAKKLRSLLIYSSLYDLSAV-----------------LRYFFD--QLTCLRALR------TEELPETCCELCNL 611 (938)
Q Consensus 557 ~~~~~~~l~~Lr~L~l~~~~~~~~~~-----------------l~~~~~--~l~~Lr~L~------i~~lp~~i~~L~~L 611 (938)
+|..+.++++|++|++++| ...+. +|..++ ++++|++|+ .+.+|..++++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNS--PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESC--CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCC--ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 6778889999999999997 33332 899988 999999998 56789999999999
Q ss_pred cEEeecCCCCCc--ccchhhhcc------cCCCeEEeCCccccccCc--cCCCCCCCCcCCceEecCCCCCCCCccCccc
Q 035647 612 QTIEIEECSNLR--RLPQRIGKL------VNLRHLIFVDVYLDYMPK--GIERLTCLRTLSEFVVSGRGKYGNKACNLEG 681 (938)
Q Consensus 612 ~~L~L~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~ 681 (938)
++|++++|..++ .+|..++++ ++|++|++++|.+..+|. .++++++|++|++..+...+..+ .+..
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~ 351 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGS 351 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCC
Confidence 999999997444 599988887 999999999999889998 89999999999988877653333 3333
Q ss_pred cccccccCCeEEEcCCCCCCChhhhhhccCccccc-cCceEEEecCCCCCCcc---------ccccccccccHHHHhhhc
Q 035647 682 MRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKN-LVHLELRFNKEKDDGAG---------EAMNLENEVNHEAISEAL 751 (938)
Q Consensus 682 L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l 751 (938)
++.|. .+.+... .+. ..+..+..+.+ |+.|++++|.+...+.. ..+.+..+......+..+
T Consensus 352 l~~L~----~L~L~~N----~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 352 EIKLA----SLNLAYN----QIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp EEEES----EEECCSS----EEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred CCCCC----EEECCCC----ccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 33333 2222221 011 22344667777 88888888877632211 111222222223333444
Q ss_pred C-------CCCCcceEEEeecCCCCCCCchhh-hccCccEEEEeCCCCCCCCCCCC--------CCCCccceeeccccCc
Q 035647 752 Q-------APPNIESLEMCYYKGKTALPSWVV-LLNKLKKLYLTHCNNCEIMPSLG--------KLPSLEILQIIGMRSV 815 (938)
Q Consensus 752 ~-------~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~l~--------~l~~L~~L~L~~~~~l 815 (938)
. .+++|+.|++++|.+.. +|..+. .+++|+.|+|++|.....++... .+++|+.|+|++|. +
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l 500 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-L 500 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-C
T ss_pred cccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-C
Confidence 4 55678888888888775 776654 47888888888886553333222 22378888887765 5
Q ss_pred eEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeec------CCccccCCCcCCC
Q 035647 816 KRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELG------SCSKLKSLPVDLL 889 (938)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~------~c~~l~~lp~~l~ 889 (938)
+.+|..+.. ..+++|+.|++++|. +..+ |..+..+++|+.|+++ +|.....+|..+.
T Consensus 501 ~~lp~~~~~-------------~~l~~L~~L~Ls~N~-l~~i---p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 501 TKLSDDFRA-------------TTLPYLVGIDLSYNS-FSKF---PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp CBCCGGGST-------------TTCTTCCEEECCSSC-CSSC---CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred CccChhhhh-------------ccCCCcCEEECCCCC-CCCc---ChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 455543320 145566666666552 2323 2234455666666663 2333444555555
Q ss_pred CCCCccEEEEcCC
Q 035647 890 RSQKLKMLEIYNC 902 (938)
Q Consensus 890 ~l~~L~~L~l~~c 902 (938)
++++|+.|++++|
T Consensus 564 ~l~~L~~L~Ls~N 576 (636)
T 4eco_A 564 LCPSLTQLQIGSN 576 (636)
T ss_dssp GCSSCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 5666666666665
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.2e-24 Score=259.87 Aligned_cols=250 Identities=15% Similarity=0.128 Sum_probs=168.5
Q ss_pred ccCceEEEEEEcCCCCC------------------Cccccc--CCCCceEEEEecCCCcchhhhhhhhhccCcccccCCC
Q 035647 540 CQEELRHSILFLGYNAS------------------LPVCIY--NAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTE 599 (938)
Q Consensus 540 ~~~~lr~l~l~~~~~~~------------------~~~~~~--~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~ 599 (938)
...+++.|++.+|.+.. +|..+. ++++|+.|++++| .....+|..|+++++|++|++.
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N--~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC--PNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC--TTCCSCCGGGGGCSSCCEEECT
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC--CCCccChHHHhCCCCCCEEECc
Confidence 34788999999998887 888877 9999999999987 5567788889999999998832
Q ss_pred --------CcchhccCCC-------cccEEeecCCCCCcccch--hhhcccCCCeEEeCCccccccCccCCCCCCCCcCC
Q 035647 600 --------ELPETCCELC-------NLQTIEIEECSNLRRLPQ--RIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLS 662 (938)
Q Consensus 600 --------~lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 662 (938)
.+|..++++. +|++|+|++|. +..+|. .++++++|++|++++|.+..+| .++++++|+.|+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence 3676666554 99999999998 778998 8999999999999999988888 889999999998
Q ss_pred ceEecCCCCCCCCccCcccccc-ccccCCeEEEcCCCCCCChhhhhhccCccc--cccCceEEEecCCCCCCcccccccc
Q 035647 663 EFVVSGRGKYGNKACNLEGMRD-LNNLRGSLIIRGLGNVTSIDEAKTTNLDKK--KNLVHLELRFNKEKDDGAGEAMNLE 739 (938)
Q Consensus 663 ~~~~~~~~~~~~~~~~l~~L~~-L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~ 739 (938)
+..+.... .+. .+..+.. |. .+.+.... +.. .+..+..+ .+|+.|++++|.+.+..+.
T Consensus 602 Ls~N~l~~-lp~---~l~~l~~~L~----~L~Ls~N~-L~~----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~------ 662 (876)
T 4ecn_A 602 LDYNQIEE-IPE---DFCAFTDQVE----GLGFSHNK-LKY----IPNIFNAKSVYVMGSVDFSYNKIGSEGRN------ 662 (876)
T ss_dssp CCSSCCSC-CCT---TSCEECTTCC----EEECCSSC-CCS----CCSCCCTTCSSCEEEEECCSSCTTTTSSS------
T ss_pred CcCCcccc-chH---HHhhccccCC----EEECcCCC-CCc----CchhhhccccCCCCEEECcCCcCCCcccc------
Confidence 88777652 222 2333333 33 23333211 111 12233333 3488888888887642110
Q ss_pred ccccHHHHhhhcC--CCCCcceEEEeecCCCCCCCchhh-hccCccEEEEeCCCCCCCCCCCC--------CCCCcccee
Q 035647 740 NEVNHEAISEALQ--APPNIESLEMCYYKGKTALPSWVV-LLNKLKKLYLTHCNNCEIMPSLG--------KLPSLEILQ 808 (938)
Q Consensus 740 ~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~l~--------~l~~L~~L~ 808 (938)
++..+. .+++|+.|+|++|.+.. +|.++. .+++|+.|+|++|.....++.+. ++++|+.|+
T Consensus 663 -------l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 663 -------ISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp -------CSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred -------chhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence 011111 23467777777777775 776654 67777777777775443322222 233777777
Q ss_pred eccccCceEeCcc
Q 035647 809 IIGMRSVKRVGDE 821 (938)
Q Consensus 809 L~~~~~l~~~~~~ 821 (938)
|++|. ++.+|..
T Consensus 735 Ls~N~-L~~lp~~ 746 (876)
T 4ecn_A 735 LRFNK-LTSLSDD 746 (876)
T ss_dssp CCSSC-CCCCCGG
T ss_pred CCCCC-CccchHH
Confidence 77764 4455443
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.9e-25 Score=263.68 Aligned_cols=356 Identities=16% Similarity=0.164 Sum_probs=216.6
Q ss_pred CceEEEEEEcCCCCC-CcccccCCCCceEEEEecCCC-------------------------------------------
Q 035647 542 EELRHSILFLGYNAS-LPVCIYNAKKLRSLLIYSSLY------------------------------------------- 577 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~------------------------------------------- 577 (938)
.+++.+++.++.+.. +|+.+.++++|++|+|++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 578899998887753 788999999999999998731
Q ss_pred --------------------------------cchhhhhhhhhccCcccccC-----CCC------------------cc
Q 035647 578 --------------------------------DLSAVLRYFFDQLTCLRALR-----TEE------------------LP 602 (938)
Q Consensus 578 --------------------------------~~~~~l~~~~~~l~~Lr~L~-----i~~------------------lp 602 (938)
+....+|..++++++|++|+ +.. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 01112556666666666666 444 66
Q ss_pred hhcc--CCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCcc-cc--ccCccCCCC------CCCCcCCceEecCCCC
Q 035647 603 ETCC--ELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVY-LD--YMPKGIERL------TCLRTLSEFVVSGRGK 671 (938)
Q Consensus 603 ~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~-l~--~lp~~i~~L------~~L~~L~~~~~~~~~~ 671 (938)
..++ ++++|++|++++|...+.+|..++++++|++|++++|. +. .+|..++++ ++|++|++..+....
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~- 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT- 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-
Confidence 6666 66666666666666555566666666666666666665 55 366655554 666666665554442
Q ss_pred CCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhc
Q 035647 672 YGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEAL 751 (938)
Q Consensus 672 ~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 751 (938)
.+. ...+..++.|. .+.+... .+....+ .+..+++|+.|++++|.+. .++..+
T Consensus 320 ip~-~~~l~~l~~L~----~L~L~~N----~l~g~ip-~~~~l~~L~~L~L~~N~l~-----------------~lp~~l 372 (636)
T 4eco_A 320 FPV-ETSLQKMKKLG----MLECLYN----QLEGKLP-AFGSEIKLASLNLAYNQIT-----------------EIPANF 372 (636)
T ss_dssp CCC-HHHHTTCTTCC----EEECCSC----CCEEECC-CCEEEEEESEEECCSSEEE-----------------ECCTTS
T ss_pred cCc-hhhhccCCCCC----EEeCcCC----cCccchh-hhCCCCCCCEEECCCCccc-----------------cccHhh
Confidence 111 00122222222 2222211 1111112 4555666667766666543 234445
Q ss_pred CCCCC-cceEEEeecCCCCCCCchhhhcc--CccEEEEeCCCCCCCCC-CCC-------CCCCccceeeccccCceEeCc
Q 035647 752 QAPPN-IESLEMCYYKGKTALPSWVVLLN--KLKKLYLTHCNNCEIMP-SLG-------KLPSLEILQIIGMRSVKRVGD 820 (938)
Q Consensus 752 ~~~~~-L~~L~L~~~~~~~~lp~~~~~l~--~L~~L~L~~~~~~~~l~-~l~-------~l~~L~~L~L~~~~~l~~~~~ 820 (938)
..+++ |+.|++++|.+.. +|.++..++ +|+.|++++|......| .++ .+++|++|++++|. ++.+|.
T Consensus 373 ~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~ 450 (636)
T 4eco_A 373 CGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPK 450 (636)
T ss_dssp EEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCT
T ss_pred hhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCH
Confidence 55666 7777777777664 776665433 67777777776554443 344 55667777776654 444444
Q ss_pred cccc----------CCCCCCCCCCc-ccc-------cCCccceeeccCccccccccccccccc--cCCcccEEeecCCcc
Q 035647 821 EFWG----------IENHHSSSSSS-SIV-------AFPKLKKLTLRGLYEWEEWEIEKEDIA--VMPQLISLELGSCSK 880 (938)
Q Consensus 821 ~~~~----------~~~~~~~~~~~-~~~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~--~l~~L~~L~l~~c~~ 880 (938)
.++. ..|... ..+. .+. .+++|+.|++++| .+..++ ..+. .+++|+.|++++|.
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp---~~~~~~~l~~L~~L~Ls~N~- 524 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLS---DDFRATTLPYLVGIDLSYNS- 524 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCC---GGGSTTTCTTCCEEECCSSC-
T ss_pred HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-cCCccC---hhhhhccCCCcCEEECCCCC-
Confidence 3211 012222 2222 111 2338999999998 445554 3354 89999999999985
Q ss_pred ccCCCcCCCCCCCccEEEEcCCcchHH-hhccCCCCCcccccCcCceeeccccc
Q 035647 881 LKSLPVDLLRSQKLKMLEIYNCPILKE-RFKKDVGEDWAKIFHIPNIQINGHNV 933 (938)
Q Consensus 881 l~~lp~~l~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~i~~i~~i~i~~~~~ 933 (938)
+..+|..+.++++|+.|++++|+.+.. .+.+..+..+..++++..+.+++|.|
T Consensus 525 l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 666999899999999999977653221 23344566667778888888888887
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2.9e-24 Score=255.40 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=202.7
Q ss_pred CceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEE
Q 035647 542 EELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L 614 (938)
..++++++.+|.+..+ |..+.++++|++|++++| ......|..|+++++|++|+ +..+ |..++++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC--QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC--ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 5788888888887775 557788888888888887 44455577788888888887 3333 5677888888888
Q ss_pred eecCCCCCccc-chhhhcccCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCCCCCCCccCccccc--ccc----
Q 035647 615 EIEECSNLRRL-PQRIGKLVNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMR--DLN---- 686 (938)
Q Consensus 615 ~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~--~L~---- 686 (938)
++++|. +..+ |..++++++|++|++++|.+..++ +.+..+++|++|++..+......+.....+..+. .|.
T Consensus 111 ~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 888887 6665 456778888888888888776653 3344477777777766554432111111222222 000
Q ss_pred ccCC------------eEEEc-------------------------------------------------CCCCCCChhh
Q 035647 687 NLRG------------SLIIR-------------------------------------------------GLGNVTSIDE 705 (938)
Q Consensus 687 ~L~~------------~l~i~-------------------------------------------------~~~~~~~~~~ 705 (938)
.+.+ .+.+. .+.. ..+..
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~-n~l~~ 268 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK-HYFFN 268 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT-CCCSS
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec-CccCc
Confidence 0000 00000 0000 00011
Q ss_pred hhhccCccccccCceEEEecCCCCCCcc-------ccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCc-hhhh
Q 035647 706 AKTTNLDKKKNLVHLELRFNKEKDDGAG-------EAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPS-WVVL 777 (938)
Q Consensus 706 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~-~~~~ 777 (938)
.....+..+++|+.|++++|.+...+.. +.+.+.++......+..+..+++|+.|++++|.+.+.+|. .+..
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 1122255566777777777766543211 1122222222222233444455555555555554433333 2444
Q ss_pred ccCccEEEEeCCCCCCC---CCCCCCCCCccceeeccccCceEeC-cccc-------------------------c----
Q 035647 778 LNKLKKLYLTHCNNCEI---MPSLGKLPSLEILQIIGMRSVKRVG-DEFW-------------------------G---- 824 (938)
Q Consensus 778 l~~L~~L~L~~~~~~~~---l~~l~~l~~L~~L~L~~~~~l~~~~-~~~~-------------------------~---- 824 (938)
+++|+.|++++|..... ...++.+++|++|++++|. +..++ ..+. .
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 55555555555443222 1134444444444444433 22221 1110 0
Q ss_pred -----CCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEE
Q 035647 825 -----IENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEI 899 (938)
Q Consensus 825 -----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 899 (938)
..+......+..+..+++|++|++++|.........+..+..+++|+.|++++|......|..+.++++|+.|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 012222333445556677777777776432211111233567788888888877544445677778888888888
Q ss_pred cCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 900 YNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 900 ~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
++|.. ....+..+..++.+ .+.+++|.|++
T Consensus 508 s~N~l-----~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 508 SHNRL-----TSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CSSCC-----CGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCcc-----CcCChhHhCccccc-EEECcCCcccc
Confidence 88832 22223344445555 56666666654
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=9.8e-24 Score=250.89 Aligned_cols=359 Identities=16% Similarity=0.124 Sum_probs=218.7
Q ss_pred cCceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccE
Q 035647 541 QEELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQT 613 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~ 613 (938)
..+++++++.+|.+..++. .+.++++|++|++++| ......|..|+++++|++|+ +..+ |..++++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC--EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC--cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 3789999999998887655 7889999999999987 44455577899999999998 5555 778999999999
Q ss_pred EeecCCCCCcccc-hhhhcccCCCeEEeCCcccc--ccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCC
Q 035647 614 IEIEECSNLRRLP-QRIGKLVNLRHLIFVDVYLD--YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRG 690 (938)
Q Consensus 614 L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 690 (938)
|++++|. +..+| ..++++++|++|++++|.+. .+|..++++++|++|++..+......+... ..+..|+..-.
T Consensus 109 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~~l~ 184 (606)
T 3vq2_A 109 LVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL---QFLRENPQVNL 184 (606)
T ss_dssp EECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT---HHHHHCTTCCC
T ss_pred EEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh---hhhhccccccc
Confidence 9999998 77666 66899999999999999976 478889999999999988876655333222 22222221000
Q ss_pred eEEEcCCCCCCCh---------------------hhhhhcc---------------------------------------
Q 035647 691 SLIIRGLGNVTSI---------------------DEAKTTN--------------------------------------- 710 (938)
Q Consensus 691 ~l~i~~~~~~~~~---------------------~~~~~~~--------------------------------------- 710 (938)
.+.+.... +... ....+..
T Consensus 185 ~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 185 SLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred eeeccCCC-cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 11111100 0000 0000111
Q ss_pred -----------------CccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCc
Q 035647 711 -----------------LDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPS 773 (938)
Q Consensus 711 -----------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~ 773 (938)
+..+.+|+.|+++++.+.. ++ .+..+++|+.|++++|.+.. +|.
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------l~-~l~~~~~L~~L~l~~n~l~~-lp~ 324 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-----------------LE-DVPKHFKWQSLSIIRCQLKQ-FPT 324 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-----------------CC-CCCTTCCCSEEEEESCCCSS-CCC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchh-----------------hh-hccccccCCEEEcccccCcc-ccc
Confidence 2223333333333333221 11 34445566666666666633 664
Q ss_pred hhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEe---CcccccC--------CCCCCCCCCcccccCCc
Q 035647 774 WVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRV---GDEFWGI--------ENHHSSSSSSSIVAFPK 842 (938)
Q Consensus 774 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~--------~~~~~~~~~~~~~~l~~ 842 (938)
+ .+++|+.|++++|...... .++.+++|++|++++|. ++.+ +..+... ........+..+..+++
T Consensus 325 ~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 325 L--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400 (606)
T ss_dssp C--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTT
T ss_pred C--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCC
Confidence 3 5666666666666433333 44556666666666654 3333 2211111 00001112344556777
Q ss_pred cceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccC
Q 035647 843 LKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFH 922 (938)
Q Consensus 843 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~ 922 (938)
|+.|++++|......+ ...+..+++|+.|++++|......|..+.++++|+.|++++|..-.. ..+..+..+++
T Consensus 401 L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~ 474 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTE--FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN----TLSNVFANTTN 474 (606)
T ss_dssp CCEEECTTSEEESTTT--TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----EECSCCTTCTT
T ss_pred CCeeECCCCccCCccC--hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc----chHHhhccCCC
Confidence 7777777763322211 12356778888888888865555677777888888888888842111 13445567778
Q ss_pred cCceeeccccccC
Q 035647 923 IPNIQINGHNVQG 935 (938)
Q Consensus 923 i~~i~i~~~~~~~ 935 (938)
+..+.+++|.|.+
T Consensus 475 L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 475 LTFLDLSKCQLEQ 487 (606)
T ss_dssp CCEEECTTSCCCE
T ss_pred CCEEECCCCcCCc
Confidence 8888888888765
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.3e-23 Score=244.66 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=107.0
Q ss_pred CceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchh-ccCCCcccEE
Q 035647 542 EELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPET-CCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~-i~~L~~L~~L 614 (938)
..++++++.+|.+... |..+.++++|++|++++| ......|..|+++++|++|+ +..+|.. ++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS--RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC--CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 6899999999988775 467889999999999987 44455567889999999998 5566654 8999999999
Q ss_pred eecCCCCCcc--cchhhhcccCCCeEEeCCcc-ccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCcc
Q 035647 615 EIEECSNLRR--LPQRIGKLVNLRHLIFVDVY-LDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLE 680 (938)
Q Consensus 615 ~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~ 680 (938)
++++|. +.. .|..++++++|++|++++|. +..+|. .++++++|++|++..+......+.....+.
T Consensus 104 ~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 104 NLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp ECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred ECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 999998 664 46678999999999999988 777774 688999999999888776654443333333
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.6e-23 Score=248.99 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=84.0
Q ss_pred ccCceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcc-hhccCCCccc
Q 035647 540 CQEELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELP-ETCCELCNLQ 612 (938)
Q Consensus 540 ~~~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp-~~i~~L~~L~ 612 (938)
...+++++++.+|.+..+ |..+.++++|++|++++| ......|..|+++++|++|+ +..+| ..++++++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN--PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC--cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 446788888888877765 456778888888888886 34444577888888888887 44555 5688888888
Q ss_pred EEeecCCCCCc--ccchhhhcccCCCeEEeCCccccccCc-cCCCCCCC
Q 035647 613 TIEIEECSNLR--RLPQRIGKLVNLRHLIFVDVYLDYMPK-GIERLTCL 658 (938)
Q Consensus 613 ~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L 658 (938)
+|++++|. +. .+|..++++++|++|++++|.+..+++ .++.+++|
T Consensus 132 ~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 132 KLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp EEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred EEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 88888887 54 467888888888888888887665543 34444333
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=5.5e-24 Score=251.25 Aligned_cols=378 Identities=16% Similarity=0.147 Sum_probs=211.2
Q ss_pred CceEEEEEEcCCCCCCc-ccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcc-hhccCCCcccEE
Q 035647 542 EELRHSILFLGYNASLP-VCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELP-ETCCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp-~~i~~L~~L~~L 614 (938)
..++++++++|.+..++ ..+.++++|++|++++| ......+..|+++++|++|+ +..+| ..+.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCC--cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 56788888888776643 36777888888888876 33344456677788888877 44444 567777888888
Q ss_pred eecCCCCCcccch-hhhcccCCCeEEeCCccccc--cCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCC-
Q 035647 615 EIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDY--MPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRG- 690 (938)
Q Consensus 615 ~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~- 690 (938)
++++|. +..+|. .++++++|++|++++|.+.. +|..|+++++|++|++..+......+.. +..+..|+....
T Consensus 106 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~~~~~ 181 (570)
T 2z63_A 106 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD---LRVLHQMPLLNLS 181 (570)
T ss_dssp ECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG---GHHHHTCTTCCCE
T ss_pred cccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH---ccchhccchhhhh
Confidence 888776 666665 47777788888888777654 5777777777777777655443321111 111111100000
Q ss_pred ----------------------eEEEcC---------------------------CCCCC--------------------
Q 035647 691 ----------------------SLIIRG---------------------------LGNVT-------------------- 701 (938)
Q Consensus 691 ----------------------~l~i~~---------------------------~~~~~-------------------- 701 (938)
.+.+.. +....
T Consensus 182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 000000 00000
Q ss_pred -------ChhhhhhccCccccccCceEEEecCCCCCC----------------------ccc-----cccccccccHHHH
Q 035647 702 -------SIDEAKTTNLDKKKNLVHLELRFNKEKDDG----------------------AGE-----AMNLENEVNHEAI 747 (938)
Q Consensus 702 -------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------------------~~~-----~~~~~~~~~~~~~ 747 (938)
.........+..+++|+.|++++|.+...+ ... .+.+.++.....+
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence 000011122333455555555554433211 100 0000000000000
Q ss_pred hhhcCCCCCcceEEEeecCCCCC--CCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCc-c-cc
Q 035647 748 SEALQAPPNIESLEMCYYKGKTA--LPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGD-E-FW 823 (938)
Q Consensus 748 ~~~l~~~~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~-~-~~ 823 (938)
....+++|+.|++++|.+... .|..+..+++|++|++++|......+.++.+++|++|++.+|. +...+. . +.
T Consensus 342 --~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 418 (570)
T 2z63_A 342 --SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFL 418 (570)
T ss_dssp --CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTT
T ss_pred --ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccchhhhh
Confidence 013456666666666665541 1445556666666666666543333335555555555555543 222211 0 10
Q ss_pred c---------CCCCCCCCCCcccccCCccceeeccCccccc-cccccccccccCCcccEEeecCCccccCCCcCCCCCCC
Q 035647 824 G---------IENHHSSSSSSSIVAFPKLKKLTLRGLYEWE-EWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQK 893 (938)
Q Consensus 824 ~---------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 893 (938)
. ..+......+..+..+++|++|++++|.... .+ |..+..+++|+.|++++|......|..+.++++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 0 0112222334456788999999999885331 23 344678999999999998644445788888999
Q ss_pred ccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccCC
Q 035647 894 LKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 894 L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~~ 936 (938)
|+.|++++|. +....+..+..++++..+.+++|.++|.
T Consensus 496 L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 496 LQVLNMASNQ-----LKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSC-----CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEeCCCCc-----CCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9999999983 3333344566778888899999998874
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.2e-23 Score=240.83 Aligned_cols=322 Identities=19% Similarity=0.185 Sum_probs=194.3
Q ss_pred CceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhh-hhhhhccCcccccC-----CCCc-chhccCCCcccE
Q 035647 542 EELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVL-RYFFDQLTCLRALR-----TEEL-PETCCELCNLQT 613 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l-~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~ 613 (938)
.+++++++.+|.+..+ |..+.++++|++|++++| .....+ +..|.++++|++|+ +..+ |..++++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n--~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ--TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC--STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCC--cccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 7899999999998875 677899999999999997 333233 67799999999998 3444 778999999999
Q ss_pred EeecCCCCCcc-cchh--hhcccCCCeEEeCCcccccc-Ccc-CCCCCCCCcCCceEecCCCCCCCCccCcccccccccc
Q 035647 614 IEIEECSNLRR-LPQR--IGKLVNLRHLIFVDVYLDYM-PKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNL 688 (938)
Q Consensus 614 L~L~~~~~l~~-lp~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L 688 (938)
|++++|. +.. +|.. ++++++|++|++++|.+..+ |.. ++++++|++|++..+......+.....+.. ..|.
T Consensus 108 L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-~~L~-- 183 (455)
T 3v47_A 108 LTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFT-- 183 (455)
T ss_dssp EECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT-CEEE--
T ss_pred EeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc-cccc--
Confidence 9999998 554 5555 89999999999999998877 444 889999999998887765533332222211 1222
Q ss_pred CCeEEEcCCCC--CC--ChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCC----------
Q 035647 689 RGSLIIRGLGN--VT--SIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAP---------- 754 (938)
Q Consensus 689 ~~~l~i~~~~~--~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------- 754 (938)
.+.+....- .. .........+..+++|+.|++++|.+.+..+ ..+.. ....
T Consensus 184 --~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~------------~~~~~-~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 184 --LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA------------KRFFD-AIAGTKIQSLILSN 248 (455)
T ss_dssp --EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH------------HHHHH-HTTTCCEEEEECTT
T ss_pred --ccccccCcccccchhhccccccccccccceeeeEecCCCcccccch------------hhhhc-cccccceeeEeecc
Confidence 222222110 00 0111112334566789999999998763100 11111 1112
Q ss_pred --------------------------CCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccce
Q 035647 755 --------------------------PNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEIL 807 (938)
Q Consensus 755 --------------------------~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 807 (938)
++|+.|++++|.+.+..|.++..+++|+.|+|++|...+..| .++.+++|++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 345555555555555445555555555555555555444333 45555555555
Q ss_pred eeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCc-
Q 035647 808 QIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPV- 886 (938)
Q Consensus 808 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~- 886 (938)
+|++|. +..++.. .+..+++|++|++++|. +..+. +..+..+++|++|++++|. ++.+|.
T Consensus 329 ~Ls~N~-l~~~~~~--------------~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~ 389 (455)
T 3v47_A 329 NLSQNF-LGSIDSR--------------MFENLDKLEVLDLSYNH-IRALG--DQSFLGLPNLKELALDTNQ-LKSVPDG 389 (455)
T ss_dssp ECCSSC-CCEECGG--------------GGTTCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred ECCCCc-cCCcChh--------------HhcCcccCCEEECCCCc-ccccC--hhhccccccccEEECCCCc-cccCCHh
Confidence 555543 3333211 12345566666666552 22221 2234455666666665553 444443
Q ss_pred CCCCCCCccEEEEcCCc
Q 035647 887 DLLRSQKLKMLEIYNCP 903 (938)
Q Consensus 887 ~l~~l~~L~~L~l~~c~ 903 (938)
.+..+++|+.|++++||
T Consensus 390 ~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCcccEEEccCCC
Confidence 23455666666666553
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.7e-23 Score=242.12 Aligned_cols=355 Identities=14% Similarity=0.110 Sum_probs=210.9
Q ss_pred CceEEEEEEcCCCCCCc-ccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEe
Q 035647 542 EELRHSILFLGYNASLP-VCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIE 615 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~ 615 (938)
.+++++++++|.+..++ ..+..+++|++|++++| ......|..|+++++|++|+ +..+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN--RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS--CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC--ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 78999999999988765 57889999999999997 44455688899999999998 6778876 899999999
Q ss_pred ecCCCCCcc--cchhhhcccCCCeEEeCCccccccCccCCCCCCC--CcCCceEecC--CCCCCCCccCcc---------
Q 035647 616 IEECSNLRR--LPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCL--RTLSEFVVSG--RGKYGNKACNLE--------- 680 (938)
Q Consensus 616 L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~~~~~~~--~~~~~~~~~~l~--------- 680 (938)
+++|. +.. +|..++++++|++|++++|.+.. ..+..+++| +.|++..+.. ....+.....+.
T Consensus 97 L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCc-cccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99998 654 67889999999999999998765 356777777 8888887766 332222222211
Q ss_pred --------------ccccccccCCeEEEcCCC---CCCChhhhhhccCccc---------------------------cc
Q 035647 681 --------------GMRDLNNLRGSLIIRGLG---NVTSIDEAKTTNLDKK---------------------------KN 716 (938)
Q Consensus 681 --------------~L~~L~~L~~~l~i~~~~---~~~~~~~~~~~~l~~~---------------------------~~ 716 (938)
.+..|..+ .+.... ......... ..+..+ .+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L----~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELS----NIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEEC----CEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred cCcchhhhhhhhhhcccceeec----cccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 11222211 111100 000000000 122222 25
Q ss_pred cCceEEEecCCCCCCcccc-------------cccccccc--H-HHHhhh---------------------cCCCCCcce
Q 035647 717 LVHLELRFNKEKDDGAGEA-------------MNLENEVN--H-EAISEA---------------------LQAPPNIES 759 (938)
Q Consensus 717 L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~--~-~~~~~~---------------------l~~~~~L~~ 759 (938)
|+.|++++|.+.+..+... ..+..+.. . ..+... ...+++|++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 328 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccE
Confidence 6666666555442111110 00000000 0 000000 134455555
Q ss_pred EEEeecCCCCCCCchhhhccCccEEEEeCCCCCC--CCC-CCCCCCCccceeeccccCceE-eCcccccCCCCCCCCCCc
Q 035647 760 LEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCE--IMP-SLGKLPSLEILQIIGMRSVKR-VGDEFWGIENHHSSSSSS 835 (938)
Q Consensus 760 L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~l~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~~~~~~ 835 (938)
|++++|.+.+.+|.++..+++|+.|+|++|.... .+| .++.+++|++|++++|. +.. +|..
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~-------------- 393 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG-------------- 393 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC--------------
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccc--------------
Confidence 5555555554445555555555555555554332 111 24455555555555544 222 2221
Q ss_pred ccccCCccceeeccCccccccccccccccccC-CcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCC
Q 035647 836 SIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVM-PQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVG 914 (938)
Q Consensus 836 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 914 (938)
.+..+++|++|++++|......+ . .+ ++|+.|++++| .++.+|..+..+++|+.|++++|. +. ..+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~---~---~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-----l~-~l~ 460 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIF---R---CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-----LK-SVP 460 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGG---G---SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-----CC-CCC
T ss_pred hhccCccCCEEECcCCCCCcchh---h---hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-----CC-ccC
Confidence 24567888888888874323221 1 22 68888888888 467888877788889999998883 22 233
Q ss_pred CC-cccccCcCceeeccccccCC
Q 035647 915 ED-WAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 915 ~~-~~~i~~i~~i~i~~~~~~~~ 936 (938)
.. +..++++..+.+++|.+++.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHhccCCcccEEECcCCCCccc
Confidence 33 56677788888888888763
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.2e-22 Score=232.61 Aligned_cols=242 Identities=19% Similarity=0.159 Sum_probs=126.4
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEee
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEI 616 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L 616 (938)
.+++.+++.++.+..+| .+..+++|++|++++|. ...++. +.++++|++|+ +..+|. +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~---l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ---LTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCc---cCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 56777777777666555 36677777777777752 223333 67777777776 445555 777777777777
Q ss_pred cCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcC
Q 035647 617 EECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRG 696 (938)
Q Consensus 617 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 696 (938)
++|. +..+|. ++++++|++|++++|.+..+| .++.+++|+.|++.. .... ...+..++.|. .+.+.+
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~-----~~~~~~l~~L~----~L~l~~ 186 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTD-----LKPLANLTTLE----RLDISS 186 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCC-----CGGGTTCTTCC----EEECCS
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccC-----chhhccCCCCC----EEECcC
Confidence 7776 666665 777777777777777766665 366677777666532 2211 11122222222 222222
Q ss_pred CCCCCChhhhhhccCccccccCceEEEecCCCCCCcc------ccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC
Q 035647 697 LGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAG------EAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA 770 (938)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 770 (938)
.. +... ..+..+++|+.|++++|.+.+..+. ..+.+..+.... ...+..+++|+.|++++|.+.+
T Consensus 187 n~-l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~- 257 (466)
T 1o6v_A 187 NK-VSDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN- 257 (466)
T ss_dssp SC-CCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-
T ss_pred Cc-CCCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCCCcccc-
Confidence 11 1111 1234455555555555554432110 000000000000 0234445555666666555554
Q ss_pred CCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeecccc
Q 035647 771 LPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMR 813 (938)
Q Consensus 771 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 813 (938)
++. +..+++|+.|++++|..... +.+..+++|+.|++++|.
T Consensus 258 ~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 258 LAP-LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQ 298 (466)
T ss_dssp CGG-GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC
T ss_pred chh-hhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCc
Confidence 333 44555566666655543322 225555556666555543
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.9e-23 Score=248.47 Aligned_cols=366 Identities=17% Similarity=0.128 Sum_probs=222.5
Q ss_pred EEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEeecC
Q 035647 545 RHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIEIEE 618 (938)
Q Consensus 545 r~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~L~~ 618 (938)
+.++..+..+..+|..+.. +++.|++++| ......|..|+++++|++|+ +..+ |..|.++++|++|++++
T Consensus 15 ~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPN--STECLEFSFN--VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSCT--TCCEEECTTC--CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcccCcCCCCC--cCcEEEccCC--ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 3455566667778877653 7999999997 44455578999999999999 3444 67899999999999999
Q ss_pred CCCCcc-cchhhhcccCCCeEEeCCcccccc-CccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcC
Q 035647 619 CSNLRR-LPQRIGKLVNLRHLIFVDVYLDYM-PKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRG 696 (938)
Q Consensus 619 ~~~l~~-lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 696 (938)
|. +.. .|..++++++|++|++++|.+..+ |..++++++|++|++..+............+..|+.| .+.+
T Consensus 91 n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------~L~~ 162 (606)
T 3t6q_A 91 NP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL-------DFQN 162 (606)
T ss_dssp CC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE-------ECCS
T ss_pred Cc-ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE-------Eccc
Confidence 98 555 577899999999999999998887 5679999999999998887665322222223333322 2221
Q ss_pred CCCCCChhhhhhccCccccccC--ceEEEecCCCCCCcccc-------c-------------------------------
Q 035647 697 LGNVTSIDEAKTTNLDKKKNLV--HLELRFNKEKDDGAGEA-------M------------------------------- 736 (938)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~-------~------------------------------- 736 (938)
. .+.......+..+.+|+ .|++++|.+.+..+... +
T Consensus 163 n----~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 163 N----AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp S----CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred C----cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 1 11111122334445555 44555554432211100 0
Q ss_pred ---------------------cccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCC
Q 035647 737 ---------------------NLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIM 795 (938)
Q Consensus 737 ---------------------~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 795 (938)
.+.++......+..+..+++|++|++++|.+.. +|.++..+++|++|++++|......
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCc
Confidence 000000001112235556677777777777665 7776667777777777777654443
Q ss_pred C-CCCCCCCccceeeccccCceEeCcccc-cC---------CCCCCCCC--CcccccCCccceeeccCcccccccccccc
Q 035647 796 P-SLGKLPSLEILQIIGMRSVKRVGDEFW-GI---------ENHHSSSS--SSSIVAFPKLKKLTLRGLYEWEEWEIEKE 862 (938)
Q Consensus 796 ~-~l~~l~~L~~L~L~~~~~l~~~~~~~~-~~---------~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 862 (938)
| .++.+++|++|++.+|.....++.... .. .+...+.. +..+..+++|++|++++|. +..+. +.
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~ 394 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLK--TE 394 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEEC--TT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCC--HH
Confidence 3 456666777777766543323332211 00 11111111 3345567777777777763 22221 33
Q ss_pred ccccCCcccEEeecCCccccCCCc-CCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 863 DIAVMPQLISLELGSCSKLKSLPV-DLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 863 ~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
.+..+++|+.|++++|......|. .+.++++|+.|++++|. +....+..+..++++..+.+++|.+.+
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-----LDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-----CBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-----cCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 356677788888877754333333 36777888888888873 233334455667788888888888876
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.9e-23 Score=227.33 Aligned_cols=296 Identities=16% Similarity=0.142 Sum_probs=166.7
Q ss_pred cCceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEe
Q 035647 541 QEELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIE 615 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~ 615 (938)
.++++++++.++.+..++ .+..+++|++|++++|. ...++. +..+++|++|+ +..+| .+.++++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~---i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ---ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCCc---cccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 477899999998888665 47889999999999873 233343 77888888887 45554 578888888888
Q ss_pred ecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEc
Q 035647 616 IEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIR 695 (938)
Q Consensus 616 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 695 (938)
+++|. +..+|. +..+++|++|++++|.....+..+..+++|++|++..+..... ..+..++.|. .+.+.
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~l~~L~----~L~l~ 185 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-----TPIANLTDLY----SLSLN 185 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCS----EEECT
T ss_pred CcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-----hhhccCCCCC----EEEcc
Confidence 88887 777776 7888888888888886333344577888888887765544331 1122222222 22222
Q ss_pred CCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchh
Q 035647 696 GLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWV 775 (938)
Q Consensus 696 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~ 775 (938)
+.. +... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.. +|. +
T Consensus 186 ~n~-l~~~-----~~~~~l~~L~~L~l~~n~l~~~------------------~~~~~~~~L~~L~l~~n~l~~-~~~-~ 239 (347)
T 4fmz_A 186 YNQ-IEDI-----SPLASLTSLHYFTAYVNQITDI------------------TPVANMTRLNSLKIGNNKITD-LSP-L 239 (347)
T ss_dssp TSC-CCCC-----GGGGGCTTCCEEECCSSCCCCC------------------GGGGGCTTCCEEECCSSCCCC-CGG-G
T ss_pred CCc-cccc-----ccccCCCccceeecccCCCCCC------------------chhhcCCcCCEEEccCCccCC-Ccc-h
Confidence 211 1111 1134445555555555544420 013344555555555555554 443 4
Q ss_pred hhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccc
Q 035647 776 VLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWE 855 (938)
Q Consensus 776 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 855 (938)
..+++|+.|++++|... .++.+..+++|++|++++|. ++.++ .+..+++|+.|++++|. +.
T Consensus 240 ~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~----------------~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQ-ISDIS----------------VLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp TTCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCG----------------GGGGCTTCSEEECCSSC-CC
T ss_pred hcCCCCCEEECCCCccC-CChhHhcCCCcCEEEccCCc-cCCCh----------------hhcCCCCCCEEECcCCc-CC
Confidence 55555555555555322 23445555555555555543 22221 12345555555555552 22
Q ss_pred cccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCC
Q 035647 856 EWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 856 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 902 (938)
... +..+..+++|+.|++++|+ +..++. +..+++|+.|++++|
T Consensus 301 ~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 301 NED--MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp GGG--HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred CcC--hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 211 1223455555555555553 333333 444555555555555
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.6e-22 Score=237.54 Aligned_cols=358 Identities=15% Similarity=0.114 Sum_probs=223.1
Q ss_pred CceEEEEEEcCCCCCCc-ccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEe
Q 035647 542 EELRHSILFLGYNASLP-VCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIE 615 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~ 615 (938)
.+++++++.+|.+..++ ..+.++++|++|++++| ......|..|+++++|++|+ +..+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN--RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC--CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC--CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 78899999999888766 57889999999999987 44455578889999999998 6678876 889999999
Q ss_pred ecCCCCCcccc--hhhhcccCCCeEEeCCccccccCccCCCCCCC--CcCCceEecC--CCCCCCCccCcc---------
Q 035647 616 IEECSNLRRLP--QRIGKLVNLRHLIFVDVYLDYMPKGIERLTCL--RTLSEFVVSG--RGKYGNKACNLE--------- 680 (938)
Q Consensus 616 L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~~~~~~~--~~~~~~~~~~l~--------- 680 (938)
+++|. +..+| ..++++++|++|++++|.+.. ..+..+++| ++|++..+.. ....+.....+.
T Consensus 128 Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCC-ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 99998 76654 678999999999999988765 345566666 8888877765 332222221111
Q ss_pred -----------ccccccccCCeEEEcCCC--------------CCCCh--------------hhhhhccCccccccCceE
Q 035647 681 -----------GMRDLNNLRGSLIIRGLG--------------NVTSI--------------DEAKTTNLDKKKNLVHLE 721 (938)
Q Consensus 681 -----------~L~~L~~L~~~l~i~~~~--------------~~~~~--------------~~~~~~~l~~~~~L~~L~ 721 (938)
....+.++. .+.+.... ....+ ...... .....+|++|+
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~ 282 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-FFWPRPVEYLN 282 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-HHTTSSEEEEE
T ss_pred CccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-hhhcccccEEE
Confidence 000111111 11111100 00000 000000 00123777888
Q ss_pred EEecCCCCCCcccc-----ccc--------ccccc--H-HHHhhh---------------------cCCCCCcceEEEee
Q 035647 722 LRFNKEKDDGAGEA-----MNL--------ENEVN--H-EAISEA---------------------LQAPPNIESLEMCY 764 (938)
Q Consensus 722 l~~~~~~~~~~~~~-----~~~--------~~~~~--~-~~~~~~---------------------l~~~~~L~~L~L~~ 764 (938)
+++|.+.+..+... ..+ ..... . ..+... ...+++|+.|++++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 88777653222111 000 00000 0 001000 14567777777777
Q ss_pred cCCCCCCCchhhhccCccEEEEeCCCCCCCC--C-CCCCCCCccceeeccccCceE-eCcccccCCCCCCCCCCcccccC
Q 035647 765 YKGKTALPSWVVLLNKLKKLYLTHCNNCEIM--P-SLGKLPSLEILQIIGMRSVKR-VGDEFWGIENHHSSSSSSSIVAF 840 (938)
Q Consensus 765 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l--~-~l~~l~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l 840 (938)
|.+.+..|.++..+++|+.|+|++|...... | .++.+++|++|++++|. +.. +|.. .+..+
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~--------------~~~~l 427 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR--------------TCAWA 427 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC--------------CCCCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChh--------------hhcCc
Confidence 7777666777777777777777777544321 1 46677777777777765 322 3322 24577
Q ss_pred CccceeeccCccccccccccccccccC-CcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCC-cc
Q 035647 841 PKLKKLTLRGLYEWEEWEIEKEDIAVM-PQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGED-WA 918 (938)
Q Consensus 841 ~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~-~~ 918 (938)
++|++|++++|...... + ..+ ++|+.|++++| .++.+|..+.++++|+.|++++|. +. ..+.. +.
T Consensus 428 ~~L~~L~l~~n~l~~~~---~---~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-----l~-~l~~~~~~ 494 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSV---F---RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-----LK-SVPDGVFD 494 (562)
T ss_dssp TTCCEEECCSSCCCGGG---G---SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-----CC-CCCTTSTT
T ss_pred ccCCEEECCCCCCCcch---h---hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-----CC-CCCHHHHh
Confidence 88999999888432222 1 234 68999999888 577888888888999999999883 32 23333 56
Q ss_pred cccCcCceeeccccccCC
Q 035647 919 KIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 919 ~i~~i~~i~i~~~~~~~~ 936 (938)
.++++..+.+++|.+++.
T Consensus 495 ~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TCTTCCCEECCSCCBCCC
T ss_pred cCCCCCEEEecCCCcCCC
Confidence 677788888999888763
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=249.17 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=105.7
Q ss_pred ccCceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhh-hhhhhccCcccccC-----CCCc-chhccCCCcc
Q 035647 540 CQEELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVL-RYFFDQLTCLRALR-----TEEL-PETCCELCNL 611 (938)
Q Consensus 540 ~~~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l-~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L 611 (938)
...+++++++++|.+..+ +..+.++++|++|++++| .....+ |..|+++++|++|+ +..+ |..++++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n--~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ--YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT--CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCC--CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 347899999999998774 678899999999999997 334444 78899999999998 4444 7889999999
Q ss_pred cEEeecCCCCCcccchh--hhcccCCCeEEeCCccccccC--ccCCCCCCCCcCCceEecCCC
Q 035647 612 QTIEIEECSNLRRLPQR--IGKLVNLRHLIFVDVYLDYMP--KGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~~~~ 670 (938)
++|+|++|.....+|.. ++++++|++|++++|.+..++ ..|+++++|++|++..+....
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99999999833446665 889999999999999977664 468999999999988776654
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4.3e-23 Score=230.78 Aligned_cols=300 Identities=17% Similarity=0.125 Sum_probs=229.2
Q ss_pred cCceEEEEEEcCCCCCCccc-ccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcc-hhccCCCcccE
Q 035647 541 QEELRHSILFLGYNASLPVC-IYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELP-ETCCELCNLQT 613 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp-~~i~~L~~L~~ 613 (938)
..+++++++.++.+..+|.. +..+++|++|++++| ......+..|..+++|++|+ +..+| ..+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC--cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 47899999999998888776 578999999999987 34444556899999999998 55554 45899999999
Q ss_pred EeecCCCCCcccchh-hhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCe
Q 035647 614 IEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGS 691 (938)
Q Consensus 614 L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 691 (938)
|++++|. +..+|.. ++++++|++|++++|.+..+++ .++.+++|++|++..+..... .+..++.|. .
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~L~----~ 190 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSLF----H 190 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------CGGGCTTCS----E
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------ccccccccc----e
Confidence 9999998 8888887 5899999999999999888765 488999999999887765541 123333333 2
Q ss_pred EEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCC
Q 035647 692 LIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTAL 771 (938)
Q Consensus 692 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~l 771 (938)
+.+... . ...+....+|+.|++++|.+.. ++ ...+++|+.|++++|.+.+ .
T Consensus 191 L~l~~n----~-----l~~~~~~~~L~~L~l~~n~l~~-----------------~~--~~~~~~L~~L~l~~n~l~~-~ 241 (390)
T 3o6n_A 191 ANVSYN----L-----LSTLAIPIAVEELDASHNSINV-----------------VR--GPVNVELTILKLQHNNLTD-T 241 (390)
T ss_dssp EECCSS----C-----CSEEECCSSCSEEECCSSCCCE-----------------EE--CCCCSSCCEEECCSSCCCC-C
T ss_pred eecccc----c-----ccccCCCCcceEEECCCCeeee-----------------cc--ccccccccEEECCCCCCcc-c
Confidence 222211 0 1122334578999999888763 11 1234789999999999987 4
Q ss_pred CchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccC
Q 035647 772 PSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRG 850 (938)
Q Consensus 772 p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 850 (938)
.++..+++|+.|+|++|......| .++.+++|++|++++|. ++.++.. ...+++|++|++++
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------------~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY---------------GQPIPTLKVLDLSH 304 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS---------------SSCCTTCCEEECCS
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc---------------cCCCCCCCEEECCC
Confidence 678899999999999998666544 68899999999999976 5555432 24789999999999
Q ss_pred ccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchH
Q 035647 851 LYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILK 906 (938)
Q Consensus 851 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 906 (938)
| .+..++ ..+..+++|+.|++++|+ +..+| +..+++|+.|++++||--.
T Consensus 305 n-~l~~~~---~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 305 N-HLLHVE---RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp S-CCCCCG---GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred C-cceecC---ccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence 8 455553 335689999999999985 67776 6678999999999997543
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=3.2e-22 Score=241.22 Aligned_cols=126 Identities=18% Similarity=0.104 Sum_probs=98.5
Q ss_pred CceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcch-hccCCCcccEE
Q 035647 542 EELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPE-TCCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~-~i~~L~~L~~L 614 (938)
.+++++++.+|.+..++. .+.++++|++|++++| ......|..|+++++|++|+ +..+|. .++++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN--TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS--CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC--ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 678899999888877665 5788899999999887 44555677888889999888 567776 58888999999
Q ss_pred eecCCCCCcccc-hhhhcccCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCC
Q 035647 615 EIEECSNLRRLP-QRIGKLVNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 615 ~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~ 670 (938)
++++|. +..+| ..++++++|++|++++|.+..++ ..++++++|++|++..+....
T Consensus 103 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 103 HLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp ECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred ECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 999887 66666 46888899999999988866554 457788888888877665443
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=235.08 Aligned_cols=119 Identities=18% Similarity=0.043 Sum_probs=102.8
Q ss_pred EEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEeecC
Q 035647 545 RHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIEIEE 618 (938)
Q Consensus 545 r~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~L~~ 618 (938)
++++++++.+..+|..+. ++|+.|++++| ......|..|.++++|++|+ +..+ |..++++++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQN--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSS--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCC--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578888999888888776 89999999998 44455567899999999999 5555 67899999999999999
Q ss_pred CCCCcccchhhhcccCCCeEEeCCccccc--cCccCCCCCCCCcCCceEecCCC
Q 035647 619 CSNLRRLPQRIGKLVNLRHLIFVDVYLDY--MPKGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 619 ~~~l~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~ 670 (938)
|. ++.+|.. .+++|++|++++|.+.. +|..++++++|++|++..+....
T Consensus 79 N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 79 NK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred Cc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 98 8899987 89999999999999876 57889999999999999877643
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=231.75 Aligned_cols=290 Identities=20% Similarity=0.181 Sum_probs=181.6
Q ss_pred CceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchh-ccCCCcccEE
Q 035647 542 EELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPET-CCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~-i~~L~~L~~L 614 (938)
.+++.+++.+|.+..+ +..+.++++|++|++++| ......|..|.++++|++|+ +..+|.. +.++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC--ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 4455555555555443 234455555555555554 22222344455555555544 3333332 3445555555
Q ss_pred eecCCCCCcc-cchhhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeE
Q 035647 615 EIEECSNLRR-LPQRIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSL 692 (938)
Q Consensus 615 ~L~~~~~l~~-lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l 692 (938)
+|++|. +.. .|..+.++++|++|++++|.+..+++ .|..+++|++|++..+...
T Consensus 110 ~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------------------- 165 (477)
T 2id5_A 110 DISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----------------------- 165 (477)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----------------------
T ss_pred ECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----------------------
Confidence 555544 322 23334455555555555554433322 3444444444443322111
Q ss_pred EEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCC
Q 035647 693 IIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALP 772 (938)
Q Consensus 693 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp 772 (938)
......+..+++|+.|++++|.+.. .....+..+++|+.|++++|...+.+|
T Consensus 166 ------------~~~~~~l~~l~~L~~L~l~~n~i~~----------------~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 166 ------------SIPTEALSHLHGLIVLRLRHLNINA----------------IRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp ------------SCCHHHHTTCTTCCEEEEESCCCCE----------------ECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred ------------ccChhHhcccCCCcEEeCCCCcCcE----------------eChhhcccCcccceeeCCCCccccccC
Confidence 1112335667899999999998763 122357778999999999998877788
Q ss_pred chhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCc
Q 035647 773 SWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGL 851 (938)
Q Consensus 773 ~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 851 (938)
.......+|+.|+|++|.....++ .+..+++|+.|+|++|. ++.++.. .+..+++|+.|++++|
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--------------~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS--------------MLHELLRLQEIQLVGG 282 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTT--------------SCTTCTTCCEEECCSS
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChh--------------hccccccCCEEECCCC
Confidence 877777799999999996554332 57889999999999876 5555432 2457899999999998
Q ss_pred cccccccccccccccCCcccEEeecCCccccCCCc-CCCCCCCccEEEEcCCcc
Q 035647 852 YEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPV-DLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 852 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~ 904 (938)
.+..+. +..+..+++|+.|++++| .++.+|. .+.++++|+.|++++||-
T Consensus 283 -~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 283 -QLAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -CCSEEC--TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred -ccceEC--HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 344443 345778999999999998 5777764 467899999999999975
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.1e-23 Score=242.37 Aligned_cols=300 Identities=17% Similarity=0.126 Sum_probs=228.8
Q ss_pred cCceEEEEEEcCCCCCCccc-ccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcch-hccCCCcccE
Q 035647 541 QEELRHSILFLGYNASLPVC-IYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPE-TCCELCNLQT 613 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~~-~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~-~i~~L~~L~~ 613 (938)
..+++.+++.++.+..+|.. +..+++|++|++++| ......|..|+.+++|++|+ +..+|. .++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC--CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 46789999999988887765 568999999999987 44455566899999999998 555654 5789999999
Q ss_pred EeecCCCCCcccchh-hhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCe
Q 035647 614 IEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGS 691 (938)
Q Consensus 614 L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 691 (938)
|+|++|. +..+|.. ++++++|++|++++|.+..+|+ .|+.+++|++|++..+..... .+..++.|. .
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~l~~L~----~ 196 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------DLSLIPSLF----H 196 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC------CGGGCTTCS----E
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc------Chhhhhhhh----h
Confidence 9999998 8888877 5899999999999999887766 589999999999887765541 122233333 2
Q ss_pred EEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCC
Q 035647 692 LIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTAL 771 (938)
Q Consensus 692 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~l 771 (938)
+.+... . ...+....+|+.|++++|.+.. ++. ..+++|+.|+|++|.+.+
T Consensus 197 L~l~~n----~-----l~~l~~~~~L~~L~ls~n~l~~-----------------~~~--~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 197 ANVSYN----L-----LSTLAIPIAVEELDASHNSINV-----------------VRG--PVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp EECCSS----C-----CSEEECCTTCSEEECCSSCCCE-----------------EEC--SCCSCCCEEECCSSCCCC--
T ss_pred hhcccC----c-----cccccCCchhheeeccCCcccc-----------------ccc--ccCCCCCEEECCCCCCCC--
Confidence 222211 0 1123344678999999888763 111 123689999999999987
Q ss_pred CchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccC
Q 035647 772 PSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRG 850 (938)
Q Consensus 772 p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 850 (938)
+.++..+++|+.|+|++|.....+| .++.+++|+.|+|++|. +..+|.. +..+|+|+.|+|++
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---------------~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY---------------GQPIPTLKVLDLSH 310 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS---------------SSCCTTCCEEECCS
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc---------------cccCCCCcEEECCC
Confidence 5788999999999999998766655 68899999999999976 5555432 34689999999999
Q ss_pred ccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchH
Q 035647 851 LYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILK 906 (938)
Q Consensus 851 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 906 (938)
|. +..++ ..+..+++|+.|++++|. +..+| +..+++|+.|++++||--.
T Consensus 311 N~-l~~i~---~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 311 NH-LLHVE---RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SC-CCCCG---GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CC-CCccC---cccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCCCC
Confidence 84 45553 346689999999999985 66666 6678999999999997543
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=5.7e-22 Score=224.89 Aligned_cols=333 Identities=17% Similarity=0.122 Sum_probs=231.7
Q ss_pred cCceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEe
Q 035647 541 QEELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIE 615 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~ 615 (938)
..+++++++.++.+..+| .+..+++|++|++++|. ...+| ++.+++|++|+ +..+| ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~---l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN---ITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC---CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc---CCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 378999999999988776 68899999999999973 23344 88999999998 55665 88999999999
Q ss_pred ecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEc
Q 035647 616 IEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIR 695 (938)
Q Consensus 616 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 695 (938)
+++|. +..+| ++.+++|++|++++|.+..+| ++.+++|+.|++..+...+.. .+..++.|. .+.+.
T Consensus 113 L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~----~L~ls 178 (457)
T 3bz5_A 113 CDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-----DVTPQTQLT----TLDCS 178 (457)
T ss_dssp CCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-----CCTTCTTCC----EEECC
T ss_pred CCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-----ccccCCcCC----EEECC
Confidence 99998 88886 899999999999999988875 888999999988776443311 233333443 33333
Q ss_pred CCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchh
Q 035647 696 GLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWV 775 (938)
Q Consensus 696 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~ 775 (938)
.. .+..+ .+..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+ +| +
T Consensus 179 ~n-~l~~l------~l~~l~~L~~L~l~~N~l~~~-------------------~l~~l~~L~~L~Ls~N~l~~-ip--~ 229 (457)
T 3bz5_A 179 FN-KITEL------DVSQNKLLNRLNCDTNNITKL-------------------DLNQNIQLTFLDCSSNKLTE-ID--V 229 (457)
T ss_dssp SS-CCCCC------CCTTCTTCCEEECCSSCCSCC-------------------CCTTCTTCSEEECCSSCCSC-CC--C
T ss_pred CC-cccee------ccccCCCCCEEECcCCcCCee-------------------ccccCCCCCEEECcCCcccc-cC--c
Confidence 21 11121 266788999999999988741 26678999999999999988 87 7
Q ss_pred hhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccc
Q 035647 776 VLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWE 855 (938)
Q Consensus 776 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 855 (938)
..+++|+.|++++|.....+ ++.+++|+.|++..+. ++.+.-. .+...+..+ ...+++|+.|++++|..++
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~-L~~L~l~----~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD-LLEIDLT----HNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCC-CSCCCCT----TCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred cccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCC-CCEEECC----CCccCCccc--ccccccCCEEECCCCcccc
Confidence 78999999999999755433 4556666666555432 3322210 111111111 3478999999999998776
Q ss_pred cccccc-----cccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCc------ccccCcC
Q 035647 856 EWEIEK-----EDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDW------AKIFHIP 924 (938)
Q Consensus 856 ~~~~~~-----~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~------~~i~~i~ 924 (938)
.++... -.+..+++|+.|++++| .++.+| +.++++|+.|++++|.--.-.......... .....+|
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~ 377 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMP 377 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECC
T ss_pred eeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecC
Confidence 665311 12557789999999888 477675 788999999999988421000000000000 2234567
Q ss_pred ceeeccccccCC
Q 035647 925 NIQINGHNVQGG 936 (938)
Q Consensus 925 ~i~i~~~~~~~~ 936 (938)
.+.+++|.++|.
T Consensus 378 ~l~l~~N~l~g~ 389 (457)
T 3bz5_A 378 KETLTNNSLTIA 389 (457)
T ss_dssp CBCCBTTBEEEE
T ss_pred ccccccCcEEEE
Confidence 777778877763
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=229.27 Aligned_cols=312 Identities=15% Similarity=0.085 Sum_probs=229.6
Q ss_pred EEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEeecC
Q 035647 545 RHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIEIEE 618 (938)
Q Consensus 545 r~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~L~~ 618 (938)
+.+...++.+..+|..+. ++++.|++++| ......+..|.++++|++|+ +..+ |..+.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKN--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCC--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 345556666777777653 58999999987 44444567899999999998 4444 67889999999999999
Q ss_pred CCCCcccchh-hhcccCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcC
Q 035647 619 CSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRG 696 (938)
Q Consensus 619 ~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 696 (938)
|. +..+|.. ++++++|++|++++|.+..++ ..+..+++|++|++..+....
T Consensus 90 n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------- 142 (477)
T 2id5_A 90 NR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-------------------------- 142 (477)
T ss_dssp SC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE--------------------------
T ss_pred Cc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce--------------------------
Confidence 98 8888765 688999999999999977664 468889999988765543221
Q ss_pred CCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhh
Q 035647 697 LGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVV 776 (938)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~ 776 (938)
.....+..+++|+.|+++.|.+... ....+..+++|+.|++++|.+.+..+..+.
T Consensus 143 ---------~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 143 ---------ISHRAFSGLNSLEQLTLEKCNLTSI----------------PTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp ---------ECTTSSTTCTTCCEEEEESCCCSSC----------------CHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred ---------eChhhccCCCCCCEEECCCCcCccc----------------ChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 0112355677899999999887641 234577789999999999998874455677
Q ss_pred hccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccc
Q 035647 777 LLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWE 855 (938)
Q Consensus 777 ~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 855 (938)
.+++|+.|++++|.....++ ......+|+.|++++|. ++.++.. .+..+++|+.|++++|. +.
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--------------~~~~l~~L~~L~Ls~n~-l~ 261 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYL--------------AVRHLVYLRFLNLSYNP-IS 261 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHH--------------HHTTCTTCCEEECCSSC-CC
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHH--------------HhcCccccCeeECCCCc-CC
Confidence 89999999999988666554 45556689999999875 5544432 24578999999999884 44
Q ss_pred cccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 856 EWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 856 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
.++ +..+..+++|+.|++++|......|..+.++++|+.|++++|. +.......+..+.++..+.+++|.+.+
T Consensus 262 ~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 262 TIE--GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-----LTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEC--TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-----CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccC--hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-----CceeCHhHcCCCcccCEEEccCCCccC
Confidence 443 3346788999999999986444457788889999999999993 222222334566778888888888764
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=7.4e-22 Score=217.06 Aligned_cols=276 Identities=20% Similarity=0.178 Sum_probs=212.7
Q ss_pred ccCceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEE
Q 035647 540 CQEELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTI 614 (938)
Q Consensus 540 ~~~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L 614 (938)
..++++++++.++.+..++. +..+++|++|++++|.. ..++ .+..+++|++|+ +..+|. +..+++|++|
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i---~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI---TDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC---CCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcc---cCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 35789999999999888776 89999999999999732 2333 589999999998 566666 8999999999
Q ss_pred eecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEE
Q 035647 615 EIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLII 694 (938)
Q Consensus 615 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 694 (938)
++++|..+..++. +..+++|++|++++|.+..++. +..+++|++|++..+.... ...+..++.|. .+.+
T Consensus 138 ~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~----~L~l 206 (347)
T 4fmz_A 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-----ISPLASLTSLH----YFTA 206 (347)
T ss_dssp ECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC-----CGGGGGCTTCC----EEEC
T ss_pred ECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc-----cccccCCCccc----eeec
Confidence 9999986666665 9999999999999999888776 8899999999988776554 11233333333 3333
Q ss_pred cCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCch
Q 035647 695 RGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSW 774 (938)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~ 774 (938)
... .+... ..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.. + ..
T Consensus 207 ~~n-~l~~~-----~~~~~~~~L~~L~l~~n~l~~-----------------~~-~~~~l~~L~~L~l~~n~l~~-~-~~ 260 (347)
T 4fmz_A 207 YVN-QITDI-----TPVANMTRLNSLKIGNNKITD-----------------LS-PLANLSQLTWLEIGTNQISD-I-NA 260 (347)
T ss_dssp CSS-CCCCC-----GGGGGCTTCCEEECCSSCCCC-----------------CG-GGTTCTTCCEEECCSSCCCC-C-GG
T ss_pred ccC-CCCCC-----chhhcCCcCCEEEccCCccCC-----------------Cc-chhcCCCCCEEECCCCccCC-C-hh
Confidence 332 11111 126778899999999998874 11 27788999999999999887 5 45
Q ss_pred hhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcccc
Q 035647 775 VVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEW 854 (938)
Q Consensus 775 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 854 (938)
+..+++|+.|++++|...+ ++.+..+++|+.|++++|. +...+. ..+..+++|++|++++|+ +
T Consensus 261 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~--------------~~l~~l~~L~~L~L~~n~-l 323 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQ-LGNEDM--------------EVIGGLTNLTTLFLSQNH-I 323 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCGGGH--------------HHHHTCTTCSEEECCSSS-C
T ss_pred HhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCc-CCCcCh--------------hHhhccccCCEEEccCCc-c
Confidence 7899999999999996444 5778899999999999986 333221 224579999999999995 4
Q ss_pred ccccccccccccCCcccEEeecCCc
Q 035647 855 EEWEIEKEDIAVMPQLISLELGSCS 879 (938)
Q Consensus 855 ~~~~~~~~~~~~l~~L~~L~l~~c~ 879 (938)
..++. +..+++|+.|++++|+
T Consensus 324 ~~~~~----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 324 TDIRP----LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCGG----GGGCTTCSEESSSCC-
T ss_pred ccccC----hhhhhccceeehhhhc
Confidence 54432 5689999999999996
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=6.7e-22 Score=238.36 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=33.5
Q ss_pred cccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeecccccc
Q 035647 864 IAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQ 934 (938)
Q Consensus 864 ~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~ 934 (938)
+..+++|+.|++++|.....+| ..+.++++|+.|++++|. +....+..+..++.+..+.+.+|.+.
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-----YLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-----EEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-----cceeChhhhhcCcccccchhcccccc
Confidence 3445555555555554333343 344455555555555553 22223334445556666666666654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.7e-21 Score=221.29 Aligned_cols=299 Identities=17% Similarity=0.230 Sum_probs=196.2
Q ss_pred cCceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEe
Q 035647 541 QEELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIE 615 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~ 615 (938)
..+++++++.++.+..++. +.++++|++|++++|. . ..++. ++++++|++|+ +..+|. +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~--l-~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ--I-ADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--C-CCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCc--c-ccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEE
Confidence 4678888888888777666 7788888888888762 2 22333 77888888887 555554 77888888888
Q ss_pred ecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEc
Q 035647 616 IEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIR 695 (938)
Q Consensus 616 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 695 (938)
+++|. +..+|. ++.+++|++|+++ +.+..+++ ++++++|+.|++..+.... ...+..++.|. .+.+.
T Consensus 141 l~~n~-l~~~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~----~L~l~ 207 (466)
T 1o6v_A 141 LSSNT-ISDISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD-----ISVLAKLTNLE----SLIAT 207 (466)
T ss_dssp EEEEE-ECCCGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC-----CGGGGGCTTCS----EEECC
T ss_pred CCCCc-cCCChh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC-----ChhhccCCCCC----EEEec
Confidence 88877 666654 6666666666664 23333332 5566666666655544332 11122222222 22222
Q ss_pred CCCCCCChhh-----------------hhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcc
Q 035647 696 GLGNVTSIDE-----------------AKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIE 758 (938)
Q Consensus 696 ~~~~~~~~~~-----------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 758 (938)
+.. +..... .....+..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 208 ~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~-~~~~l~~L~ 268 (466)
T 1o6v_A 208 NNQ-ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-----------------LA-PLSGLTKLT 268 (466)
T ss_dssp SSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-----------------CG-GGTTCTTCS
T ss_pred CCc-ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-----------------ch-hhhcCCCCC
Confidence 211 000000 000123344455555555554432 11 267789999
Q ss_pred eEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccc
Q 035647 759 SLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIV 838 (938)
Q Consensus 759 ~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 838 (938)
.|++++|.+.+ +|. +..+++|+.|++++|.... ++.++.+++|+.|++++|. +..++. +.
T Consensus 269 ~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~----------------~~ 328 (466)
T 1o6v_A 269 ELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNN-ISDISP----------------VS 328 (466)
T ss_dssp EEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSC-CSCCGG----------------GG
T ss_pred EEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCc-CCCchh----------------hc
Confidence 99999999988 666 7889999999999997544 4458899999999999975 333221 45
Q ss_pred cCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcc
Q 035647 839 AFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 839 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 904 (938)
.+++|++|++++| .+..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++|+-
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred cCccCCEeECCCC-ccCCch----hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcc
Confidence 8999999999998 455542 36789999999999996 555544 78899999999999953
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=2.3e-21 Score=219.96 Aligned_cols=307 Identities=15% Similarity=0.095 Sum_probs=221.2
Q ss_pred CcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeecCCCCCcccchhhhc
Q 035647 557 LPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIEECSNLRRLPQRIGK 631 (938)
Q Consensus 557 ~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 631 (938)
.+..+.++++|++|++++|. ...+| .++.+++|++|+ +..+| ++.+++|++|++++|. +..+| +++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~---l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~ 104 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSS---ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTP 104 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSC---CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTT
T ss_pred cccChhHcCCCCEEEccCCC---cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCC
Confidence 34567789999999999973 23345 689999999998 66665 8999999999999998 88886 899
Q ss_pred ccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccC
Q 035647 632 LVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNL 711 (938)
Q Consensus 632 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 711 (938)
+++|++|++++|.+..+| ++.+++|++|++..+..... .+..++.|. .+.+......... .+
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l------~l~~l~~L~----~L~l~~n~~~~~~------~~ 166 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI------DVSHNTQLT----ELDCHLNKKITKL------DV 166 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC------CCTTCTTCC----EEECTTCSCCCCC------CC
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee------ccccCCcCC----EEECCCCCccccc------cc
Confidence 999999999999998886 89999999999887766542 133333333 3444433222221 36
Q ss_pred ccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCC
Q 035647 712 DKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNN 791 (938)
Q Consensus 712 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 791 (938)
..+++|+.|++++|.+++ ++ +..+++|+.|++++|.+.+ ++ +..+++|+.|++++|..
T Consensus 167 ~~l~~L~~L~ls~n~l~~-----------------l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-----------------LD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-----------------CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred ccCCcCCEEECCCCccce-----------------ec--cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcc
Confidence 678899999999998874 11 6678899999999999988 54 78899999999999976
Q ss_pred CCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCccc
Q 035647 792 CEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLI 871 (938)
Q Consensus 792 ~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~ 871 (938)
.. +| ++.+++|+.|++++|. ++.++.... .+ ...-.....+|+.|++++|..+..++ .+.+++|+
T Consensus 225 ~~-ip-~~~l~~L~~L~l~~N~-l~~~~~~~l--~~-----L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~ 289 (457)
T 3bz5_A 225 TE-ID-VTPLTQLTYFDCSVNP-LTELDVSTL--SK-----LTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIK 289 (457)
T ss_dssp SC-CC-CTTCTTCSEEECCSSC-CSCCCCTTC--TT-----CCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCC
T ss_pred cc-cC-ccccCCCCEEEeeCCc-CCCcCHHHC--CC-----CCEEeccCCCCCEEECCCCccCCccc-----ccccccCC
Confidence 55 55 8899999999999875 444431100 00 00000012255666777776555554 34789999
Q ss_pred EEeecCCccccCCCc--------CCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 872 SLELGSCSKLKSLPV--------DLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 872 ~L~l~~c~~l~~lp~--------~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
.|++++|..++.+|. .+.++++|+.|++++|. +.+ -++...+++..+.+++|.|+|
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-----l~~---l~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-----LTE---LDVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-----CSC---CCCTTCTTCSEEECCSSCCCB
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-----ccc---cccccCCcCcEEECCCCCCCC
Confidence 999999987766653 24455667777777662 222 135566777788888888875
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=6.2e-21 Score=234.46 Aligned_cols=343 Identities=15% Similarity=0.136 Sum_probs=213.4
Q ss_pred EEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCC------Cc-chhccCCCcccEEeec
Q 035647 545 RHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTE------EL-PETCCELCNLQTIEIE 617 (938)
Q Consensus 545 r~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~------~l-p~~i~~L~~L~~L~L~ 617 (938)
+.++.+++.+..+|. -.++|+.|+|++| ......|..|.++++|++|++. .+ |..+.+|++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 456666777777886 4579999999998 4455567889999999999943 34 7789999999999999
Q ss_pred CCCCCccc-chhhhcccCCCeEEeCCccccc-cCcc--CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEE
Q 035647 618 ECSNLRRL-PQRIGKLVNLRHLIFVDVYLDY-MPKG--IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLI 693 (938)
Q Consensus 618 ~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~ 693 (938)
+|. +..+ |..++++++|++|++++|.+.. +|.. ++++++|++|++..|......+ ...+.++++|. .+.
T Consensus 82 ~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~----~L~ 154 (844)
T 3j0a_A 82 SSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--HPSFGKLNSLK----SID 154 (844)
T ss_dssp TCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--CGGGGTCSSCC----EEE
T ss_pred CCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--chhHhhCCCCC----EEE
Confidence 999 6654 7889999999999999999765 5655 8999999999999887655221 12234444444 333
Q ss_pred EcCCCCCCChhhhhhccCccc--cccCceEEEecCCCCCCcc--------------ccccccccccHH----HH------
Q 035647 694 IRGLGNVTSIDEAKTTNLDKK--KNLVHLELRFNKEKDDGAG--------------EAMNLENEVNHE----AI------ 747 (938)
Q Consensus 694 i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~----~~------ 747 (938)
+.+.. +. ......+..+ .+|+.|+++.|.+.+..+. ..+.+..+.... .+
T Consensus 155 Ls~N~-i~---~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 155 FSSNQ-IF---LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EESSC-CC---CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CCCCc-CC---eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 43311 11 1112223333 5677777777766542211 111111110000 00
Q ss_pred --------------------------hhhcCC--CCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CC
Q 035647 748 --------------------------SEALQA--PPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SL 798 (938)
Q Consensus 748 --------------------------~~~l~~--~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l 798 (938)
...+.. +++|+.|++++|.+.+..|..+..+++|+.|+|++|......| .+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 011111 2567777777776666445556667777777777776554444 46
Q ss_pred CCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCC
Q 035647 799 GKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSC 878 (938)
Q Consensus 799 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 878 (938)
+.+++|++|+|++|. +..+ .+..+..+++|+.|++++| .+..++ +..+..+++|+.|++++|
T Consensus 311 ~~l~~L~~L~Ls~N~-l~~~--------------~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNL-LGEL--------------YSSNFYGLPKVAYIDLQKN-HIAIIQ--DQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp TTCSSCCEEEEESCC-CSCC--------------CSCSCSSCTTCCEEECCSC-CCCCCC--SSCSCSCCCCCEEEEETC
T ss_pred cCCCCCCEEECCCCC-CCcc--------------CHHHhcCCCCCCEEECCCC-CCCccC--hhhhcCCCCCCEEECCCC
Confidence 667777777776654 2222 2233456777777777776 344443 223556777888888777
Q ss_pred ccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 879 SKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 879 ~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
. ++.++. +++|+.|++++|..- ..+. ....+..+.+++|.+++
T Consensus 373 ~-l~~i~~----~~~L~~L~l~~N~l~------~l~~---~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 373 A-LTTIHF----IPSIPDIFLSGNKLV------TLPK---INLTANLIHLSENRLEN 415 (844)
T ss_dssp C-SCCCSS----CCSCSEEEEESCCCC------CCCC---CCTTCCEEECCSCCCCS
T ss_pred C-CCcccC----CCCcchhccCCCCcc------cccc---cccccceeecccCcccc
Confidence 3 555543 667777777777321 1111 12345567777777765
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2.3e-21 Score=227.59 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=97.2
Q ss_pred EEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcc-hhccCCCcccEEeecCCC
Q 035647 547 SILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELP-ETCCELCNLQTIEIEECS 620 (938)
Q Consensus 547 l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp-~~i~~L~~L~~L~L~~~~ 620 (938)
.+...+.+..+|..+. ++|++|++++| ......|..|.++++|++|+ +..+| ..++++++|++|++++|.
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFN--KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSS--CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccccccccCC--CCccEEECcCC--ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 4555667777887664 79999999998 44455578899999999998 45555 679999999999999998
Q ss_pred CCcccchh-hhcccCCCeEEeCCccccc--cCccCCCCCCCCcCCceEecC
Q 035647 621 NLRRLPQR-IGKLVNLRHLIFVDVYLDY--MPKGIERLTCLRTLSEFVVSG 668 (938)
Q Consensus 621 ~l~~lp~~-i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~~~~~ 668 (938)
+..+|.. ++++++|++|++++|.+.. +|..++++++|++|++..+..
T Consensus 86 -l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 86 -LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp -CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred -cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence 7777665 9999999999999999874 467899999999999988863
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2e-21 Score=229.45 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=214.0
Q ss_pred cccCceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchh-ccCCCcc
Q 035647 539 TCQEELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPET-CCELCNL 611 (938)
Q Consensus 539 ~~~~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~-i~~L~~L 611 (938)
....+++.+++.+|.+..++. .+..+++|++|++++| ......|..|+++++|++|+ +..+|.. ++++++|
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC--cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 345789999999999887654 7899999999999998 45555667789999999998 6778876 5899999
Q ss_pred cEEeecCCCCCcccc-hhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCC
Q 035647 612 QTIEIEECSNLRRLP-QRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRG 690 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 690 (938)
++|+|++|. +..+| ..++.+++|++|++++|.+..+| ++.+++|+.|++..+.... +.....|.
T Consensus 150 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~--------l~~~~~L~---- 214 (597)
T 3oja_B 150 TTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST--------LAIPIAVE---- 214 (597)
T ss_dssp CEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE--------EECCTTCS----
T ss_pred CEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc--------ccCCchhh----
Confidence 999999998 66655 46999999999999999988875 5678889988876654432 11112222
Q ss_pred eEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC
Q 035647 691 SLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA 770 (938)
Q Consensus 691 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 770 (938)
.+.+.+.. +..+ .. ....+|+.|++++|.+.+ +..+..+++|+.|+|++|.+.+.
T Consensus 215 ~L~ls~n~-l~~~----~~--~~~~~L~~L~L~~n~l~~------------------~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 215 ELDASHNS-INVV----RG--PVNVELTILKLQHNNLTD------------------TAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp EEECCSSC-CCEE----EC--SCCSCCCEEECCSSCCCC------------------CGGGGGCTTCSEEECCSSCCCEE
T ss_pred eeeccCCc-cccc----cc--ccCCCCCEEECCCCCCCC------------------ChhhccCCCCCEEECCCCccCCC
Confidence 22222211 1111 11 123589999999998874 24577789999999999999986
Q ss_pred CCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccC
Q 035647 771 LPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRG 850 (938)
Q Consensus 771 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 850 (938)
.|..+..+++|+.|+|++|.....++.++.+++|+.|+|++|. +..+|.. +..+++|+.|++++
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~---------------~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN---------------QPQFDRLENLYLDH 333 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG---------------HHHHTTCSEEECCS
T ss_pred CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc---------------cccCCCCCEEECCC
Confidence 6888999999999999999876655567789999999999976 5455433 45789999999999
Q ss_pred ccccccccccccccccCCcccEEeecCCcc
Q 035647 851 LYEWEEWEIEKEDIAVMPQLISLELGSCSK 880 (938)
Q Consensus 851 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 880 (938)
|. +..++ +..+++|+.|++++|+.
T Consensus 334 N~-l~~~~-----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 334 NS-IVTLK-----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SC-CCCCC-----CCTTCCCSEEECCSSCE
T ss_pred CC-CCCcC-----hhhcCCCCEEEeeCCCC
Confidence 84 44443 55899999999999974
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.7e-21 Score=209.71 Aligned_cols=226 Identities=23% Similarity=0.300 Sum_probs=145.5
Q ss_pred CcccccC-----CCCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceE
Q 035647 591 TCLRALR-----TEELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFV 665 (938)
Q Consensus 591 ~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~ 665 (938)
.++++|+ +..+|..+.++++|++|+|++|. +..+|..++++++|++|++++|.+..+|..++++++|++|++..
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 4555555 55666666667777777777666 55666666777777777777776666666666666666666655
Q ss_pred ecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHH
Q 035647 666 VSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHE 745 (938)
Q Consensus 666 ~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 745 (938)
|......+..... .
T Consensus 160 n~~~~~~p~~~~~------------------------------------------------------------------~ 173 (328)
T 4fcg_A 160 CPELTELPEPLAS------------------------------------------------------------------T 173 (328)
T ss_dssp ETTCCCCCSCSEE------------------------------------------------------------------E
T ss_pred CCCccccChhHhh------------------------------------------------------------------c
Confidence 5433211100000 0
Q ss_pred HHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccC
Q 035647 746 AISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGI 825 (938)
Q Consensus 746 ~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 825 (938)
.+...+..+++|+.|++++|.+.. +|.++..+++|+.|+|++|.....++.++.+++|++|++++|.....+|.
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~----- 247 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP----- 247 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC-----
T ss_pred cchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH-----
Confidence 001123445667777777776664 77777777777777777776555555666777777777777654433332
Q ss_pred CCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCC
Q 035647 826 ENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 826 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 902 (938)
.+..+++|++|++++|.....++ ..+..+++|+.|+|++|+.++.+|..+.++++|+.+++..+
T Consensus 248 ----------~~~~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 248 ----------IFGGRAPLKRLILKDCSNLLTLP---LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ----------CTTCCCCCCEEECTTCTTCCBCC---TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ----------HhcCCCCCCEEECCCCCchhhcc---hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 24567778888888776665553 33667888888888888888888888888888888887754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.9e-21 Score=215.85 Aligned_cols=278 Identities=15% Similarity=0.136 Sum_probs=213.3
Q ss_pred cccCceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchh-ccCCCcc
Q 035647 539 TCQEELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPET-CCELCNL 611 (938)
Q Consensus 539 ~~~~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~-i~~L~~L 611 (938)
...++++.+++.++.+..++. .+..+++|++|++++| ......|..|+++++|++|+ +..+|.. +.++++|
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCC--CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 445789999999998887654 7889999999999997 44455577799999999998 6788876 5899999
Q ss_pred cEEeecCCCCCcccc-hhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCC
Q 035647 612 QTIEIEECSNLRRLP-QRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRG 690 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 690 (938)
++|++++|. +..++ ..++.+++|++|++++|.+..++ ++.+++|+.|++..+.... +.....|.
T Consensus 144 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~--------~~~~~~L~---- 208 (390)
T 3o6n_A 144 TTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST--------LAIPIAVE---- 208 (390)
T ss_dssp CEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE--------EECCSSCS----
T ss_pred cEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc--------cCCCCcce----
Confidence 999999998 66665 45899999999999999988774 6678889988876654332 11112222
Q ss_pred eEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC
Q 035647 691 SLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA 770 (938)
Q Consensus 691 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 770 (938)
.+.+.+. .+... ......+|+.|++++|.+.+ ...+..+++|+.|++++|.+.+.
T Consensus 209 ~L~l~~n-~l~~~------~~~~~~~L~~L~l~~n~l~~------------------~~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 209 ELDASHN-SINVV------RGPVNVELTILKLQHNNLTD------------------TAWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp EEECCSS-CCCEE------ECCCCSSCCEEECCSSCCCC------------------CGGGGGCTTCSEEECCSSCCCEE
T ss_pred EEECCCC-eeeec------cccccccccEEECCCCCCcc------------------cHHHcCCCCccEEECCCCcCCCc
Confidence 2222221 11111 11234689999999998874 13567789999999999999885
Q ss_pred CCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccC
Q 035647 771 LPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRG 850 (938)
Q Consensus 771 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 850 (938)
.|..+..+++|+.|+|++|...........+++|++|++++|. +..+|.. +..+++|++|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------------~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN---------------QPQFDRLENLYLDH 327 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG---------------HHHHTTCSEEECCS
T ss_pred ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc---------------ccccCcCCEEECCC
Confidence 6888999999999999999766655567789999999999985 5555433 34789999999999
Q ss_pred ccccccccccccccccCCcccEEeecCCcc
Q 035647 851 LYEWEEWEIEKEDIAVMPQLISLELGSCSK 880 (938)
Q Consensus 851 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 880 (938)
|. +..++ +..+++|+.|++++|+.
T Consensus 328 N~-i~~~~-----~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 328 NS-IVTLK-----LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SC-CCCCC-----CCTTCCCSEEECCSSCE
T ss_pred Cc-cceeC-----chhhccCCEEEcCCCCc
Confidence 84 45443 45899999999999864
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=231.76 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=96.1
Q ss_pred EEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcc-hhccCCCcccEEeecCC
Q 035647 546 HSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELP-ETCCELCNLQTIEIEEC 619 (938)
Q Consensus 546 ~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp-~~i~~L~~L~~L~L~~~ 619 (938)
.+.-.+..+..+|..+. ++++.|++++| ......+..|.++++|++|+ +..+| ..+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EEECCSSCCSSCCSSSC--SSCCEEECCSC--CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEEeCCCCccccCCCcc--ccccEEEccCC--ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 34444455666776553 57999999997 34444566899999999998 45554 56899999999999999
Q ss_pred CCCcccc-hhhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCC
Q 035647 620 SNLRRLP-QRIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 620 ~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~ 670 (938)
. +..+| ..++++++|++|++++|.+..+|. .++++++|++|++..+....
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 87 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (570)
T ss_dssp C-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC
T ss_pred c-CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccce
Confidence 8 77765 579999999999999999998886 59999999999998876654
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.8e-21 Score=225.81 Aligned_cols=120 Identities=19% Similarity=0.128 Sum_probs=102.6
Q ss_pred eEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEeec
Q 035647 544 LRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIEIE 617 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~L~ 617 (938)
.+++++.++.+..+|..+. ++|+.|++++| ......|..|+++++|++|+ +..+ |..+.++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3789999999998888664 89999999998 44455567899999999998 5555 5679999999999999
Q ss_pred CCCCCcccchhhhcccCCCeEEeCCccccccC--ccCCCCCCCCcCCceEecCCC
Q 035647 618 ECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMP--KGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 618 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~~~~ 670 (938)
+|. +..+|.. .+++|++|++++|.+..+| ..|+++++|++|++..+....
T Consensus 109 ~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 109 HNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 998 8899987 8999999999999988765 689999999999998876543
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=4e-21 Score=219.80 Aligned_cols=318 Identities=14% Similarity=0.106 Sum_probs=217.5
Q ss_pred cccCceEEEEEEcCCCCC-C-cccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCC-----C-cchh--ccCC
Q 035647 539 TCQEELRHSILFLGYNAS-L-PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTE-----E-LPET--CCEL 608 (938)
Q Consensus 539 ~~~~~lr~l~l~~~~~~~-~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~-----~-lp~~--i~~L 608 (938)
....+++++++.++.+.. + +..+..+++|++|++++| ......|..|+++++|++|++. . .|.. +.++
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN--QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC--TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCC--ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence 345789999999998753 3 567889999999999997 4455568899999999999933 2 3444 8899
Q ss_pred CcccEEeecCCCCCccc-chh-hhcccCCCeEEeCCccccccC-ccCCCC--CCCCcCCceEecCCCCCCCCcc-----C
Q 035647 609 CNLQTIEIEECSNLRRL-PQR-IGKLVNLRHLIFVDVYLDYMP-KGIERL--TCLRTLSEFVVSGRGKYGNKAC-----N 678 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~l~~lp-~~i~~L--~~L~~L~~~~~~~~~~~~~~~~-----~ 678 (938)
++|++|++++|. +..+ |.. ++++++|++|++++|.+..++ ..+..+ .+|+.|++..+......+.... .
T Consensus 129 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 999999999998 6665 555 899999999999999977654 456655 5677777666555442211110 1
Q ss_pred ccccccccccCCeEEEcCCCCCCChhhhhhccC---ccccccCceEEEecCCCCCC--------------------cccc
Q 035647 679 LEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNL---DKKKNLVHLELRFNKEKDDG--------------------AGEA 735 (938)
Q Consensus 679 l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~--------------------~~~~ 735 (938)
+..++.|. .+.+.+.. +....+..+ ....+|+.|+++.|...+.. ....
T Consensus 208 ~~~~~~L~----~L~Ls~n~----l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 208 PFKNTSIT----TLDLSGNG----FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp TTTTCEEE----EEECTTSC----CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred ccccceee----eEecCCCc----ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 11222232 33333221 111111111 12356777777665432210 0111
Q ss_pred ccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccC
Q 035647 736 MNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRS 814 (938)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~ 814 (938)
+.+..+......+..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|...+..+ .++.+++|++|+|++|.
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~- 358 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH- 358 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-
Confidence 1122222223345668889999999999999998567788999999999999998765554 57889999999999976
Q ss_pred ceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC
Q 035647 815 VKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP 885 (938)
Q Consensus 815 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 885 (938)
++.++. ..+..+++|++|++++| .+..++ +..+..+++|+.|++++|+.....|
T Consensus 359 l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 359 IRALGD--------------QSFLGLPNLKELALDTN-QLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEECT--------------TTTTTCTTCCEEECCSS-CCSCCC--TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccCh--------------hhccccccccEEECCCC-ccccCC--HhHhccCCcccEEEccCCCcccCCC
Confidence 444432 23568999999999998 455554 2335689999999999998655555
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.8e-21 Score=210.72 Aligned_cols=118 Identities=21% Similarity=0.164 Sum_probs=70.5
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEe
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIE 615 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~ 615 (938)
..++.+.+.++.+..+|..+. ++|+.|++++| ......|..|.++++|++|+ +..+ |..+.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 356777777777777776653 67888888876 23333344566666666665 3333 44566666666666
Q ss_pred ecCCCCCcccchhhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEe
Q 035647 616 IEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVV 666 (938)
Q Consensus 616 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~ 666 (938)
+++|. +..+|..+. ++|++|++++|.+..+|.. +..+++|++|++..+
T Consensus 109 L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 109 ISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 66665 555655443 5666666666665555543 555666666555443
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.3e-20 Score=202.41 Aligned_cols=226 Identities=22% Similarity=0.262 Sum_probs=184.6
Q ss_pred CCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCe
Q 035647 563 NAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRH 637 (938)
Q Consensus 563 ~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 637 (938)
..++++.|+++++ ....+|..++++++|++|+ +..+|..++++++|++|+|++|. +..+|..++++++|++
T Consensus 79 ~~~~l~~L~L~~n---~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSV---PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESS---CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCE
T ss_pred cccceeEEEccCC---CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCE
Confidence 4578999999996 3447888899999999998 77899999999999999999998 8899999999999999
Q ss_pred EEeCCcc-ccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccc
Q 035647 638 LIFVDVY-LDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKN 716 (938)
Q Consensus 638 L~l~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~ 716 (938)
|++++|. +..+|..++... ... .+..+++
T Consensus 155 L~L~~n~~~~~~p~~~~~~~-----------~~~---------------------------------------~~~~l~~ 184 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTD-----------ASG---------------------------------------EHQGLVN 184 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC------------CC---------------------------------------CEEESTT
T ss_pred EECCCCCCccccChhHhhcc-----------chh---------------------------------------hhccCCC
Confidence 9999987 677887665411 000 0123457
Q ss_pred cCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC
Q 035647 717 LVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP 796 (938)
Q Consensus 717 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 796 (938)
|+.|++++|.+.. ++..+..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|...+.+|
T Consensus 185 L~~L~L~~n~l~~-----------------lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 185 LQSLRLEWTGIRS-----------------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp CCEEEEEEECCCC-----------------CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred CCEEECcCCCcCc-----------------chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhH
Confidence 8888888887763 34557778899999999999987 88889999999999999998777666
Q ss_pred -CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEee
Q 035647 797 -SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLEL 875 (938)
Q Consensus 797 -~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 875 (938)
.++.+++|++|+|++|..+..+|.. +..+++|++|++++|+.++.+| ..+..+++|+.+++
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~---------------~~~l~~L~~L~L~~n~~~~~iP---~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLD---------------IHRLTQLEKLDLRGCVNLSRLP---SLIAQLPANCIILV 308 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTT---------------GGGCTTCCEEECTTCTTCCCCC---GGGGGSCTTCEEEC
T ss_pred HHhcCCCCCCEEECCCCCchhhcchh---------------hhcCCCCCEEeCCCCCchhhcc---HHHhhccCceEEeC
Confidence 5889999999999998766555543 4588999999999998777764 45778999999999
Q ss_pred cCC
Q 035647 876 GSC 878 (938)
Q Consensus 876 ~~c 878 (938)
..+
T Consensus 309 ~~~ 311 (328)
T 4fcg_A 309 PPH 311 (328)
T ss_dssp CGG
T ss_pred CHH
Confidence 765
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=9.7e-21 Score=206.38 Aligned_cols=290 Identities=15% Similarity=0.146 Sum_probs=142.3
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCC
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSN 621 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~ 621 (938)
.+++.+++.++.+..+|..+. ++|+.|++++|. .....+. .+.++++|++|++++|.
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~--i~~~~~~------------------~~~~l~~L~~L~L~~n~- 87 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK--ITEIKDG------------------DFKNLKNLHTLILINNK- 87 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC--CCCBCTT------------------TTTTCTTCCEEECCSSC-
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCc--CCEeChh------------------hhccCCCCCEEECCCCc-
Confidence 355666666666666665543 577777777752 2211122 35555566666666655
Q ss_pred Cccc-chhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCC
Q 035647 622 LRRL-PQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNV 700 (938)
Q Consensus 622 l~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~ 700 (938)
+..+ |..++++++|++|++++|.+..+|..+. ++|++|++..+....
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~------------------------------ 135 (330)
T 1xku_A 88 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITK------------------------------ 135 (330)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCB------------------------------
T ss_pred CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccc------------------------------
Confidence 4443 4555666666666666666555555443 455555443322111
Q ss_pred CChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccC
Q 035647 701 TSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNK 780 (938)
Q Consensus 701 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~ 780 (938)
.....+..+++|+.|+++.|.+.. ....+..+..+++|+.|++++|.+.. +|..+. ++
T Consensus 136 -----~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~ 193 (330)
T 1xku_A 136 -----VRKSVFNGLNQMIVVELGTNPLKS--------------SGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PS 193 (330)
T ss_dssp -----BCHHHHTTCTTCCEEECCSSCCCG--------------GGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TT
T ss_pred -----cCHhHhcCCccccEEECCCCcCCc--------------cCcChhhccCCCCcCEEECCCCcccc-CCcccc--cc
Confidence 001112334455555555554431 00112234445566666666666555 554432 56
Q ss_pred ccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccc
Q 035647 781 LKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEI 859 (938)
Q Consensus 781 L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 859 (938)
|++|++++|......+ .+..+++|+.|++++|. ++.++.. .+..+++|++|++++| .+..+
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--------------~~~~l~~L~~L~L~~N-~l~~l-- 255 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG--------------SLANTPHLRELHLNNN-KLVKV-- 255 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTT--------------TGGGSTTCCEEECCSS-CCSSC--
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChh--------------hccCCCCCCEEECCCC-cCccC--
Confidence 6666666665443332 45556666666666544 3333221 1335566666666665 23333
Q ss_pred cccccccCCcccEEeecCCccccCCCcC-CC------CCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccc
Q 035647 860 EKEDIAVMPQLISLELGSCSKLKSLPVD-LL------RSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGH 931 (938)
Q Consensus 860 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~ 931 (938)
+..+..+++|+.|++++|. ++.+|.. +. ..++|+.|++++||.... ...+..+....++..+++.+|
T Consensus 256 -p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~---~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 256 -PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW---EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG---GSCGGGGTTCCCGGGEEC---
T ss_pred -ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccccc---ccCccccccccceeEEEeccc
Confidence 2234556666666666653 4444421 11 135566666666653211 112233344455555555554
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=2.6e-20 Score=222.97 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=107.0
Q ss_pred cCceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcch-hccCCCcccE
Q 035647 541 QEELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPE-TCCELCNLQT 613 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~-~i~~L~~L~~ 613 (938)
...+++|++++|.+..+++ .+.++++|++|+|++| ......+..|++|++|++|+ +..+|. .|.+|++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N--~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC--cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 3689999999999988764 6899999999999997 34444466899999999998 667775 5899999999
Q ss_pred EeecCCCCCcccchh-hhcccCCCeEEeCCccccc--cCccCCCCCCCCcCCceEecCCC
Q 035647 614 IEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLDY--MPKGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 614 L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~ 670 (938)
|+|++|. +..+|.. ++++++|++|++++|.+.. +|..++.+++|++|++..+....
T Consensus 129 L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 129 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred EECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999998 8888764 8999999999999999764 46778999999999888776544
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=3e-20 Score=210.54 Aligned_cols=341 Identities=18% Similarity=0.154 Sum_probs=165.8
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcc-------------cccC-----CCCcch
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCL-------------RALR-----TEELPE 603 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~L-------------r~L~-----i~~lp~ 603 (938)
..++.+.++++.+..+|.+++++++|++|++++| ...+.+|..++++++| ++|+ +..+|.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWS--EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -----------------------CCHHHHHHHHH--HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCC--cccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 6789999999999889999999999999999987 5566788888887765 5555 444443
Q ss_pred hccCCCcccEEeecCCCCCcccchhhh----------------cc-cCCCeEEeCCccccccCccCCCCCCCCcCCceEe
Q 035647 604 TCCELCNLQTIEIEECSNLRRLPQRIG----------------KL-VNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVV 666 (938)
Q Consensus 604 ~i~~L~~L~~L~L~~~~~l~~lp~~i~----------------~L-~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 666 (938)
. .++|++|++++|. +..+|..+. .+ ++|++|++++|.+..+| .++++++|++|++..+
T Consensus 89 ~---~~~L~~L~l~~n~-l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 89 L---PPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp C---CTTCSEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred C---cCCCCEEEccCCc-CCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 1 2455555555554 444443211 11 46777777777766666 4777777777777665
Q ss_pred cCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCc----cccccccccc
Q 035647 667 SGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGA----GEAMNLENEV 742 (938)
Q Consensus 667 ~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~ 742 (938)
.... .+. .+..|+ .+.+.+. .+.. ...+..+++|+.|++++|.+.+.+. .+.+.+.++.
T Consensus 164 ~l~~-lp~---~~~~L~-------~L~L~~n-~l~~-----l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 164 SLKK-LPD---LPPSLE-------FIAAGNN-QLEE-----LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 226 (454)
T ss_dssp CCSC-CCC---CCTTCC-------EEECCSS-CCSS-----CCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC
T ss_pred cCcc-cCC---Cccccc-------EEECcCC-cCCc-----CccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCc
Confidence 5443 111 111222 2222221 1111 1246677788888888877764211 1112222221
Q ss_pred cHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcc-
Q 035647 743 NHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDE- 821 (938)
Q Consensus 743 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~- 821 (938)
.. .++ .+..+++|+.|++++|.+.+ +|.. +++|+.|++++|...+ +|.. +++|+.|++++|. ++.++..
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~-l~~l~~~~ 296 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENI-FSGLSELP 296 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSC-CSEESCCC
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCc-cCcccCcC
Confidence 11 222 25566667777777776665 5542 3567777777665433 3322 3667777777654 4443321
Q ss_pred --ccc---CCCCCCCCCCcccccC-CccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCcc
Q 035647 822 --FWG---IENHHSSSSSSSIVAF-PKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLK 895 (938)
Q Consensus 822 --~~~---~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 895 (938)
+.. ..+... .+..+ ++|++|++++| .+..++. .+++|+.|++++| .++.+|. .+++|+
T Consensus 297 ~~L~~L~l~~N~l~-----~i~~~~~~L~~L~Ls~N-~l~~lp~------~~~~L~~L~L~~N-~l~~lp~---~l~~L~ 360 (454)
T 1jl5_A 297 PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNN-KLIELPA------LPPRLERLIASFN-HLAEVPE---LPQNLK 360 (454)
T ss_dssp TTCCEEECCSSCCS-----EECCCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCCC---CCTTCC
T ss_pred CcCCEEECcCCcCC-----cccCCcCcCCEEECCCC-ccccccc------cCCcCCEEECCCC-ccccccc---hhhhcc
Confidence 100 011111 12233 47888888876 3444432 3688889999887 4777887 368889
Q ss_pred EEEEcCCcchHHhhccCCCCCcccc-------------cCcCceeeccccccC
Q 035647 896 MLEIYNCPILKERFKKDVGEDWAKI-------------FHIPNIQINGHNVQG 935 (938)
Q Consensus 896 ~L~l~~c~~l~~~~~~~~~~~~~~i-------------~~i~~i~i~~~~~~~ 935 (938)
.|++++|+-.. ....+..+..+ +++..+++++|.++|
T Consensus 361 ~L~L~~N~l~~---l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 361 QLHVEYNPLRE---FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp EEECCSSCCSS---CCCCCTTCCEEECCC------------------------
T ss_pred EEECCCCCCCc---CCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 99998884311 00233344444 567778888888876
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.4e-21 Score=208.94 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=56.8
Q ss_pred CceEEEEEEcCCCC---CCcccccCCCCceEEEEec-CCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeec
Q 035647 542 EELRHSILFLGYNA---SLPVCIYNAKKLRSLLIYS-SLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIE 617 (938)
Q Consensus 542 ~~lr~l~l~~~~~~---~~~~~~~~l~~Lr~L~l~~-~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~ 617 (938)
.+++++++.++.+. .+|..+.++++|++|++++ | .....+ |..++++++|++|+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n--~l~~~~------------------p~~l~~l~~L~~L~Ls 109 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--NLVGPI------------------PPAIAKLTQLHYLYIT 109 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET--TEESCC------------------CGGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC--cccccC------------------ChhHhcCCCCCEEECc
Confidence 46777777777766 3677777777777777774 4 223233 3444445555555555
Q ss_pred CCCCCcccchhhhcccCCCeEEeCCcccc-ccCccCCCCCCCCcCCc
Q 035647 618 ECSNLRRLPQRIGKLVNLRHLIFVDVYLD-YMPKGIERLTCLRTLSE 663 (938)
Q Consensus 618 ~~~~l~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~ 663 (938)
+|.....+|..++++++|++|++++|.+. .+|..++.+++|++|++
T Consensus 110 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 55522245555555555555555555544 34444444444444443
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.5e-20 Score=202.58 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=165.5
Q ss_pred cccCceEEEEEEc-CCCC-CCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCC-----C-CcchhccCCCc
Q 035647 539 TCQEELRHSILFL-GYNA-SLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRT-----E-ELPETCCELCN 610 (938)
Q Consensus 539 ~~~~~lr~l~l~~-~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i-----~-~lp~~i~~L~~ 610 (938)
....+++++++.+ +.+. .+|..+.++++|++|++++| .....+|..|.++++|++|++ . .+|..+.++++
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT--NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE--CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC--eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 4457899999994 6554 58889999999999999997 445567888888888888872 2 57777888888
Q ss_pred ccEEeecCCCCCcccchhhhccc-CCCeEEeCCcccc-ccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccccccc
Q 035647 611 LQTIEIEECSNLRRLPQRIGKLV-NLRHLIFVDVYLD-YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNL 688 (938)
Q Consensus 611 L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L 688 (938)
|++|++++|.....+|..+++++ +|++|++++|.+. .+|..+..++ |+.|++..+....
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~------------------ 211 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------------------ 211 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE------------------
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC------------------
Confidence 88888888873336888888887 8888888888865 6677777765 7766654432111
Q ss_pred CCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCC
Q 035647 689 RGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGK 768 (938)
Q Consensus 689 ~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 768 (938)
..+..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.+.
T Consensus 212 -----------------~~~~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 212 -----------------DASVLFGSDKNTQKIHLAKNSLAF-----------------DLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp -----------------CCGGGCCTTSCCSEEECCSSEECC-----------------BGGGCCCCTTCCEEECCSSCCE
T ss_pred -----------------cCCHHHhcCCCCCEEECCCCceee-----------------ecCcccccCCCCEEECcCCccc
Confidence 112345566788888888887753 1223566788888888888888
Q ss_pred CCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCc
Q 035647 769 TALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSV 815 (938)
Q Consensus 769 ~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l 815 (938)
+.+|.++..+++|+.|+|++|...+.+|..+.+++|+.|++.+|+.+
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 66888888888888888888887767777778888888888876633
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=2.1e-19 Score=195.87 Aligned_cols=268 Identities=17% Similarity=0.186 Sum_probs=188.6
Q ss_pred cCceEEEEEEcCCCCCCc-ccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEE
Q 035647 541 QEELRHSILFLGYNASLP-VCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTI 614 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L 614 (938)
..+++.+++.++.+..++ ..+.++++|++|++++| ......|..|+++++|++|+ +..+|..+. ++|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN--KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC--ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 368999999999988764 47899999999999997 44455588899999999998 677887765 899999
Q ss_pred eecCCCCCcccchh-hhcccCCCeEEeCCcccc---ccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCC
Q 035647 615 EIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLD---YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRG 690 (938)
Q Consensus 615 ~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 690 (938)
++++|. +..+|.. ++++++|++|++++|.+. ..|..+..+ +|+.|++..+.... +.
T Consensus 129 ~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--------------l~---- 188 (332)
T 2ft3_A 129 RIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--------------IP---- 188 (332)
T ss_dssp ECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--------------CC----
T ss_pred ECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--------------cC----
Confidence 999998 8887764 899999999999999875 345556666 78888765543322 00
Q ss_pred eEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC
Q 035647 691 SLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA 770 (938)
Q Consensus 691 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 770 (938)
..+ .++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+.
T Consensus 189 ------------------~~~--~~~L~~L~l~~n~i~~~----------------~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 189 ------------------KDL--PETLNELHLDHNKIQAI----------------ELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp ------------------SSS--CSSCSCCBCCSSCCCCC----------------CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred ------------------ccc--cCCCCEEECCCCcCCcc----------------CHHHhcCCCCCCEEECCCCcCCcC
Confidence 001 14678888888877641 224567788899999999988884
Q ss_pred CCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccC
Q 035647 771 LPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRG 850 (938)
Q Consensus 771 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 850 (938)
.|.++..+++|+.|+|++|.....++.++.+++|++|++++|. ++.++...+.... ....+++|+.|++.+
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~--------~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVG--------FGVKRAYYNGISLFN 303 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSS--------CCSSSCCBSEEECCS
T ss_pred ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccc--------cccccccccceEeec
Confidence 4557888899999999998766544567888888888888865 5555543221100 001255666777766
Q ss_pred ccccccccccccccccCCcccEEeecCC
Q 035647 851 LYEWEEWEIEKEDIAVMPQLISLELGSC 878 (938)
Q Consensus 851 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c 878 (938)
|+ +..+...+..+..+++|+.|++++|
T Consensus 304 N~-~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 304 NP-VPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SS-SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred Cc-ccccccCcccccccchhhhhhcccc
Confidence 64 2323333444556666666666655
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=2.8e-19 Score=194.81 Aligned_cols=268 Identities=15% Similarity=0.137 Sum_probs=142.4
Q ss_pred CceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEe
Q 035647 542 EELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIE 615 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~ 615 (938)
..++.+++.++.+..++. .+.++++|++|++++| ......|..|+.+++|++|+ +..+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN--KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC--cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence 689999999999988765 6889999999999987 33333355566666666655 444444433 4566666
Q ss_pred ecCCCCCcccch-hhhcccCCCeEEeCCcccc---ccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCe
Q 035647 616 IEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLD---YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGS 691 (938)
Q Consensus 616 L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~ 691 (938)
+++|. +..++. .++++++|++|++++|.+. ..|..+..+++|+.|++..+.... +
T Consensus 128 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------l--- 186 (330)
T 1xku_A 128 VHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-----------------I--- 186 (330)
T ss_dssp CCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----------------C---
T ss_pred CCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----------------C---
Confidence 66655 444433 3555666666666655543 223334555555555443322111 0
Q ss_pred EEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCC
Q 035647 692 LIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTAL 771 (938)
Q Consensus 692 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~l 771 (938)
+..+ .++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+..
T Consensus 187 ----------------~~~~--~~~L~~L~l~~n~l~~----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 187 ----------------PQGL--PPSLTELHLDGNKITK----------------VDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp ----------------CSSC--CTTCSEEECTTSCCCE----------------ECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred ----------------Cccc--cccCCEEECCCCcCCc----------------cCHHHhcCCCCCCEEECCCCcCceeC
Confidence 0000 1355666666555542 11234555666666666666666533
Q ss_pred CchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCc
Q 035647 772 PSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGL 851 (938)
Q Consensus 772 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 851 (938)
|.++..+++|+.|+|++|.....+..+..+++|++|++++|. ++.++...+... .....+++|+.|++.+|
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~--------~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP--------GYNTKKASYSGVSLFSN 303 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS--------SCCTTSCCCSEEECCSS
T ss_pred hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc--------ccccccccccceEeecC
Confidence 335566666666666666544333456666666666666654 444443222110 00112345555555555
Q ss_pred cccccccccccccccCCcccEEeecCC
Q 035647 852 YEWEEWEIEKEDIAVMPQLISLELGSC 878 (938)
Q Consensus 852 ~~l~~~~~~~~~~~~l~~L~~L~l~~c 878 (938)
+ +..+...+..+..+++|+.+++++|
T Consensus 304 ~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 304 P-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred c-ccccccCccccccccceeEEEeccc
Confidence 3 2223333333445555555555444
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.8e-18 Score=200.12 Aligned_cols=252 Identities=20% Similarity=0.192 Sum_probs=165.8
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEee
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEI 616 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L 616 (938)
..++.+++.++.+..+|..+. ++|+.|++++|. +..+|. .+++|++|+ ++.+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~---l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC---CSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC---CCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 347788888888888887665 788899888862 223443 344555554 444444 4556666666
Q ss_pred cCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcC
Q 035647 617 EECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRG 696 (938)
Q Consensus 617 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 696 (938)
++|. +..+|. .+++|++|++++|.+..+|..+ ++|++|++..|....
T Consensus 109 s~N~-l~~l~~---~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~-------------------------- 155 (622)
T 3g06_A 109 FSNP-LTHLPA---LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLAS-------------------------- 155 (622)
T ss_dssp CSCC-CCCCCC---CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSC--------------------------
T ss_pred cCCc-CCCCCC---CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCC--------------------------
Confidence 6655 555554 4555666666666655555432 445555444332211
Q ss_pred CCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhh
Q 035647 697 LGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVV 776 (938)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~ 776 (938)
+ + ....+|+.|++++|.+.. ++ ..+++|+.|++++|.+.+ +|..
T Consensus 156 ------l----~---~~~~~L~~L~L~~N~l~~-----------------l~---~~~~~L~~L~Ls~N~l~~-l~~~-- 199 (622)
T 3g06_A 156 ------L----P---ALPSELCKLWAYNNQLTS-----------------LP---MLPSGLQELSVSDNQLAS-LPTL-- 199 (622)
T ss_dssp ------C----C---CCCTTCCEEECCSSCCSC-----------------CC---CCCTTCCEEECCSSCCSC-CCCC--
T ss_pred ------c----C---CccCCCCEEECCCCCCCC-----------------Cc---ccCCCCcEEECCCCCCCC-CCCc--
Confidence 0 0 012467778888777763 11 345788999999988877 7763
Q ss_pred hccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcccccc
Q 035647 777 LLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEE 856 (938)
Q Consensus 777 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 856 (938)
+++|+.|++++|... .+|. .+++|+.|++++|. ++.+| ..+++|+.|++++| .+..
T Consensus 200 -~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp------------------~~l~~L~~L~Ls~N-~L~~ 255 (622)
T 3g06_A 200 -PSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLP------------------VLPSELKELMVSGN-RLTS 255 (622)
T ss_dssp -CTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCC------------------CCCTTCCEEECCSS-CCSC
T ss_pred -cchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc-cCcCC------------------CCCCcCcEEECCCC-CCCc
Confidence 478889999888644 3443 25788999988864 44443 25688999999987 5555
Q ss_pred ccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcc
Q 035647 857 WEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 857 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 904 (938)
++. .+++|+.|++++| .++.+|..+.++++|+.|++++|+-
T Consensus 256 lp~------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 256 LPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCC------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCc------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 542 5788999999888 5778888888899999999999864
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=3e-18 Score=194.13 Aligned_cols=320 Identities=17% Similarity=0.112 Sum_probs=183.4
Q ss_pred CCCCceEEEEecCCCcchhhhhhhhhccCcccccC------CCCcchhccCCCcc-------------cEEeecCCCCCc
Q 035647 563 NAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR------TEELPETCCELCNL-------------QTIEIEECSNLR 623 (938)
Q Consensus 563 ~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~------i~~lp~~i~~L~~L-------------~~L~L~~~~~l~ 623 (938)
..++|+.|.++++ . .+.+|..++++++|++|+ .+.+|.+++++.+| ++|++++|. ++
T Consensus 9 ~~~~L~~L~l~~n--~-l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~ 84 (454)
T 1jl5_A 9 SNTFLQEPLRHSS--N-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LS 84 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CS
T ss_pred ccccchhhhcccC--c-hhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cc
Confidence 4689999999986 3 388999999999999999 34789999998876 999999998 88
Q ss_pred ccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCCh
Q 035647 624 RLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSI 703 (938)
Q Consensus 624 ~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~ 703 (938)
.+|.. .++|++|++++|.+..+|..+ ++|++|++..+...... .+. ..|. .+.+... .+..
T Consensus 85 ~lp~~---~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~-----~~~--~~L~----~L~L~~n-~l~~- 145 (454)
T 1jl5_A 85 SLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALS-----DLP--PLLE----YLGVSNN-QLEK- 145 (454)
T ss_dssp CCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCC-----SCC--TTCC----EEECCSS-CCSS-
T ss_pred cCCCC---cCCCCEEEccCCcCCcccccc---CCCcEEECCCCccCccc-----CCC--CCCC----EEECcCC-CCCC-
Confidence 88872 479999999999988888643 67888887766544311 110 1222 2223221 1111
Q ss_pred hhhhhccCccccccCceEEEecCCCCCCc----cccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhcc
Q 035647 704 DEAKTTNLDKKKNLVHLELRFNKEKDDGA----GEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLN 779 (938)
Q Consensus 704 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~ 779 (938)
.+ .+..+++|++|++++|.+.+.+. .+.+.+..+.... ++ .+..+++|+.|++++|.+.+ +|... +
T Consensus 146 ---lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~ 215 (454)
T 1jl5_A 146 ---LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---L 215 (454)
T ss_dssp ---CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---T
T ss_pred ---Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---C
Confidence 11 46777788888888887765221 1222222222111 22 46778888888888888777 66532 5
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCccccc------CCCCCCCCCCcccccCCccceeeccCccc
Q 035647 780 KLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWG------IENHHSSSSSSSIVAFPKLKKLTLRGLYE 853 (938)
Q Consensus 780 ~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 853 (938)
+|+.|++++|... .+|.++.+++|++|++++|. ++.+|..... ..+...+ .+. .+++|++|++++|.
T Consensus 216 ~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~-l~~---~~~~L~~L~ls~N~- 288 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENI- 288 (454)
T ss_dssp TCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-
T ss_pred cccEEECcCCcCC-cccccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccc-cCc---ccCcCCEEECcCCc-
Confidence 7888888888544 56678888888888888765 4444432110 1111111 111 23566666666652
Q ss_pred cccccccccc-------------cccC-CcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCccc
Q 035647 854 WEEWEIEKED-------------IAVM-PQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAK 919 (938)
Q Consensus 854 l~~~~~~~~~-------------~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 919 (938)
+..++..+.. +..+ ++|+.|++++| .+..+|.. +++|+.|++++|. +. ..+. .
T Consensus 289 l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-----l~-~lp~---~ 355 (454)
T 1jl5_A 289 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-----LA-EVPE---L 355 (454)
T ss_dssp CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-----CS-CCCC---C
T ss_pred cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECCCCc-----cc-cccc---h
Confidence 3332211100 1123 47888888877 46667764 5788999998883 22 1222 3
Q ss_pred ccCcCceeeccccccC
Q 035647 920 IFHIPNIQINGHNVQG 935 (938)
Q Consensus 920 i~~i~~i~i~~~~~~~ 935 (938)
.+++..+.+++|.++|
T Consensus 356 l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CTTCCEEECCSSCCSS
T ss_pred hhhccEEECCCCCCCc
Confidence 5778888999999887
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=190.59 Aligned_cols=264 Identities=17% Similarity=0.141 Sum_probs=158.9
Q ss_pred EEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEeecCCC
Q 035647 547 SILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIEIEECS 620 (938)
Q Consensus 547 l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~L~~~~ 620 (938)
.+..++.+..+|..+. ++|++|++++| ......+..|.++++|++|+ +..+ |..+.++++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 5566677777777654 48889988886 23332333666777777766 3344 3457777777777777776
Q ss_pred CCcccchh-hhcccCCCeEEeCCccccccCc--cCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCC
Q 035647 621 NLRRLPQR-IGKLVNLRHLIFVDVYLDYMPK--GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGL 697 (938)
Q Consensus 621 ~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~ 697 (938)
++.+|.. ++++++|++|++++|.+..+|. .++++++|++|++..+....
T Consensus 112 -l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------------------------- 163 (353)
T 2z80_A 112 -LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT--------------------------- 163 (353)
T ss_dssp -CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------------------
T ss_pred -CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc---------------------------
Confidence 6666665 6777777777777777777766 46677777777665542111
Q ss_pred CCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchh-h
Q 035647 698 GNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWV-V 776 (938)
Q Consensus 698 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~-~ 776 (938)
......+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.. +|..+ .
T Consensus 164 -------~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~ 219 (353)
T 2z80_A 164 -------KIQRKDFAGLTFLEELEIDASDLQS----------------YEPKSLKSIQNVSHLILHMKQHIL-LLEIFVD 219 (353)
T ss_dssp -------EECTTTTTTCCEEEEEEEEETTCCE----------------ECTTTTTTCSEEEEEEEECSCSTT-HHHHHHH
T ss_pred -------ccCHHHccCCCCCCEEECCCCCcCc----------------cCHHHHhccccCCeecCCCCcccc-chhhhhh
Confidence 0001223455667777777776652 123455666777777777777655 55443 3
Q ss_pred hccCccEEEEeCCCCCCCCCC-CCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccc
Q 035647 777 LLNKLKKLYLTHCNNCEIMPS-LGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWE 855 (938)
Q Consensus 777 ~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 855 (938)
.+++|+.|++++|......+. +.. ....+.++.+++.++. +.
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~------------------------------------~~~~~~l~~l~L~~~~-l~ 262 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELST------------------------------------GETNSLIKKFTFRNVK-IT 262 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------------------------------------------CCCCCCEEEEESCB-CC
T ss_pred hcccccEEECCCCcccccccccccc------------------------------------ccccchhhcccccccc-cc
Confidence 567777777777754332211 100 0122334444444331 11
Q ss_pred c--ccccccccccCCcccEEeecCCccccCCCcCC-CCCCCccEEEEcCCcc
Q 035647 856 E--WEIEKEDIAVMPQLISLELGSCSKLKSLPVDL-LRSQKLKMLEIYNCPI 904 (938)
Q Consensus 856 ~--~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~ 904 (938)
+ +...+..+..+++|+.|++++| .++.+|..+ .++++|+.|++++||-
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 1 1111333567888888888887 467788764 7788888888888864
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=3.5e-18 Score=204.38 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=90.2
Q ss_pred cccCceEEEEEEcCCCCCCcc-cccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcch-hccCCCcc
Q 035647 539 TCQEELRHSILFLGYNASLPV-CIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPE-TCCELCNL 611 (938)
Q Consensus 539 ~~~~~lr~l~l~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~-~i~~L~~L 611 (938)
....++++|++++|.+..+++ .+.++++|++|+|++| ......+..|.++++|++|+ +..+|. .+++|++|
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N--~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC--cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 445789999999999888765 6889999999999997 33333456789999999998 667775 58999999
Q ss_pred cEEeecCCCCCcc--cchhhhcccCCCeEEeCCccccccCc
Q 035647 612 QTIEIEECSNLRR--LPQRIGKLVNLRHLIFVDVYLDYMPK 650 (938)
Q Consensus 612 ~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~l~~lp~ 650 (938)
++|++++|. +.. +|..++.+++|++|++++|.+..+++
T Consensus 151 ~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 151 KELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CeeccccCc-cccCCCchhhccchhhhhhcccCcccccccc
Confidence 999999998 654 67888999999999999998776643
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.3e-17 Score=194.48 Aligned_cols=254 Identities=19% Similarity=0.182 Sum_probs=170.8
Q ss_pred CCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEE
Q 035647 565 KKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLI 639 (938)
Q Consensus 565 ~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 639 (938)
.+++.|+++++ .+..+|..+. ++|++|+ +..+|. .+++|++|+|++|. ++.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n---~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGES---GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSS---CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEE
T ss_pred CCCcEEEecCC---CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEE
Confidence 35777887775 2234454433 4555555 444554 34556666666655 555554 455666666
Q ss_pred eCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCc
Q 035647 640 FVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVH 719 (938)
Q Consensus 640 l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 719 (938)
+++|.+..+|. .+++|+.|++..|.... + +. .+++|++
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~--------------------------------l----p~---~l~~L~~ 145 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGNQLTS--------------------------------L----PV---LPPGLQE 145 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSSCCSC--------------------------------C----CC---CCTTCCE
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCCCCCc--------------------------------C----CC---CCCCCCE
Confidence 66665555554 33445554443322111 0 01 1368999
Q ss_pred eEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCC
Q 035647 720 LELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLG 799 (938)
Q Consensus 720 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~ 799 (938)
|++++|.+.+. + ..+++|+.|++++|.+.. +| ..+++|+.|++++|.... +|.
T Consensus 146 L~Ls~N~l~~l-----------------~---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~-- 198 (622)
T 3g06_A 146 LSVSDNQLASL-----------------P---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT-- 198 (622)
T ss_dssp EECCSSCCSCC-----------------C---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--
T ss_pred EECcCCcCCCc-----------------C---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC--
Confidence 99999987641 1 135789999999999988 88 457899999999997544 443
Q ss_pred CCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCc
Q 035647 800 KLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCS 879 (938)
Q Consensus 800 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 879 (938)
.+++|+.|++.+|. ++.++. .+++|+.|++++| .++.++ ..+++|+.|++++|
T Consensus 199 ~~~~L~~L~L~~N~-l~~l~~------------------~~~~L~~L~Ls~N-~L~~lp------~~l~~L~~L~Ls~N- 251 (622)
T 3g06_A 199 LPSELYKLWAYNNR-LTSLPA------------------LPSGLKELIVSGN-RLTSLP------VLPSELKELMVSGN- 251 (622)
T ss_dssp CCTTCCEEECCSSC-CSSCCC------------------CCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-
T ss_pred ccchhhEEECcCCc-ccccCC------------------CCCCCCEEEccCC-ccCcCC------CCCCcCcEEECCCC-
Confidence 25789999998875 443331 4589999999998 556554 36799999999998
Q ss_pred cccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccC
Q 035647 880 KLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 880 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~ 935 (938)
.++.+|. .+++|+.|++++|. +. ..+..+..++++..+.+++|.|+|
T Consensus 252 ~L~~lp~---~~~~L~~L~Ls~N~-----L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 252 RLTSLPM---LPSGLLSLSVYRNQ-----LT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-----CC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCcCCc---ccccCcEEeCCCCC-----CC-cCCHHHhhccccCEEEecCCCCCC
Confidence 5888987 57899999999993 22 345556778888899999999876
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=189.52 Aligned_cols=233 Identities=20% Similarity=0.230 Sum_probs=154.4
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccc-hhhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLP-QRIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNK 675 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~ 675 (938)
+..+|..+. .+++.|+|++|. +..++ ..+.++++|++|++++|.+..++. .|.++++|++|++..+.....
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~---- 127 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI---- 127 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC----
T ss_pred cCcCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee----
Confidence 445555443 567778888777 66554 457778888888888877766653 467777777776655432210
Q ss_pred ccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCC
Q 035647 676 ACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPP 755 (938)
Q Consensus 676 ~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (938)
....+..+++|+.|++++|.+.. .....+..++
T Consensus 128 -------------------------------~~~~~~~l~~L~~L~L~~N~i~~----------------~~~~~~~~l~ 160 (440)
T 3zyj_A 128 -------------------------------PNGAFVYLSKLKELWLRNNPIES----------------IPSYAFNRIP 160 (440)
T ss_dssp -------------------------------CTTTSCSCSSCCEEECCSCCCCE----------------ECTTTTTTCT
T ss_pred -------------------------------CHhHhhccccCceeeCCCCcccc----------------cCHHHhhhCc
Confidence 01224455677777777776652 1123466678
Q ss_pred CcceEEEeecCCCCCCCc-hhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCC
Q 035647 756 NIESLEMCYYKGKTALPS-WVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSS 834 (938)
Q Consensus 756 ~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 834 (938)
+|+.|+|++|...+.+|. .+..+++|+.|+|++|. ...+|.+..+++|+.|+|++|. ++.++.
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------------- 224 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNH-LSAIRP-------------- 224 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSC-CCEECT--------------
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCc-cCccCh--------------
Confidence 888888887554443554 46678888888888884 3456778888888888888864 444432
Q ss_pred cccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCcc
Q 035647 835 SSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 835 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 904 (938)
..+..+++|+.|++++| .+..+. +..+..+++|+.|+|++| .++.+| ..+..+++|+.|++++||-
T Consensus 225 ~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQS-QIQVIE--RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTTTCTTCCEEECTTC-CCCEEC--TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hhhccCccCCEEECCCC-ceeEEC--hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 22457888888888887 344443 334667888888888887 466665 3456788888888888764
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=7.6e-18 Score=191.83 Aligned_cols=237 Identities=20% Similarity=0.190 Sum_probs=165.3
Q ss_pred eEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcc-hhccCCCcccEEeec
Q 035647 544 LRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELP-ETCCELCNLQTIEIE 617 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp-~~i~~L~~L~~L~L~ 617 (938)
.+.+...+..+..+|..+. ++|+.|++++| ......+..|.++++|++|+ +..++ ..+.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMEN--NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCC--cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456666666666776554 67888888887 34444566777777777777 34443 567788888888888
Q ss_pred CCCCCcccchh-hhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEc
Q 035647 618 ECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIR 695 (938)
Q Consensus 618 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~ 695 (938)
+|. +..+|.. +..+++|++|++++|.+..+|. .+.++++|+.|++..+.... .
T Consensus 132 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~-------------~----------- 186 (452)
T 3zyi_A 132 DNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-------------Y----------- 186 (452)
T ss_dssp SSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------------E-----------
T ss_pred CCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-------------c-----------
Confidence 887 7777654 7778888888888888877776 47778888877654422111 0
Q ss_pred CCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchh
Q 035647 696 GLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWV 775 (938)
Q Consensus 696 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~ 775 (938)
.....+..+.+|+.|++++|.+... +.+..+++|+.|+|++|.+.+..|..+
T Consensus 187 ----------i~~~~~~~l~~L~~L~L~~n~l~~~------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 187 ----------ISEGAFEGLFNLKYLNLGMCNIKDM------------------PNLTPLVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp ----------ECTTTTTTCTTCCEEECTTSCCSSC------------------CCCTTCTTCCEEECTTSCCSEECGGGG
T ss_pred ----------cChhhccCCCCCCEEECCCCccccc------------------ccccccccccEEECcCCcCcccCcccc
Confidence 0112355667888888888877631 236677888888888888887557778
Q ss_pred hhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcc
Q 035647 776 VLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLY 852 (938)
Q Consensus 776 ~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 852 (938)
..+++|+.|+|++|......+ .+..+++|+.|+|++|. ++.++.. .+..+++|+.|+|++|+
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~--------------~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHD--------------LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTT--------------SSTTCTTCCEEECCSSC
T ss_pred cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChH--------------HhccccCCCEEEccCCC
Confidence 888888888888887655544 57788888888888764 5444432 23467888888888875
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=3.1e-18 Score=184.35 Aligned_cols=235 Identities=16% Similarity=0.162 Sum_probs=155.4
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccchh-hhcccCCCeEEeCCcccccc---CccCCCCCCCCcCCceEecCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYM---PKGIERLTCLRTLSEFVVSGRGKYG 673 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~~~~~~~~~~~~ 673 (938)
+..+|..+. ++|++|++++|. ++.+|.. +.++++|++|++++|.+..+ |..+..+++|++|++..+....
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--- 92 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--- 92 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE---
T ss_pred cccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc---
Confidence 334444332 466777777766 6666654 46677777777777765543 4445556666666554332110
Q ss_pred CCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCC
Q 035647 674 NKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQA 753 (938)
Q Consensus 674 ~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 753 (938)
.+..+..+++|++|++++|.+.... ....+..
T Consensus 93 ---------------------------------l~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~~ 124 (306)
T 2z66_A 93 ---------------------------------MSSNFLGLEQLEHLDFQHSNLKQMS---------------EFSVFLS 124 (306)
T ss_dssp ---------------------------------EEEEEETCTTCCEEECTTSEEESST---------------TTTTTTT
T ss_pred ---------------------------------ChhhcCCCCCCCEEECCCCcccccc---------------cchhhhh
Confidence 0112334556777777666554210 0134667
Q ss_pred CCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCC--CCCCCCCCCCccceeeccccCceEeCcccccCCCCCCC
Q 035647 754 PPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCE--IMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSS 831 (938)
Q Consensus 754 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 831 (938)
+++|+.|++++|.+.+..|..+..+++|+.|++++|...+ .+..+..+++|++|++++|. ++.++.
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----------- 192 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP----------- 192 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----------
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCH-----------
Confidence 7888999998888877566777888999999999987554 34468888999999998875 444432
Q ss_pred CCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCC-CccEEEEcCCcc
Q 035647 832 SSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQ-KLKMLEIYNCPI 904 (938)
Q Consensus 832 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~ 904 (938)
..+..+++|++|++++|. +..++. ..+..+++|+.|++++|......|..+..++ +|+.|++++|+-
T Consensus 193 ---~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 193 ---TAFNSLSSLQVLNMSHNN-FFSLDT--FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ---TTTTTCTTCCEEECTTSC-CSBCCS--GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ---HHhcCCCCCCEEECCCCc-cCccCh--hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 224578899999999884 444432 2356889999999999975556677787774 899999999864
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.8e-17 Score=188.67 Aligned_cols=233 Identities=23% Similarity=0.220 Sum_probs=163.1
Q ss_pred CCCcchhccCCCcccEEeecCCCCCccc-chhhhcccCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRL-PQRIGKLVNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRGKYGNK 675 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~ 675 (938)
+..+|..+. ++|++|+|++|. +..+ |..+.++++|++|++++|.+..++ ..|.++++|++|++..+.....
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 138 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI---- 138 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC----
T ss_pred cCccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc----
Confidence 345555443 578888888887 6655 456788888888888888877766 3577788888887655433220
Q ss_pred ccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCC
Q 035647 676 ACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPP 755 (938)
Q Consensus 676 ~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (938)
....+..+++|+.|++++|.+.. .....+..++
T Consensus 139 -------------------------------~~~~~~~l~~L~~L~L~~N~l~~----------------~~~~~~~~l~ 171 (452)
T 3zyi_A 139 -------------------------------PSGAFEYLSKLRELWLRNNPIES----------------IPSYAFNRVP 171 (452)
T ss_dssp -------------------------------CTTTSSSCTTCCEEECCSCCCCE----------------ECTTTTTTCT
T ss_pred -------------------------------ChhhhcccCCCCEEECCCCCcce----------------eCHhHHhcCC
Confidence 01224456678888888877652 1123566788
Q ss_pred CcceEEEeecCCCCCCCc-hhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCC
Q 035647 756 NIESLEMCYYKGKTALPS-WVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSS 834 (938)
Q Consensus 756 ~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 834 (938)
+|+.|++++|...+.+|. .+..+++|+.|+|++|.. ..+|.+..+++|+.|+|++|. ++.++.
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------------- 235 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNH-FPEIRP-------------- 235 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSC-CSEECG--------------
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCc-CcccCc--------------
Confidence 899999988655544554 467888999999999854 456778889999999998875 444432
Q ss_pred cccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCcc
Q 035647 835 SSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 835 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 904 (938)
..+..+++|+.|++++| .+..+. +..+..+++|+.|++++| .++.+| ..+..+++|+.|++++||-
T Consensus 236 ~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNS-QVSLIE--RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp GGGTTCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccccCccCCCEEEeCCC-cCceEC--HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 22457889999999987 344443 334678899999999888 466666 4467789999999998873
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=3.9e-19 Score=192.11 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=61.9
Q ss_pred CCCCCcceEEEeecCCCCCCCchh-hhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCC
Q 035647 752 QAPPNIESLEMCYYKGKTALPSWV-VLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHS 830 (938)
Q Consensus 752 ~~~~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 830 (938)
..+++|+.|++++|.+.+..|..+ ..+++|+.|+|++|.... ++....+++|++|++++|. ++.++..
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~--------- 209 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNK-LAFMGPE--------- 209 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCCCCTTCCEEECCSSC-CCEECGG---------
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccccccccCCEEECCCCc-CCcchhh---------
Confidence 334555555555555554223333 245555555555554322 2333345555555555543 3333322
Q ss_pred CCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccc-cCCCcCCCCCCCccEEEEcCCcch
Q 035647 831 SSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKL-KSLPVDLLRSQKLKMLEIYNCPIL 905 (938)
Q Consensus 831 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~l 905 (938)
+..+++|+.|++++| .+..++ ..+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.+
T Consensus 210 ------~~~l~~L~~L~L~~N-~l~~l~---~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 210 ------FQSAAGVTWISLRNN-KLVLIE---KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp ------GGGGTTCSEEECTTS-CCCEEC---TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------hcccCcccEEECcCC-cccchh---hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 224455555555554 233332 22345555555555555433 234444444555555555544433
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=2.9e-18 Score=184.54 Aligned_cols=111 Identities=22% Similarity=0.135 Sum_probs=52.2
Q ss_pred EEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhh-hhhccCcccccC-----CCCc---chhccCCCcccEEee
Q 035647 546 HSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRY-FFDQLTCLRALR-----TEEL---PETCCELCNLQTIEI 616 (938)
Q Consensus 546 ~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~-~~~~l~~Lr~L~-----i~~l---p~~i~~L~~L~~L~L 616 (938)
.+...++.+..+|..+. ++|+.|++++|. . ..+|. .|.++++|++|+ +..+ |..+..+++|++|++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~--l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK--L-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC--C-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc--c-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45555556666665443 577777777752 1 12222 233444444433 1111 233444455555555
Q ss_pred cCCCCCcccchhhhcccCCCeEEeCCccccccCc--cCCCCCCCCcCC
Q 035647 617 EECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPK--GIERLTCLRTLS 662 (938)
Q Consensus 617 ~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~ 662 (938)
++|. +..+|..+..+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 86 s~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 86 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp CSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred CCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence 5554 44444444555555555555554444432 344444444443
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=7.9e-19 Score=208.00 Aligned_cols=372 Identities=13% Similarity=0.050 Sum_probs=188.5
Q ss_pred CceEEEEEEcCCCCC-CcccccC-CCC-ceEEEEecCCCcchhhhhhhhhccCcccccCCCC----------cchhccCC
Q 035647 542 EELRHSILFLGYNAS-LPVCIYN-AKK-LRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEE----------LPETCCEL 608 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~-~~~~~~~-l~~-Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~----------lp~~i~~L 608 (938)
.+++.+++.++.+.. .+..+.. +++ |++|++.+|.......++..+..+++|++|++.. ++.....+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 567777777775543 2222333 333 7788777764222334555556777777777332 33344567
Q ss_pred CcccEEeecCCCCCc-----ccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccc
Q 035647 609 CNLQTIEIEECSNLR-----RLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMR 683 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~ 683 (938)
++|++|++++|. +. .++..+.++++|++|++++|.+..+|..+.++++|+.|.+...............+..+.
T Consensus 192 ~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 778888887776 43 345556677788888888777777777777777777776643222111111112222222
Q ss_pred cccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCC---------ccccccccccccHHHHhhhcCCC
Q 035647 684 DLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDG---------AGEAMNLENEVNHEAISEALQAP 754 (938)
Q Consensus 684 ~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~ 754 (938)
+|. .+.+.... ....+..+..+++|++|++++|.+.+.. ..+.+.+.+......+......+
T Consensus 271 ~L~----~L~l~~~~-----~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 271 KLC----RLGLSYMG-----PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp TCC----EEEETTCC-----TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred ccc----ccCccccc-----hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 222 22232210 1112233445566677777666543100 00111111111122233333445
Q ss_pred CCcceEEEee----------c-CCCCC-CCchhhhccCccEEEEeCCCCCCC-CCCCCC-CCCccceeecc---ccCceE
Q 035647 755 PNIESLEMCY----------Y-KGKTA-LPSWVVLLNKLKKLYLTHCNNCEI-MPSLGK-LPSLEILQIIG---MRSVKR 817 (938)
Q Consensus 755 ~~L~~L~L~~----------~-~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~-l~~l~~-l~~L~~L~L~~---~~~l~~ 817 (938)
++|++|++++ + .++.. ++.....+++|++|+++.+..... +..++. +++|++|++.+ |..++.
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 5666666662 2 22210 122223466666666644432211 112332 66677777753 222322
Q ss_pred eCcccccCCCCCCCCCCcccccCCccceeeccCccc-cccccccccccccCCcccEEeecCCcccc-CCCcCCCCCCCcc
Q 035647 818 VGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYE-WEEWEIEKEDIAVMPQLISLELGSCSKLK-SLPVDLLRSQKLK 895 (938)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~ 895 (938)
.|..- ..+..+..+++|++|++++|.. +.+... ..-...+++|+.|++++|.... .++..+.++++|+
T Consensus 422 ~p~~~---------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 422 LPLDN---------GVRSLLIGCKKLRRFAFYLRQGGLTDLGL-SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp CCCHH---------HHHHHHHHCTTCCEEEEECCGGGCCHHHH-HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred chHHH---------HHHHHHHhCCCCCEEEEecCCCCccHHHH-HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 21100 0011134688888888876542 221111 1101247888888888875222 2444456678888
Q ss_pred EEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccCCC
Q 035647 896 MLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQGGS 937 (938)
Q Consensus 896 ~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~~~ 937 (938)
.|++++|+ +...... ..+..++++..+++++|.+++.+
T Consensus 492 ~L~l~~n~-l~~~~~~---~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 492 KLEMRGCC-FSERAIA---AAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp EEEEESCC-CBHHHHH---HHHHHCSSCCEEEEESCBCCTTC
T ss_pred eeeccCCC-CcHHHHH---HHHHhcCccCeeECcCCcCCHHH
Confidence 99998887 3322110 11124567778888888887765
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=186.22 Aligned_cols=256 Identities=15% Similarity=0.131 Sum_probs=193.2
Q ss_pred CcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCCCCCCCccC
Q 035647 600 ELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRGKYGNKACN 678 (938)
Q Consensus 600 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~ 678 (938)
.+|.....-.....++.++.. +..+|..+. ++|++|++++|.+..++ ..|.++++|++|++..+....
T Consensus 34 ~Cp~~C~C~~~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-------- 102 (440)
T 3zyj_A 34 TCPSVCSCSNQFSKVICVRKN-LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-------- 102 (440)
T ss_dssp CCCSSSEECTTSCEEECCSCC-CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE--------
T ss_pred cCCCCCEeCCCCCEEEeCCCC-cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc--------
Confidence 344332222346778888876 999998765 78999999999988876 468899999999876543321
Q ss_pred ccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcc
Q 035647 679 LEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIE 758 (938)
Q Consensus 679 l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 758 (938)
.....+..+.+|+.|++++|.+... ....+..+++|+
T Consensus 103 ---------------------------i~~~~~~~l~~L~~L~L~~n~l~~~----------------~~~~~~~l~~L~ 139 (440)
T 3zyj_A 103 ---------------------------IEIGAFNGLANLNTLELFDNRLTTI----------------PNGAFVYLSKLK 139 (440)
T ss_dssp ---------------------------ECGGGGTTCSSCCEEECCSSCCSSC----------------CTTTSCSCSSCC
T ss_pred ---------------------------cChhhccCCccCCEEECCCCcCCee----------------CHhHhhccccCc
Confidence 0123456678999999999988741 123577889999
Q ss_pred eEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC--CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcc
Q 035647 759 SLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP--SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSS 836 (938)
Q Consensus 759 ~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 836 (938)
.|+|++|.+....+..+..+++|+.|+|++|.....++ .+..+++|++|++++|. ++.+|.
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~---------------- 202 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN---------------- 202 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC----------------
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc----------------
Confidence 99999999988334467799999999999987666655 48899999999999975 544432
Q ss_pred cccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCCC
Q 035647 837 IVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGED 916 (938)
Q Consensus 837 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 916 (938)
+..+++|++|+|++| .+..+. +..+..+++|+.|++++|......|..+.++++|+.|++++| .+.......
T Consensus 203 ~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~~ 274 (440)
T 3zyj_A 203 LTPLIKLDELDLSGN-HLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-----NLTLLPHDL 274 (440)
T ss_dssp CTTCSSCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-----CCCCCCTTT
T ss_pred cCCCcccCEEECCCC-ccCccC--hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-----CCCccChhH
Confidence 458899999999998 455543 345779999999999998644445667889999999999999 333334445
Q ss_pred cccccCcCceeecccccc
Q 035647 917 WAKIFHIPNIQINGHNVQ 934 (938)
Q Consensus 917 ~~~i~~i~~i~i~~~~~~ 934 (938)
+..+.++..+.+++|.+.
T Consensus 275 ~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEcCCCCcc
Confidence 567788889999999764
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=8.5e-18 Score=184.86 Aligned_cols=264 Identities=13% Similarity=0.119 Sum_probs=158.3
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccch-hhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNK 675 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~ 675 (938)
++.+|..+. ++|++|++++|. ++.+|. .+.++++|++|++++|.+..+++ .|+++++|++|++..+....
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----- 114 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN----- 114 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-----
T ss_pred ccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-----
Confidence 344555443 367777777776 666655 56777777777777777666543 46667777766654433221
Q ss_pred ccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCC
Q 035647 676 ACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPP 755 (938)
Q Consensus 676 ~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (938)
+ ....+..+++|++|++++|.+..... ...+..++
T Consensus 115 ------------~------------------~~~~~~~l~~L~~L~L~~n~l~~l~~---------------~~~~~~l~ 149 (353)
T 2z80_A 115 ------------L------------------SSSWFKPLSSLTFLNLLGNPYKTLGE---------------TSLFSHLT 149 (353)
T ss_dssp ------------C------------------CHHHHTTCTTCSEEECTTCCCSSSCS---------------SCSCTTCT
T ss_pred ------------C------------------CHhHhCCCccCCEEECCCCCCcccCc---------------hhhhccCC
Confidence 0 01113344566666666665542100 01355667
Q ss_pred CcceEEEeecC-CCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCC
Q 035647 756 NIESLEMCYYK-GKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSS 833 (938)
Q Consensus 756 ~L~~L~L~~~~-~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 833 (938)
+|+.|++++|. +....|..+..+++|+.|++++|......| .++.+++|++|++++|. +..++..+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~----------- 217 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIF----------- 217 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHH-----------
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhh-----------
Confidence 77777777773 444234456677777777777776554433 56677777777777654 33333221
Q ss_pred CcccccCCccceeeccCccccccccccc-cccccCCcccEEeecCCccc----cCCCcCCCCCCCccEEEEcCCcchHHh
Q 035647 834 SSSIVAFPKLKKLTLRGLYEWEEWEIEK-EDIAVMPQLISLELGSCSKL----KSLPVDLLRSQKLKMLEIYNCPILKER 908 (938)
Q Consensus 834 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~c~~l~~~ 908 (938)
+..+++|+.|++++|. +..++... ......+.++.++++++..- ..+|..+.++++|+.|++++|.
T Consensus 218 ---~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~----- 288 (353)
T 2z80_A 218 ---VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ----- 288 (353)
T ss_dssp ---HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-----
T ss_pred ---hhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-----
Confidence 2246788888888773 33332110 01224567888888877432 2367777889999999999993
Q ss_pred hccCCCCC-cccccCcCceeeccccccCC
Q 035647 909 FKKDVGED-WAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 909 ~~~~~~~~-~~~i~~i~~i~i~~~~~~~~ 936 (938)
+. ..+.. +..++++..+.+++|.+.+.
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 33 23333 46778899999999998874
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.7e-17 Score=189.86 Aligned_cols=214 Identities=16% Similarity=0.075 Sum_probs=132.1
Q ss_pred CcccEEeecCCCCCcccc-hhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccc
Q 035647 609 CNLQTIEIEECSNLRRLP-QRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNN 687 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~ 687 (938)
++|++|+|++|. +..+| ..++.+++|++|++++|.+..+++ ++.+++|++|++.+|.... +
T Consensus 34 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-----------l----- 95 (487)
T 3oja_A 34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-----------L----- 95 (487)
T ss_dssp GGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-----------E-----
T ss_pred CCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-----------C-----
Confidence 377788888777 55543 567778888888888877766554 7777777777665432111 0
Q ss_pred cCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCC
Q 035647 688 LRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKG 767 (938)
Q Consensus 688 L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 767 (938)
...++|+.|++++|.+.+.. ...+++|+.|+|++|.+
T Consensus 96 ------------------------~~~~~L~~L~L~~N~l~~~~-------------------~~~l~~L~~L~L~~N~l 132 (487)
T 3oja_A 96 ------------------------LVGPSIETLHAANNNISRVS-------------------CSRGQGKKNIYLANNKI 132 (487)
T ss_dssp ------------------------EECTTCCEEECCSSCCCCEE-------------------ECCCSSCEEEECCSSCC
T ss_pred ------------------------CCCCCcCEEECcCCcCCCCC-------------------ccccCCCCEEECCCCCC
Confidence 01145666667666665310 12245677777777777
Q ss_pred CCCCCchhhhccCccEEEEeCCCCCCCCC-CCC-CCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccce
Q 035647 768 KTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLG-KLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKK 845 (938)
Q Consensus 768 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 845 (938)
.+..|..+..+++|+.|+|++|......| .+. .+++|+.|+|++|. ++.++. ...+++|+.
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~----------------~~~l~~L~~ 195 (487)
T 3oja_A 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG----------------QVVFAKLKT 195 (487)
T ss_dssp CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC----------------CCCCTTCCE
T ss_pred CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc----------------cccCCCCCE
Confidence 66445566677777777777776554333 343 56777777777665 433321 124667777
Q ss_pred eeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcch
Q 035647 846 LTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPIL 905 (938)
Q Consensus 846 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 905 (938)
|+|++| .+..++ ..+..+++|+.|++++|. +..+|..+..+++|+.|++++|+-.
T Consensus 196 L~Ls~N-~l~~~~---~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 196 LDLSSN-KLAFMG---PEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECCSS-CCCEEC---GGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EECCCC-CCCCCC---HhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 777776 344432 225567777777777763 5567766777777777777777554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=1.1e-18 Score=188.52 Aligned_cols=161 Identities=15% Similarity=0.135 Sum_probs=108.4
Q ss_pred ccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhc-CCCCCcceEEEeecCCCCCCCchhhhccCccEEEEe
Q 035647 709 TNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEAL-QAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLT 787 (938)
Q Consensus 709 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~ 787 (938)
..+..+++|+.|++++|.+.+. .+..+ ..+++|+.|++++|.+.+ +|... .+++|+.|+|+
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~~L~~L~Ls 199 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTV----------------NFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLS 199 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEE----------------EGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCTTCCEEECC
T ss_pred hhhhccCCCCEEECCCCCCCcc----------------cHHHHhhccCcCCEEECCCCcCcc-ccccc-ccccCCEEECC
Confidence 3455677888888888877631 12222 356789999999998877 55433 48899999999
Q ss_pred CCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccC
Q 035647 788 HCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVM 867 (938)
Q Consensus 788 ~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 867 (938)
+|.....++.+..+++|++|++++|. ++.+|.. +..+++|+.|++++|+..... .+..+..+
T Consensus 200 ~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~---------------~~~l~~L~~L~l~~N~~~~~~--~~~~~~~~ 261 (317)
T 3o53_A 200 SNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA---------------LRFSQNLEHFDLRGNGFHCGT--LRDFFSKN 261 (317)
T ss_dssp SSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT---------------CCCCTTCCEEECTTCCCBHHH--HHHHHHTC
T ss_pred CCcCCcchhhhcccCcccEEECcCCc-ccchhhH---------------hhcCCCCCEEEccCCCccCcC--HHHHHhcc
Confidence 99776666678888999999998875 6666543 347889999999998543121 13345688
Q ss_pred CcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcch
Q 035647 868 PQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPIL 905 (938)
Q Consensus 868 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 905 (938)
++|+.|++.+|+.++..+..-...+.+....-..|..+
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCC
T ss_pred ccceEEECCCchhccCCchhccCCCceecccceeeccC
Confidence 99999999888777655433222333333333345443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=6e-18 Score=193.61 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=130.8
Q ss_pred chhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccc
Q 035647 602 PETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEG 681 (938)
Q Consensus 602 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~ 681 (938)
|..++.+++|++|+|++|. +...++ ++.+++|++|++++|.+..+|.. ++|++|++..+......
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~--------- 115 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVS--------- 115 (487)
T ss_dssp GGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEE---------
T ss_pred HHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCC---------
Confidence 3466777778888888777 655544 77788888888888877766643 66777766544332200
Q ss_pred cccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEE
Q 035647 682 MRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLE 761 (938)
Q Consensus 682 L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 761 (938)
...+++|+.|++++|.+.+ ..+..+..+++|+.|+
T Consensus 116 -----------------------------~~~l~~L~~L~L~~N~l~~----------------~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 116 -----------------------------CSRGQGKKNIYLANNKITM----------------LRDLDEGCRSRVQYLD 150 (487)
T ss_dssp -----------------------------ECCCSSCEEEECCSSCCCS----------------GGGBCGGGGSSEEEEE
T ss_pred -----------------------------ccccCCCCEEECCCCCCCC----------------CCchhhcCCCCCCEEE
Confidence 0112456666776666653 1223445566777777
Q ss_pred EeecCCCCCCCchhh-hccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccC
Q 035647 762 MCYYKGKTALPSWVV-LLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAF 840 (938)
Q Consensus 762 L~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 840 (938)
|++|.+.+..|..+. .+++|+.|+|++|..... +....+++|+.|+|++|. ++.+|.. +..+
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~---------------~~~l 213 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPE---------------FQSA 213 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGG---------------GGGG
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHh---------------HcCC
Confidence 777777664455554 567777777777754333 444557777777777654 4444432 2356
Q ss_pred CccceeeccCccccccccccccccccCCcccEEeecCCccc-cCCCcCCCCCCCccEEEEc
Q 035647 841 PKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKL-KSLPVDLLRSQKLKMLEIY 900 (938)
Q Consensus 841 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~ 900 (938)
++|+.|++++| .+..+ |..+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 214 ~~L~~L~Ls~N-~l~~l---p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNN-KLVLI---EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTS-CCCEE---CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccEEEecCC-cCccc---chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 67777777776 33443 233556677777777777544 2345445555555555554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=7.4e-18 Score=181.61 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=93.3
Q ss_pred CCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCC---CCCC--CCCCCccceeeccccCceEeCcccccCCCCC
Q 035647 755 PNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEI---MPSL--GKLPSLEILQIIGMRSVKRVGDEFWGIENHH 829 (938)
Q Consensus 755 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~---l~~l--~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 829 (938)
++|++|++++|.+.+..|..+..+++|+.|+|++|...+. ++.+ +.+++|++|++++|. ++.++....
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~------ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCS------ 221 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHH------
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHH------
Confidence 6777777777777663345666777777777777764332 2222 667777777777764 332211100
Q ss_pred CCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhh
Q 035647 830 SSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERF 909 (938)
Q Consensus 830 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~ 909 (938)
..+..+++|++|++++|. +..... ...+..+++|+.|++++|. ++.+|..+. ++|+.|++++|. +
T Consensus 222 -----~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-----l 286 (312)
T 1wwl_A 222 -----ALAAARVQLQGLDLSHNS-LRDAAG-APSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-----L 286 (312)
T ss_dssp -----HHHHTTCCCSEEECTTSC-CCSSCC-CSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-----C
T ss_pred -----HHHhcCCCCCEEECCCCc-CCcccc-hhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-----C
Confidence 001256777777777763 333221 0123356777777777773 557776655 677777777772 2
Q ss_pred ccCCCCCcccccCcCceeeccccccCC
Q 035647 910 KKDVGEDWAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 910 ~~~~~~~~~~i~~i~~i~i~~~~~~~~ 936 (938)
... + .+..++++..+.+++|.|++.
T Consensus 287 ~~~-p-~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 287 DRN-P-SPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSC-C-CTTTSCEEEEEECTTCTTTCC
T ss_pred CCC-h-hHhhCCCCCEEeccCCCCCCC
Confidence 221 2 255566666777777777764
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=2.8e-16 Score=167.08 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=78.2
Q ss_pred hcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCC
Q 035647 750 ALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENH 828 (938)
Q Consensus 750 ~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 828 (938)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|......+ .++.+++|++|++++|. ++.++..
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~------- 171 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPER------- 171 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTT-------
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHH-------
Confidence 34455666666666666665334555666666666666665444333 25666666666666653 4444322
Q ss_pred CCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCcc
Q 035647 829 HSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 829 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 904 (938)
.+..+++|+.|++++|. +..+. +..+..+++|+.|++++|. +..+| ..+..+++|+.|++++||-
T Consensus 172 -------~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 172 -------AFRGLHSLDRLLLHQNR-VAHVH--PHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -------TTTTCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred -------HhcCccccCEEECCCCc-ccccC--HhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence 13356667777776663 33321 2335566777777777663 44454 3356667777777776654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.4e-17 Score=177.59 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=33.1
Q ss_pred CCCcccEEeecCCCCCcccchhh--hcccCCCeEEeCCccccccCccCCCC-----CCCCcCCceE
Q 035647 607 ELCNLQTIEIEECSNLRRLPQRI--GKLVNLRHLIFVDVYLDYMPKGIERL-----TCLRTLSEFV 665 (938)
Q Consensus 607 ~L~~L~~L~L~~~~~l~~lp~~i--~~L~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~~~~ 665 (938)
++++|++|++++|.....+|..+ +.+++|++|++++|.+..+|..++.+ ++|++|++..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC
Confidence 56666666666666223455554 56666666666666655555444444 4555554443
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=1.7e-19 Score=206.56 Aligned_cols=140 Identities=19% Similarity=0.111 Sum_probs=86.7
Q ss_pred CCCCCcceEEEeecCCCCC----CCchhhhccCccEEEEeCCCCCCCCC-C-----CCCCCCccceeeccccCceEeCcc
Q 035647 752 QAPPNIESLEMCYYKGKTA----LPSWVVLLNKLKKLYLTHCNNCEIMP-S-----LGKLPSLEILQIIGMRSVKRVGDE 821 (938)
Q Consensus 752 ~~~~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~L~~~~~~~~l~-~-----l~~l~~L~~L~L~~~~~l~~~~~~ 821 (938)
..+++|++|++++|.++.. +|..+..+++|++|+|++|......+ . ....++|++|++++|. ++..+..
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 331 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS 331 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHH
Confidence 3567888888888876642 45556667888888888875422111 1 1123578888888775 3221100
Q ss_pred cccCCCCCCCCCCcccccCCccceeeccCccccccccc--cccccc-cCCcccEEeecCCcccc-----CCCcCCCCCCC
Q 035647 822 FWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEI--EKEDIA-VMPQLISLELGSCSKLK-----SLPVDLLRSQK 893 (938)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~-~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~ 893 (938)
. .+..+..+++|++|++++| .+.+... ....+. ..++|+.|++++|. ++ .+|..+..+++
T Consensus 332 ~----------l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 332 H----------FSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHS 399 (461)
T ss_dssp H----------HHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCC
T ss_pred H----------HHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCC
Confidence 0 1112346789999999988 3443211 111111 26799999999885 44 56777777889
Q ss_pred ccEEEEcCCcc
Q 035647 894 LKMLEIYNCPI 904 (938)
Q Consensus 894 L~~L~l~~c~~ 904 (938)
|++|++++|+-
T Consensus 400 L~~L~l~~N~i 410 (461)
T 1z7x_W 400 LRELDLSNNCL 410 (461)
T ss_dssp CCEEECCSSSC
T ss_pred ccEEECCCCCC
Confidence 99999999853
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1.7e-15 Score=156.33 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=94.1
Q ss_pred hcCCCCCcceEEEeecCCCCCCCchhhhccCcc---EEEEeCC-CCCCCCC-CCCCCCCcc-ceeeccccCceEeCcccc
Q 035647 750 ALQAPPNIESLEMCYYKGKTALPSWVVLLNKLK---KLYLTHC-NNCEIMP-SLGKLPSLE-ILQIIGMRSVKRVGDEFW 823 (938)
Q Consensus 750 ~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~---~L~L~~~-~~~~~l~-~l~~l~~L~-~L~L~~~~~l~~~~~~~~ 823 (938)
.+..+++|+.|++++|.+.+ +|. +..+++|+ .|++++| ......+ .+..+++|+ .|++++|. ++.+|...+
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~ 176 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF 176 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence 45567778888888888777 776 66677776 8888888 4433333 377888888 88888765 556654322
Q ss_pred cCCCCCCCCCCcccccCCccceeeccCccccccccccccccccC-CcccEEeecCCccccCCCcCCCCCCCccEEEEcCC
Q 035647 824 GIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVM-PQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 824 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 902 (938)
.. ++|++|++++|+.+..++ +..+..+ ++|+.|++++| .++.+|.. .+++|+.|++++|
T Consensus 177 --------------~~-~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 --------------NG-TKLDAVYLNKNKYLTVID--KDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp --------------TT-CEEEEEECTTCTTCCEEC--TTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC
T ss_pred --------------CC-CCCCEEEcCCCCCcccCC--HHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCc
Confidence 23 689999999886566654 2335677 89999999887 47788865 5788999999888
Q ss_pred cc
Q 035647 903 PI 904 (938)
Q Consensus 903 ~~ 904 (938)
..
T Consensus 237 ~~ 238 (239)
T 2xwt_C 237 WT 238 (239)
T ss_dssp --
T ss_pred cC
Confidence 64
No 73
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=7.9e-15 Score=161.06 Aligned_cols=297 Identities=11% Similarity=0.054 Sum_probs=178.1
Q ss_pred ccCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC------C
Q 035647 176 INVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF------D 249 (938)
Q Consensus 176 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~ 249 (938)
..+..|+||+++++.+.+++.. + +++.|+|++|+|||||++++++.. . ++|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999998842 1 589999999999999999999752 1 7788775432 4
Q ss_pred HHHHHHHHHHHhcC-----------------CCC-CcccHHHHHHHHHHhhcC-ceeeEEeCCCCCCCc------CCchh
Q 035647 250 EFRIAKAIIEALEG-----------------SAP-NLGELQSLLQHIYASIVG-KRFFLVLDDVWTDDY------SKWEP 304 (938)
Q Consensus 250 ~~~~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~------~~~~~ 304 (938)
...+...+.+.+.. ..+ ......+....+.+.... ++.+||+||++.-+. ..+..
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55666666665432 000 123455566666655542 399999999965321 01112
Q ss_pred hhhhhccCCCCCEEEEEcCChHHHHhc-----------cc-CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHH
Q 035647 305 FHNCLMHGLRGSKILVTTRNEKVVRMM-----------ES-TDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQ 372 (938)
Q Consensus 305 l~~~l~~~~~gs~iivTtr~~~~~~~~-----------~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~ 372 (938)
+...+....++.++|+|++.......+ +. ...+.+.+|+.+|+.+++.......+... ..+.+.
T Consensus 154 ~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~----~~~~~~ 229 (350)
T 2qen_A 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV----PENEIE 229 (350)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHH
Confidence 222222222577999998876432111 11 23799999999999999987542222111 134567
Q ss_pred HHHhhcCCchhHHHHHHhhhcCCCCHHHHHH-HHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhcCCCCCcccc
Q 035647 373 KIVGNCKGLPLAAKTIGSLLRFKRTREEWES-VLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFPKDYNIE 451 (938)
Q Consensus 373 ~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~ 451 (938)
+|++.++|+|+++..++..+....+...+.. ..+... ......+. .+.+ . ++..+..+..+|. + ...
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~---~l~~-~-~~~~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK---GLIMGELE---ELRR-R-SPRYVDILRAIAL---G-YNR 297 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHHHHHH---HHHH-H-CHHHHHHHHHHHT---T-CCS
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH---HHHHHHHH---HHHh-C-ChhHHHHHHHHHh---C-CCC
Confidence 8999999999999999876532222222211 111000 00011111 1111 2 7888999999988 2 134
Q ss_pred hhHHHHHHHHcCCccccCCchHHHHHHHHHHHHHhcccCcccccCCCCCeeeEEecHHHHHHHH
Q 035647 452 KDELIKLWMAQGYIEQKGNKEMEIIGQEYFDCLATRSFFQDFVHDDEGTVIGCKMHDIVHDFAR 515 (938)
Q Consensus 452 ~~~li~~w~a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mh~li~~~~~ 515 (938)
...+.....+.. ++.+ ......+++.|.+.+++.... + .+.-.|++++++.+
T Consensus 298 ~~~l~~~~~~~~-----~~~~-~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG-----TKIP-EPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT-----CCCC-HHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHHc
Confidence 445544432211 0111 234678899999999997642 1 23345788888753
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=2.4e-18 Score=197.08 Aligned_cols=364 Identities=13% Similarity=0.114 Sum_probs=174.8
Q ss_pred CceEEEEEEcCCCCCCc--ccccCCCCceEEEEecCCCcc--hhhhhhhhhccCcccccCCCCc------chh-ccCCC-
Q 035647 542 EELRHSILFLGYNASLP--VCIYNAKKLRSLLIYSSLYDL--SAVLRYFFDQLTCLRALRTEEL------PET-CCELC- 609 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~--~~~~~l~~Lr~L~l~~~~~~~--~~~l~~~~~~l~~Lr~L~i~~l------p~~-i~~L~- 609 (938)
.+++++++.++.+...+ ..+..+++|++|++++|.... ...++..+..+++|++|++..- +.. ...+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45666777666655422 124566677777777663211 1245566666677777763321 111 22333
Q ss_pred ---cccEEeecCCCCCc-----ccchhhhcccCCCeEEeCCcccccc-Cc----c-CCCCCCCCcCCceEecCCCCCCC-
Q 035647 610 ---NLQTIEIEECSNLR-----RLPQRIGKLVNLRHLIFVDVYLDYM-PK----G-IERLTCLRTLSEFVVSGRGKYGN- 674 (938)
Q Consensus 610 ---~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~l-p~----~-i~~L~~L~~L~~~~~~~~~~~~~- 674 (938)
+|++|++++|. ++ .+|..+.++++|++|++++|.+... +. . ....++|++|++..+........
T Consensus 83 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 57777777776 44 3566666777777777777764321 11 1 22344566666655433220000
Q ss_pred CccCccccccccccCCeEEEcCCCCCCCh-hhhhhccC-ccccccCceEEEecCCCCCCccccccccccccHHHHhhhcC
Q 035647 675 KACNLEGMRDLNNLRGSLIIRGLGNVTSI-DEAKTTNL-DKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQ 752 (938)
Q Consensus 675 ~~~~l~~L~~L~~L~~~l~i~~~~~~~~~-~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 752 (938)
....+..++.|. .+.+.+.. +... .......+ ....+|++|++++|.+... ....++..+.
T Consensus 162 l~~~l~~~~~L~----~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------~~~~l~~~l~ 224 (461)
T 1z7x_W 162 LASVLRAKPDFK----ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD------------NCRDLCGIVA 224 (461)
T ss_dssp HHHHHHHCTTCC----EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT------------HHHHHHHHHH
T ss_pred HHHHHhhCCCCC----EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH------------HHHHHHHHHH
Confidence 000111122222 33333211 1000 00011111 1234677777777765521 1123455556
Q ss_pred CCCCcceEEEeecCCCCCC-----CchhhhccCccEEEEeCCCCCCC-----CCCCCCCCCccceeeccccCceEeCccc
Q 035647 753 APPNIESLEMCYYKGKTAL-----PSWVVLLNKLKKLYLTHCNNCEI-----MPSLGKLPSLEILQIIGMRSVKRVGDEF 822 (938)
Q Consensus 753 ~~~~L~~L~L~~~~~~~~l-----p~~~~~l~~L~~L~L~~~~~~~~-----l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 822 (938)
.+++|+.|++++|.+...- +.....+++|++|++++|..... ...+..+++|++|++++|. +...+...
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~ 303 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARL 303 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHH
Confidence 6677777777777654310 11122467777777777754331 1234456777777777664 32211110
Q ss_pred ccCCCCCCCCCCcccccCCccceeeccCcccccccc--ccccccccCCcccEEeecCCccccCC-C----cCCC-CCCCc
Q 035647 823 WGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWE--IEKEDIAVMPQLISLELGSCSKLKSL-P----VDLL-RSQKL 894 (938)
Q Consensus 823 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~l-p----~~l~-~l~~L 894 (938)
.... .....++|++|++++|. +.... ..+..+..+++|+.|++++|. +... + ..+. ..++|
T Consensus 304 l~~~---------l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 304 LCET---------LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp HHHH---------HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCC
T ss_pred HHHH---------hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCce
Confidence 0000 00123577777777764 32221 112224456777777777774 3321 1 1111 15677
Q ss_pred cEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccCC
Q 035647 895 KMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 895 ~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~~ 936 (938)
++|++++|.- ........+..+...+++..+++++|.|++.
T Consensus 373 ~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 373 RVLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CEEECTTSCC-CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EEEECCCCCC-ChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 7777777732 2110001111223345666677777776543
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.4e-15 Score=159.59 Aligned_cols=200 Identities=18% Similarity=0.180 Sum_probs=119.4
Q ss_pred ccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCCCCCCCccCccccc
Q 035647 605 CCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMR 683 (938)
Q Consensus 605 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~ 683 (938)
+.++++|++++++++. ++.+|..+. ++|++|++++|.+..++ ..+..+++|+.|++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---------------- 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---------------- 66 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC----------------
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc----------------
Confidence 6678888888888877 888887664 68888888888876664 346666666666543322
Q ss_pred cccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEe
Q 035647 684 DLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMC 763 (938)
Q Consensus 684 ~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 763 (938)
+.. + .....+++|+.|+++
T Consensus 67 -------------------------------------------l~~-----------------~-~~~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 67 -------------------------------------------LTK-----------------L-QVDGTLPVLGTLDLS 85 (290)
T ss_dssp -------------------------------------------CCE-----------------E-ECCSCCTTCCEEECC
T ss_pred -------------------------------------------cCc-----------------c-cCCCCCCcCCEEECC
Confidence 210 0 001234455555555
Q ss_pred ecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCc
Q 035647 764 YYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPK 842 (938)
Q Consensus 764 ~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 842 (938)
+|.+.. +|..+..+++|+.|+|++|.....++ .+..+++|++|+|++|. ++.++.. .+..+++
T Consensus 86 ~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~--------------~~~~l~~ 149 (290)
T 1p9a_G 86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPG--------------LLTPTPK 149 (290)
T ss_dssp SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTT--------------TTTTCTT
T ss_pred CCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChh--------------hcccccC
Confidence 555554 55555556666666666665443333 35556666666666543 3333221 1235666
Q ss_pred cceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcc
Q 035647 843 LKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 843 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 904 (938)
|+.|++++| .+..++. ..+..+++|+.|++++| .++.+|..+..+++|+.|++++||-
T Consensus 150 L~~L~L~~N-~l~~l~~--~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 150 LEKLSLANN-NLTELPA--GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCEEECTTS-CCSCCCT--TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCEEECCCC-cCCccCH--HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 666666665 3444432 22346777777777766 4667777777777777777776654
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=2.4e-16 Score=167.59 Aligned_cols=214 Identities=18% Similarity=0.154 Sum_probs=147.1
Q ss_pred EEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCc-chhccCCCcccEEeecC
Q 035647 545 RHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEEL-PETCCELCNLQTIEIEE 618 (938)
Q Consensus 545 r~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~l-p~~i~~L~~L~~L~L~~ 618 (938)
+.++...+.+..+|..+ .++|+.|++++| ......+..|..+++|++|+ +..+ |..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC--cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555666666666543 457888888776 33333345677777777776 3334 56678888888888888
Q ss_pred CCCCccc-chhhhcccCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcC
Q 035647 619 CSNLRRL-PQRIGKLVNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRG 696 (938)
Q Consensus 619 ~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~ 696 (938)
|..+..+ |..+..+++|++|++++|.+..++ ..+.++++|++|++..+.....
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------- 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL------------------------- 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-------------------------
Confidence 8656666 556788888888888888877664 4477788888877655433220
Q ss_pred CCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhh
Q 035647 697 LGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVV 776 (938)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~ 776 (938)
....+..+++|+.|++++|.+... ....+..+++|+.|++++|.+.+..|.++.
T Consensus 145 ----------~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 145 ----------PDDTFRDLGNLTHLFLHGNRISSV----------------PERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCCEE----------------CTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ----------CHhHhccCCCccEEECCCCccccc----------------CHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 012245567788888888876531 123466778888888888888875577788
Q ss_pred hccCccEEEEeCCCCCCCCC-CCCCCCCccceeecccc
Q 035647 777 LLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMR 813 (938)
Q Consensus 777 ~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 813 (938)
.+++|+.|+|++|.....++ .+..+++|+.|++++|+
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 88888888888886655443 37778888888888765
No 77
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=6.1e-15 Score=165.94 Aligned_cols=303 Identities=12% Similarity=0.028 Sum_probs=180.2
Q ss_pred CCccccchHHHHHHHHHh-hcccCCCCCceEEEEE--EecCCChHHHHHHHHHcccccc---cCCC-eEEEEEeCCCCCH
Q 035647 178 VSEVRGRDEEMNILKSKL-LCEFGEEQHAIQIISM--VGMGGIGKTTLAQFVYNDSCVI---NNFD-KRMWVCVSDNFDE 250 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~ 250 (938)
+..|+||+++++++.+.| ...........+.+.| +|++|+||||||+.+++..... ..+. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321100023456666 9999999999999999863211 1122 4678887777788
Q ss_pred HHHHHHHHHHhcCCCCC-cccHHHHHHHHHHhhc--CceeeEEeCCCCCCCc------CCchhhhhhhccC---C--CCC
Q 035647 251 FRIAKAIIEALEGSAPN-LGELQSLLQHIYASIV--GKRFFLVLDDVWTDDY------SKWEPFHNCLMHG---L--RGS 316 (938)
Q Consensus 251 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~gs 316 (938)
..++..++..++...+. ..+..+....+.+.+. +++++||+||++.-.. +.+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998765332 2234455666666664 6799999999965211 2222222333221 1 344
Q ss_pred EEEEEcCChHHHHhcc--------c-CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcC------Cc
Q 035647 317 KILVTTRNEKVVRMME--------S-TDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCK------GL 381 (938)
Q Consensus 317 ~iivTtr~~~~~~~~~--------~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~ 381 (938)
.||+||+.......+. . ...+.+.+++.++++++|...+...... ..-..+....|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 5888887654322111 1 2249999999999999997654211000 0111345667888888 99
Q ss_pred hhHHHHHHhhhc-----CC---CCHHHHHHHHhhhcccchhhhchh-hhhhhhcccCCcHHHHHHHhhhcCCC--CCccc
Q 035647 382 PLAAKTIGSLLR-----FK---RTREEWESVLNSEMWWFEELEKYL-FAPLLLSYNDLPSMIKQCFLYCTVFP--KDYNI 450 (938)
Q Consensus 382 PLai~~~a~~l~-----~~---~~~~~w~~~l~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~k~~f~~~a~fp--~~~~i 450 (938)
|..+..++.... .. -+.+.+....... . ...+.-++..||++.+.++..++.+. .+..+
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 976655543221 11 1233333332211 1 23455677889999999999888753 22345
Q ss_pred chhHHHHHHHHcC--CccccCCchHHHHHHHHHHHHHhcccCcccc
Q 035647 451 EKDELIKLWMAQG--YIEQKGNKEMEIIGQEYFDCLATRSFFQDFV 494 (938)
Q Consensus 451 ~~~~li~~w~a~g--~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (938)
....+...+..-. ... .... .......+++.|...++|....
T Consensus 329 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYN-VKPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CHHHHHHHHHHHHHHHSC-CCCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred cHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 5555554442110 000 0111 1234567899999999997654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=1e-15 Score=164.20 Aligned_cols=198 Identities=16% Similarity=0.230 Sum_probs=136.8
Q ss_pred ccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccc
Q 035647 605 CCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRD 684 (938)
Q Consensus 605 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~ 684 (938)
...+++|+.|++++|. +..+| .+..+++|++|++++|.+..+|. +..+++|++|++..+.... +
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-----------~-- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-----------V-- 100 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-----------C--
T ss_pred HHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-----------c--
Confidence 3456778888888887 77777 47888888888888888877776 7788888888765543221 0
Q ss_pred ccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEee
Q 035647 685 LNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCY 764 (938)
Q Consensus 685 L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 764 (938)
..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++
T Consensus 101 ------------------------~~~~~l~~L~~L~l~~n~l~~-----------------~-~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 101 ------------------------SAIAGLQSIKTLDLTSTQITD-----------------V-TPLAGLSNLQVLYLDL 138 (308)
T ss_dssp ------------------------GGGTTCTTCCEEECTTSCCCC-----------------C-GGGTTCTTCCEEECCS
T ss_pred ------------------------hhhcCCCCCCEEECCCCCCCC-----------------c-hhhcCCCCCCEEECCC
Confidence 123345677777777777653 1 1266778888888888
Q ss_pred cCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccc
Q 035647 765 YKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLK 844 (938)
Q Consensus 765 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 844 (938)
|.+.+ +|. +..+++|+.|+|++|.... ++.+..+++|+.|++++|. ++.++. +..+++|+
T Consensus 139 n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~~----------------l~~l~~L~ 198 (308)
T 1h6u_A 139 NQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNK-ISDISP----------------LASLPNLI 198 (308)
T ss_dssp SCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG----------------GGGCTTCC
T ss_pred CccCc-Ccc-ccCCCCccEEEccCCcCCC-ChhhcCCCCCCEEECCCCc-cCcChh----------------hcCCCCCC
Confidence 88776 555 6778888888888885443 4447778888888888765 333321 34678888
Q ss_pred eeeccCccccccccccccccccCCcccEEeecCCccccCCCc
Q 035647 845 KLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPV 886 (938)
Q Consensus 845 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 886 (938)
+|++++| .+..++ .+..+++|+.|++++|+ +...|.
T Consensus 199 ~L~L~~N-~l~~~~----~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 199 EVHLKNN-QISDVS----PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp EEECTTS-CCCBCG----GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred EEEccCC-ccCccc----cccCCCCCCEEEccCCe-eecCCe
Confidence 8888887 344443 15678888888888875 555553
No 79
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=5.4e-14 Score=154.84 Aligned_cols=292 Identities=11% Similarity=0.060 Sum_probs=174.2
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC-----CCHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN-----FDEF 251 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 251 (938)
.+..|+||+++++.+.+ +. . +++.|+|++|+|||||++++++... . ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 73 1 5999999999999999999998522 1 2688887643 3445
Q ss_pred HHHHHHHHHhcC-------------CC-----C-----------CcccHHHHHHHHHHhhcCceeeEEeCCCCCCC---c
Q 035647 252 RIAKAIIEALEG-------------SA-----P-----------NLGELQSLLQHIYASIVGKRFFLVLDDVWTDD---Y 299 (938)
Q Consensus 252 ~~~~~i~~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~ 299 (938)
..+..+.+.+.. .. + ...........+.+.-. ++.+||+||++.-+ .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555444310 00 0 12234445555544322 49999999996522 1
Q ss_pred CCchhhhhhhccCCCCCEEEEEcCChHHHHh----------c-cc-CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhH
Q 035647 300 SKWEPFHNCLMHGLRGSKILVTTRNEKVVRM----------M-ES-TDVISIKELSEQECWWLFKRFAFFGRPPSECEQL 367 (938)
Q Consensus 300 ~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~----------~-~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~ 367 (938)
..+..+...+.....+.++|+|++....... . +. ...+.+.+|+.+|+.+++...+...... ....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID--FKDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC--CCCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC--CCcH
Confidence 2333333333332346799999997653221 1 11 2578999999999999998754211111 1111
Q ss_pred HHHHHHHHhhcCCchhHHHHHHhhhcCCCCHHHHHHHHhhhcccchhhhchhhhhhh-hcc--cCCcHHHHHHHhhhcCC
Q 035647 368 VEIGQKIVGNCKGLPLAAKTIGSLLRFKRTREEWESVLNSEMWWFEELEKYLFAPLL-LSY--NDLPSMIKQCFLYCTVF 444 (938)
Q Consensus 368 ~~~~~~i~~~~~g~PLai~~~a~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~~f~~~a~f 444 (938)
..|++.++|+|+++..++..+....+...|....-. .....+..-+. +.+ ..|++..+..+..+|+-
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g 302 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE------YAKKLILKEFENFLHGREIARKRYLNIMRTLSKC 302 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH------HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH------HHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence 679999999999999998876433333333221100 00001111111 111 16889999999999982
Q ss_pred CCCcccchhHHHHHHH-HcCCccccCCchHHHHHHHHHHHHHhcccCcccccCCCCCeeeEE-ecHHHHHHH
Q 035647 445 PKDYNIEKDELIKLWM-AQGYIEQKGNKEMEIIGQEYFDCLATRSFFQDFVHDDEGTVIGCK-MHDIVHDFA 514 (938)
Q Consensus 445 p~~~~i~~~~li~~w~-a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~-mh~li~~~~ 514 (938)
+ +...+..... ..|. .. .......+++.|.+.++|.... + . |+ .|++++++.
T Consensus 303 ~-----~~~~l~~~~~~~~g~-----~~-~~~~~~~~L~~L~~~gli~~~~----~--~-y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G-----KWSDVKRALELEEGI-----EI-SDSEIYNYLTQLTKHSWIIKEG----E--K-YCPSEPLISLAF 356 (357)
T ss_dssp B-----CHHHHHHHHHHHHCS-----CC-CHHHHHHHHHHHHHTTSEEESS----S--C-EEESSHHHHHHT
T ss_pred C-----CHHHHHHHHHHhcCC-----CC-CHHHHHHHHHHHHhCCCEEecC----C--E-EEecCHHHHHhh
Confidence 1 3444433221 1121 00 1234567899999999997642 1 2 44 578888763
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=5.1e-17 Score=192.43 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=81.9
Q ss_pred hhcCCCCCcceEEEeecCCCCCCCchhh-hccCccEEEEeCC---CCCCCCC-------CCCCCCCccceeeccccC-ce
Q 035647 749 EALQAPPNIESLEMCYYKGKTALPSWVV-LLNKLKKLYLTHC---NNCEIMP-------SLGKLPSLEILQIIGMRS-VK 816 (938)
Q Consensus 749 ~~l~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~~~---~~~~~l~-------~l~~l~~L~~L~L~~~~~-l~ 816 (938)
.....+++|++|++..+.++...+..+. .+++|+.|++++| ...+..| .+..+++|++|+++.|.+ +.
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 3344577888888877776653444444 3788888888743 2333222 134578888888876552 11
Q ss_pred EeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccC--CCcCCCCCCCc
Q 035647 817 RVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKS--LPVDLLRSQKL 894 (938)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L 894 (938)
...... ....+++|++|++++|. +++... +..+..+++|+.|+|++|+ +.. ++.....+++|
T Consensus 452 ~~~~~~-------------~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 452 DLGLSY-------------IGQYSPNVRWMLLGYVG-ESDEGL-MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSL 515 (592)
T ss_dssp HHHHHH-------------HHHSCTTCCEEEECSCC-SSHHHH-HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSC
T ss_pred HHHHHH-------------HHHhCccceEeeccCCC-CCHHHH-HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCcc
Confidence 110000 01247788888888774 332111 1123467888888888886 332 34334457788
Q ss_pred cEEEEcCCc
Q 035647 895 KMLEIYNCP 903 (938)
Q Consensus 895 ~~L~l~~c~ 903 (938)
+.|++++|.
T Consensus 516 ~~L~ls~n~ 524 (592)
T 3ogk_B 516 RYLWVQGYR 524 (592)
T ss_dssp CEEEEESCB
T ss_pred CeeECcCCc
Confidence 888888885
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=2.6e-15 Score=161.08 Aligned_cols=193 Identities=14% Similarity=0.166 Sum_probs=121.8
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCC
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSN 621 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~ 621 (938)
.+++++++.++.+..++ .+..+++|+.|++++|. +..+|. +..+++|++|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~---------------------i~~~~~-~~~l~~L~~L~L~~n~- 96 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ---------------------ITDLAP-LKNLTKITELELSGNP- 96 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC---------------------CCCCGG-GTTCCSCCEEECCSCC-
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc---------------------CCCChh-HccCCCCCEEEccCCc-
Confidence 45555655555555443 35555556665555541 233444 6667777777777777
Q ss_pred CcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCC
Q 035647 622 LRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVT 701 (938)
Q Consensus 622 l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~ 701 (938)
+..+| .+..+++|++|++++|.+..+|. +..+++|++|++..+.... +
T Consensus 97 l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--------~---------------------- 144 (308)
T 1h6u_A 97 LKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN--------I---------------------- 144 (308)
T ss_dssp CSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC--------C----------------------
T ss_pred CCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc--------C----------------------
Confidence 66665 47777777777777777776654 6677777777655433221 0
Q ss_pred ChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCc
Q 035647 702 SIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKL 781 (938)
Q Consensus 702 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L 781 (938)
..+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.+ +|. +..+++|
T Consensus 145 -------~~l~~l~~L~~L~l~~n~l~~-----------------~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L 197 (308)
T 1h6u_A 145 -------SPLAGLTNLQYLSIGNAQVSD-----------------LT-PLANLSKLTTLKADDNKISD-ISP-LASLPNL 197 (308)
T ss_dssp -------GGGGGCTTCCEEECCSSCCCC-----------------CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC
T ss_pred -------ccccCCCCccEEEccCCcCCC-----------------Ch-hhcCCCCCCEEECCCCccCc-Chh-hcCCCCC
Confidence 013345677777777776653 11 15667788888888888776 554 6778888
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeC
Q 035647 782 KKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVG 819 (938)
Q Consensus 782 ~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~ 819 (938)
+.|+|++|..... +.+..+++|+.|++++|+ ++..|
T Consensus 198 ~~L~L~~N~l~~~-~~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 198 IEVHLKNNQISDV-SPLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CEEECTTSCCCBC-GGGTTCTTCCEEEEEEEE-EECCC
T ss_pred CEEEccCCccCcc-ccccCCCCCCEEEccCCe-eecCC
Confidence 8888888864433 347778888888887765 44433
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.7e-14 Score=150.25 Aligned_cols=149 Identities=23% Similarity=0.173 Sum_probs=80.3
Q ss_pred cccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCcccccccccc
Q 035647 610 NLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNL 688 (938)
Q Consensus 610 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L 688 (938)
++++++++++. ++.+|..+. ++|++|++++|.+..+|+ .|.++++|++|++..+.... +
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------i 76 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-----------------L 76 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-----------------C
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-----------------e
Confidence 46677777776 777776553 567777887777776665 46666666666554332111 0
Q ss_pred CCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCC
Q 035647 689 RGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGK 768 (938)
Q Consensus 689 ~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 768 (938)
....+..+++|++|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 77 ------------------~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 77 ------------------PAGIFKELKNLETLWVTDNKLQAL----------------PIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp ------------------CTTTTSSCTTCCEEECCSSCCCCC----------------CTTTTTTCSSCCEEECCSSCCC
T ss_pred ------------------ChhhhcCCCCCCEEECCCCcCCcC----------------CHhHcccccCCCEEECCCCccC
Confidence 001123344555555555554421 0123444556666666666665
Q ss_pred CCCCchhhhccCccEEEEeCCCCCCCCCC-CCCCCCccceeeccc
Q 035647 769 TALPSWVVLLNKLKKLYLTHCNNCEIMPS-LGKLPSLEILQIIGM 812 (938)
Q Consensus 769 ~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~ 812 (938)
...|..+..+++|++|+|++|.....++. ++.+++|++|++++|
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 52233345566666666666644333332 455555555555554
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=4.2e-16 Score=170.21 Aligned_cols=248 Identities=17% Similarity=0.197 Sum_probs=143.9
Q ss_pred cccEEeecCCCCCcccchhhhcc--cCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccc
Q 035647 610 NLQTIEIEECSNLRRLPQRIGKL--VNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNN 687 (938)
Q Consensus 610 ~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~ 687 (938)
.++.++++++. +. |..+..+ ++++.|++++|.+...++.+..+++|++|++..+....
T Consensus 48 ~~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~----------------- 107 (336)
T 2ast_B 48 LWQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV----------------- 107 (336)
T ss_dssp TSSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH-----------------
T ss_pred hheeecccccc-CC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH-----------------
Confidence 36778887776 43 5556666 78888888888777666666677777777654322110
Q ss_pred cCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeec-C
Q 035647 688 LRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYY-K 766 (938)
Q Consensus 688 L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~ 766 (938)
......+..+++|++|++++|.+. ...+..+..+++|++|++++| .
T Consensus 108 -----------------~~~~~~~~~~~~L~~L~L~~~~l~----------------~~~~~~l~~~~~L~~L~L~~~~~ 154 (336)
T 2ast_B 108 -----------------STLHGILSQCSKLQNLSLEGLRLS----------------DPIVNTLAKNSNLVRLNLSGCSG 154 (336)
T ss_dssp -----------------HHHHHHHTTBCCCSEEECTTCBCC----------------HHHHHHHTTCTTCSEEECTTCBS
T ss_pred -----------------HHHHHHHhhCCCCCEEeCcCcccC----------------HHHHHHHhcCCCCCEEECCCCCC
Confidence 011223445567777777766554 234455666777777777777 4
Q ss_pred CCC-CCCchhhhccCccEEEEeCC-CCCCC-CC-CCCCCC-Cccceeecccc-Cce--EeCcccccCCCCCCCCCCcccc
Q 035647 767 GKT-ALPSWVVLLNKLKKLYLTHC-NNCEI-MP-SLGKLP-SLEILQIIGMR-SVK--RVGDEFWGIENHHSSSSSSSIV 838 (938)
Q Consensus 767 ~~~-~lp~~~~~l~~L~~L~L~~~-~~~~~-l~-~l~~l~-~L~~L~L~~~~-~l~--~~~~~~~~~~~~~~~~~~~~~~ 838 (938)
+.. .+|..+..+++|++|++++| ..... ++ .+..++ +|++|++++|. .++ .++. .+.
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---------------~~~ 219 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---------------LVR 219 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---------------HHH
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH---------------HHh
Confidence 442 14555667777777777777 33221 22 355566 77777777764 221 1111 123
Q ss_pred cCCccceeeccCccccccccccccccccCCcccEEeecCCccccC-CCcCCCCCCCccEEEEcCCcchHHhhccCCCCCc
Q 035647 839 AFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKS-LPVDLLRSQKLKMLEIYNCPILKERFKKDVGEDW 917 (938)
Q Consensus 839 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 917 (938)
.+++|++|++++|..+++.. +..+..+++|+.|++++|..+.. ....+.++++|+.|++++| +.. ..+
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~-------~~~ 288 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD-------GTL 288 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT-------TCH
T ss_pred hCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCH-------HHH
Confidence 57777777777775333221 12355677777777777752211 1113556777777777777 211 122
Q ss_pred ccc-cCcCceeeccccccCC
Q 035647 918 AKI-FHIPNIQINGHNVQGG 936 (938)
Q Consensus 918 ~~i-~~i~~i~i~~~~~~~~ 936 (938)
..+ .++|.+.+++|.++|.
T Consensus 289 ~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 289 QLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp HHHHHHSTTSEESCCCSCCT
T ss_pred HHHHhhCcceEEecccCccc
Confidence 333 3477777777777653
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=3.5e-15 Score=157.15 Aligned_cols=210 Identities=18% Similarity=0.084 Sum_probs=135.8
Q ss_pred ccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccc
Q 035647 605 CCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRD 684 (938)
Q Consensus 605 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~ 684 (938)
...+.+|+.|++++|. +..++. +..+++|++|++++|.+..++ .++.+++|++|++..+....
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~-------------- 99 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS-------------- 99 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC--------------
T ss_pred cccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc--------------
Confidence 4456777777777776 666654 777777888888777766653 56677777777654432221
Q ss_pred ccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEee
Q 035647 685 LNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCY 764 (938)
Q Consensus 685 L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 764 (938)
.....+..+++|++|++++|.+.+. .+..+..+++|+.|++++
T Consensus 100 ---------------------~~~~~~~~l~~L~~L~L~~n~l~~~----------------~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 100 ---------------------LPNGVFDKLTNLKELVLVENQLQSL----------------PDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp ---------------------CCTTTTTTCTTCCEEECTTSCCCCC----------------CTTTTTTCTTCCEEECCS
T ss_pred ---------------------cChhHhcCCcCCCEEECCCCcCCcc----------------CHHHhccCCCCCEEECCC
Confidence 0011234456677777777766531 123356677888888888
Q ss_pred cCCCCCCCchhhhccCccEEEEeCCCCCCCCCC-CCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCcc
Q 035647 765 YKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPS-LGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKL 843 (938)
Q Consensus 765 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L 843 (938)
|.+.+..|..+..+++|+.|++++|......+. ++.+++|++|++++|. ++.++. ..+..+++|
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------------~~~~~l~~L 207 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD--------------GVFDRLTSL 207 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT--------------TTTTTCTTC
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCH--------------HHHhCCcCC
Confidence 887773334456788888888888865544443 5778888888888764 333332 224567888
Q ss_pred ceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCC
Q 035647 844 KKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQK 893 (938)
Q Consensus 844 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 893 (938)
+.|++++|+. .+.+|+|+.|++..|.....+|..++.++.
T Consensus 208 ~~L~l~~N~~----------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 208 QYIWLHDNPW----------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSCB----------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEEccCCCc----------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8888888742 135678888888877666677777665543
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=6.2e-16 Score=168.83 Aligned_cols=253 Identities=15% Similarity=0.123 Sum_probs=159.5
Q ss_pred eEEEEEEcCCCCCCcccccCC--CCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCC
Q 035647 544 LRHSILFLGYNASLPVCIYNA--KKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSN 621 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~~~~~l--~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~ 621 (938)
++++++..+.+. +..+..+ ++++.|++.++. +...+..+..+++|++|++++|.
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~---------------------l~~~~~~~~~~~~L~~L~L~~~~- 104 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF---------------------MDQPLAEHFSPFRVQHMDLSNSV- 104 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE---------------------ECSCCCSCCCCBCCCEEECTTCE-
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCcc---------------------ccccchhhccCCCCCEEEccCCC-
Confidence 455666555443 3334444 566666665541 22233345678889999999887
Q ss_pred Ccc--cchhhhcccCCCeEEeCCcccc-ccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCC
Q 035647 622 LRR--LPQRIGKLVNLRHLIFVDVYLD-YMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLG 698 (938)
Q Consensus 622 l~~--lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~ 698 (938)
+.. +|..+..+++|++|++++|.+. ..|..++.+++|++|++..+....
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~---------------------------- 156 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS---------------------------- 156 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC----------------------------
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC----------------------------
Confidence 543 7777888999999999988855 456667778888888765431110
Q ss_pred CCCChhhhhhccCccccccCceEEEec-CCCCCCccccccccccccHHHHhhhcCCCC-CcceEEEeecC--CC-CCCCc
Q 035647 699 NVTSIDEAKTTNLDKKKNLVHLELRFN-KEKDDGAGEAMNLENEVNHEAISEALQAPP-NIESLEMCYYK--GK-TALPS 773 (938)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~--~~-~~lp~ 773 (938)
.......+..+++|++|++++| .+++ ..++..+..++ +|++|++++|. ++ ..+|.
T Consensus 157 -----~~~l~~~~~~~~~L~~L~l~~~~~l~~---------------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 157 -----EFALQTLLSSCSRLDELNLSWCFDFTE---------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp -----HHHHHHHHHHCTTCCEEECCCCTTCCH---------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred -----HHHHHHHHhcCCCCCEEcCCCCCCcCh---------------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 0011222445678888888888 6652 23455566778 99999999984 43 23667
Q ss_pred hhhhccCccEEEEeCCCCC--CCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCc
Q 035647 774 WVVLLNKLKKLYLTHCNNC--EIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGL 851 (938)
Q Consensus 774 ~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 851 (938)
.+..+++|+.|++++|... ..++.++.+++|++|++++|..+.. ..+ ..+..+++|++|++++|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~------------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETL------------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGG------------GGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHH------------HHHhcCCCCCEEeccCc
Confidence 7778999999999999742 3455778889999999988763221 111 12456888999999887
Q ss_pred cccccccccccccccC-CcccEEeecCCccccCCCcCCC
Q 035647 852 YEWEEWEIEKEDIAVM-PQLISLELGSCSKLKSLPVDLL 889 (938)
Q Consensus 852 ~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~ 889 (938)
+.+. .+..+ .+|..|++++|......|..+.
T Consensus 283 --i~~~-----~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 --VPDG-----TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp --SCTT-----CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred --cCHH-----HHHHHHhhCcceEEecccCccccCCccc
Confidence 2211 12223 2366666766644444554443
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=5.8e-15 Score=156.63 Aligned_cols=196 Identities=19% Similarity=0.086 Sum_probs=109.4
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCC
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSN 621 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~ 621 (938)
.+++.+++.++.+..+|..+. ++++.|++++| ......+. .+.++++|++|++++|.
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N--~l~~~~~~------------------~~~~l~~L~~L~L~~n~- 66 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN--LLYTFSLA------------------TLMPYTRLTQLNLDRAE- 66 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS--CCSEEEGG------------------GGTTCTTCCEEECTTSC-
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC--cCCccCHH------------------HhhcCCCCCEEECCCCc-
Confidence 567777777777777776554 57788888776 22222233 34555555555555555
Q ss_pred CcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCC
Q 035647 622 LRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVT 701 (938)
Q Consensus 622 l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~ 701 (938)
++.+|.. +.+++|++|++++|.+..+|..+..+++|++|++..+......
T Consensus 67 l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~----------------------------- 116 (290)
T 1p9a_G 67 LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP----------------------------- 116 (290)
T ss_dssp CCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-----------------------------
T ss_pred cCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC-----------------------------
Confidence 5555442 5555566666665555555555555555555554433222100
Q ss_pred ChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCch-hhhccC
Q 035647 702 SIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSW-VVLLNK 780 (938)
Q Consensus 702 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~-~~~l~~ 780 (938)
...+..+.+|+.|++++|.+... .+..+..+++|+.|+|++|.+.. +|.. +..+++
T Consensus 117 ------~~~~~~l~~L~~L~L~~N~l~~~----------------~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~ 173 (290)
T 1p9a_G 117 ------LGALRGLGELQELYLKGNELKTL----------------PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLEN 173 (290)
T ss_dssp ------SSTTTTCTTCCEEECTTSCCCCC----------------CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTT
T ss_pred ------HHHHcCCCCCCEEECCCCCCCcc----------------ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCC
Confidence 11233344555555555555421 11234456667777777776665 5543 345667
Q ss_pred ccEEEEeCCCCCCCCCCCCCCCCccceeecccc
Q 035647 781 LKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMR 813 (938)
Q Consensus 781 L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 813 (938)
|+.|+|++|.....++.+..+++|+.|+|.+|+
T Consensus 174 L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 777777776655444455666667777776654
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=3.4e-14 Score=149.41 Aligned_cols=185 Identities=24% Similarity=0.287 Sum_probs=130.0
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccch-hhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNK 675 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~ 675 (938)
+..+|..+. .+|+.|++++|. +..+|. .+.++++|++|++++|.+..+|.. +..+++|++|++..+.....
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~---- 100 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL---- 100 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC----
T ss_pred CCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC----
Confidence 344554443 578888888887 777765 588888899999988888888776 47788888887655433220
Q ss_pred ccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCC
Q 035647 676 ACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPP 755 (938)
Q Consensus 676 ~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (938)
....+..+++|+.|++++|.+... .+..+..++
T Consensus 101 -------------------------------~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~l~ 133 (270)
T 2o6q_A 101 -------------------------------PIGVFDQLVNLAELRLDRNQLKSL----------------PPRVFDSLT 133 (270)
T ss_dssp -------------------------------CTTTTTTCSSCCEEECCSSCCCCC----------------CTTTTTTCT
T ss_pred -------------------------------CHhHcccccCCCEEECCCCccCee----------------CHHHhCcCc
Confidence 012244566788888888877641 123467788
Q ss_pred CcceEEEeecCCCCCCCc-hhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCC
Q 035647 756 NIESLEMCYYKGKTALPS-WVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSS 833 (938)
Q Consensus 756 ~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 833 (938)
+|+.|+|++|.+.+ +|. .+..+++|+.|+|++|......+ .+..+++|++|+|++|. ++.++..
T Consensus 134 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~------------ 199 (270)
T 2o6q_A 134 KLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEG------------ 199 (270)
T ss_dssp TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTT------------
T ss_pred CCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHH------------
Confidence 89999999998887 555 46788999999999987655554 37788888888888864 4444432
Q ss_pred CcccccCCccceeeccCcc
Q 035647 834 SSSIVAFPKLKKLTLRGLY 852 (938)
Q Consensus 834 ~~~~~~l~~L~~L~l~~~~ 852 (938)
.+..+++|+.|++++|+
T Consensus 200 --~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 200 --AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --TTTTCTTCCEEECCSSC
T ss_pred --HhccccCCCEEEecCCC
Confidence 23467788888888775
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=5.3e-16 Score=183.78 Aligned_cols=123 Identities=17% Similarity=0.075 Sum_probs=75.8
Q ss_pred CceEEEEEEcCCCCC-Cccccc-CCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCC----------cchhccCCC
Q 035647 542 EELRHSILFLGYNAS-LPVCIY-NAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEE----------LPETCCELC 609 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~-~~~~~~-~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~----------lp~~i~~L~ 609 (938)
.+++++++.++.+.. .+..+. .+++|++|++.+|.......++..+.++++|++|++.. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 567778887776543 223333 57788888888763222333566666788888887432 222334667
Q ss_pred cccEEeecCCC-CCc--ccchhhhcccCCCeEEeCCcc-ccccCccCCCCCCCCcCCce
Q 035647 610 NLQTIEIEECS-NLR--RLPQRIGKLVNLRHLIFVDVY-LDYMPKGIERLTCLRTLSEF 664 (938)
Q Consensus 610 ~L~~L~L~~~~-~l~--~lp~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~ 664 (938)
+|+.|++++|. .+. .++..+.++++|++|++++|. +..+|..+.++++|+.|.+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 88888888775 121 133334556888888888773 55566666677777777543
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=1.4e-14 Score=153.10 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=87.4
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccch-hhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNK 675 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~ 675 (938)
+..+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|.+..+|. .+.++++|++|++..+....
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----- 90 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----- 90 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-----
T ss_pred ccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-----
Confidence 566776554 578999999988 777665 68889999999999988877765 47777777777654432211
Q ss_pred ccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCC
Q 035647 676 ACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPP 755 (938)
Q Consensus 676 ~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 755 (938)
.....+..+++|+.|++++|.+... ....+..++
T Consensus 91 ------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~~~l~ 124 (276)
T 2z62_A 91 ------------------------------LALGAFSGLSSLQKLVAVETNLASL----------------ENFPIGHLK 124 (276)
T ss_dssp ------------------------------ECTTTTTTCTTCCEEECTTSCCCCS----------------TTCCCTTCT
T ss_pred ------------------------------cChhhhcCCccccEEECCCCCcccc----------------CchhcccCC
Confidence 0012234455666666666655421 011244556
Q ss_pred CcceEEEeecCCCC-CCCchhhhccCccEEEEeCCCC
Q 035647 756 NIESLEMCYYKGKT-ALPSWVVLLNKLKKLYLTHCNN 791 (938)
Q Consensus 756 ~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~ 791 (938)
+|+.|++++|.+.. .+|.++..+++|+.|+|++|..
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 66666666666554 2455566666666666666643
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=1.8e-14 Score=152.24 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=130.7
Q ss_pred hhhhhhhhccCcccccC-----CCCcch-hccCCCcccEEeecCCCCCcccch-hhhcccCCCeEEeCCccccccCc-cC
Q 035647 581 AVLRYFFDQLTCLRALR-----TEELPE-TCCELCNLQTIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPK-GI 652 (938)
Q Consensus 581 ~~l~~~~~~l~~Lr~L~-----i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i 652 (938)
..+|..+. ++|++|+ +..+|. .+.++++|++|++++|. +..++. .+.++++|++|++++|.+..++. .+
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 33454443 4678877 566665 78999999999999998 777665 68999999999999999887774 58
Q ss_pred CCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCc
Q 035647 653 ERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGA 732 (938)
Q Consensus 653 ~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 732 (938)
.++++|++|++..+..... ....+..+++|+.|++++|.+...
T Consensus 97 ~~l~~L~~L~l~~n~l~~~-----------------------------------~~~~~~~l~~L~~L~l~~n~l~~~-- 139 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASL-----------------------------------ENFPIGHLKTLKELNVAHNLIQSF-- 139 (276)
T ss_dssp TTCTTCCEEECTTSCCCCS-----------------------------------TTCCCTTCTTCCEEECCSSCCCCC--
T ss_pred cCCccccEEECCCCCcccc-----------------------------------CchhcccCCCCCEEECcCCcccee--
Confidence 8999999987755433220 011245667899999999887631
Q ss_pred cccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCcc----EEEEeCCCCCCCCCCCCCCCCcccee
Q 035647 733 GEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLK----KLYLTHCNNCEIMPSLGKLPSLEILQ 808 (938)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~----~L~L~~~~~~~~l~~l~~l~~L~~L~ 808 (938)
.++..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|......+......+|+.|+
T Consensus 140 -------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~ 206 (276)
T 2z62_A 140 -------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206 (276)
T ss_dssp -------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred -------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence 1345677789999999999999884445677777777 78888887655555444455677777
Q ss_pred ecccc
Q 035647 809 IIGMR 813 (938)
Q Consensus 809 L~~~~ 813 (938)
+++|.
T Consensus 207 L~~n~ 211 (276)
T 2z62_A 207 LDTNQ 211 (276)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 76654
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=2e-14 Score=151.27 Aligned_cols=180 Identities=19% Similarity=0.181 Sum_probs=123.5
Q ss_pred hccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCcccc
Q 035647 604 TCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGM 682 (938)
Q Consensus 604 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L 682 (938)
.+..+++|++|++++|. +..++ .++.+++|++|++++|.+..+|+. ++++++|++|++..+.....
T Consensus 58 ~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------- 124 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL----------- 124 (272)
T ss_dssp TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-----------
T ss_pred ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-----------
Confidence 35667777788888777 66654 577788888888888877777655 57777777776654432210
Q ss_pred ccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEE
Q 035647 683 RDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEM 762 (938)
Q Consensus 683 ~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 762 (938)
....+..+++|+.|++++|.+.+. .+..+..+++|+.|++
T Consensus 125 ------------------------~~~~~~~l~~L~~L~L~~n~l~~~----------------~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 125 ------------------------PDGVFDKLTNLTYLNLAHNQLQSL----------------PKGVFDKLTNLTELDL 164 (272)
T ss_dssp ------------------------CTTTTTTCTTCCEEECCSSCCCCC----------------CTTTTTTCTTCCEEEC
T ss_pred ------------------------CHHHhccCCCCCEEECCCCccCcc----------------CHHHhccCccCCEEEC
Confidence 012244556777888887776631 1234567788999999
Q ss_pred eecCCCCCCCchhhhccCccEEEEeCCCCCCCCCC-CCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCC
Q 035647 763 CYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPS-LGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFP 841 (938)
Q Consensus 763 ~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 841 (938)
++|.+.+..|..+..+++|+.|+|++|.....++. ++.+++|+.|++.+|+- .+.+|
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~----------------------~~~~~ 222 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW----------------------DCTCP 222 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB----------------------CCCTT
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc----------------------cccCc
Confidence 99988873344467889999999999876665553 67889999999988651 13577
Q ss_pred ccceeeccCcccccccc
Q 035647 842 KLKKLTLRGLYEWEEWE 858 (938)
Q Consensus 842 ~L~~L~l~~~~~l~~~~ 858 (938)
+|+.|+++.|.....++
T Consensus 223 ~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTHHHHHHHHHTGGGBB
T ss_pred HHHHHHHHHHhCCCccc
Confidence 88888888775444443
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=1.3e-13 Score=142.20 Aligned_cols=196 Identities=13% Similarity=0.041 Sum_probs=122.4
Q ss_pred cccEEeecCCCCCcccch-hhhcccCCCeEEeCCcc-ccccCc-cCCCCCCCCcCCceE-ecCCCCCCCCccCccccccc
Q 035647 610 NLQTIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVY-LDYMPK-GIERLTCLRTLSEFV-VSGRGKYGNKACNLEGMRDL 685 (938)
Q Consensus 610 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~~~~-~~~~~~~~~~~~~l~~L~~L 685 (938)
+|++|++++|. ++.+|. .++.+++|++|++++|. +..+|+ .|..+++|++|++.. +.... +
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--------------i 96 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--------------I 96 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--------------E
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--------------c
Confidence 56666666666 555554 46666666666666665 666655 356666666666544 22211 0
Q ss_pred cccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcc---eEEE
Q 035647 686 NNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIE---SLEM 762 (938)
Q Consensus 686 ~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~---~L~L 762 (938)
....+..+++|+.|++++|.+.+ ++. +..+++|+ .|++
T Consensus 97 ---------------------~~~~f~~l~~L~~L~l~~n~l~~-----------------lp~-~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 97 ---------------------DPDALKELPLLKFLGIFNTGLKM-----------------FPD-LTKVYSTDIFFILEI 137 (239)
T ss_dssp ---------------------CTTSEECCTTCCEEEEEEECCCS-----------------CCC-CTTCCBCCSEEEEEE
T ss_pred ---------------------CHHHhCCCCCCCEEeCCCCCCcc-----------------ccc-cccccccccccEEEC
Confidence 01123345567777777776653 111 44555565 8888
Q ss_pred eec-CCCCCCCc-hhhhccCcc-EEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCccccc
Q 035647 763 CYY-KGKTALPS-WVVLLNKLK-KLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVA 839 (938)
Q Consensus 763 ~~~-~~~~~lp~-~~~~l~~L~-~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 839 (938)
++| .+.. +|. .+..+++|+ .|++++|......+.....++|+.|++.+|..++.++... +..
T Consensus 138 ~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~--------------~~~ 202 (239)
T 2xwt_C 138 TDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA--------------FGG 202 (239)
T ss_dssp ESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTT--------------TTT
T ss_pred CCCcchhh-cCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH--------------hhc
Confidence 888 6666 554 467788888 8888888655444433334788888888876576665432 346
Q ss_pred C-CccceeeccCccccccccccccccccCCcccEEeecCCcc
Q 035647 840 F-PKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSK 880 (938)
Q Consensus 840 l-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 880 (938)
+ ++|+.|++++| .+..++. ..|++|+.|++.+|..
T Consensus 203 l~~~L~~L~l~~N-~l~~l~~-----~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 203 VYSGPSLLDVSQT-SVTALPS-----KGLEHLKELIARNTWT 238 (239)
T ss_dssp CSBCCSEEECTTC-CCCCCCC-----TTCTTCSEEECTTC--
T ss_pred cccCCcEEECCCC-ccccCCh-----hHhccCceeeccCccC
Confidence 6 88999999887 4455532 2688999999988754
No 93
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.52 E-value=1.1e-14 Score=128.36 Aligned_cols=81 Identities=26% Similarity=0.425 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhh--hhchHHHHHHHHHHHhhhcchhhHHHHhhh
Q 035647 9 FVLEQLISAAVEETKERLRLVKGVGKEVKRLSDNFQAIQAVLIDAEQR--QVKEAQVRRWLEKLKDASYDMEDVLDECNT 86 (938)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~ 86 (938)
|+++.+++|+.+++.+|+....+|+++++.|+++|+.|+++|.+|+.+ +.++++++.|+++||+++||+||+||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999999999987 567899999999999999999999999988
Q ss_pred HHH
Q 035647 87 SRL 89 (938)
Q Consensus 87 ~~~ 89 (938)
+..
T Consensus 81 ~~~ 83 (115)
T 3qfl_A 81 QVD 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=4.2e-14 Score=154.80 Aligned_cols=230 Identities=14% Similarity=0.054 Sum_probs=143.8
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccchh-hhcccCCCeEEeCCccc-cccCcc-CCCCCCCCcCCceEecCCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYL-DYMPKG-IERLTCLRTLSEFVVSGRGKYGN 674 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l-~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~ 674 (938)
++.+|..+ ..+|++|+|++|+ ++.+|.. |.++++|++|++++|.+ ..+|.+ |.++++|..+.......
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~------ 91 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN------ 91 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT------
T ss_pred CCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc------
Confidence 55666655 2467777777776 6777653 67777777777777764 445543 45555554432211110
Q ss_pred CccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCC
Q 035647 675 KACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAP 754 (938)
Q Consensus 675 ~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 754 (938)
+....+..+..+++|+.|++++|.+..... ..+...
T Consensus 92 ----------------------------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~----------------~~~~~~ 127 (350)
T 4ay9_X 92 ----------------------------LLYINPEAFQNLPNLQYLLISNTGIKHLPD----------------VHKIHS 127 (350)
T ss_dssp ----------------------------CCEECTTSBCCCTTCCEEEEEEECCSSCCC----------------CTTCCB
T ss_pred ----------------------------ccccCchhhhhccccccccccccccccCCc----------------hhhccc
Confidence 011112345677888899999888764211 122233
Q ss_pred CCcceEEEeecCCCCCCCc-hhhhc-cCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCC
Q 035647 755 PNIESLEMCYYKGKTALPS-WVVLL-NKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSS 832 (938)
Q Consensus 755 ~~L~~L~L~~~~~~~~lp~-~~~~l-~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 832 (938)
.++..|++.++.....+|. .+..+ ..|+.|+|++|......+......+|+.|.+.++..++.+|...
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~---------- 197 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV---------- 197 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTT----------
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHH----------
Confidence 4566777766433322543 33333 46788888888665555555566778888887766676666432
Q ss_pred CCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcC
Q 035647 833 SSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYN 901 (938)
Q Consensus 833 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 901 (938)
+..+++|+.|++++| .++.++. ..+.+|+.|.+.+|..++.+|. +.++++|+.+++.+
T Consensus 198 ----f~~l~~L~~LdLs~N-~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 ----FHGASGPVILDISRT-RIHSLPS-----YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ----TTTEECCSEEECTTS-CCCCCCS-----SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ----hccCcccchhhcCCC-CcCccCh-----hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 357788888888887 4665542 2577888888888888888884 77788888888864
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=5.8e-16 Score=172.47 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=66.2
Q ss_pred CCcceEEEeecCCC-CCCC---chhhhccCccEEEEeCCCCCC-----CCC-CCCCCCCccceeeccccCc-----eEeC
Q 035647 755 PNIESLEMCYYKGK-TALP---SWVVLLNKLKKLYLTHCNNCE-----IMP-SLGKLPSLEILQIIGMRSV-----KRVG 819 (938)
Q Consensus 755 ~~L~~L~L~~~~~~-~~lp---~~~~~l~~L~~L~L~~~~~~~-----~l~-~l~~l~~L~~L~L~~~~~l-----~~~~ 819 (938)
++|+.|++++|.+. ..+| ..+..+++|+.|+|++|.... ..+ .+..+++|++|+|++|. + ..++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH
Confidence 56666666666654 2233 233355666666666664331 223 45556666666666654 2 1111
Q ss_pred cccccCCCCCCCCCCcccccCCccceeeccCcccccccc--cccccc--ccCCcccEEeecCCcccc----CCCcCC-CC
Q 035647 820 DEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWE--IEKEDI--AVMPQLISLELGSCSKLK----SLPVDL-LR 890 (938)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~--~~l~~L~~L~l~~c~~l~----~lp~~l-~~ 890 (938)
. .+..+++|++|+|++|. +.... ..+..+ +.+++|+.|++++|.... .+|..+ .+
T Consensus 238 ~---------------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 238 I---------------ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp H---------------HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred H---------------HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 1 12355666666666653 22210 011112 235666666666664222 155544 34
Q ss_pred CCCccEEEEcCCc
Q 035647 891 SQKLKMLEIYNCP 903 (938)
Q Consensus 891 l~~L~~L~l~~c~ 903 (938)
+++|+.|++++|+
T Consensus 302 l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 302 MPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTSB
T ss_pred CCCceEEEccCCc
Confidence 5666666666663
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=5.6e-16 Score=172.60 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=125.6
Q ss_pred CCCcccccCCCCceEEEEecCCCcchhh----hhhhhhccCcccccCCCC---------cchhc-------cCCCcccEE
Q 035647 555 ASLPVCIYNAKKLRSLLIYSSLYDLSAV----LRYFFDQLTCLRALRTEE---------LPETC-------CELCNLQTI 614 (938)
Q Consensus 555 ~~~~~~~~~l~~Lr~L~l~~~~~~~~~~----l~~~~~~l~~Lr~L~i~~---------lp~~i-------~~L~~L~~L 614 (938)
..++..+..+++|+.|++++|. .... ++..+..+++|++|++.. +|..+ ..+++|++|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNT--IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSE--ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHhcCCCccEEECCCCC--CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3366677788889999998873 3332 444566777777776332 24333 677888888
Q ss_pred eecCCCCCcc-----cchhhhcccCCCeEEeCCccccc-----cCccCCCC---------CCCCcCCceEecCCCCCCCC
Q 035647 615 EIEECSNLRR-----LPQRIGKLVNLRHLIFVDVYLDY-----MPKGIERL---------TCLRTLSEFVVSGRGKYGNK 675 (938)
Q Consensus 615 ~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L---------~~L~~L~~~~~~~~~~~~~~ 675 (938)
+|++|. ++. +|..+.++++|++|++++|.+.. ++..+..+ ++|++|++..|....
T Consensus 100 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~----- 173 (386)
T 2ca6_A 100 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN----- 173 (386)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-----
T ss_pred ECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-----
Confidence 888887 554 67777888888888888887542 22223333 556665554432211
Q ss_pred ccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhh-hcCCC
Q 035647 676 ACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISE-ALQAP 754 (938)
Q Consensus 676 ~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 754 (938)
.........+..+++|++|++++|.+.. .....+.+ .+..+
T Consensus 174 --------------------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~------------~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 174 --------------------------GSMKEWAKTFQSHRLLHTVKMVQNGIRP------------EGIEHLLLEGLAYC 215 (386)
T ss_dssp --------------------------GGHHHHHHHHHHCTTCCEEECCSSCCCH------------HHHHHHHHTTGGGC
T ss_pred --------------------------HHHHHHHHHHHhCCCcCEEECcCCCCCH------------hHHHHHHHHHhhcC
Confidence 0000111233445577777777776541 00111223 56667
Q ss_pred CCcceEEEeecCCC----CCCCchhhhccCccEEEEeCCCCCCC----CC-CC--CCCCCccceeecccc
Q 035647 755 PNIESLEMCYYKGK----TALPSWVVLLNKLKKLYLTHCNNCEI----MP-SL--GKLPSLEILQIIGMR 813 (938)
Q Consensus 755 ~~L~~L~L~~~~~~----~~lp~~~~~l~~L~~L~L~~~~~~~~----l~-~l--~~l~~L~~L~L~~~~ 813 (938)
++|+.|+|++|.+. ..+|..+..+++|++|+|++|..... ++ .+ +.+++|++|+|++|.
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 77777777777763 33566666777777777777764332 12 22 346777777777655
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=4.1e-14 Score=152.13 Aligned_cols=189 Identities=16% Similarity=0.134 Sum_probs=117.9
Q ss_pred Ccchhc--cCCCcccEEeecCCCCCcc-cc----hhhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCC
Q 035647 600 ELPETC--CELCNLQTIEIEECSNLRR-LP----QRIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGK 671 (938)
Q Consensus 600 ~lp~~i--~~L~~L~~L~L~~~~~l~~-lp----~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~ 671 (938)
..|..+ ..+++|++|++++|. +.. .| ..+..+++|++|++++|.+..+|+ .++.+++|++|++..|...+
T Consensus 106 ~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 183 (310)
T 4glp_A 106 TMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG- 183 (310)
T ss_dssp CCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH-
T ss_pred chhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc-
Confidence 344555 677788888888877 443 22 234567788888888888766653 57778888887766543221
Q ss_pred CCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhh-h
Q 035647 672 YGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISE-A 750 (938)
Q Consensus 672 ~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 750 (938)
...+. ....+..+++|++|++++|.++. ....+. .
T Consensus 184 ----------~~~~~--------------------~~~~~~~l~~L~~L~Ls~N~l~~--------------l~~~~~~l 219 (310)
T 4glp_A 184 ----------ERGLM--------------------AALCPHKFPAIQNLALRNTGMET--------------PTGVCAAL 219 (310)
T ss_dssp ----------HHHHH--------------------TTSCTTSSCCCCSCBCCSSCCCC--------------HHHHHHHH
T ss_pred ----------chhhh--------------------HHHhhhcCCCCCEEECCCCCCCc--------------hHHHHHHH
Confidence 00000 00112345677777777777652 111222 2
Q ss_pred cCCCCCcceEEEeecCCCCCCCchhhhc---cCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCC
Q 035647 751 LQAPPNIESLEMCYYKGKTALPSWVVLL---NKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIEN 827 (938)
Q Consensus 751 l~~~~~L~~L~L~~~~~~~~lp~~~~~l---~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 827 (938)
+..+++|++|+|++|.+.+..|..+..+ ++|++|+|++|.....++.+. ++|++|+|++|. ++.+|.
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~------- 289 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ------- 289 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCC-------
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCch-------
Confidence 3566788888888888877447666655 688888888887654333443 788888888765 433321
Q ss_pred CCCCCCCcccccCCccceeeccCccc
Q 035647 828 HHSSSSSSSIVAFPKLKKLTLRGLYE 853 (938)
Q Consensus 828 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 853 (938)
+..+++|+.|++++|+.
T Consensus 290 ---------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 ---------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ---------TTSCCCCSCEECSSTTT
T ss_pred ---------hhhCCCccEEECcCCCC
Confidence 24678888888888753
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=6.2e-14 Score=148.89 Aligned_cols=169 Identities=22% Similarity=0.231 Sum_probs=102.5
Q ss_pred ccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccc
Q 035647 605 CCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRD 684 (938)
Q Consensus 605 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~ 684 (938)
...+++|+.|++++|. +..+|. +..+++|++|++++|.+..+|+ +.++++|+.|++..+....
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-------------- 104 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-------------- 104 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--------------
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--------------
Confidence 3456777788888776 777754 7777888888888877777766 7777777777655433211
Q ss_pred ccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEee
Q 035647 685 LNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCY 764 (938)
Q Consensus 685 L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 764 (938)
...+..+++|+.|++++|.+.+ .+.+..+++|+.|++++
T Consensus 105 -----------------------~~~l~~l~~L~~L~L~~n~i~~------------------~~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 105 -----------------------LSSLKDLKKLKSLSLEHNGISD------------------INGLVHLPQLESLYLGN 143 (291)
T ss_dssp -----------------------GGGGTTCTTCCEEECTTSCCCC------------------CGGGGGCTTCCEEECCS
T ss_pred -----------------------ChhhccCCCCCEEECCCCcCCC------------------ChhhcCCCCCCEEEccC
Confidence 0113344566666666666553 12344566677777777
Q ss_pred cCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccc
Q 035647 765 YKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLK 844 (938)
Q Consensus 765 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 844 (938)
|.+.+ + ..+..+++|+.|++++|......+ +..+++|++|++++|. ++.++. +..+++|+
T Consensus 144 n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~----------------l~~l~~L~ 203 (291)
T 1h6t_A 144 NKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA----------------LAGLKNLD 203 (291)
T ss_dssp SCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG----------------GTTCTTCS
T ss_pred CcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChh----------------hccCCCCC
Confidence 76665 4 445666777777777665433333 6666666666666653 333221 33566666
Q ss_pred eeeccCc
Q 035647 845 KLTLRGL 851 (938)
Q Consensus 845 ~L~l~~~ 851 (938)
.|++++|
T Consensus 204 ~L~l~~n 210 (291)
T 1h6t_A 204 VLELFSQ 210 (291)
T ss_dssp EEEEEEE
T ss_pred EEECcCC
Confidence 6666665
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=3.2e-15 Score=177.08 Aligned_cols=334 Identities=15% Similarity=0.093 Sum_probs=168.6
Q ss_pred CceEEEEEEcC-CCCC--CcccccCCCCceEEEEecCCCc--chhhhhhhhhccCcccccCCCCcc---------hhccC
Q 035647 542 EELRHSILFLG-YNAS--LPVCIYNAKKLRSLLIYSSLYD--LSAVLRYFFDQLTCLRALRTEELP---------ETCCE 607 (938)
Q Consensus 542 ~~lr~l~l~~~-~~~~--~~~~~~~l~~Lr~L~l~~~~~~--~~~~l~~~~~~l~~Lr~L~i~~lp---------~~i~~ 607 (938)
++++++++.++ .+.. ++....++++|++|++++|... ....++.....+++|++|++.... ..+.+
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 57888888776 3332 3333447888888888876311 122344444567788888754332 22345
Q ss_pred CCcccEEeecCCCCCcccchhhhcccCCCeEEeCCc-------cccccCccCCCCCCCCcCC-ceEecCCCCCCCCccCc
Q 035647 608 LCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDV-------YLDYMPKGIERLTCLRTLS-EFVVSGRGKYGNKACNL 679 (938)
Q Consensus 608 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~-------~l~~lp~~i~~L~~L~~L~-~~~~~~~~~~~~~~~~l 679 (938)
+++|++|++++|..+..+|..+.++++|++|+++.+ .+..++..+.++++|+.|. ...... . .....+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~---~l~~~~ 285 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-A---YLPAVY 285 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-G---GGGGGH
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-h---hHHHHH
Confidence 688888888888657777777888888888885544 2334444555666666552 111000 0 000000
Q ss_pred cccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCC---------Cccccccc----------cc
Q 035647 680 EGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDD---------GAGEAMNL----------EN 740 (938)
Q Consensus 680 ~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---------~~~~~~~~----------~~ 740 (938)
..+++|. .+.+.... +.. ......+..+++|+.|+++.| +... ...+.+.+ ..
T Consensus 286 ~~~~~L~----~L~L~~~~-l~~--~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 286 SVCSRLT----TLNLSYAT-VQS--YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp HHHTTCC----EEECTTCC-CCH--HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred HhhCCCC----EEEccCCC-CCH--HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 1122222 22332222 110 111111233445555555443 1100 00000000 00
Q ss_pred cccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhh-hccCccEEEEe-----CCCCCCCCCC-------CCCCCCccce
Q 035647 741 EVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVV-LLNKLKKLYLT-----HCNNCEIMPS-------LGKLPSLEIL 807 (938)
Q Consensus 741 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~L~-----~~~~~~~l~~-------l~~l~~L~~L 807 (938)
.-....+......+++|+.|.+.++.++...+..+. .+++|+.|+|+ +|...+..|. +..+++|+.|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 001111222222356777776666665442222232 56777777777 3333332221 3456677777
Q ss_pred eeccccCceEeCcccccCCCCCCCCCCcccc-cCCccceeeccCccccccccccccccccCCcccEEeecCCccccC-CC
Q 035647 808 QIIGMRSVKRVGDEFWGIENHHSSSSSSSIV-AFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKS-LP 885 (938)
Q Consensus 808 ~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp 885 (938)
+|++ .+...+. ..+. .+++|+.|++++|. +.+... ..-...+++|+.|++++|+.... ++
T Consensus 438 ~L~~--~l~~~~~--------------~~l~~~~~~L~~L~L~~~~-i~~~~~-~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 438 SLSG--LLTDKVF--------------EYIGTYAKKMEMLSVAFAG-DSDLGM-HHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp ECCS--SCCHHHH--------------HHHHHHCTTCCEEEEESCC-SSHHHH-HHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred eecC--cccHHHH--------------HHHHHhchhccEeeccCCC-CcHHHH-HHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 7754 2221110 0011 37889999998874 322111 11014688999999999875221 22
Q ss_pred cCCCCCCCccEEEEcCCcch
Q 035647 886 VDLLRSQKLKMLEIYNCPIL 905 (938)
Q Consensus 886 ~~l~~l~~L~~L~l~~c~~l 905 (938)
.....+++|+.|++++|+..
T Consensus 500 ~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhCCCCCEEeeeCCCCC
Confidence 33455788999999999763
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=147.37 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=68.1
Q ss_pred hcCCCCCcceEEEeecCCCCC--C--CchhhhccCccEEEEeCCCCCCCCCC-----CCCCCCccceeeccccCceEe-C
Q 035647 750 ALQAPPNIESLEMCYYKGKTA--L--PSWVVLLNKLKKLYLTHCNNCEIMPS-----LGKLPSLEILQIIGMRSVKRV-G 819 (938)
Q Consensus 750 ~l~~~~~L~~L~L~~~~~~~~--l--p~~~~~l~~L~~L~L~~~~~~~~l~~-----l~~l~~L~~L~L~~~~~l~~~-~ 819 (938)
.+..+++|++|+|++|.+.+. + +.++..+++|++|+|++|... .++. ++.+++|++|+|++|. +... |
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p 241 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNS-LRATVN 241 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSC-CCCCCC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCC-CCccch
Confidence 344555566666666654321 1 122245556666666665432 1121 2345566666666544 2222 2
Q ss_pred cccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEE
Q 035647 820 DEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEI 899 (938)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 899 (938)
..+.. ...+++|++|++++| .++.++ .. -+++|+.|++++| .++.+|. +..+++|+.|++
T Consensus 242 ~~~~~------------~~~~~~L~~L~Ls~N-~l~~lp---~~--~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 242 PSAPR------------CMWSSALNSLNLSFA-GLEQVP---KG--LPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp SCCSS------------CCCCTTCCCEECCSS-CCCSCC---SC--CCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEEC
T ss_pred hhHHh------------ccCcCcCCEEECCCC-CCCchh---hh--hcCCCCEEECCCC-cCCCCch-hhhCCCccEEEC
Confidence 21110 112356777777666 344443 21 2367777777776 4666654 556777777777
Q ss_pred cCCc
Q 035647 900 YNCP 903 (938)
Q Consensus 900 ~~c~ 903 (938)
++|+
T Consensus 302 ~~N~ 305 (310)
T 4glp_A 302 DGNP 305 (310)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 7774
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=4.9e-13 Score=146.32 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=64.0
Q ss_pred EEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcch-hccCCCcccEEeecCCCCCcc
Q 035647 546 HSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPE-TCCELCNLQTIEIEECSNLRR 624 (938)
Q Consensus 546 ~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~-~i~~L~~L~~L~L~~~~~l~~ 624 (938)
.+.-.++.+..+|..+ .++++.|+|++|. |+.+|. .|.+|++|++|+|++|...+.
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~---------------------i~~i~~~~f~~l~~L~~L~Ls~N~i~~~ 69 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTK---------------------LRVIQKGAFSGFGDLEKIEISQNDVLEV 69 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCC---------------------CSEECTTSSTTCTTCCEEEEECCTTCCE
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCc---------------------CCCcCHHHHcCCCCCCEEECcCCCCCCc
Confidence 4556667777777765 3578888888762 223343 466677777777777774455
Q ss_pred cchh-hhcccCCCeE-EeCCccccccCc-cCCCCCCCCcCCceEecCCC
Q 035647 625 LPQR-IGKLVNLRHL-IFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 625 lp~~-i~~L~~L~~L-~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~ 670 (938)
+|.. +.++++|.++ .+++|.+..+|+ .|..+++|++|++..+....
T Consensus 70 i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred cChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 5543 5667776653 444555666654 36777777777776665443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=2.7e-13 Score=158.05 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=98.9
Q ss_pred hccCcccccC-----CCCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCC
Q 035647 588 DQLTCLRALR-----TEELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLS 662 (938)
Q Consensus 588 ~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 662 (938)
..|.+|++|+ +..+| .+..|++|+.|+|++|. +..+|. +..+++|++|+|++|.+..+| .+..+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 3444455544 33444 46677777777887776 666666 777777888888777776665 577777777776
Q ss_pred ceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccc
Q 035647 663 EFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEV 742 (938)
Q Consensus 663 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 742 (938)
+..+.... + ..+..+++|+.|+|++|.+.+
T Consensus 116 Ls~N~l~~--------l-----------------------------~~l~~l~~L~~L~Ls~N~l~~------------- 145 (605)
T 1m9s_A 116 LEHNGISD--------I-----------------------------NGLVHLPQLESLYLGNNKITD------------- 145 (605)
T ss_dssp CTTSCCCC--------C-----------------------------GGGGGCTTCSEEECCSSCCCC-------------
T ss_pred ecCCCCCC--------C-----------------------------ccccCCCccCEEECCCCccCC-------------
Confidence 65443322 0 112344556666666665552
Q ss_pred cHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeecccc
Q 035647 743 NHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMR 813 (938)
Q Consensus 743 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 813 (938)
+ ..+..+++|+.|+|++|.+.+ ++. +..+++|+.|+|++|... .++.+..+++|+.|+|++|.
T Consensus 146 ----l-~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 146 ----I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ----C-GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEECCSEE
T ss_pred ----c-hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCC-CChHHccCCCCCEEEccCCc
Confidence 0 235556666666666666665 433 556666666666666433 23556666666666666654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=1.2e-13 Score=160.86 Aligned_cols=171 Identities=22% Similarity=0.218 Sum_probs=133.1
Q ss_pred ccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccc
Q 035647 605 CCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRD 684 (938)
Q Consensus 605 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~ 684 (938)
+..|.+|+.|++++|. +..+|. +..|++|+.|+|++|.+..+|+ +..+++|+.|++..+....
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-------------- 101 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-------------- 101 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC--------------
Confidence 5678899999999998 888874 8999999999999999888877 8888899888776543321
Q ss_pred ccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEee
Q 035647 685 LNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCY 764 (938)
Q Consensus 685 L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 764 (938)
...+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++
T Consensus 102 -----------------------l~~l~~l~~L~~L~Ls~N~l~~------------------l~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 102 -----------------------LSSLKDLKKLKSLSLEHNGISD------------------INGLVHLPQLESLYLGN 140 (605)
T ss_dssp -----------------------CTTSTTCTTCCEEECTTSCCCC------------------CGGGGGCTTCSEEECCS
T ss_pred -----------------------ChhhccCCCCCEEEecCCCCCC------------------CccccCCCccCEEECCC
Confidence 0124556788889998888763 13466788999999999
Q ss_pred cCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccc
Q 035647 765 YKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLK 844 (938)
Q Consensus 765 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 844 (938)
|.+.+ + ..+..+++|+.|+|++|......| +..+++|+.|+|++|. +..++ .+..+++|+
T Consensus 141 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~----------------~l~~l~~L~ 200 (605)
T 1m9s_A 141 NKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLR----------------ALAGLKNLD 200 (605)
T ss_dssp SCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCG----------------GGTTCTTCS
T ss_pred CccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCCh----------------HHccCCCCC
Confidence 99887 5 567889999999999997655545 8889999999998875 44332 145788999
Q ss_pred eeeccCccc
Q 035647 845 KLTLRGLYE 853 (938)
Q Consensus 845 ~L~l~~~~~ 853 (938)
.|+|++|+.
T Consensus 201 ~L~L~~N~l 209 (605)
T 1m9s_A 201 VLELFSQEC 209 (605)
T ss_dssp EEECCSEEE
T ss_pred EEEccCCcC
Confidence 999988753
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=2.5e-11 Score=134.83 Aligned_cols=297 Identities=12% Similarity=0.039 Sum_probs=179.6
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc----cC--CCeEEEEEeCCCC-CH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI----NN--FDKRMWVCVSDNF-DE 250 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~ 250 (938)
+..++||+++++++..++..... ....+.+.|+|++|+||||+|+.+++..... .. ...++|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988854211 2245689999999999999999999862111 11 3457788887766 78
Q ss_pred HHHHHHHHHHhcCCCC--CcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhh-hhhhccCCCCCEEEEEcCChHH
Q 035647 251 FRIAKAIIEALEGSAP--NLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPF-HNCLMHGLRGSKILVTTRNEKV 327 (938)
Q Consensus 251 ~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtr~~~~ 327 (938)
..++..++..+..... ...........+.+.+..++.+|||||++.-....+... ...+.....+..+|+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8888898888843221 122234556677777776666999999954222211222 3333332267789999986532
Q ss_pred H----Hhc-cc-CCeEecCCCChHHHHHHHHHhhcC-CCCCCCchhHHHHHHHHHhhcC---Cchh-HHHHHHhhh--c-
Q 035647 328 V----RMM-ES-TDVISIKELSEQECWWLFKRFAFF-GRPPSECEQLVEIGQKIVGNCK---GLPL-AAKTIGSLL--R- 393 (938)
Q Consensus 328 ~----~~~-~~-~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~a~~l--~- 393 (938)
. ..+ .. ...+.+++++.++..++|...+.. .......+ +..+.|++.++ |.|. |+..+.... .
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 111 11 238999999999999999987531 11111122 33445666666 8887 443333222 1
Q ss_pred --CCCCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhcCCCCCcccchhHHHHHHHHcCCccccCCc
Q 035647 394 --FKRTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFPKDYNIEKDELIKLWMAQGYIEQKGNK 471 (938)
Q Consensus 394 --~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 471 (938)
..-+.+.+...+.... ...+..+++.|+++.+..+..++....+..+. +......-..| +. .
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----P 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----C
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----C
Confidence 1235666666654321 13355667889988888887777611101111 11112222223 11 1
Q ss_pred hHHHHHHHHHHHHHhcccCccccc
Q 035647 472 EMEIIGQEYFDCLATRSFFQDFVH 495 (938)
Q Consensus 472 ~~e~~~~~~l~~L~~~sll~~~~~ 495 (938)
........+++.|...|+++....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 123456788999999999987543
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=2.4e-13 Score=144.34 Aligned_cols=148 Identities=21% Similarity=0.243 Sum_probs=103.6
Q ss_pred ccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccc
Q 035647 605 CCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRD 684 (938)
Q Consensus 605 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~ 684 (938)
+..+++|++|++++|. +..++. +.++++|++|++++|.+..+|. ++.+++|++|++..+.... +
T Consensus 64 ~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~--------~----- 127 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD--------I----- 127 (291)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC--------C-----
T ss_pred HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCC--------C-----
Confidence 5667778888888877 777766 7788888888888887777653 7777777777665443221 0
Q ss_pred ccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEee
Q 035647 685 LNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCY 764 (938)
Q Consensus 685 L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 764 (938)
..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++
T Consensus 128 ------------------------~~l~~l~~L~~L~l~~n~l~~-----------------~-~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 128 ------------------------NGLVHLPQLESLYLGNNKITD-----------------I-TVLSRLTKLDTLSLED 165 (291)
T ss_dssp ------------------------GGGGGCTTCCEEECCSSCCCC-----------------C-GGGGGCTTCSEEECCS
T ss_pred ------------------------hhhcCCCCCCEEEccCCcCCc-----------------c-hhhccCCCCCEEEccC
Confidence 113344577777777777663 1 3456677888888888
Q ss_pred cCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeecccc
Q 035647 765 YKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMR 813 (938)
Q Consensus 765 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 813 (938)
|.+.+ ++. +..+++|+.|+|++|.. +.++.+..+++|+.|++++|+
T Consensus 166 N~l~~-~~~-l~~l~~L~~L~L~~N~i-~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 166 NQISD-IVP-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEEEEE
T ss_pred Ccccc-chh-hcCCCccCEEECCCCcC-CCChhhccCCCCCEEECcCCc
Confidence 88777 555 77788888888888854 345667788888888888765
No 106
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=1.7e-11 Score=136.34 Aligned_cols=297 Identities=14% Similarity=0.051 Sum_probs=178.5
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc---C-CCeEEEEEeCCCCCHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN---N-FDKRMWVCVSDNFDEFRI 253 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~ 253 (938)
+..++||+.+++++..++...- .....+.+.|+|++|+||||+|+.+++...... . -..++|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 3679999999999999885431 123456899999999999999999998521110 1 234678888888888899
Q ss_pred HHHHHHHhcCCCCCc-ccHHHHHHHHHHhhc--CceeeEEeCCCCCCCcC--Cchhhhhhhc--cC---CCCCEEEEEcC
Q 035647 254 AKAIIEALEGSAPNL-GELQSLLQHIYASIV--GKRFFLVLDDVWTDDYS--KWEPFHNCLM--HG---LRGSKILVTTR 323 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~--~~~~l~~~l~--~~---~~gs~iivTtr 323 (938)
+..+++.++...+.. ....+....+...+. +++.+||+|+++.-... ..+.+...+. .. ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 999999997643322 234555666666663 56899999999542211 1222332222 11 34567888887
Q ss_pred ChHHHH----hc-cc--CCeEecCCCChHHHHHHHHHhhcC-CCCCCCchhHHHHHHHHHhhcC---CchhH-HHHHHhh
Q 035647 324 NEKVVR----MM-ES--TDVISIKELSEQECWWLFKRFAFF-GRPPSECEQLVEIGQKIVGNCK---GLPLA-AKTIGSL 391 (938)
Q Consensus 324 ~~~~~~----~~-~~--~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~PLa-i~~~a~~ 391 (938)
...... .+ .. ...+.+++++.++..+++...+.. .......+ +..+.+++.++ |.|.. +..+...
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 653211 11 11 247899999999999999887531 01111122 23445666666 99943 3332222
Q ss_pred hc-----C--CCCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhc-CCCCCcccchhHHHHHHHH--
Q 035647 392 LR-----F--KRTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCT-VFPKDYNIEKDELIKLWMA-- 461 (938)
Q Consensus 392 l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a-~fp~~~~i~~~~li~~w~a-- 461 (938)
.. . .-+.+.+...+.... ...+.-++..|+++.+..+..++ ++-..-.+....+.+....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 21 1 124556655554321 12344567889998888777666 4432223444434333221
Q ss_pred --cCCccccCCchHHHHHHHHHHHHHhcccCcccc
Q 035647 462 --QGYIEQKGNKEMEIIGQEYFDCLATRSFFQDFV 494 (938)
Q Consensus 462 --~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (938)
.| +. ......+..+++.|...|+++...
T Consensus 323 ~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 323 STLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 22 11 112355678899999999998754
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=6.4e-13 Score=137.94 Aligned_cols=61 Identities=26% Similarity=0.261 Sum_probs=32.9
Q ss_pred cCCCCCcceEEEeecCCCCCCCc-hhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccc
Q 035647 751 LQAPPNIESLEMCYYKGKTALPS-WVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGM 812 (938)
Q Consensus 751 l~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 812 (938)
+..+++|+.|+|++|.+.+ +|. .+..+++|+.|+|++|.....++ .++.+++|++|+|++|
T Consensus 103 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 3445556666666665555 333 23455666666666664443333 3555566666666554
No 108
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=3e-11 Score=134.51 Aligned_cols=299 Identities=15% Similarity=0.067 Sum_probs=181.8
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccC-CCeEEEEEeCCCCCHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINN-FDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 256 (938)
+..++||+.+++++.+++...........+.+.|+|++|+||||+|+.+++. .... -..++|+++....+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3679999999999999886421101112348999999999999999999985 2222 135678888888788899999
Q ss_pred HHHHhcCCCCC-cccHHHHHHHHHHhhc--CceeeEEeCCCCCCCcCCchhhhhhhccCC----CCCEEEEEcCChHHHH
Q 035647 257 IIEALEGSAPN-LGELQSLLQHIYASIV--GKRFFLVLDDVWTDDYSKWEPFHNCLMHGL----RGSKILVTTRNEKVVR 329 (938)
Q Consensus 257 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~~~~ 329 (938)
++..++...+. ..........+...+. +++.+||+|+++.-+......+...+.... .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99988754332 2234455556655554 568899999996543333333444332211 3667888887664333
Q ss_pred hcc-------cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhc---------CCchhHHHHHHhhhc
Q 035647 330 MME-------STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNC---------KGLPLAAKTIGSLLR 393 (938)
Q Consensus 330 ~~~-------~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~a~~l~ 393 (938)
.+. ....+.+.+++.++..+++...+...... ..-..+....|++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 12379999999999999998875321000 011234556688888 788755444333221
Q ss_pred ------CC--CCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhcCCC---CCcccchhHHHHHHHH-
Q 035647 394 ------FK--RTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFP---KDYNIEKDELIKLWMA- 461 (938)
Q Consensus 394 ------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp---~~~~i~~~~li~~w~a- 461 (938)
.. -+.+......... ....+.-.+..|+.+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 1233333322211 112233445678888888888777654 2214555566554433
Q ss_pred ---cCCccccCCchHHHHHHHHHHHHHhcccCccccc
Q 035647 462 ---QGYIEQKGNKEMEIIGQEYFDCLATRSFFQDFVH 495 (938)
Q Consensus 462 ---~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~ 495 (938)
.|... . .......++++|...+++.....
T Consensus 322 ~~~~~~~~----~-~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 322 CEEYGERP----R-VHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHTTCCC----C-CHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCCC----C-CHHHHHHHHHHHHhCCCeEEeee
Confidence 22111 1 12346678999999999987653
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=3.6e-14 Score=156.25 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=31.4
Q ss_pred hhhhhhhhhccCcccccC-----CCCcc-----hhccCCC-cccEEeecCCCCCccc-chhhhcc-----cCCCeEEeCC
Q 035647 580 SAVLRYFFDQLTCLRALR-----TEELP-----ETCCELC-NLQTIEIEECSNLRRL-PQRIGKL-----VNLRHLIFVD 642 (938)
Q Consensus 580 ~~~l~~~~~~l~~Lr~L~-----i~~lp-----~~i~~L~-~L~~L~L~~~~~l~~l-p~~i~~L-----~~L~~L~l~~ 642 (938)
.+.+|..+...++|++|+ ++..+ ..+..++ +|++|+|++|. ++.. +..+..+ ++|++|++++
T Consensus 11 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcC
Confidence 344455444444455555 22222 3344455 55555555554 3332 3334433 5555555555
Q ss_pred ccccc
Q 035647 643 VYLDY 647 (938)
Q Consensus 643 ~~l~~ 647 (938)
|.+..
T Consensus 90 n~l~~ 94 (362)
T 3goz_A 90 NFLSY 94 (362)
T ss_dssp SCGGG
T ss_pred CcCCh
Confidence 55443
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=4.9e-14 Score=155.12 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=61.3
Q ss_pred EEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhhh----hhhhccC-cccccCCC-----Cc-chhccCC-----Cc
Q 035647 548 ILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVLR----YFFDQLT-CLRALRTE-----EL-PETCCEL-----CN 610 (938)
Q Consensus 548 ~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~----~~~~~l~-~Lr~L~i~-----~l-p~~i~~L-----~~ 610 (938)
.+..+.+... |..+...++|+.|++++|. .....+ ..+..++ +|++|++. .. +..+..+ ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3444555543 3334445558888888873 222222 6677777 78888733 22 3344443 88
Q ss_pred ccEEeecCCCCCcccc-hhh----hcc-cCCCeEEeCCccccccCc
Q 035647 611 LQTIEIEECSNLRRLP-QRI----GKL-VNLRHLIFVDVYLDYMPK 650 (938)
Q Consensus 611 L~~L~L~~~~~l~~lp-~~i----~~L-~~L~~L~l~~~~l~~lp~ 650 (938)
|++|+|++|. ++..+ ..+ ..+ ++|++|++++|.+...+.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 8888888888 55433 333 334 788888888888766543
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=7.8e-13 Score=152.24 Aligned_cols=189 Identities=17% Similarity=0.141 Sum_probs=122.8
Q ss_pred cccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccC
Q 035647 610 NLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLR 689 (938)
Q Consensus 610 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 689 (938)
+|+.|++++|. ++.+|..+ +++|++|++++|.+..+| +.+++|++|++..|.... +.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--------------ip--- 116 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST--------------LP--- 116 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--------------CC---
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--------------cc---
Confidence 88999999987 78888876 378999999999988888 456778877765543221 00
Q ss_pred CeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCC
Q 035647 690 GSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKT 769 (938)
Q Consensus 690 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 769 (938)
. +.. +|+.|++++|.+++ ++. .+++|+.|+|++|.+.+
T Consensus 117 -------------------~-l~~--~L~~L~Ls~N~l~~-----------------lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 117 -------------------E-LPA--SLKHLDVDNNQLTM-----------------LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp -------------------C-CCT--TCCEEECCSSCCSC-----------------CCC---CCTTCCEEECCSSCCSC
T ss_pred -------------------h-hhc--CCCEEECCCCcCCC-----------------CCC---cCccccEEeCCCCccCc
Confidence 0 111 67788888887763 122 46788888888888877
Q ss_pred CCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeecc
Q 035647 770 ALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLR 849 (938)
Q Consensus 770 ~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 849 (938)
+|. .+++|+.|+|++|.... +|.++ ++|+.|+|++|. ++.+|. +.. + -....+.|+.|+++
T Consensus 155 -lp~---~l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls~N~-L~~lp~-~~~--~--------L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 155 -LPE---LPTSLEVLSVRNNQLTF-LPELP--ESLEALDVSTNL-LESLPA-VPV--R--------NHHSEETEIFFRCR 215 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSC-CSSCCC-CC------------------CCEEEECC
T ss_pred -CCC---cCCCcCEEECCCCCCCC-cchhh--CCCCEEECcCCC-CCchhh-HHH--h--------hhcccccceEEecC
Confidence 776 57788888888886554 44454 788888888764 555543 210 0 00122334777777
Q ss_pred CccccccccccccccccCCcccEEeecCCccccCCCc
Q 035647 850 GLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPV 886 (938)
Q Consensus 850 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 886 (938)
+| .++.++ ..+..+++|+.|++++|+....+|.
T Consensus 216 ~N-~l~~lp---~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 216 EN-RITHIP---ENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SS-CCCCCC---GGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CC-cceecC---HHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 76 344443 3345677777777777764444443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=2.7e-12 Score=127.63 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=108.0
Q ss_pred ccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCC
Q 035647 712 DKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNN 791 (938)
Q Consensus 712 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 791 (938)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++|..
T Consensus 41 ~~l~~L~~L~l~~n~i~~-----------------l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-----------------LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-----------------CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTC
T ss_pred hhcCCccEEeccCCCccC-----------------hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCcc
Confidence 456788888888887763 12 35667788888888886654 34677888888888888875
Q ss_pred CC-CCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcc
Q 035647 792 CE-IMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQL 870 (938)
Q Consensus 792 ~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L 870 (938)
.. .++.++.+++|++|++++|. +... .+..+..+++|++|++++|..+.+++ .+..+++|
T Consensus 101 ~~~~~~~l~~l~~L~~L~Ls~n~-i~~~--------------~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L 161 (197)
T 4ezg_A 101 TSDKIPNLSGLTSLTLLDISHSA-HDDS--------------ILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPEL 161 (197)
T ss_dssp BGGGSCCCTTCTTCCEEECCSSB-CBGG--------------GHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSC
T ss_pred CcccChhhcCCCCCCEEEecCCc-cCcH--------------hHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCC
Confidence 54 45578888888888888865 2221 11224578888888888886566654 25678888
Q ss_pred cEEeecCCccccCCCcCCCCCCCccEEEEcCCc
Q 035647 871 ISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCP 903 (938)
Q Consensus 871 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 903 (938)
+.|++++|. +..++ .+..+++|+.|++++|+
T Consensus 162 ~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 162 KSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred CEEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence 888888874 66676 67778888888888884
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=5.5e-12 Score=130.83 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=104.1
Q ss_pred cccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCC
Q 035647 715 KNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEI 794 (938)
Q Consensus 715 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~ 794 (938)
.+++.|++++|.+.+. .+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.....
T Consensus 35 ~~l~~L~L~~n~l~~~----------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 35 ADTEKLDLQSTGLATL----------------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp TTCCEEECTTSCCCCC----------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCEEEccCCCcCcc----------------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 5677777777766531 123466677888888888887774455567788888888888865554
Q ss_pred CC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEE
Q 035647 795 MP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISL 873 (938)
Q Consensus 795 l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L 873 (938)
.+ .+..+++|++|+|++|. ++.++.. .+..+++|++|++++| .+..++ +..+..+++|+.|
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~--------------~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L 160 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQ-LKSLPSG--------------VFDRLTKLKELRLNTN-QLQSIP--AGAFDKLTNLQTL 160 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTT--------------TTTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEE
T ss_pred ChhHhcccCCCCEEEcCCCc-CCCcChh--------------HhccCCcccEEECcCC-cCCccC--HHHcCcCcCCCEE
Confidence 44 45777888888887754 4444322 2346778888888877 455443 2235677888888
Q ss_pred eecCCccccCCC-cCCCCCCCccEEEEcCCcc
Q 035647 874 ELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 874 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 904 (938)
++++|. +..+| ..+..+++|+.|++++|+-
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCce
Confidence 888774 55555 3567778888888888754
No 114
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=3.7e-11 Score=133.61 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=173.4
Q ss_pred cCCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccC---CCeEEEEEeCCCCCHHHH
Q 035647 177 NVSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINN---FDKRMWVCVSDNFDEFRI 253 (938)
Q Consensus 177 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~ 253 (938)
.+..|+||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++. .... -..++|+++....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 346799999999999998864211 224568999999999999999999985 2222 235778887776677778
Q ss_pred HHHHHHHhcCCCCC-cccHHHHHHHHHHhhc--CceeeEEeCCCCCCC----cCCchhhhhhhcc-CCCCCEEEEEcCCh
Q 035647 254 AKAIIEALEGSAPN-LGELQSLLQHIYASIV--GKRFFLVLDDVWTDD----YSKWEPFHNCLMH-GLRGSKILVTTRNE 325 (938)
Q Consensus 254 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~ 325 (938)
+..++..++...+. ..+..+....+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88887777643322 2234455556666554 458999999995421 2222333332321 23355678888765
Q ss_pred HHHHhcc-----c--CCeEecCCCChHHHHHHHHHhhcCC-CCCCCchhHHHHHHHHHhhcC---CchhHHHHHHhhh-c
Q 035647 326 KVVRMME-----S--TDVISIKELSEQECWWLFKRFAFFG-RPPSECEQLVEIGQKIVGNCK---GLPLAAKTIGSLL-R 393 (938)
Q Consensus 326 ~~~~~~~-----~--~~~~~l~~L~~~ea~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~PLai~~~a~~l-~ 393 (938)
.....+. . ...+.+++++.++..+++...+... ...... .+..+.+++.++ |.|..+..+.... .
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322221 1 2489999999999999998764211 111112 334455666666 9998443332222 1
Q ss_pred -----C--CCCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhcCCCC-C-cccchhHHHHHHH----
Q 035647 394 -----F--KRTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCTVFPK-D-YNIEKDELIKLWM---- 460 (938)
Q Consensus 394 -----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a~fp~-~-~~i~~~~li~~w~---- 460 (938)
. .-+.+.+...+.... ...+.-.+..+|+..+..+..++...+ + ..+....+.+...
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 124455554443321 123455667888888887777764221 1 1233333322221
Q ss_pred HcCCccccCCchHHHHHHHHHHHHHhcccCcccc
Q 035647 461 AQGYIEQKGNKEMEIIGQEYFDCLATRSFFQDFV 494 (938)
Q Consensus 461 a~g~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 494 (938)
..| +.. ........+++.|...++++...
T Consensus 321 ~~g-~~~----~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLG-VEA----VTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHT-CCC----CCHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcC-CCC----CCHHHHHHHHHHHHhCCCEEEEe
Confidence 112 111 11234567899999999998653
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=2.1e-12 Score=148.70 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=117.1
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCcc
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKAC 677 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 677 (938)
+..+|..+ +++|++|+|++|. ++.+| +.+++|++|++++|.+..+|. +.+ +|++|++..|....
T Consensus 71 L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~------- 134 (571)
T 3cvr_A 71 LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM------- 134 (571)
T ss_dssp CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-------
T ss_pred CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-------
Confidence 34456555 3689999999988 78888 457899999999999888887 655 78777766543322
Q ss_pred CccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCc
Q 035647 678 NLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNI 757 (938)
Q Consensus 678 ~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 757 (938)
++ . .+++|+.|++++|.+++ ++. .+++|
T Consensus 135 -------lp----------------------~---~l~~L~~L~Ls~N~l~~-----------------lp~---~l~~L 162 (571)
T 3cvr_A 135 -------LP----------------------E---LPALLEYINADNNQLTM-----------------LPE---LPTSL 162 (571)
T ss_dssp -------CC----------------------C---CCTTCCEEECCSSCCSC-----------------CCC---CCTTC
T ss_pred -------CC----------------------C---cCccccEEeCCCCccCc-----------------CCC---cCCCc
Confidence 00 0 23578888888887763 111 35788
Q ss_pred ceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCc-------cceeeccccCceEeCcccccCCCCCC
Q 035647 758 ESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSL-------EILQIIGMRSVKRVGDEFWGIENHHS 830 (938)
Q Consensus 758 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L-------~~L~L~~~~~l~~~~~~~~~~~~~~~ 830 (938)
+.|+|++|.+.+ +|. +. ++|+.|+|++|... .+|.+.. +| +.|+|++|. ++.+|..
T Consensus 163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~--------- 225 (571)
T 3cvr_A 163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPAVPV--RNHHSEETEIFFRCRENR-ITHIPEN--------- 225 (571)
T ss_dssp CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCCCC----------CCEEEECCSSC-CCCCCGG---------
T ss_pred CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhhHHH--hhhcccccceEEecCCCc-ceecCHH---------
Confidence 999999998887 887 54 88999999988655 4444443 66 888888865 5555543
Q ss_pred CCCCcccccCCccceeeccCcccccc
Q 035647 831 SSSSSSIVAFPKLKKLTLRGLYEWEE 856 (938)
Q Consensus 831 ~~~~~~~~~l~~L~~L~l~~~~~l~~ 856 (938)
+..+++|+.|+|++|+....
T Consensus 226 ------l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 226 ------ILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ------GGGSCTTEEEECCSSSCCHH
T ss_pred ------HhcCCCCCEEEeeCCcCCCc
Confidence 34688899999998854443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=4.1e-12 Score=126.36 Aligned_cols=154 Identities=14% Similarity=0.198 Sum_probs=118.6
Q ss_pred CCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCC
Q 035647 754 PPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSS 833 (938)
Q Consensus 754 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 833 (938)
+++|+.|++++|.+.. +| .+..+++|++|++++| ....++.+..+++|++|++++|. ++. ..
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~--------------~~ 104 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTS--------------DK 104 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBG--------------GG
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCc--------------cc
Confidence 4689999999999986 88 6889999999999999 55667788999999999999865 322 11
Q ss_pred CcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCC
Q 035647 834 SSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDV 913 (938)
Q Consensus 834 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~ 913 (938)
+..+..+++|++|++++|. +.... +..+..+++|+.|++++|..++.+| .+.++++|+.|++++|.- .. .
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~-i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-----~~-~ 174 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSA-HDDSI--LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-----HD-Y 174 (197)
T ss_dssp SCCCTTCTTCCEEECCSSB-CBGGG--HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-----CC-C
T ss_pred ChhhcCCCCCCEEEecCCc-cCcHh--HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-----cC-h
Confidence 2235689999999999984 33311 3346789999999999997688888 588899999999999942 21 1
Q ss_pred CCCcccccCcCceeeccccccCC
Q 035647 914 GEDWAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 914 ~~~~~~i~~i~~i~i~~~~~~~~ 936 (938)
..+..++++..+.+.+|.|.+.
T Consensus 175 -~~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 175 -RGIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp -TTGGGCSSCCEEEECBC-----
T ss_pred -HHhccCCCCCEEEeeCcccCCc
Confidence 2566778888999999998763
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=1.1e-12 Score=136.89 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=118.4
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCcc
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKAC 677 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 677 (938)
+..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|+ ++.+++|+.|++..+....
T Consensus 31 i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~------- 99 (263)
T 1xeu_A 31 VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN------- 99 (263)
T ss_dssp TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-------
T ss_pred ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-------
Confidence 55666 57788899999999987 88888 68889999999999999888887 8888888888776554322
Q ss_pred CccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCc
Q 035647 678 NLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNI 757 (938)
Q Consensus 678 ~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 757 (938)
+. .+.. .+|+.|++++|.+.+ .+.+..+++|
T Consensus 100 -------l~-----------------------~~~~-~~L~~L~L~~N~l~~------------------~~~l~~l~~L 130 (263)
T 1xeu_A 100 -------LN-----------------------GIPS-ACLSRLFLDNNELRD------------------TDSLIHLKNL 130 (263)
T ss_dssp -------CT-----------------------TCCC-SSCCEEECCSSCCSB------------------SGGGTTCTTC
T ss_pred -------cC-----------------------cccc-CcccEEEccCCccCC------------------ChhhcCcccc
Confidence 00 0111 578888888888763 1347778899
Q ss_pred ceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeecccc
Q 035647 758 ESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMR 813 (938)
Q Consensus 758 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 813 (938)
+.|++++|.+.+ +| .+..+++|+.|+|++|..... +.+..+++|+.|++++|.
T Consensus 131 ~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 131 EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 999999999887 65 577899999999999865544 778888899999998865
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=4.1e-14 Score=163.97 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=85.8
Q ss_pred CcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCc
Q 035647 756 NIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSS 835 (938)
Q Consensus 756 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 835 (938)
.|+.|+|++|.+.+ +|. +..+++|+.|+|++|.....++.++.+++|+.|+|++|. ++.+|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp---------------- 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD---------------- 502 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG----------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc----------------
Confidence 47888888888877 777 778888888888888665444467788888888888764 44333
Q ss_pred ccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCC----CCCCccEEEE
Q 035647 836 SIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLL----RSQKLKMLEI 899 (938)
Q Consensus 836 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l 899 (938)
.+..+++|+.|+|++| .+..+.. |..+..+++|+.|++++|+ +..+|.... .+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N-~l~~~~~-p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNN-RLQQSAA-IQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSS-CCCSSST-TGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCC-CCCCCCC-cHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 2457888888888887 3444420 3446788888899998885 655554432 2678887753
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1.4e-13 Score=159.45 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.6
Q ss_pred cCCCCceEEEEecCCCcchhhhhhhhhccCcccccC
Q 035647 562 YNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR 597 (938)
Q Consensus 562 ~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~ 597 (938)
..+++|+.|+|++| .+..+|..++++++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n---~L~~Lp~~i~~l~~L~~L~ 378 (567)
T 1dce_A 346 ATDEQLFRCELSVE---KSTVLQSELESCKELQELE 378 (567)
T ss_dssp STTTTSSSCCCCHH---HHHHHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCChh---hHHhhHHHHHHHHHHHHhc
Confidence 46777888888774 4567788888888888776
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=3.2e-12 Score=133.31 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=118.8
Q ss_pred CCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCcccccccc
Q 035647 607 ELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLN 686 (938)
Q Consensus 607 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 686 (938)
++.++..++++++. +..++ .+..+++|++|++++|.+..+| ++..+++|++|++..+.... +
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-----------~---- 78 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-----------L---- 78 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-----------C----
T ss_pred HHHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-----------C----
Confidence 35567778888887 88888 5889999999999999998887 78888888888776543322 0
Q ss_pred ccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecC
Q 035647 687 NLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYK 766 (938)
Q Consensus 687 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 766 (938)
.. +..+++|+.|++++|.+.+. + .+.. ++|+.|++++|.
T Consensus 79 ---------------------~~-l~~l~~L~~L~L~~N~l~~l-----------------~-~~~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 79 ---------------------SP-LKDLTKLEELSVNRNRLKNL-----------------N-GIPS-ACLSRLFLDNNE 117 (263)
T ss_dssp ---------------------GG-GTTCSSCCEEECCSSCCSCC-----------------T-TCCC-SSCCEEECCSSC
T ss_pred ---------------------hh-hccCCCCCEEECCCCccCCc-----------------C-cccc-CcccEEEccCCc
Confidence 01 44556788888888877641 1 1222 778888888888
Q ss_pred CCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCcccee
Q 035647 767 GKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKL 846 (938)
Q Consensus 767 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 846 (938)
+.+ +| .+..+++|+.|+|++|... .++.++.+++|+.|++++|. +..+ ..+..+++|+.|
T Consensus 118 l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~~l~~l~~L~~L~L~~N~-i~~~----------------~~l~~l~~L~~L 177 (263)
T 1xeu_A 118 LRD-TD-SLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNE-ITNT----------------GGLTRLKKVNWI 177 (263)
T ss_dssp CSB-SG-GGTTCTTCCEEECTTSCCC-BCGGGGGCTTCCEEECTTSC-CCBC----------------TTSTTCCCCCEE
T ss_pred cCC-Ch-hhcCcccccEEECCCCcCC-CChHHccCCCCCEEECCCCc-Ccch----------------HHhccCCCCCEE
Confidence 877 54 4778888888888888643 34567778888888887765 3322 124567778888
Q ss_pred eccCcc
Q 035647 847 TLRGLY 852 (938)
Q Consensus 847 ~l~~~~ 852 (938)
++++|+
T Consensus 178 ~l~~N~ 183 (263)
T 1xeu_A 178 DLTGQK 183 (263)
T ss_dssp EEEEEE
T ss_pred eCCCCc
Confidence 887764
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=2.4e-11 Score=122.09 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=30.9
Q ss_pred cEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCce
Q 035647 612 QTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEF 664 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~ 664 (938)
+.++.+++. +..+|..+ .++|++|++++|.+..+|.. +..+++|++|++.
T Consensus 10 ~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 60 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG 60 (208)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CEEEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECC
Confidence 456666665 66676544 45777777777776666554 4555555555443
No 122
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.1e-10 Score=120.54 Aligned_cols=197 Identities=13% Similarity=0.127 Sum_probs=118.6
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++||+.+++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+.. ..+.. ... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHHh
Confidence 469999999999999986432 2348899999999999999999875221111100 00000 000 00000
Q ss_pred HHh-----cCCCCCcccHHHHHHHHHHhh-----cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHH
Q 035647 259 EAL-----EGSAPNLGELQSLLQHIYASI-----VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVV 328 (938)
Q Consensus 259 ~~l-----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 328 (938)
... ..........+. ...+.+.+ .+++.+||+||++.-+...++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 000001111111 12222222 3567899999996544455666766666555678899988764321
Q ss_pred -Hh-cccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 329 -RM-MESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 329 -~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
.. ......+.+.+++.++..+++...+........ .+....|++.|+|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 122468999999999999999887754322111 3456679999999999888776544
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=3.1e-12 Score=153.08 Aligned_cols=124 Identities=19% Similarity=0.088 Sum_probs=60.3
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCC--cchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEE
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLY--DLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~--~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L 614 (938)
..++++++..+.+...+..+.....|+.+.+..... +.....+..+..+..|++|+ +..+|..+.+|++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 557788887777666555554555555554433210 12234566777777888777 55677777788888888
Q ss_pred eecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEe
Q 035647 615 EIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVV 666 (938)
Q Consensus 615 ~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 666 (938)
+|++|. +..+|..|++|++|++|+|++|.+..+|..|++|++|++|++..|
T Consensus 253 ~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 253 YLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp BCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS
T ss_pred EeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC
Confidence 888887 667887788888888888888887788888888888887776554
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.15 E-value=5.7e-11 Score=120.20 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=80.5
Q ss_pred cEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCC
Q 035647 612 QTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRG 690 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 690 (938)
+.++++++. ++.+|..+. ++|+.|++++|.+..+|+ .|..+++|+.|++..+....
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-------------------- 70 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-------------------- 70 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence 456666665 666665543 566666666666666554 35555566555544332211
Q ss_pred eEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCC
Q 035647 691 SLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTA 770 (938)
Q Consensus 691 ~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 770 (938)
..+..+..+.+|+.|++++|.+... ....+..+++|+.|+|++|.+.+.
T Consensus 71 ---------------~~~~~~~~l~~L~~L~Ls~N~l~~l----------------~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 71 ---------------LAPDAFQGLRSLNSLVLYGNKITEL----------------PKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp ---------------ECTTTTTTCSSCCEEECCSSCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ---------------cCHHHhhCCcCCCEEECCCCcCCcc----------------CHhHccCCCCCCEEECCCCCCCEe
Confidence 0012233444555555555555421 012244556666666666666663
Q ss_pred CCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeecccc
Q 035647 771 LPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMR 813 (938)
Q Consensus 771 lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 813 (938)
.|..+..+++|+.|+|++|......+ .+..+++|+.|+|.+|+
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 34556666666666666665444443 35556666666666544
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=2.2e-10 Score=116.65 Aligned_cols=131 Identities=21% Similarity=0.222 Sum_probs=106.7
Q ss_pred CCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCC
Q 035647 754 PPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSS 832 (938)
Q Consensus 754 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 832 (938)
+++|+.|+|++|.+.+..|..+..+++|+.|+|++|......+ .+..+++|++|+|++|. ++.++..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~----------- 106 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSA----------- 106 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-----------
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChh-----------
Confidence 4899999999999998557788899999999999998655444 36899999999999875 5554432
Q ss_pred CCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCcc
Q 035647 833 SSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 833 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 904 (938)
.+..+++|+.|++++| .+..+ +..+..+++|+.|++++| .+..+| ..+..+++|+.|++.+||-
T Consensus 107 ---~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 ---VFDRLVHLKELFMCCN-KLTEL---PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ---TTTTCTTCCEEECCSS-CCCSC---CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ---HhCcchhhCeEeccCC-ccccc---CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 2457999999999998 45555 344678999999999998 577777 4578899999999999974
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=117.67 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCCcceEEEeecCCCCCCC-chhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCC
Q 035647 754 PPNIESLEMCYYKGKTALP-SWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSS 831 (938)
Q Consensus 754 ~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 831 (938)
++.++.|+|++|.+.+..| ..+..+++|+.|+|++|......+ .++.+++|++|+|++|. ++.++..
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---------- 99 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHK---------- 99 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGG----------
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHh----------
Confidence 3567899999999988323 347899999999999998666655 68999999999999865 4444332
Q ss_pred CCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCC-CcCCCCCCCccEEEEcCCcc
Q 035647 832 SSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSL-PVDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 832 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~ 904 (938)
.+..+++|++|++++|. +..+. +..+..+++|+.|++++|. ++.+ |..+..+++|+.|++++||-
T Consensus 100 ----~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 100 ----MFKGLESLKTLMLRSNR-ITCVG--NDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ----GGTTCSSCCEEECTTSC-CCCBC--TTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ----HhcCCcCCCEEECCCCc-CCeEC--HhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 24689999999999984 44443 3447789999999999985 5555 78889999999999999974
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=4.9e-10 Score=113.87 Aligned_cols=185 Identities=15% Similarity=0.042 Sum_probs=115.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 257 (938)
..++||+..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 46899999999999998643 223489999999999999999987521 1122 223444444433322222111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHH-HHh-cccCC
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKV-VRM-MESTD 335 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~-~~~-~~~~~ 335 (938)
.. +.... ....+++.+||+||++.-.....+.+...+.....+.++|+||+.... ... .....
T Consensus 90 ~~-~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KE-FARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HH-HHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HH-Hhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11 11000 001256889999999654444455566666555667789998886531 111 12234
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 336 VISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 336 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
.+.+.+++.++..+++.+.+...+... ..+....|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999999988764322111 13455678899999998655443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.13 E-value=7.8e-11 Score=113.72 Aligned_cols=134 Identities=21% Similarity=0.251 Sum_probs=106.4
Q ss_pred CCCCCcceEEEeecCCC-CCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCC
Q 035647 752 QAPPNIESLEMCYYKGK-TALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHS 830 (938)
Q Consensus 752 ~~~~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 830 (938)
..+++|+.|++++|.+. +.+|..+..+++|+.|++++|..... +.++.+++|++|++++|. +...
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~------------ 86 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGG------------ 86 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSC------------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchH------------
Confidence 45688999999999987 44898889999999999999975544 888999999999999876 3331
Q ss_pred CCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCc----CCCCCCCccEEEEcCCcc
Q 035647 831 SSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPV----DLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 831 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~c~~ 904 (938)
.+..+..+++|++|++++| .+..++.. ..+..+++|+.|++++|+ +..+|. .+..+++|+.|++++|+.
T Consensus 87 --~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 87 --LDMLAEKLPNLTHLNLSGN-KLKDISTL-EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp --CCHHHHHCTTCCEEECBSS-SCCSSGGG-GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred --HHHHHhhCCCCCEEeccCC-ccCcchhH-HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 1222346999999999998 55665421 346789999999999985 667775 678899999999999953
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=2.7e-10 Score=115.15 Aligned_cols=152 Identities=11% Similarity=0.164 Sum_probs=119.0
Q ss_pred ceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC--CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCc
Q 035647 758 ESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP--SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSS 835 (938)
Q Consensus 758 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 835 (938)
+.++++++.+.. +|..+ .+.++.|+|++|......+ .++.+++|++|+|++|. ++.++..
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~-------------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEG-------------- 75 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTT--------------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHH--------------
Confidence 588999999887 88755 4567999999998666544 37899999999999876 6655432
Q ss_pred ccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCCcchHHhhccCCCC
Q 035647 836 SIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNCPILKERFKKDVGE 915 (938)
Q Consensus 836 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~ 915 (938)
.+..+++|++|+|++| .+..++ +..+..+++|++|++++|......|..+..+++|+.|++++| .+....+.
T Consensus 76 ~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-----~l~~~~~~ 147 (220)
T 2v70_A 76 AFEGASGVNEILLTSN-RLENVQ--HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-----QITTVAPG 147 (220)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCC--GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-----CCCCBCTT
T ss_pred HhCCCCCCCEEECCCC-ccCccC--HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-----cCCEECHH
Confidence 2468999999999998 445543 334678999999999999644444778899999999999999 34444456
Q ss_pred CcccccCcCceeeccccccC
Q 035647 916 DWAKIFHIPNIQINGHNVQG 935 (938)
Q Consensus 916 ~~~~i~~i~~i~i~~~~~~~ 935 (938)
.+..++++..+.+++|.+++
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCCCCCEEEecCcCCcC
Confidence 67778889999999999875
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=4.6e-10 Score=114.30 Aligned_cols=133 Identities=16% Similarity=0.062 Sum_probs=104.3
Q ss_pred cccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCc-hhhhccCccEEEEeCCCC
Q 035647 713 KKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPS-WVVLLNKLKKLYLTHCNN 791 (938)
Q Consensus 713 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~ 791 (938)
-..+|+.|++++|.+.+ ..+..+..+++|+.|+|++|.+.. +|. .+..+++|+.|+|++|..
T Consensus 38 ~~~~L~~L~Ls~n~i~~----------------~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITK----------------LEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp CCTTCSEEECCSSCCCC----------------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCEEEcCCCccCc----------------cCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcC
Confidence 47789999999998874 224567788999999999999987 664 467899999999999976
Q ss_pred CCCCCC-CCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcc
Q 035647 792 CEIMPS-LGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQL 870 (938)
Q Consensus 792 ~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L 870 (938)
....+. +..+++|++|+|++|. ++.+|.. +..+++|+.|++++| .+..++. ..+..+++|
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---------------~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L 161 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNK-LTELPRG---------------IERLTHLTHLALDQN-QLKSIPH--GAFDRLSSL 161 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCSCCTT---------------GGGCTTCSEEECCSS-CCCCCCT--TTTTTCTTC
T ss_pred CccChhHhCcchhhCeEeccCCc-ccccCcc---------------cccCCCCCEEECCCC-cCCccCH--HHHhCCCCC
Confidence 655553 6889999999999865 5555432 458899999999998 5565542 346789999
Q ss_pred cEEeecCCccc
Q 035647 871 ISLELGSCSKL 881 (938)
Q Consensus 871 ~~L~l~~c~~l 881 (938)
+.|++.+|+..
T Consensus 162 ~~L~l~~N~~~ 172 (229)
T 3e6j_A 162 THAYLFGNPWD 172 (229)
T ss_dssp CEEECTTSCBC
T ss_pred CEEEeeCCCcc
Confidence 99999998744
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.09 E-value=4.1e-10 Score=112.96 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=71.2
Q ss_pred CCcceEEEeecCCCCCCCc-hhhhccCccEEEEeCCCCCCCCCC-CCCCCCccceeeccccCceEeCcccccCCCCCCCC
Q 035647 755 PNIESLEMCYYKGKTALPS-WVVLLNKLKKLYLTHCNNCEIMPS-LGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSS 832 (938)
Q Consensus 755 ~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 832 (938)
++|++|++++|.+.+ +|. .+..+++|++|++++|......+. +..+++|++|++++|. ++.++..
T Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----------- 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNG----------- 94 (208)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-----------
T ss_pred CCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHh-----------
Confidence 456666666666665 333 345666666666666654433332 4566666666666643 3333221
Q ss_pred CCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcC-CCCCCCccEEEEcCCc
Q 035647 833 SSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVD-LLRSQKLKMLEIYNCP 903 (938)
Q Consensus 833 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 903 (938)
.+..+++|++|++++| .+..++ +..+..+++|+.|++++|. +..+|.. +..+++|+.|++++|+
T Consensus 95 ---~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 95 ---VFDKLTQLKELALNTN-QLQSLP--DGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ---TTTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ---HhcCccCCCEEEcCCC-cCcccC--HhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 1345666666666665 333332 1224456667777776663 4444433 5556667777766653
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=4.5e-10 Score=113.50 Aligned_cols=131 Identities=16% Similarity=0.219 Sum_probs=105.8
Q ss_pred CCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCC
Q 035647 755 PNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSS 833 (938)
Q Consensus 755 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 833 (938)
++|+.|++++|.+.+..|..+..+++|+.|+|++|......| .+..+++|++|+|++|. ++.++...
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~----------- 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSL----------- 99 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTT-----------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhH-----------
Confidence 689999999999988334468899999999999998766644 68999999999999875 55555432
Q ss_pred CcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCc-CCCCCCCccEEEEcCCcc
Q 035647 834 SSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPV-DLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 834 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~ 904 (938)
+..+++|++|+|++| .+..++ +..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++||-
T Consensus 100 ---f~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 ---FEGLFSLQLLLLNAN-KINCLR--VDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ---TTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ---ccCCCCCCEEECCCC-CCCEeC--HHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 457899999999998 455543 3457789999999999985 666664 588899999999999974
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=7.5e-11 Score=129.40 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=83.9
Q ss_pred CCCcchhccCCCcccEEeecCCCCCcccchh-hh-cccCCCeEEeCCccccccCc-cCCCCCCCCcCCceEecCCCCCCC
Q 035647 598 TEELPETCCELCNLQTIEIEECSNLRRLPQR-IG-KLVNLRHLIFVDVYLDYMPK-GIERLTCLRTLSEFVVSGRGKYGN 674 (938)
Q Consensus 598 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~-~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~ 674 (938)
+..+|..+. ..++.|+|++|. +..+|.. +. .+++|++|++++|.+..+|+ .|..+++|++|++..|....
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~---- 102 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT---- 102 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----
T ss_pred cCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc----
Confidence 555565443 246667777766 6665544 33 66777777777776666654 36666666666554432211
Q ss_pred CccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCC
Q 035647 675 KACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAP 754 (938)
Q Consensus 675 ~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 754 (938)
.....+..+.+|+.|++++|.+.. ..+..+..+
T Consensus 103 -------------------------------~~~~~~~~l~~L~~L~L~~N~i~~----------------~~~~~~~~l 135 (361)
T 2xot_A 103 -------------------------------LDEFLFSDLQALEVLLLYNNHIVV----------------VDRNAFEDM 135 (361)
T ss_dssp -------------------------------ECTTTTTTCTTCCEEECCSSCCCE----------------ECTTTTTTC
T ss_pred -------------------------------CCHHHhCCCcCCCEEECCCCcccE----------------ECHHHhCCc
Confidence 001123344566666666665542 112345555
Q ss_pred CCcceEEEeecCCCCCCCchh----hhccCccEEEEeCCCCCCCCC-CCCCCCC--ccceeecccc
Q 035647 755 PNIESLEMCYYKGKTALPSWV----VLLNKLKKLYLTHCNNCEIMP-SLGKLPS--LEILQIIGMR 813 (938)
Q Consensus 755 ~~L~~L~L~~~~~~~~lp~~~----~~l~~L~~L~L~~~~~~~~l~-~l~~l~~--L~~L~L~~~~ 813 (938)
++|+.|+|++|.+.. +|..+ ..+++|+.|+|++|......+ .+..++. |+.|+|.+|+
T Consensus 136 ~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 136 AQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666666666666665 55543 345666666666664332221 2333443 2555555543
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=1.5e-10 Score=111.63 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=105.5
Q ss_pred CceEEEEEEcCCCC--CCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCC-cchhccCCCcccE
Q 035647 542 EELRHSILFLGYNA--SLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEE-LPETCCELCNLQT 613 (938)
Q Consensus 542 ~~lr~l~l~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~-lp~~i~~L~~L~~ 613 (938)
.+++++++.++.+. .+|..+..+++|+.|++++|.. ..+ ..+..+++|++|+ +.. +|..+.++++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l---~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL---ISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC---CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC---CCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 77999999999987 6888888999999999999742 233 6788899999998 555 7777778999999
Q ss_pred EeecCCCCCcccc--hhhhcccCCCeEEeCCccccccCc----cCCCCCCCCcCCceEecCCC
Q 035647 614 IEIEECSNLRRLP--QRIGKLVNLRHLIFVDVYLDYMPK----GIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 614 L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~~~~~ 670 (938)
|++++|. +..+| ..++.+++|++|++++|.+..+|. .+..+++|++|++..+....
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999998 88876 678999999999999999998887 68899999999988876544
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=8.9e-11 Score=128.80 Aligned_cols=168 Identities=17% Similarity=0.100 Sum_probs=110.1
Q ss_pred eEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchh-cc-CCCcccEEeecCCCCCcccch-hhhcccCCCeEE
Q 035647 568 RSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPET-CC-ELCNLQTIEIEECSNLRRLPQ-RIGKLVNLRHLI 639 (938)
Q Consensus 568 r~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 639 (938)
+++++.++ .+..+|..+. ..+++|+ +..+|.. +. ++++|++|+|++|. +..+|. .+..+++|++|+
T Consensus 21 ~~l~c~~~---~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQ---QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSS---CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCC---CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEE
Confidence 45666553 3344555443 2466666 5666654 44 78888888888887 777664 488888888888
Q ss_pred eCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccC
Q 035647 640 FVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLV 718 (938)
Q Consensus 640 l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~ 718 (938)
+++|.+..+|+. |..+++|+.|++..|.... .....+..+.+|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----------------------------------~~~~~~~~l~~L~ 139 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-----------------------------------VDRNAFEDMAQLQ 139 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------------------------------ECTTTTTTCTTCC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-----------------------------------ECHHHhCCcccCC
Confidence 888888877764 7788888888776544322 0122345667888
Q ss_pred ceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCc-hhhhccC--ccEEEEeCCC
Q 035647 719 HLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPS-WVVLLNK--LKKLYLTHCN 790 (938)
Q Consensus 719 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~--L~~L~L~~~~ 790 (938)
.|++++|.+..... .....+..+++|+.|+|++|.+.. +|. .+..+++ |+.|+|++|+
T Consensus 140 ~L~L~~N~l~~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 140 KLYLSQNQISRFPV-------------ELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSSCCCSCCG-------------GGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSC
T ss_pred EEECCCCcCCeeCH-------------HHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCC
Confidence 88888888764211 011112457888888888888887 663 4556665 4788888886
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=4.1e-11 Score=143.43 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=93.8
Q ss_pred cCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhccCCCcccEEeecCCCCCccc
Q 035647 551 LGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETCCELCNLQTIEIEECSNLRRL 625 (938)
Q Consensus 551 ~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i~~L~~L~~L~L~~~~~l~~l 625 (938)
.+.+...+..+..+++|+.|+|++|. +..+|..+.++++|++|+ +..+|..+++|++|++|+|++|. ++.+
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQ---IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp ------------CCCCCCEEECTTSC---CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSC
T ss_pred ccceecChhhhccCCCCcEEECCCCC---CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCcc
Confidence 33333346677889999999999863 346777788999999998 77899999999999999999999 8899
Q ss_pred chhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCC
Q 035647 626 PQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 626 p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~ 670 (938)
|..+++|++|++|+|++|.+..+|..|++|++|++|++..|...+
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 999999999999999999999999999999999999988776654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=1.9e-10 Score=111.92 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=108.7
Q ss_pred hcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCC
Q 035647 750 ALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHH 829 (938)
Q Consensus 750 ~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 829 (938)
.+..+++|+.|++++|.+.. +|......++|+.|++++|...+. +.++.+++|++|++++|. ++.++..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~------- 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGL------- 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCH-------
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcch-------
Confidence 35567899999999999987 776444555999999999975544 889999999999999976 66665432
Q ss_pred CCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcC----CCCCCCccEEEEcCCcch
Q 035647 830 SSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVD----LLRSQKLKMLEIYNCPIL 905 (938)
Q Consensus 830 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----l~~l~~L~~L~l~~c~~l 905 (938)
+..+++|++|++++| .+..++.. ..+..+++|+.|++++|+ +..+|.. +..+++|+.|++++|+.-
T Consensus 84 -------~~~l~~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 -------DQALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp -------HHHCTTCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred -------hhcCCCCCEEECCCC-cCCcchhh-HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 257899999999998 45665431 146789999999999996 6677764 778999999999999754
Q ss_pred H
Q 035647 906 K 906 (938)
Q Consensus 906 ~ 906 (938)
.
T Consensus 154 ~ 154 (176)
T 1a9n_A 154 E 154 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=8.3e-11 Score=110.96 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=99.9
Q ss_pred CCCCCcceEEEeecCCC-CCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCC
Q 035647 752 QAPPNIESLEMCYYKGK-TALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHS 830 (938)
Q Consensus 752 ~~~~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 830 (938)
..+++|+.|++++|.+. +.+|..+..+++|+.|++++|..... +.++.+++|++|++++|. ++..
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~------------ 79 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGG------------ 79 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSC------------
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccch------------
Confidence 34578999999999987 45898888999999999999965544 788899999999999876 3321
Q ss_pred CCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCc----CCCCCCCccEEEEcC
Q 035647 831 SSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPV----DLLRSQKLKMLEIYN 901 (938)
Q Consensus 831 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~ 901 (938)
.+..+..+++|++|++++|. +..++. +..+..+++|++|++++|+ +..+|. .+..+++|+.|++++
T Consensus 80 --~~~~~~~l~~L~~L~ls~N~-i~~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 --LEVLAEKCPNLTHLNLSGNK-IKDLST-IEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp --THHHHHHCTTCCEEECTTSC-CCSHHH-HGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred --HHHHhhhCCCCCEEECCCCc-CCChHH-HHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 12223468999999999984 555432 1346789999999999985 666664 577788999988764
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=1.5e-10 Score=109.13 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=96.0
Q ss_pred CceEEEEEEcCCCC--CCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCC-cchhccCCCcccE
Q 035647 542 EELRHSILFLGYNA--SLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEE-LPETCCELCNLQT 613 (938)
Q Consensus 542 ~~lr~l~l~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~-lp~~i~~L~~L~~ 613 (938)
.+++++++.++.+. .+|..+..+++|+.|++++|.. ..+ ..++.+++|++|+ +.. +|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL---TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC---CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC---CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 77999999999887 6888888999999999998732 222 6688888888887 455 7777778899999
Q ss_pred EeecCCCCCcccc--hhhhcccCCCeEEeCCccccccCc----cCCCCCCCCcCCce
Q 035647 614 IEIEECSNLRRLP--QRIGKLVNLRHLIFVDVYLDYMPK----GIERLTCLRTLSEF 664 (938)
Q Consensus 614 L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~ 664 (938)
|++++|. ++.+| ..++.+++|++|++++|.+..+|. .++.+++|+.|++.
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999988 77765 678889999999999998888876 57788888888753
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=1.9e-09 Score=106.31 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=26.4
Q ss_pred CcceEEEeecCCCCCCCc--hhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccc
Q 035647 756 NIESLEMCYYKGKTALPS--WVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGM 812 (938)
Q Consensus 756 ~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 812 (938)
+|+.|++++|.+.+ +|. .+..+++|++|+|++|......| .++.+++|++|+|++|
T Consensus 30 ~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 30 HTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCEEECCCCcCCc-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 45555555555544 332 24455555555555554433322 3444555555555443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=4.5e-11 Score=118.87 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=37.4
Q ss_pred CcchhccCCCcccEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEe
Q 035647 600 ELPETCCELCNLQTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVV 666 (938)
Q Consensus 600 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 666 (938)
.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|..+..+++|+.|++..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 344456666666666666665 55566 566666666666666665555554444444555444443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=1.3e-09 Score=117.86 Aligned_cols=286 Identities=12% Similarity=0.020 Sum_probs=152.4
Q ss_pred cCceEEEEEEcCCCCCCcccccC-CCCceEEEEecCCCcchhhhhhhhhccCccccc--CCCCcch-hccC--------C
Q 035647 541 QEELRHSILFLGYNASLPVCIYN-AKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRAL--RTEELPE-TCCE--------L 608 (938)
Q Consensus 541 ~~~lr~l~l~~~~~~~~~~~~~~-l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L--~i~~lp~-~i~~--------L 608 (938)
..++.+|.+.++........+.. +++|+.|+|++|........+..+ +.++++ ....+|. .|.+ +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccCHHHhccccccccccc
Confidence 35677888876532211223333 788999999987321001111111 112222 2335553 4666 8
Q ss_pred CcccEEeecCCCCCcccchh-hhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCcccccccc
Q 035647 609 CNLQTIEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLN 686 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~ 686 (938)
.+|+.|+|.. . ++.++.. |..|++|+.|++.+|.+..+++. |..+.++..+...... ....+..
T Consensus 101 ~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~----------~~~~~~~-- 166 (329)
T 3sb4_A 101 QTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD----------AYRFKNR-- 166 (329)
T ss_dssp TTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH----------HHHTSTT--
T ss_pred CCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh----------hhhcccc--
Confidence 9999999988 4 7777764 88899999999998887777664 4444444333211100 0000000
Q ss_pred ccCCeEEEcCCCCCCChhhhhhccCccccccC-ceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeec
Q 035647 687 NLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLV-HLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYY 765 (938)
Q Consensus 687 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 765 (938)
.....+..+.+|+ .+.+... . .....+...-..+.++..+.+.++
T Consensus 167 -------------------i~~~~f~~~~~L~~~i~~~~~--~-------------~l~~~~~~~~~~~~~~~~l~~~~~ 212 (329)
T 3sb4_A 167 -------------------WEHFAFIEGEPLETTIQVGAM--G-------------KLEDEIMKAGLQPRDINFLTIEGK 212 (329)
T ss_dssp -------------------TTTSCEEESCCCEEEEEECTT--C-------------CHHHHHHHTTCCGGGCSEEEEEEC
T ss_pred -------------------ccccccccccccceeEEecCC--C-------------cHHHHHhhcccCccccceEEEeee
Confidence 0001112222232 1111110 0 001111222223455666666665
Q ss_pred CCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccc
Q 035647 766 KGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLK 844 (938)
Q Consensus 766 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 844 (938)
-....+......+++|+.|+|++|......+ .+.++++|+.|+|.++ ++.++... +.++++|+
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a--------------F~~~~~L~ 276 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV--------------FSNCGRLA 276 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTT--------------TTTCTTCC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHH--------------hhCChhcc
Confidence 3221111111136777777777765433333 4777778888887663 66665432 35677888
Q ss_pred -eeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEE
Q 035647 845 -KLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLE 898 (938)
Q Consensus 845 -~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~ 898 (938)
.+.+.+ .+..+. +..|..+++|+.|++.+| .++.++ ..+.++++|+.|.
T Consensus 277 ~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPA--SVTAIE--FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECT--TCCEEC--TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EEEEEcc--cceEEc--hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 888876 445553 344678888888888766 466665 3677788888775
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=3.7e-09 Score=114.15 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=115.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 257 (938)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ..+++++.+.......+ +++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i-~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVV-RNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHHH-HHH
Confidence 56999999999999998643 222389999999999999999987521 1111 12444444332222111 111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHH-HHhc-ccC
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKV-VRMM-EST 334 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~-~~~~-~~~ 334 (938)
++.+... ...+ .+++.++|+||++.-....++.+...+.....++++|+||+.... ...+ ...
T Consensus 93 ~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 1111100 0011 345889999999654444455666666655567788888876431 1111 224
Q ss_pred CeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHHhh
Q 035647 335 DVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIGSL 391 (938)
Q Consensus 335 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a~~ 391 (938)
..+.+.+++.++..+++...+...+... ..+....|++.++|.|. |+..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5899999999999999988663222111 13455679999999995 44444433
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.92 E-value=4.2e-09 Score=113.69 Aligned_cols=267 Identities=14% Similarity=0.051 Sum_probs=141.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+|+|++..++.+...+..... .....+.+.|+|++|+|||++|+.+++.. . ...++++.........+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~---~~~~~~~~~~~~~~~~l----- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--G---VNLRVTSGPAIEKPGDL----- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--T---CCEEEECTTTCCSHHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEeccccCChHHH-----
Confidence 5799999999998888753210 01134578999999999999999998752 1 12345544332222111
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC------------------CCCEEEE
Q 035647 259 EALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL------------------RGSKILV 320 (938)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iiv 320 (938)
...+...+ .++.+|++|++..-.......+...+.... .+.++|.
T Consensus 81 ----------------~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 81 ----------------AAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ----------------HHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ----------------HHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 11111111 346688999995433223333443333211 2356777
Q ss_pred EcCChH-HHHhc-cc-CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhhcCC--
Q 035647 321 TTRNEK-VVRMM-ES-TDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLLRFK-- 395 (938)
Q Consensus 321 Ttr~~~-~~~~~-~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l~~~-- 395 (938)
||.... +...+ .. ...+.+.+++.+|..+++...+........ .+....|++.++|.|..+..+...+...
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666432 11111 11 258999999999999999887654332211 3456778999999998877665544211
Q ss_pred ------CCHHHHHHHHhhhcccchhhhchhhhhhhhcccCCcHHHHHHHhhhc-CCCCC----------cccchhHH---
Q 035647 396 ------RTREEWESVLNSEMWWFEELEKYLFAPLLLSYNDLPSMIKQCFLYCT-VFPKD----------YNIEKDEL--- 455 (938)
Q Consensus 396 ------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~a-~fp~~----------~~i~~~~l--- 455 (938)
-+.+.....+.. +...+..++...+..+..+. .|..+ ..+.+..+
T Consensus 220 ~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 123333333322 11223344444444443322 12111 01222222
Q ss_pred -HHHHHHcCCcccc-CCchHHHHHHHHHH-HHHhcccCcc
Q 035647 456 -IKLWMAQGYIEQK-GNKEMEIIGQEYFD-CLATRSFFQD 492 (938)
Q Consensus 456 -i~~w~a~g~i~~~-~~~~~e~~~~~~l~-~L~~~sll~~ 492 (938)
-++-+..|++... .+....+.|.+||. ++.+|+|||+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2234456777543 34566777888886 7888888774
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=1e-09 Score=106.69 Aligned_cols=120 Identities=17% Similarity=0.044 Sum_probs=93.3
Q ss_pred CceEEEEEEcCCCCCCcccccCC-CCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchhc-cCCCcccEE
Q 035647 542 EELRHSILFLGYNASLPVCIYNA-KKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPETC-CELCNLQTI 614 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l-~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~i-~~L~~L~~L 614 (938)
.+++.+++.+|.+..++. +..+ ++|+.|++++|.. ..+ ..++.+++|++|+ +..+|..+ ..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l---~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEI---RKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCC---CEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCC---Ccc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 678999999998887754 4444 4999999998732 223 5678888888887 66677554 788889999
Q ss_pred eecCCCCCcccch--hhhcccCCCeEEeCCccccccCcc----CCCCCCCCcCCceEec
Q 035647 615 EIEECSNLRRLPQ--RIGKLVNLRHLIFVDVYLDYMPKG----IERLTCLRTLSEFVVS 667 (938)
Q Consensus 615 ~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~~ 667 (938)
++++|. ++.+|. .++.+++|++|++++|.+..+|.. ++.+++|+.|++..+.
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 998887 788886 688888899999988888888875 7888888888876654
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.86 E-value=7.6e-09 Score=101.95 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=32.3
Q ss_pred CCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccc
Q 035647 755 PNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGM 812 (938)
Q Consensus 755 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 812 (938)
++|+.|++++|.+.. +|..+..+++|+.|+|++|......+ .+..+++|++|+|++|
T Consensus 31 ~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666666666654 66556666666666666665443333 3555555555555553
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.84 E-value=1.6e-09 Score=106.92 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=32.2
Q ss_pred cEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCcc--CCCCCCCCcCCceE
Q 035647 612 QTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKG--IERLTCLRTLSEFV 665 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~--i~~L~~L~~L~~~~ 665 (938)
++++++++. ++.+|..+.. +|++|++++|.+..+|+. ++.+++|++|++..
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR 63 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCC
Confidence 667777776 6777765543 777777777776666543 55555555555443
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.80 E-value=4.2e-09 Score=103.82 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=31.9
Q ss_pred cEEeecCCCCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceE
Q 035647 612 QTIEIEECSNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFV 665 (938)
Q Consensus 612 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~ 665 (938)
++++++++. ++.+|..+. ++|++|++++|.+..+|..+..+++|+.|++..
T Consensus 13 ~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~ 63 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN 63 (193)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS
T ss_pred CEEEcCCCC-CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC
Confidence 566666666 666666542 467777777776666666566666666555443
No 149
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=6.9e-08 Score=101.28 Aligned_cols=173 Identities=7% Similarity=-0.016 Sum_probs=107.2
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccccc---CC--CeEEEEEeCCCCCHHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVIN---NF--DKRMWVCVSDNFDEFRIA 254 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~~~ 254 (938)
.+.|||+|+++|...|...- .......+.|+|++|+|||++|+.|++...... .. -.++++++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 37899999999998886532 123567889999999999999999998632111 11 135677777778888999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhh---cCceeeEEeCCCCCCCcCCchhhhhhhcc-CCCCC--EEEEEcCChH--
Q 035647 255 KAIIEALEGSAPNLGELQSLLQHIYASI---VGKRFFLVLDDVWTDDYSKWEPFHNCLMH-GLRGS--KILVTTRNEK-- 326 (938)
Q Consensus 255 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTtr~~~-- 326 (938)
..|++++.+.........+....+...+ .++++++|||+++.-. .-+.+...+.+ ....+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 9999999654222222222333333332 4678999999995432 22334443321 11223 3344454321
Q ss_pred ---HHHhcc-c--CCeEecCCCChHHHHHHHHHhhc
Q 035647 327 ---VVRMME-S--TDVISIKELSEQECWWLFKRFAF 356 (938)
Q Consensus 327 ---~~~~~~-~--~~~~~l~~L~~~ea~~lf~~~~~ 356 (938)
+.+.+. . ...+.+.+++.+|-.+++.+++.
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 111111 1 24799999999999999988763
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=8.8e-11 Score=116.75 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=87.7
Q ss_pred ccEEeecCC-CCCcccchhhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccC
Q 035647 611 LQTIEIEEC-SNLRRLPQRIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLR 689 (938)
Q Consensus 611 L~~L~L~~~-~~l~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 689 (938)
|+.+.+.++ ..++.+|..++.+++|++|++++|.+..+| .+..+++|+.|++..+.... +
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~--------------l---- 85 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--------------I---- 85 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS--------------C----
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc--------------c----
Confidence 344444443 126667778999999999999999988888 88888899988877654321 0
Q ss_pred CeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCC
Q 035647 690 GSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKT 769 (938)
Q Consensus 690 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 769 (938)
+..+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+..
T Consensus 86 ------------------~~~~~~~~~L~~L~L~~N~l~~-----------------l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 86 ------------------ENLDAVADTLEELWISYNQIAS-----------------LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp ------------------SSHHHHHHHCSEEEEEEEECCC-----------------HH-HHHHHHHSSEEEESEEECCC
T ss_pred ------------------cchhhcCCcCCEEECcCCcCCc-----------------CC-ccccCCCCCEEECCCCcCCc
Confidence 0112234578888888887763 12 34456778888888887766
Q ss_pred CCCc--hhhhccCccEEEEeCCCCCCC
Q 035647 770 ALPS--WVVLLNKLKKLYLTHCNNCEI 794 (938)
Q Consensus 770 ~lp~--~~~~l~~L~~L~L~~~~~~~~ 794 (938)
+|. .+..+++|++|++++|.....
T Consensus 130 -~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 130 -WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp -HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred -hhHHHHHhcCCCCCEEEecCCccccc
Confidence 543 566778888888888764433
No 151
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=3.1e-08 Score=106.98 Aligned_cols=185 Identities=13% Similarity=0.068 Sum_probs=114.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 257 (938)
.+++|++..++.+..++... ....+.|+|++|+||||+|+.+++... ...+ ...+.+..+....... .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~--- 93 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINV-I--- 93 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHT-T---
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHH-H---
Confidence 46999999999999988643 233489999999999999999988521 1111 1233444332111100 0
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHh--h-cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHH-HHhc-c
Q 035647 258 IEALEGSAPNLGELQSLLQHIYAS--I-VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKV-VRMM-E 332 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~-~~~~-~ 332 (938)
.......... + .+++.++|+|+++.-....++.+...+.....++++|+||..... ...+ .
T Consensus 94 --------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 94 --------------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp --------------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred --------------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 0111111111 1 256889999999654444556676666665667888988876431 1111 1
Q ss_pred cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHhhh
Q 035647 333 STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGSLL 392 (938)
Q Consensus 333 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~~l 392 (938)
....+.+.+++.++..+++...+...+... ..+....|++.++|.|..+..+...+
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCEE----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 234789999999999999988765433211 23455678899999998655544433
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=6.3e-08 Score=94.02 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=73.6
Q ss_pred cceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCc
Q 035647 757 IESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSS 835 (938)
Q Consensus 757 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 835 (938)
.+.++++++.+.. +|..+ .++|+.|++++|......+ .++.+++|++|++++|. ++.++..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------------- 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDG-------------- 70 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT--------------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChh--------------
Confidence 3456666666555 55432 3566777777665444333 24666777777776653 3333321
Q ss_pred ccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcC-CCCCCCccEEEEcCCc
Q 035647 836 SIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVD-LLRSQKLKMLEIYNCP 903 (938)
Q Consensus 836 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 903 (938)
.+..+++|++|++++| .+..++ +..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|+
T Consensus 71 ~~~~l~~L~~L~l~~N-~l~~~~--~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 71 VFDKLTKLTILYLHEN-KLQSLP--NGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCccCEEECCCC-CccccC--HHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 1345677777777776 344333 222456777888888777 45566654 4667778888887775
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=1.2e-08 Score=99.08 Aligned_cols=120 Identities=26% Similarity=0.309 Sum_probs=90.8
Q ss_pred EEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC-----CCCcchh-ccCCCcccEEeecC
Q 035647 545 RHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR-----TEELPET-CCELCNLQTIEIEE 618 (938)
Q Consensus 545 r~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~-----i~~lp~~-i~~L~~L~~L~L~~ 618 (938)
+.+.+.++.+..+|..+ .++|+.|++++| ......+..++.+++|++|+ +..+|.. +..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESN--KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCC--cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45666677777666544 368888888886 33333445567888888887 5566654 68899999999999
Q ss_pred CCCCcccchh-hhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCC
Q 035647 619 CSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGR 669 (938)
Q Consensus 619 ~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~ 669 (938)
|. ++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|++..|...
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 98 7777765 68899999999999999888886 478899999988776544
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.64 E-value=2e-08 Score=96.95 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCCCcc
Q 035647 545 RHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSNLRR 624 (938)
Q Consensus 545 r~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 624 (938)
+.+++.++.+..+|..+. ++|+.|++++|. ..... |..+.++++|++|+|++|. +..
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~--l~~~~------------------~~~~~~l~~L~~L~Ls~N~-l~~ 71 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ--ITKLE------------------PGVFDHLVNLQQLYFNSNK-LTA 71 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCCCC------------------TTTTTTCTTCCEEECCSSC-CCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC--ccccC------------------HHHhcCCcCCCEEECCCCC-CCc
Confidence 567778888887887664 788999988862 22222 3445566666677777665 666
Q ss_pred cchh-hhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCC
Q 035647 625 LPQR-IGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGR 669 (938)
Q Consensus 625 lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~ 669 (938)
+|.. +.++++|++|++++|.+..+|+. |..+++|++|++..|...
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6654 46667777777777766666665 666666776666655443
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.9e-07 Score=100.68 Aligned_cols=262 Identities=11% Similarity=0.053 Sum_probs=157.2
Q ss_pred CceEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhc--------cCcccccC----CCCcch-hccCC
Q 035647 542 EELRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQ--------LTCLRALR----TEELPE-TCCEL 608 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~--------l~~Lr~L~----i~~lp~-~i~~L 608 (938)
.+++.|++.+|.+......-..++.++.+.+..+ ...+..|.+ +++|+.|+ +..++. .|.++
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~-----~I~~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN-----FVPAYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGC 123 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT-----EECTTTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTTC
T ss_pred ccCeEEecCcceeEEecCcccccccccccccccc-----ccCHHHhcccccccccccCCCcEEECCccccchhHHHhhcC
Confidence 6799999999887622111123333455544443 122355667 99999988 555664 58899
Q ss_pred CcccEEeecCCCCCcccchh-hhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccc
Q 035647 609 CNLQTIEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNN 687 (938)
Q Consensus 609 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~ 687 (938)
++|+.|++.+|. +..++.. |..+.++..+.+..+... .....+.... +.++..|.
T Consensus 124 ~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~------~~~~~i~~~~----------------f~~~~~L~- 179 (329)
T 3sb4_A 124 DNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAY------RFKNRWEHFA----------------FIEGEPLE- 179 (329)
T ss_dssp TTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHH------HTSTTTTTSC----------------EEESCCCE-
T ss_pred cccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhh------hccccccccc----------------cccccccc-
Confidence 999999999988 6666653 666666666655442210 0111111111 11111111
Q ss_pred cCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCC
Q 035647 688 LRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKG 767 (938)
Q Consensus 688 L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 767 (938)
..+.+. ....+............++..+.+..+-.. ..+......+++|+.|+|.+|.+
T Consensus 180 --~~i~~~---~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~----------------~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 180 --TTIQVG---AMGKLEDEIMKAGLQPRDINFLTIEGKLDN----------------ADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp --EEEEEC---TTCCHHHHHHHTTCCGGGCSEEEEEECCCH----------------HHHHHHHHHCTTCCEEECTTBCC
T ss_pred --eeEEec---CCCcHHHHHhhcccCccccceEEEeeeecH----------------HHHHHHHHhcCCCeEEECCCCCc
Confidence 011111 112222222222234456777777654211 11111122378999999999988
Q ss_pred CCCCCch-hhhccCccEEEEeCCCCCCCCC--CCCCCCCcc-ceeeccccCceEeCcccccCCCCCCCCCCcccccCCcc
Q 035647 768 KTALPSW-VVLLNKLKKLYLTHCNNCEIMP--SLGKLPSLE-ILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKL 843 (938)
Q Consensus 768 ~~~lp~~-~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L 843 (938)
.. +|.. +..+++|+.|+|.++ ...++ .+.++++|+ .+.+.+ .++.++... +.++++|
T Consensus 239 ~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a--------------F~~c~~L 299 (329)
T 3sb4_A 239 TT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA--------------FMGCDNL 299 (329)
T ss_dssp CE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT--------------TTTCTTE
T ss_pred ce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh--------------hhCCccC
Confidence 87 7664 668999999999997 34344 588999999 999987 577776532 4689999
Q ss_pred ceeeccCccccccccccccccccCCcccEEee
Q 035647 844 KKLTLRGLYEWEEWEIEKEDIAVMPQLISLEL 875 (938)
Q Consensus 844 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 875 (938)
+.|++.++ .+..++ +..|..+++|+.|+.
T Consensus 300 ~~l~l~~n-~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGD-KITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSS-CCCEEC--TTTTCTTCCCCEEEC
T ss_pred CEEEeCCC-ccCccc--hhhhcCCcchhhhcc
Confidence 99999765 455554 334778889988763
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.59 E-value=3e-07 Score=101.28 Aligned_cols=195 Identities=13% Similarity=0.145 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++||+..++.+...+.... ..+.+.|+|++|+||||+|+.+++.......+.. ..+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHh
Confidence 469999999999999986432 2357899999999999999999875221111100 000000 0011111
Q ss_pred HH-------hcC-CCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HH
Q 035647 259 EA-------LEG-SAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VV 328 (938)
Q Consensus 259 ~~-------l~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~ 328 (938)
.. +.. ..............+... ..+++.++|+||++.-+....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 000 001112233322222211 135678999999965444445566666655555667777776443 11
Q ss_pred Hhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 329 RMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 329 ~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
..+ .....+++.+++.++..+++.+.+...+... ..+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 2346899999999999999987653222111 13445679999999998776654
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.57 E-value=2.7e-07 Score=99.12 Aligned_cols=182 Identities=14% Similarity=0.074 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 257 (938)
.+++|++..++.+..++... ....+.++|++|+|||++|+.+++... ...+ ..++.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 46999999999999888532 223389999999999999999987521 1111 12233443331110
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHh--h-cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HHHhc-c
Q 035647 258 IEALEGSAPNLGELQSLLQHIYAS--I-VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRMM-E 332 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~ 332 (938)
............. + .+++.++|+|+++.-.....+.+...+.....++++|+||.... +...+ .
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 25678999999965433344556555555455778888877543 11111 2
Q ss_pred cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 333 STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 333 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
....+.+.+++.++..+++...+...+...+ .+....|++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 2458999999999999999887654332212 3445668899999998654443
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=2.7e-07 Score=90.84 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=84.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc---cc--CCCeEEEEEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV---IN--NFDKRMWVCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~--~f~~~~wv~~~~~~~~~~~ 253 (938)
..++||+++++++.+.+... ..+.+.|+|.+|+|||++|+.+++.... .. ....++++++.. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 46899999999999998542 3456789999999999999999875211 00 112344543321 1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhh--cCceeeEEeCCCCCCC--------cCCchhhhhhhccCCCCCEEEEEcC
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASI--VGKRFFLVLDDVWTDD--------YSKWEPFHNCLMHGLRGSKILVTTR 323 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 323 (938)
+. ..............+.+.+ .+++.+||+||++.-. ......+...+ .. .+..+|+||.
T Consensus 90 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~-~~~~~i~~~~ 159 (195)
T 1jbk_A 90 -------VA-GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATT 159 (195)
T ss_dssp -------HT-TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HT-TSCCEEEEEC
T ss_pred -------hc-cCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-cc-CCeEEEEeCC
Confidence 10 0111111122222222222 2567899999995421 11122233322 22 2456777776
Q ss_pred ChHHHH------hc-ccCCeEecCCCChHHHHHHH
Q 035647 324 NEKVVR------MM-ESTDVISIKELSEQECWWLF 351 (938)
Q Consensus 324 ~~~~~~------~~-~~~~~~~l~~L~~~ea~~lf 351 (938)
...... .+ .....+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 554221 11 12236889999988876654
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.51 E-value=1.5e-06 Score=95.87 Aligned_cols=235 Identities=12% Similarity=0.110 Sum_probs=139.3
Q ss_pred hhhccCcccccC----CCCcch-hccCCCcccEEeecCCCCCcccch-hhhcccCCCeEEeCCccccccCccCCCCCCCC
Q 035647 586 FFDQLTCLRALR----TEELPE-TCCELCNLQTIEIEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPKGIERLTCLR 659 (938)
Q Consensus 586 ~~~~l~~Lr~L~----i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 659 (938)
.|.++ +|+.+. +..++. .|.+ .+|+.+.+.. . +..++. .|..|++|+.+++.+|.+..+|.......+|+
T Consensus 131 aF~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred hcccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 34442 455444 334443 2444 4677777765 2 555553 47778888888887777777776543345555
Q ss_pred cCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCcccccccc
Q 035647 660 TLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLE 739 (938)
Q Consensus 660 ~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 739 (938)
.+.+.. . +. ......+..+.+|+.+.+..+ +..
T Consensus 207 ~l~lp~------------~------l~------------------~I~~~aF~~~~~L~~l~l~~~-l~~---------- 239 (401)
T 4fdw_A 207 EVLLPV------------T------LK------------------EIGSQAFLKTSQLKTIEIPEN-VST---------- 239 (401)
T ss_dssp EEECCT------------T------CC------------------EECTTTTTTCTTCCCEECCTT-CCE----------
T ss_pred EEEeCC------------c------hh------------------eehhhHhhCCCCCCEEecCCC-ccC----------
Confidence 443210 0 00 011233455666666666432 110
Q ss_pred ccccHHHHhhhcCCCCCcceEEEeecCCCCCC-CchhhhccCccEEEEeCCCCC----CCCC--CCCCCCCccceeeccc
Q 035647 740 NEVNHEAISEALQAPPNIESLEMCYYKGKTAL-PSWVVLLNKLKKLYLTHCNNC----EIMP--SLGKLPSLEILQIIGM 812 (938)
Q Consensus 740 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~----~~l~--~l~~l~~L~~L~L~~~ 812 (938)
.-...+.. .+|+.+.|. +.+.. + +..+..+++|+.+.+.++... ..++ .+..+++|+.+.|.+
T Consensus 240 ------I~~~aF~~-~~L~~i~lp-~~i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 240 ------IGQEAFRE-SGITTVKLP-NGVTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp ------ECTTTTTT-CCCSEEEEE-TTCCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred ------cccccccc-CCccEEEeC-CCccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 00122333 578888884 33444 4 345668888999998887543 1122 577889999999874
Q ss_pred cCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCC
Q 035647 813 RSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRS 891 (938)
Q Consensus 813 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l 891 (938)
+++.++... +.++++|+.+.|..+ +..+. ...|..+ +|+.|.+.+|. +..++ ..+.++
T Consensus 310 -~i~~I~~~a--------------F~~c~~L~~l~lp~~--l~~I~--~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~ 368 (401)
T 4fdw_A 310 -SIRILGQGL--------------LGGNRKVTQLTIPAN--VTQIN--FSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGF 368 (401)
T ss_dssp -TCCEECTTT--------------TTTCCSCCEEEECTT--CCEEC--TTSSSSS-CCCEEEECCSS-CCBCCCSSCCCS
T ss_pred -ceEEEhhhh--------------hcCCCCccEEEECcc--ccEEc--HHhCCCC-CCCEEEEcCCC-CcccccccccCC
Confidence 366666532 457889999999664 45553 3346678 99999999884 44444 445566
Q ss_pred C-CccEEEEcCC
Q 035647 892 Q-KLKMLEIYNC 902 (938)
Q Consensus 892 ~-~L~~L~l~~c 902 (938)
+ +++.|.+-.+
T Consensus 369 ~~~l~~l~vp~~ 380 (401)
T 4fdw_A 369 PDDITVIRVPAE 380 (401)
T ss_dssp CTTCCEEEECGG
T ss_pred CCCccEEEeCHH
Confidence 4 6888888765
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.50 E-value=1.1e-07 Score=91.55 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=72.1
Q ss_pred eEEEEEEcCCCCCCcccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCCCCcchhccCCCcccEEeecCCCCCc
Q 035647 544 LRHSILFLGYNASLPVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRTEELPETCCELCNLQTIEIEECSNLR 623 (938)
Q Consensus 544 lr~l~l~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~L~L~~~~~l~ 623 (938)
.+.+++.++.+..+|..+. ++|+.|++++|. ..... |..+.++++|++|+|++|. +.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~--i~~~~------------------~~~~~~l~~L~~L~Ls~N~-l~ 67 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ--ITKLE------------------PGVFDRLTQLTRLDLDNNQ-LT 67 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCC------------------TTTTTTCTTCSEEECCSSC-CC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc--CCccC------------------hhhhcCcccCCEEECCCCC-cC
Confidence 3567778888887787653 788888888862 22111 3456677777777777776 66
Q ss_pred ccchh-hhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCC
Q 035647 624 RLPQR-IGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 624 ~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~ 670 (938)
.+|.. +..+++|++|++++|.+..+|+. +..+++|++|++..|....
T Consensus 68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 76665 46777788888887777777764 6777777777776665443
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.49 E-value=3.2e-07 Score=94.06 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=101.4
Q ss_pred Cccccc---hHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGR---DEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
.+|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......++|+++......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 457763 35566666655321 3467899999999999999999886 2223345677766442110
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCC--chhhhhhhccC-CCC-CEEEEEcCChH-----
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSK--WEPFHNCLMHG-LRG-SKILVTTRNEK----- 326 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~~----- 326 (938)
+ . . .+ +.+ .++.+||+||++.-.... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~------~----~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----S------T----A---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----C------G----G---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----H------H----H---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 0 0 00 111 456799999996533222 22343333221 112 25788776322
Q ss_pred ----HHHhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHHh
Q 035647 327 ----VVRMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIGS 390 (938)
Q Consensus 327 ----~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a~ 390 (938)
+...+.....+.+.+++.++..+++...+....... ..+....|++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHHH
Confidence 111112236899999999999999988764222111 234556788889998876655433
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=1.9e-06 Score=94.99 Aligned_cols=237 Identities=13% Similarity=0.154 Sum_probs=147.8
Q ss_pred ccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC----CCCcc-hhccCCCcccEEeecCCCCCcccchhhhccc
Q 035647 559 VCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR----TEELP-ETCCELCNLQTIEIEECSNLRRLPQRIGKLV 633 (938)
Q Consensus 559 ~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~----i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 633 (938)
.++.++ +|+.+.+..+ ....-..+|.++ +|+.+. +..++ ..|.++.+|+.+++..|. +..+|...-.+.
T Consensus 130 ~aF~~~-~L~~i~l~~~---i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~ 203 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG---LKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYA 203 (401)
T ss_dssp TTTTTC-CCSEEECCTT---CCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTC
T ss_pred hhcccC-CccEEEeCCC---ccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCc-ceEechhhEeec
Confidence 345565 7999988764 222234456663 577776 44555 468889999999999987 888888755579
Q ss_pred CCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccCc
Q 035647 634 NLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNLD 712 (938)
Q Consensus 634 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~ 712 (938)
+|+.+.+..+ +..++.. |.++++|+.+.+.. . +..+. ...+.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~------------~---l~~I~---------------------~~aF~ 246 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE------------N---VSTIG---------------------QEAFR 246 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCT------------T---CCEEC---------------------TTTTT
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCC------------C---ccCcc---------------------ccccc
Confidence 9999999854 7777654 77888888775421 0 00000 11122
Q ss_pred cccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCC-----CCCCchhhhccCccEEEEe
Q 035647 713 KKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGK-----TALPSWVVLLNKLKKLYLT 787 (938)
Q Consensus 713 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-----~~lp~~~~~l~~L~~L~L~ 787 (938)
. .+|+.+.+. +.+.. .-...|..+++|+.+.+.++... ..-+..+..|++|+.+.|.
T Consensus 247 ~-~~L~~i~lp-~~i~~----------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 247 E-SGITTVKLP-NGVTN----------------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp T-CCCSEEEEE-TTCCE----------------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred c-CCccEEEeC-CCccE----------------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 2 467777773 22221 01235677888888888877654 2123345678888888887
Q ss_pred CCCCCCCCC--CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccc
Q 035647 788 HCNNCEIMP--SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIA 865 (938)
Q Consensus 788 ~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 865 (938)
++ ...++ .+.++++|+.+.|.. +++.++... +.++ +|+.+.+.++ ....+. +..+.
T Consensus 309 ~~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~a--------------F~~~-~L~~l~l~~n-~~~~l~--~~~F~ 366 (401)
T 4fdw_A 309 ES--IRILGQGLLGGNRKVTQLTIPA--NVTQINFSA--------------FNNT-GIKEVKVEGT-TPPQVF--EKVWY 366 (401)
T ss_dssp TT--CCEECTTTTTTCCSCCEEEECT--TCCEECTTS--------------SSSS-CCCEEEECCS-SCCBCC--CSSCC
T ss_pred Cc--eEEEhhhhhcCCCCccEEEECc--cccEEcHHh--------------CCCC-CCCEEEEcCC-CCcccc--ccccc
Confidence 53 33333 577888888888854 366665432 3466 8888888876 233332 22344
Q ss_pred cCC-cccEEeecCC
Q 035647 866 VMP-QLISLELGSC 878 (938)
Q Consensus 866 ~l~-~L~~L~l~~c 878 (938)
.++ +++.|.+-.+
T Consensus 367 ~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 367 GFPDDITVIRVPAE 380 (401)
T ss_dssp CSCTTCCEEEECGG
T ss_pred CCCCCccEEEeCHH
Confidence 554 6777777654
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.41 E-value=1e-06 Score=84.94 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=64.2
Q ss_pred cceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCc
Q 035647 757 IESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSS 835 (938)
Q Consensus 757 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 835 (938)
-+.++++++.+.. +|..+. ++|+.|+|++|......| .++.+++|++|+|++|. ++.++...
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~------------- 76 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGV------------- 76 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------------
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhH-------------
Confidence 3678888888766 777553 788888888887655544 46777778888777754 44443321
Q ss_pred ccccCCccceeeccCccccccccccccccccCCcccEEeecCCc
Q 035647 836 SIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCS 879 (938)
Q Consensus 836 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 879 (938)
+..+++|++|+|++| .+..++ +..+..+++|+.|++++|+
T Consensus 77 -~~~l~~L~~L~L~~N-~l~~l~--~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 77 -FDKLTQLTQLDLNDN-HLKSIP--RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -TTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCSEEECCSSC
T ss_pred -hCCcchhhEEECCCC-ccceeC--HHHhccccCCCEEEeCCCC
Confidence 245666777777665 344333 1224566666666666664
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.7e-06 Score=94.32 Aligned_cols=194 Identities=10% Similarity=0.072 Sum_probs=112.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCC-CeEEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNF-DKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 257 (938)
.+++|+++.++.+..++... ....+.|+|++|+||||+|+.+++.......+ ..++.++.+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 56899999999999998543 22238999999999999999998852111111 12334444433232222 222
Q ss_pred HHHhcCC-CCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HHHhc-ccC
Q 035647 258 IEALEGS-APNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRMM-EST 334 (938)
Q Consensus 258 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~~-~~~ 334 (938)
...+... ....... .....-.+++-++++|++..-.......+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2222111 0000000 00011123456999999954433344556665655555667777776432 11111 123
Q ss_pred CeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHH
Q 035647 335 DVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTI 388 (938)
Q Consensus 335 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 388 (938)
..+.+.+++.++..+.+...+...+...+ .+..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 48899999999999999887643332122 345667999999999864443
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.38 E-value=5.6e-06 Score=89.56 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=105.1
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
-.+++|++..++.+..++..... .......|.|+|++|+|||++|+.+++. .... .+.++......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 35799999999999988864311 1123456899999999999999999875 2222 23333322111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC------------------CCCEEE
Q 035647 258 IEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL------------------RGSKIL 319 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 319 (938)
.......+.. ..+..+|++|++..-.......+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111111 2456788999995433333333444333321 124666
Q ss_pred EEcCChHH-HHhc-cc-CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 320 VTTRNEKV-VRMM-ES-TDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 320 vTtr~~~~-~~~~-~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
.+|..... ...+ .. ...+.+.+++.++..+++...+..... .-..+....|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66664321 1111 11 358999999999999999877643221 1123455678889999996554443
No 166
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.33 E-value=1.8e-06 Score=82.92 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=62.0
Q ss_pred cceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCc
Q 035647 757 IESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSS 835 (938)
Q Consensus 757 L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 835 (938)
.+.++++++.+.. +|..+ .++|+.|+|++|......| .++.+++|++|+|++|. ++.++..
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~-------------- 72 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAG-------------- 72 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT--------------
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChh--------------
Confidence 5678888887776 77654 3778888888886555544 46677777777777654 4433322
Q ss_pred ccccCCccceeeccCccccccccccccccccCCcccEEeecCCc
Q 035647 836 SIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCS 879 (938)
Q Consensus 836 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 879 (938)
.+..+++|++|+|++| .+..++ +..+..+++|+.|++++|+
T Consensus 73 ~f~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 73 VFDKLTQLTQLSLNDN-QLKSIP--RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSSC
T ss_pred hccCCCCCCEEECCCC-ccCEeC--HHHhcCCCCCCEEEeCCCC
Confidence 1235666666666665 334332 1224456666666666654
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.29 E-value=6e-06 Score=91.85 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=101.1
Q ss_pred CccccchHHH---HHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEM---NILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. ....| +.+++.. .....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~~--- 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVKE--- 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHHH---
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHHH---
Confidence 5689998888 6777777432 4567999999999999999999985 22222 2222211 11111
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEE-EcCChH--HHH-h
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILV-TTRNEK--VVR-M 330 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--~~~-~ 330 (938)
+......... ...+++.+|++|++..-.....+.+...+..+ ...+|. ||.+.. +.. .
T Consensus 91 ---------------ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 91 ---------------IREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp ---------------HHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred ---------------HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 1111111111 11367889999999765555556666666542 234444 444432 111 1
Q ss_pred cccCCeEecCCCChHHHHHHHHHhhcCCCCC---CCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 331 MESTDVISIKELSEQECWWLFKRFAFFGRPP---SECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 331 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
.....++.+.+++.++..+++.+.+...... ....-..+....|++.++|.+-.+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 1234588999999999999998876431110 11112234556688888888865443
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=9.2e-06 Score=90.58 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=96.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCC--CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNF--DKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
...+.|+|.+|+||||||+.+++. ....+ ..+++++.. .+...+...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 567999999999999999999985 32222 234555433 3344455444422 11 12233333
Q ss_pred CceeeEEeCCCCCCCc--CCchhhhhhhcc-CCCCCEEEEEcCChH---------HHHhcccCCeEecCCCChHHHHHHH
Q 035647 284 GKRFFLVLDDVWTDDY--SKWEPFHNCLMH-GLRGSKILVTTRNEK---------VVRMMESTDVISIKELSEQECWWLF 351 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf 351 (938)
.++-+|++||++.-.. ...+.+...+.. ...|..||+||.... +...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3678999999954321 112234443322 234678999888632 2222333467899999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 352 KRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
.+.+.......+. +....|++.++|.+-.+..
T Consensus 273 ~~~~~~~~~~i~~----e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHGELPE----EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTCCCCT----THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCCCCCH----HHHHHHHHhcCCCHHHHHH
Confidence 8876422211111 2345688888888865443
No 169
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=8.7e-08 Score=103.73 Aligned_cols=144 Identities=19% Similarity=0.138 Sum_probs=87.3
Q ss_pred hhcCCCCCcceEEEeecCCCCCCCchhhhccCccEEEEeCCCCCC-CCCCC--CCCCCccceeeccccCceEeCc-cccc
Q 035647 749 EALQAPPNIESLEMCYYKGKTALPSWVVLLNKLKKLYLTHCNNCE-IMPSL--GKLPSLEILQIIGMRSVKRVGD-EFWG 824 (938)
Q Consensus 749 ~~l~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~l~~l--~~l~~L~~L~L~~~~~l~~~~~-~~~~ 824 (938)
..+..+|+|+.|.|++|.... +|. + .+++|++|+|..|.... .+..+ ..+|+|++|+|+.+.+. ..+. .+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~-~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED-YGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGG-GTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccc-cccchhHHH
Confidence 445667899999999885444 555 3 37899999998875321 11122 36889999988632211 0000 0000
Q ss_pred CCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccC-----CCcCCCCCCCccEEEE
Q 035647 825 IENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKS-----LPVDLLRSQKLKMLEI 899 (938)
Q Consensus 825 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l 899 (938)
... ......||+|+.|.+.+|.........-.....+|+|++|+|+.|. +.. ++..+.++++|+.|++
T Consensus 242 l~~------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 242 FRP------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp TGG------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred HHH------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEEC
Confidence 000 0011368999999998875432221100112368999999998774 543 4555567889999999
Q ss_pred cCCc
Q 035647 900 YNCP 903 (938)
Q Consensus 900 ~~c~ 903 (938)
++|.
T Consensus 315 ~~n~ 318 (362)
T 2ra8_A 315 KYNY 318 (362)
T ss_dssp CSBB
T ss_pred CCCc
Confidence 9885
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=5.7e-06 Score=94.56 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=108.7
Q ss_pred CccccchHHHHHHHHHhhcccC-----------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG-----------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN 247 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 247 (938)
.+++|++..++++..++..... ......+.+.|+|++|+||||+|+.+++.. .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 5799999999999999865210 001134689999999999999999999862 22 3445555554
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccHHHHHHHH--HHhhcCceeeEEeCCCCCCCcCC---chhhhhhhccCCCCCEEEEEc
Q 035647 248 FDEFRIAKAIIEALEGSAPNLGELQSLLQHI--YASIVGKRFFLVLDDVWTDDYSK---WEPFHNCLMHGLRGSKILVTT 322 (938)
Q Consensus 248 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l--~~~l~~~~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~iivTt 322 (938)
.... .....+....... ......... .....+++.+||+|+++.-.... +..+...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 4332 2222222111100 000000000 00113568899999995432211 23344444332 33455555
Q ss_pred CChH---HHHhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch-hHHHHHHh
Q 035647 323 RNEK---VVRMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP-LAAKTIGS 390 (938)
Q Consensus 323 r~~~---~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~a~ 390 (938)
.... +.........+.+.+++.++..+++...+...+...++ +....|++.++|.+ -++..+..
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHHTH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHHHH
Confidence 4322 22211224578999999999999987766433222222 23456888899854 45555443
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=9.8e-06 Score=89.64 Aligned_cols=297 Identities=13% Similarity=0.055 Sum_probs=151.3
Q ss_pred CceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC----CCCcch-hccCCCcccEEe
Q 035647 542 EELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR----TEELPE-TCCELCNLQTIE 615 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~----i~~lp~-~i~~L~~L~~L~ 615 (938)
.+++.+.+..+ +..+ ..++.+|++|+.+.+..+ ....-...|.++..|+.+. +..++. .+.++..+....
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS---VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC---ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 34555555433 2222 234566777777766542 1112234555666666554 222221 233333222222
Q ss_pred ecCCCCCcccc-hhhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEE
Q 035647 616 IEECSNLRRLP-QRIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLI 693 (938)
Q Consensus 616 L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~ 693 (938)
... ...+. ..+.++++|+.+.+.++ +..++.. |.++.+|+.+.+..+ .... ....+.++..|..+..
T Consensus 147 ~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I---~~~~F~~~~~L~~i~~--- 215 (394)
T 4fs7_A 147 PEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKII---RDYCFAECILLENMEF--- 215 (394)
T ss_dssp CTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEE---CTTTTTTCTTCCBCCC---
T ss_pred Ccc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEe---Cchhhccccccceeec---
Confidence 222 22222 23678888999888654 3445443 677788887765321 0000 0112222333322210
Q ss_pred EcCCCCCCChhhhhhccCccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCCc
Q 035647 694 IRGLGNVTSIDEAKTTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALPS 773 (938)
Q Consensus 694 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp~ 773 (938)
. .... ..........+|+.+.+..+. .. .-...+..+.+|+.+.+..+...- -..
T Consensus 216 -~--~~~~----~i~~~~~~~~~l~~i~ip~~~-~~----------------i~~~~f~~~~~l~~~~~~~~~~~i-~~~ 270 (394)
T 4fs7_A 216 -P--NSLY----YLGDFALSKTGVKNIIIPDSF-TE----------------LGKSVFYGCTDLESISIQNNKLRI-GGS 270 (394)
T ss_dssp -C--TTCC----EECTTTTTTCCCCEEEECTTC-CE----------------ECSSTTTTCSSCCEEEECCTTCEE-CSC
T ss_pred -C--CCce----EeehhhcccCCCceEEECCCc-ee----------------cccccccccccceeEEcCCCccee-ecc
Confidence 0 0000 001112234566666663221 10 001235567778888876654321 233
Q ss_pred hhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccc
Q 035647 774 WVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYE 853 (938)
Q Consensus 774 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 853 (938)
.+..+..|+.+........ -..+..+.+|+.+.+.+ +++.++... +.++.+|+.++|.. .
T Consensus 271 ~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~a--------------F~~c~~L~~i~lp~--~ 330 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEA--------------FESCTSLVSIDLPY--L 330 (394)
T ss_dssp TTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTT--------------TTTCTTCCEECCCT--T
T ss_pred ccccccccceeccCceeec--ccccccccccccccccc--ccceechhh--------------hcCCCCCCEEEeCC--c
Confidence 4556777877777654211 12456677888887754 355555432 35677888888864 2
Q ss_pred cccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCC
Q 035647 854 WEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 854 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c 902 (938)
+..+. ...+..+.+|+.+.+..+ ++.++ ..+.+|++|+.+++..+
T Consensus 331 v~~I~--~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEEIG--KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEEC--TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEEh--HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 44443 334667888888888654 66554 45777888888888654
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=3.2e-05 Score=80.10 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=95.9
Q ss_pred CccccchHHHHHHHHHhhcccCCC------CCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEE------QHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.+++|.+..++.+.+.+..-.... -...+.+.|+|++|+|||++|+.+++. ... ..+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQV---PFLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---CEEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEechHHHHhh--
Confidence 568999988887766543211000 123456889999999999999999985 222 2344444432110
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCC------------CcCCchhhhhh---hcc--CCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTD------------DYSKWEPFHNC---LMH--GLRG 315 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~~~l~~~---l~~--~~~g 315 (938)
. ...........+.......+.+|++|+++.- .......+... +.. ...+
T Consensus 79 ------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 ------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp ------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 0 0011111112222222345789999999542 11111222222 222 1234
Q ss_pred CEEEEEcCChHHHH-hc-c---cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 316 SKILVTTRNEKVVR-MM-E---STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 316 s~iivTtr~~~~~~-~~-~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
..||.||....... .+ . -...+.+...+.++..+++...+...... . ........+++.+.|.+-
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~--~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-Q--SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-B--THHHHHHHHHHTCTTCCH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-c--chhhHHHHHHHHCCCCCH
Confidence 56677776543211 11 1 13577889999999999998876432221 1 112233668888877653
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.18 E-value=3.6e-06 Score=82.09 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++||+.+++.+.+.+... ..+.+.|+|.+|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998542 3456789999999999999999875
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.18 E-value=1.6e-05 Score=83.51 Aligned_cols=184 Identities=17% Similarity=0.175 Sum_probs=99.8
Q ss_pred CCccccchHHHHHHHHHhhcccCC-------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGE-------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDE 250 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 250 (938)
..+++|.+..++++.+.+...-.. +-...+.+.|+|++|+|||++|+.+++.. .. ..+.+....-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~---~~~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NA---TFIRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TC---EEEEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CC---CEEEEehHHHH--
Confidence 457999999999998887432000 00234568999999999999999998852 11 22333332211
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHH-HhhcCceeeEEeCCCCCC-----------CcCCchhhhhhhc-----cCC
Q 035647 251 FRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIVGKRFFLVLDDVWTD-----------DYSKWEPFHNCLM-----HGL 313 (938)
Q Consensus 251 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~ 313 (938)
... ..........+. ......+.+|+||++..- +......+...+. ...
T Consensus 89 ------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 ------------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 010 111112222222 222356789999999431 0000112222221 122
Q ss_pred CCCEEEEEcCChHHHH-hc----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC-chhHHHH
Q 035647 314 RGSKILVTTRNEKVVR-MM----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG-LPLAAKT 387 (938)
Q Consensus 314 ~gs~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 387 (938)
.+..||.||....... .. .-...+.+...+.++..+++...+..... ...... ..+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNL----EEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCH----HHHHHHcCCCCHHHHHH
Confidence 3567788887543211 11 11347899999999999999887643322 112223 346666666 4434443
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.18 E-value=1.1e-05 Score=88.54 Aligned_cols=196 Identities=12% Similarity=0.022 Sum_probs=103.0
Q ss_pred CCccccchHHHHHH---HHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeC----CCCCH
Q 035647 178 VSEVRGRDEEMNIL---KSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVS----DNFDE 250 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~~~ 250 (938)
..+|+|++..++.+ ...+.... ...+.+.|+|++|+|||++|+.+++... ... ..+.+... .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccC-Ccccccchhhhhcccch
Confidence 35799999887764 44443321 1246899999999999999999998622 111 12223221 22333
Q ss_pred HHHHHHHHHHhcC---------------------C-------CCC-----cccHHHHHHHHHHhh--cCc----eeeEEe
Q 035647 251 FRIAKAIIEALEG---------------------S-------APN-----LGELQSLLQHIYASI--VGK----RFFLVL 291 (938)
Q Consensus 251 ~~~~~~i~~~l~~---------------------~-------~~~-----~~~~~~~~~~l~~~l--~~~----~~LlVl 291 (938)
...+.+....... . ... ............... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3444433332110 0 000 111222222222211 133 459999
Q ss_pred CCCCCCCcCCchhhhhhhccCCCCCEEEEEcCC-----------------hHHHHhcccCCeEecCCCChHHHHHHHHHh
Q 035647 292 DDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRN-----------------EKVVRMMESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 292 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
|++..-.....+.+...+...... .++++|.. +.+.. ....+.+.+++.++..+++...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHH
Confidence 999554333344445444333223 34444431 11222 2345899999999999999877
Q ss_pred hcCCCCCCCchhHHHHHHHHHhhcC-CchhHHHHH
Q 035647 355 AFFGRPPSECEQLVEIGQKIVGNCK-GLPLAAKTI 388 (938)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~-g~PLai~~~ 388 (938)
+....... ..+....|++.+. |.|-.+..+
T Consensus 272 ~~~~~~~~----~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 272 CEEEDVEM----SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHHTTCCB----CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCCC----CHHHHHHHHHHhcCCCHHHHHHH
Confidence 64322211 1344566788887 777654433
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1e-05 Score=88.08 Aligned_cols=196 Identities=11% Similarity=0.075 Sum_probs=105.8
Q ss_pred CccccchHHHHHHHHHh-hcccCCCCCceEEEEEEecCCChHHHHHHHHHccc-cc-cc--CCC----------------
Q 035647 179 SEVRGRDEEMNILKSKL-LCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDS-CV-IN--NFD---------------- 237 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~-~~--~f~---------------- 237 (938)
.+++|++..++.+..++ ... .... +.|+|++|+||||+|+.++... .. .+ .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 56899999999888877 322 1233 8999999999999999987731 00 00 000
Q ss_pred ----eEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccC
Q 035647 238 ----KRMWVCVSDNF-DEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHG 312 (938)
Q Consensus 238 ----~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~ 312 (938)
..+.+..+... ......+++++.+....+- .... .+. .+.+++-++|+|++..-+....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 01111111100 0000122222222211000 0000 000 02346779999999654444445566666554
Q ss_pred CCCCEEEEEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 313 LRGSKILVTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 313 ~~gs~iivTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
..+..+|++|.... +...+ .....+.+.+++.++..+.+...+...+...+. .+....|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 55678888877532 22222 234689999999999999998776332211110 2345668899999987554443
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=2.3e-07 Score=100.35 Aligned_cols=173 Identities=18% Similarity=0.080 Sum_probs=103.9
Q ss_pred HhhhcCCCCCcceEEEeecCCC---------CCCCchhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceE
Q 035647 747 ISEALQAPPNIESLEMCYYKGK---------TALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKR 817 (938)
Q Consensus 747 ~~~~l~~~~~L~~L~L~~~~~~---------~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~ 817 (938)
+..++..+++|+.|.|...... +.++.++..+|+|+.|.|++|.... ++.+ .+++|++|+|..|. +..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~-l~~ 207 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGG-LPD 207 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSB-CCH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCC-CCh
Confidence 3444555678888888654321 1255556688999999999984333 3344 38999999998765 211
Q ss_pred eCcccccCCCCCCCCCCcccccCCccceeeccCccc-------cccccccccccccCCcccEEeecCCccccCCCcC---
Q 035647 818 VGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYE-------WEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVD--- 887 (938)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~--- 887 (938)
-..... ....+|+|+.|+|+.+.+ +..+.... ....+|+|+.|++++|......+..
T Consensus 208 ~~l~~l------------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l-~~~~~p~Lr~L~L~~~~i~~~~~~~la~ 274 (362)
T 2ra8_A 208 SVVEDI------------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF-SKDRFPNLKWLGIVDAEEQNVVVEMFLE 274 (362)
T ss_dssp HHHHHH------------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS-CTTTCTTCCEEEEESCTTHHHHHHHHHH
T ss_pred HHHHHH------------HHccCCCCcEEEEeccccccccchhHHHHHHHH-hcCCCCCcCEEeCCCCCCchHHHHHHHh
Confidence 100000 012689999999864211 11111100 0136899999999998643222111
Q ss_pred CCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccccccCC
Q 035647 888 LLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGHNVQGG 936 (938)
Q Consensus 888 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~~~~~~ 936 (938)
...+++|++|+|+.|. +...-..........++++..+.+++|.|+.+
T Consensus 275 a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 275 SDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1247899999999884 33321111112224567899999999998764
No 178
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.09 E-value=1.5e-05 Score=85.55 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=102.1
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
-.+++|++..++.+..++... ...+++.+.|++|+|||++|+.+++.. . ..++.++.+.. ... ..+..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~~~-~i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-KID-FVRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-CHH-HHHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-CHH-HHHHH
Confidence 357999999999999998643 234578888999999999999998752 1 23445554332 111 11111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHh--hcCceeeEEeCCCCCCC-cCCchhhhhhhccCCCCCEEEEEcCChHH-HHhc-c
Q 035647 258 IEALEGSAPNLGELQSLLQHIYAS--IVGKRFFLVLDDVWTDD-YSKWEPFHNCLMHGLRGSKILVTTRNEKV-VRMM-E 332 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~~-~~~~-~ 332 (938)
+.. .... ..+++.++|+|++..-. .+..+.+...+.....+.++|+||..... ...+ .
T Consensus 93 ~~~-----------------~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 93 LTN-----------------FASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHH-----------------HHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHH-----------------HHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 111 1111 12478899999995433 23344455544443446788888876431 1111 1
Q ss_pred cCCeEecCCCChHHHHHH-------HHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 333 STDVISIKELSEQECWWL-------FKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 333 ~~~~~~l~~L~~~ea~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
....+.+.+++.++-.++ +...+......... .+....|++.++|.+..+.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHH
Confidence 134799999998884333 22222111111111 2445668888888876433
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.07 E-value=3.2e-05 Score=82.90 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=87.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVG 284 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 284 (938)
....+.|+|++|+||||||+.+++... ..-..++++++. .+...+...+... .... +...+ .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHh-c
Confidence 345789999999999999999998521 111234555432 3333444333211 1111 12222 2
Q ss_pred ceeeEEeCCCCCCCc--CCchhhhhhhcc-CCCCCEEEEEcCChH---------HHHhcccCCeEecCCCChHHHHHHHH
Q 035647 285 KRFFLVLDDVWTDDY--SKWEPFHNCLMH-GLRGSKILVTTRNEK---------VVRMMESTDVISIKELSEQECWWLFK 352 (938)
Q Consensus 285 ~~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------~~~~~~~~~~~~l~~L~~~ea~~lf~ 352 (938)
+..+|++||+..-.. .....+...+.. ...+..||+||.... +...+.....+++.+ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999954321 112223333321 123567888876432 222223335789999 9999999998
Q ss_pred HhhcCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 353 RFAFFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
..+.......+ .+....|++.+ |.+-
T Consensus 177 ~~~~~~~~~l~----~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNLELR----KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTCCCC----HHHHHHHHHHC-SSHH
T ss_pred HHHHhcCCCCC----HHHHHHHHHhC-CCHH
Confidence 87643222112 24455677777 6654
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.06 E-value=2.2e-05 Score=83.57 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=89.6
Q ss_pred ccccchHHHHHHHHHhhccc--------C-CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCC--eEEEEEeCCCC
Q 035647 180 EVRGRDEEMNILKSKLLCEF--------G-EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD--KRMWVCVSDNF 248 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~--------~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~ 248 (938)
.++|.+..++.+.+.+.... + ........+.|+|.+|+|||++|+.+++......... ..+.++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence 48899888888877654210 0 0022455789999999999999998887522211111 233333211
Q ss_pred CHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCC---------CcCCchhhhhhhccCCCCCEEE
Q 035647 249 DEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTD---------DYSKWEPFHNCLMHGLRGSKIL 319 (938)
Q Consensus 249 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ii 319 (938)
+...... .........+... +..+|++|+++.- .......+...+.....+..||
T Consensus 110 ------------l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 110 ------------LVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp ------------TCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred ------------hhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 1111111 1111111222221 3469999999532 2222344555555555677888
Q ss_pred EEcCChHHHHh------c-c-cCCeEecCCCChHHHHHHHHHhhc
Q 035647 320 VTTRNEKVVRM------M-E-STDVISIKELSEQECWWLFKRFAF 356 (938)
Q Consensus 320 vTtr~~~~~~~------~-~-~~~~~~l~~L~~~ea~~lf~~~~~ 356 (938)
+||........ + . ....+.+++++.++-.+++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 88865432111 1 1 136899999999999999988764
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.06 E-value=5.3e-05 Score=78.88 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=89.4
Q ss_pred CccccchHHHHHHHHH-------hhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSK-------LLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~-------L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
..++|+...++++... +... .....+.+.|+|++|+|||++|+.+++. . .+. .+.+.....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~--~~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--S--NFP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--H--TCS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--h--CCC-EEEEeCHHH----
Confidence 3577887777766663 2211 1235778999999999999999999985 2 222 222332211
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCC------CcCCchhhhhhhc---c----CCCCCEE
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTD------DYSKWEPFHNCLM---H----GLRGSKI 318 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~~~l~~~l~---~----~~~gs~i 318 (938)
+.+. ............+......++.+|++|+++.- .......+...+. . ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00000111122222233466889999998431 1111122222221 1 1223346
Q ss_pred EEEcCChHHHHh--c-cc-CCeEecCCCCh-HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC
Q 035647 319 LVTTRNEKVVRM--M-ES-TDVISIKELSE-QECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG 380 (938)
Q Consensus 319 ivTtr~~~~~~~--~-~~-~~~~~l~~L~~-~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 380 (938)
|.||........ + .. ...+.+++++. ++-.+++.+.. ... .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-----~~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-----NFK----DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-----CSC----HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-----CCC----HHHHHHHHHHhcC
Confidence 777776654332 1 11 45788999988 66666665431 111 2345567777777
No 182
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.02 E-value=1.4e-05 Score=86.86 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=65.0
Q ss_pred ceEEEeec-CCCCCCCchhhhccCccEEEEeC-CCCCCCCC-CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCC
Q 035647 758 ESLEMCYY-KGKTALPSWVVLLNKLKKLYLTH-CNNCEIMP-SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSS 834 (938)
Q Consensus 758 ~~L~L~~~-~~~~~lp~~~~~l~~L~~L~L~~-~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 834 (938)
..++++++ .+.. +|. +..+++|+.|+|++ |.....++ .++.+++|+.|+|++|. ++.++..
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~------------- 74 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPD------------- 74 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTT-------------
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHH-------------
Confidence 34577776 6665 888 88888888888886 65444443 47778888888887764 5555432
Q ss_pred cccccCCccceeeccCccccccccccccccccCCcccEEeecCCc
Q 035647 835 SSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCS 879 (938)
Q Consensus 835 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 879 (938)
.+..+++|+.|+|++| .+..++. ..+..++ |+.|+|.+|+
T Consensus 75 -~~~~l~~L~~L~l~~N-~l~~~~~--~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 75 -AFHFTPRLSRLNLSFN-ALESLSW--KTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp -GGGSCSCCCEEECCSS-CCSCCCS--TTTCSCC-CCEEECCSSC
T ss_pred -HhcCCcCCCEEeCCCC-ccceeCH--HHcccCC-ceEEEeeCCC
Confidence 2346777788888776 4454432 1122333 7777777764
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=6.5e-05 Score=80.61 Aligned_cols=171 Identities=11% Similarity=0.049 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc--------------------cCCCeEEEEEe
Q 035647 185 DEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI--------------------NNFDKRMWVCV 244 (938)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~ 244 (938)
++..+.+...+... .-.+.+.++|++|+|||++|+.+++...-. .+++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 44566666666432 235679999999999999999998752110 0122 223322
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-----cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEE
Q 035647 245 SDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI-----VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKIL 319 (938)
Q Consensus 245 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 319 (938)
.. ......+++.. .+.+.+ .+++-++|+|+++.-.....+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 00111222222 222222 2567899999996544444556766666555567777
Q ss_pred EEcCChH-HHHhc-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 320 VTTRNEK-VVRMM-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 320 vTtr~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
++|.... +...+ .....+.+.+++.++..+++.+.. ..+ .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776543 22222 234689999999999999998775 111 2344668899999997665543
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.00 E-value=4.8e-06 Score=90.46 Aligned_cols=101 Identities=17% Similarity=0.008 Sum_probs=71.4
Q ss_pred EEEEcC-CCCCCcccccCCCCceEEEEec-CCCcchhhhhhhhhccCcccccCCCCcc-hhccCCCcccEEeecCCCCCc
Q 035647 547 SILFLG-YNASLPVCIYNAKKLRSLLIYS-SLYDLSAVLRYFFDQLTCLRALRTEELP-ETCCELCNLQTIEIEECSNLR 623 (938)
Q Consensus 547 l~l~~~-~~~~~~~~~~~l~~Lr~L~l~~-~~~~~~~~l~~~~~~l~~Lr~L~i~~lp-~~i~~L~~L~~L~L~~~~~l~ 623 (938)
++..++ .+..+|. +..+++|+.|+|++ |. + ..+| ..|.+|.+|+.|+|++|. +.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~---l------------------~~~~~~~~~~l~~L~~L~l~~N~-l~ 69 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH---L------------------QHLELRDLRGLGELRNLTIVKSG-LR 69 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS---C------------------CEECGGGSCSCCCCSEEECCSSC-CC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC---C------------------CCcChhHhccccCCCEEECCCCc-cc
Confidence 455565 6777888 88888899999985 52 1 2223 457778888888888887 66
Q ss_pred ccch-hhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCC
Q 035647 624 RLPQ-RIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRG 670 (938)
Q Consensus 624 ~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~ 670 (938)
.+|+ .|++|++|++|+|++|.+..+|+.+.....|+.|++..|....
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 6554 5688888888888888888888765443347877776665544
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=3.5e-05 Score=83.19 Aligned_cols=176 Identities=10% Similarity=0.094 Sum_probs=103.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCC-eEEEEEeCCCCCHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFD-KRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 257 (938)
..++|.+..++.+...+... ....+.++|++|+||||+|+.+++... ...+. .+.-++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 45889999999888888532 222389999999999999999987521 11111 122222222111
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHh------hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH-HHHh
Q 035647 258 IEALEGSAPNLGELQSLLQHIYAS------IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK-VVRM 330 (938)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~l~~~------l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-~~~~ 330 (938)
.+...+.+... +.+.+-++|+|++..-.....+.+...+......+++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 11111112111 123467899999954333344556655555455667777776432 1111
Q ss_pred c-ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHH
Q 035647 331 M-ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAK 386 (938)
Q Consensus 331 ~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 386 (938)
+ .....+.+.+++.++..+.+.+.+........ .+..+.|++.++|.+--+.
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 1 22347899999999999988776632221111 2445668888899887443
No 186
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.99 E-value=4.8e-06 Score=77.36 Aligned_cols=115 Identities=15% Similarity=0.030 Sum_probs=68.7
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIE 259 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 259 (938)
+++|+...++++.+.+..-.. ...-|.|+|.+|+|||++|+.+++... +.... .+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc---------
Confidence 578999999999988754321 223478999999999999999987521 11222 23 666543222
Q ss_pred HhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 260 ALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
..... .+.. ...-.|++|++..-.......+...+.......+||.||...
T Consensus 66 ---------~~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SCHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 11111 1111 133578999996544444445666564444566888887753
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.95 E-value=0.0001 Score=78.69 Aligned_cols=187 Identities=16% Similarity=0.071 Sum_probs=102.7
Q ss_pred CCccccchHHHHHHHHHhhccc------CCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEF------GEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
-.+++|.+..++.+.+.+.... .......+-|.++|++|+|||+||+.+++. .... .+.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------
Confidence 3578999999999988773110 001123467999999999999999999985 2222 2333321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCCc-------CC----chhhhhhhc---cCCCCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDDY-------SK----WEPFHNCLM---HGLRGS 316 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------~~----~~~l~~~l~---~~~~gs 316 (938)
.+ . .. .....+.....+.... ..++.+|+||++..-.. .. ...+...+. ....+.
T Consensus 86 ~l----~----~~--~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----V----SK--WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----H----TT--TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----h----hc--ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 1 11 0111222222332222 35678999999943111 01 122222222 223455
Q ss_pred EEEEEcCChHHH-Hhc--ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC-chhHHHHHH
Q 035647 317 KILVTTRNEKVV-RMM--ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG-LPLAAKTIG 389 (938)
Q Consensus 317 ~iivTtr~~~~~-~~~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~a 389 (938)
.||.||...... ..+ .-...+.+...+.++-.+++..++......... .....|++.+.| .+-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 666677653221 111 123577888899999999999877443221122 234568888877 454454444
No 188
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.94 E-value=9.4e-05 Score=81.68 Aligned_cols=303 Identities=10% Similarity=0.059 Sum_probs=166.7
Q ss_pred ccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccCC----CCcch-hccCCCcccEEeecCCCCCcccch-hhhcc
Q 035647 559 VCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALRT----EELPE-TCCELCNLQTIEIEECSNLRRLPQ-RIGKL 632 (938)
Q Consensus 559 ~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~i----~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L 632 (938)
.++.+|.+|+++.+..+ ....-..+|.++.+|+.+++ ..++. .+.++.+|+.+.+..+ +..+.. .+..+
T Consensus 65 ~AF~~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc--eeeecceeeecc
Confidence 45778999999998653 22233467888888888873 33432 4666777777666543 333332 24444
Q ss_pred cCCCeEEeCCccccccC-ccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEEcCCCCCCChhhhhhccC
Q 035647 633 VNLRHLIFVDVYLDYMP-KGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLIIRGLGNVTSIDEAKTTNL 711 (938)
Q Consensus 633 ~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 711 (938)
..+....... ...+. ..|.++++|+.+.+.... ... ....+.++..|..+.. . .+ +.......+
T Consensus 140 ~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I---~~~~F~~c~~L~~i~l----~--~~---~~~I~~~~F 204 (394)
T 4fs7_A 140 DFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETL---HNGLFSGCGKLKSIKL----P--RN---LKIIRDYCF 204 (394)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEE---CTTTTTTCTTCCBCCC----C--TT---CCEECTTTT
T ss_pred cccccccCcc--ccccchhhhcccCCCcEEecCCcc-cee---ccccccCCCCceEEEc----C--CC---ceEeCchhh
Confidence 4333332222 22222 247778888877553211 100 1123334444443220 0 01 111122345
Q ss_pred ccccccCceEEEecCCCCCCccccccccccccHHHHhhhcCCCCCcceEEEeecCCCCCCC-chhhhccCccEEEEeCCC
Q 035647 712 DKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQAPPNIESLEMCYYKGKTALP-SWVVLLNKLKKLYLTHCN 790 (938)
Q Consensus 712 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 790 (938)
..+..|+.+.+..+... +.+......+|+.+.+.... .. +. ..+..+.+|+.+.+..+.
T Consensus 205 ~~~~~L~~i~~~~~~~~------------------i~~~~~~~~~l~~i~ip~~~-~~-i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY------------------LGDFALSKTGVKNIIIPDSF-TE-LGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp TTCTTCCBCCCCTTCCE------------------ECTTTTTTCCCCEEEECTTC-CE-ECSSTTTTCSSCCEEEECCTT
T ss_pred ccccccceeecCCCceE------------------eehhhcccCCCceEEECCCc-ee-cccccccccccceeEEcCCCc
Confidence 56666766655332211 11123345678888876432 22 32 345578899999998764
Q ss_pred CCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCccccccccccccccccCCcc
Q 035647 791 NCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQL 870 (938)
Q Consensus 791 ~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L 870 (938)
..-....+..++.|+.+.+... .++.. .+..+.+|+.+.+..+ +..+. ...+..+.+|
T Consensus 265 ~~i~~~~F~~~~~l~~~~~~~~----~i~~~--------------~F~~~~~L~~i~l~~~--i~~I~--~~aF~~c~~L 322 (394)
T 4fs7_A 265 LRIGGSLFYNCSGLKKVIYGSV----IVPEK--------------TFYGCSSLTEVKLLDS--VKFIG--EEAFESCTSL 322 (394)
T ss_dssp CEECSCTTTTCTTCCEEEECSS----EECTT--------------TTTTCTTCCEEEECTT--CCEEC--TTTTTTCTTC
T ss_pred ceeeccccccccccceeccCce----eeccc--------------cccccccccccccccc--cceec--hhhhcCCCCC
Confidence 3222335667777877766542 12221 2457889999998753 45443 3346788999
Q ss_pred cEEeecCCccccCCC-cCCCCCCCccEEEEcCCcchHHhhccCCCCCcccccCcCceeeccc
Q 035647 871 ISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPILKERFKKDVGEDWAKIFHIPNIQINGH 931 (938)
Q Consensus 871 ~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~i~~i~~i~i~~~ 931 (938)
+.++|.++ ++.++ ..+.+|++|+.+.+..+ ++. .....+..-.++..|.+..+
T Consensus 323 ~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~----I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRK----IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCE----ECTTTBTTCTTCCEEEEEGG
T ss_pred CEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccE----ehHHHhhCCCCCCEEEECCC
Confidence 99999643 66665 56788999999998654 211 11223333345556666544
No 189
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.94 E-value=1.8e-07 Score=102.23 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=104.4
Q ss_pred ccccCceEEEecCCCCCCccccccccccccHHHHhhhcC-CCCCcceEEEeecCCCCCCC-chhhhccCccEEEEeCCCC
Q 035647 714 KKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAISEALQ-APPNIESLEMCYYKGKTALP-SWVVLLNKLKKLYLTHCNN 791 (938)
Q Consensus 714 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~ 791 (938)
+++|+.|++++|.++. .....+...+. .+++|++|+|++|.+...-. .....+++|+.|+|++|..
T Consensus 71 ~~~L~~L~Ls~n~l~~------------~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTP------------VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCH------------HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCCH------------HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 3578899999888762 11123344444 34689999999998754211 2223678999999999964
Q ss_pred CCCC-CCC-----CCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcccccccc--ccccc
Q 035647 792 CEIM-PSL-----GKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEWEEWE--IEKED 863 (938)
Q Consensus 792 ~~~l-~~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~ 863 (938)
.... ..+ ...++|++|+|++|. ++..+.... ...+..+++|++|+|++|. +++.. .....
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l----------~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~ 206 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVL----------MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ 206 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHH----------HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHH----------HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH
Confidence 3221 111 246789999999886 433211110 0112467889999999984 44321 11223
Q ss_pred cccCCcccEEeecCCccccC-----CCcCCCCCCCccEEEEcCCcc
Q 035647 864 IAVMPQLISLELGSCSKLKS-----LPVDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 864 ~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~ 904 (938)
+...++|+.|++++|. ++. ++..+..+++|++|++++|+-
T Consensus 207 L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 207 LDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 4567899999999985 432 334455678899999999953
No 190
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=1.9e-05 Score=76.45 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred chHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 035647 184 RDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEG 263 (938)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 263 (938)
+...++.+.+++..-. -...+.+.|+|++|+||||||+.+++.......+ .++++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 3444555555443221 1235689999999999999999998863212222 23344 344455555444432
Q ss_pred CCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchh--hhhhhccC-CCCCEEEEEcCCh
Q 035647 264 SAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEP--FHNCLMHG-LRGSKILVTTRNE 325 (938)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~~ 325 (938)
.... ..... + .+.-+|||||++....+.|.. +...+... ..|..||+||...
T Consensus 89 ~~~~-----~~~~~----~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKDT-----KFLKT----V-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCCS-----HHHHH----H-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chHH-----HHHHH----h-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2111 11121 1 256799999996433344432 33333221 2567899998853
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.90 E-value=0.00011 Score=79.65 Aligned_cols=188 Identities=11% Similarity=0.035 Sum_probs=102.2
Q ss_pred CccccchHHHHHHHHHhhccc--CC----CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEF--GE----EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~--~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.+++|.+..++.+.+.+...- +. .....+.|.|+|++|+|||++|+.+++.. . ...+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~---~~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--G---ATFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--T---CEEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--C---CeEEEEehHHhhc---
Confidence 468999999999988774210 00 01235678999999999999999998752 1 1234455432111
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCCc-----------CCchhhhhhhccC----CCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDDY-----------SKWEPFHNCLMHG----LRGS 316 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~~gs 316 (938)
.. ..........+.... ..++.+|+||++..-.. .....+...+... ..+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 011112222222222 35678999999932100 0111233223221 2244
Q ss_pred EEEEEcCChH-HHHhc--ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC-chhHHHHHHhh
Q 035647 317 KILVTTRNEK-VVRMM--ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG-LPLAAKTIGSL 391 (938)
Q Consensus 317 ~iivTtr~~~-~~~~~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~a~~ 391 (938)
.||.||.... +...+ .-...+.+...+.++..+++...+........ .+....|++.+.| .+-.|..+...
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5565665432 11111 11346788889999999998877643221111 2345668888887 55556555443
No 192
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=2.6e-06 Score=80.48 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=39.9
Q ss_pred cCCccceeeccCcccccccccccccccc----CCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCcchHH
Q 035647 839 AFPKLKKLTLRGLYEWEEWEIEKEDIAV----MPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPILKE 907 (938)
Q Consensus 839 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~ 907 (938)
.+++|++|+|++|..+++..... +.. .++|++|+|++|+.+++-- ..+.++++|++|++++||.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 45566666666665554432111 122 3478888888887665411 1244578888888888887654
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.86 E-value=0.00062 Score=72.38 Aligned_cols=188 Identities=16% Similarity=0.071 Sum_probs=100.4
Q ss_pred CccccchHHHHHHHHHhhcc---c-C--CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCE---F-G--EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~---~-~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.+++|.+..++.+.+.+... . - ......+.|.++|++|+|||+||+.+++... . ...+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~---~~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N---STFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-S---CEEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-C---CcEEEEEhHHHH----
Confidence 57899999888888766311 0 0 0112346789999999999999999998520 1 123334443211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCCc-------CCc----hhhhhhhcc---CCCCCE
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDDY-------SKW----EPFHNCLMH---GLRGSK 317 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------~~~----~~l~~~l~~---~~~gs~ 317 (938)
..... ..+.....+.... ..++.+|+||++..-.. ... ..+...+.. ...+..
T Consensus 84 ----------~~~~g--~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 ----------SKWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ----------CSSCC--SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ----------hhhhh--HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 01000 1112222222222 35688999999953100 001 112222221 123445
Q ss_pred EEEEcCChHHH-Hhc--ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCc-hhHHHHHHh
Q 035647 318 ILVTTRNEKVV-RMM--ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGL-PLAAKTIGS 390 (938)
Q Consensus 318 iivTtr~~~~~-~~~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~a~ 390 (938)
||.||...... ..+ .-...+.+...+.++..+++..++........ ......|++.+.|. +-.|..+.+
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55566543211 111 22357788888999999999887643221111 23456688888876 444555443
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.84 E-value=0.00012 Score=79.08 Aligned_cols=184 Identities=16% Similarity=0.053 Sum_probs=99.3
Q ss_pred CccccchHHHHHHHHHhhcc----cC--CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCE----FG--EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.+++|.+..++.+.+.+... .. ......+-|.|+|++|+|||+||+.+++.. .. ..+.++.. .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~---~~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NS---TFFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TC---EEEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CC---CEEEeeHH------H
Confidence 46899999999998876321 00 011234568899999999999999999852 21 22333322 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCCcC-----------Cchhhhhhhcc---CCCCCE
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDDYS-----------KWEPFHNCLMH---GLRGSK 317 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~ 317 (938)
+. ..... ..+.....+... -..++.+|+||++..-... ....+...+.. ...+..
T Consensus 120 l~--------~~~~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 LV--------SKWMG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred Hh--------hhhcc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 11100 011122222222 2357889999999532110 01222222221 123455
Q ss_pred EEEEcCChH-----HHHhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC-chhHHHHHH
Q 035647 318 ILVTTRNEK-----VVRMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG-LPLAAKTIG 389 (938)
Q Consensus 318 iivTtr~~~-----~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~a 389 (938)
||.||.... +.. .-...+.+...+.++..+++..++........ ......|++.+.| .+-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666676442 222 22457788889999999999887643321111 2334568888887 454455444
No 195
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.82 E-value=1.1e-06 Score=96.09 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=22.7
Q ss_pred hhhcCCCCCcceEEEeecCCCCC----CCchhhhccCccEEEEeCCC
Q 035647 748 SEALQAPPNIESLEMCYYKGKTA----LPSWVVLLNKLKKLYLTHCN 790 (938)
Q Consensus 748 ~~~l~~~~~L~~L~L~~~~~~~~----lp~~~~~l~~L~~L~L~~~~ 790 (938)
...+..+++|+.|+|++|.++.. ++..+...++|++|+|++|.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 34444555666666666665531 22223345666666666664
No 196
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.82 E-value=2.3e-05 Score=77.50 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=65.6
Q ss_pred ccccch----HHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 180 EVRGRD----EEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 180 ~~~Gr~----~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
+|++.+ ..++.+.+++..... ....+.+.|+|.+|+|||+||+.+++. .......++|+++. .+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFR 95 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHH
Confidence 455543 344555555543211 112268899999999999999999986 32333456676543 3344
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchh--hhh-hhccC-CCCCEEEEEcCCh
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEP--FHN-CLMHG-LRGSKILVTTRNE 325 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~~ 325 (938)
.+....... ........+. +.-+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 96 ~~~~~~~~~-----~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 96 ELKHSLQDQ-----TMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHC---C-----CCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccc-----hHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 443322211 1122222222 22499999996544344432 332 22221 2456788888843
No 197
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.81 E-value=6.1e-05 Score=91.69 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=82.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHccccc---ccCC--CeEEEEEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCV---INNF--DKRMWVCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~~~~~ 253 (938)
..++||+++++++...|... ...-+.++|.+|+|||++|+.+++.... .... ..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 45899999999999998643 2334789999999999999999885211 0011 2344444322100
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhc--CceeeEEeCCCCCCC--------cCCchhhhhhhccCCCCCEEEEEcC
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIV--GKRFFLVLDDVWTDD--------YSKWEPFHNCLMHGLRGSKILVTTR 323 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr 323 (938)
......+.......+...+. +++.+|++|++..-. .+..+.+...+.. .+..+|.+|.
T Consensus 240 ----------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ----------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ----------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 00011122333333333333 367899999995421 1111223333322 2345666665
Q ss_pred ChHHHH-----hc-ccCCeEecCCCChHHHHHHHHHh
Q 035647 324 NEKVVR-----MM-ESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 324 ~~~~~~-----~~-~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
...... .+ .....+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443211 11 11346899999999999998654
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.80 E-value=0.00054 Score=72.22 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=98.6
Q ss_pred CccccchHHHHHHHHHhhcccC------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.+++|.+..++.+.+.+..... .-....+.+.|+|++|+||||+|+.+++.. . ...+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~---~~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--S---ATFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--T---CEEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--C---CCeEEeeHHHHhh---
Confidence 5699999999999887743100 001134678999999999999999999852 1 1233444433211
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH-hhcCceeeEEeCCCCCCCcC-------Cch----hhhhhhccC-----CCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYA-SIVGKRFFLVLDDVWTDDYS-------KWE----PFHNCLMHG-----LRG 315 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~-------~~~----~l~~~l~~~-----~~g 315 (938)
.. ..........+.. ....++.+|++|++..-... .-. .+...+... +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 10 1111222222222 22356789999999431100 001 122222111 124
Q ss_pred CEEEEEcCChH-----HHHhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHH
Q 035647 316 SKILVTTRNEK-----VVRMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTI 388 (938)
Q Consensus 316 s~iivTtr~~~-----~~~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 388 (938)
..||.||.... +... -...+.+...+.++..+++...+........ .+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 45666776542 2221 2346777777888888888776533221111 2345568888888775 44444
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=0.00013 Score=76.76 Aligned_cols=149 Identities=15% Similarity=0.037 Sum_probs=91.3
Q ss_pred cchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc-cccCCCeEEEEEeCC-CCCHHHHHHHHHHH
Q 035647 183 GRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC-VINNFDKRMWVCVSD-NFDEFRIAKAIIEA 260 (938)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 260 (938)
|-++.++.+...+... +.+...++|++|+||||+|+.+++... .......+.+++..+ ....+.+ +++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 3455666777776432 367899999999999999999987410 111122334554332 2222221 222222
Q ss_pred hcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh-HHHHhcccCCeEec
Q 035647 261 LEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE-KVVRMMESTDVISI 339 (938)
Q Consensus 261 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~~~~~~~~~~~~~l 339 (938)
+... ...+++-++|+|+++.-.....+.+...+......+.+|++|... .+.+.+... .+++
T Consensus 74 ~~~~----------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYS----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSC----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhc----------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 2211 012456799999996655556667777777666677777776543 344444445 9999
Q ss_pred CCCChHHHHHHHHHhh
Q 035647 340 KELSEQECWWLFKRFA 355 (938)
Q Consensus 340 ~~L~~~ea~~lf~~~~ 355 (938)
.+++.++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 200
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.72 E-value=0.00045 Score=75.87 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=98.0
Q ss_pred CCccccchHHHHHHHHHhhcccC------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFG------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
-.+++|.+..++.+.+.+..... ......+-|.|+|.+|+|||++|+.+++. .. ...+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~---~~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SN---ATFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TT---CEEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hc---CcEEEeeHHHhhcc-
Confidence 35799999999999988732100 00113467899999999999999999875 21 12334443332110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCC-------cCCch----hhhhhhcc----CCCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDD-------YSKWE----PFHNCLMH----GLRG 315 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------~~~~~----~l~~~l~~----~~~g 315 (938)
. .+ ........+.... ...+.+|+||+++.-. ..... .+...+.. ....
T Consensus 188 -~-------~g-------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 -Y-------VG-------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -c-------cc-------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 00 0011122222222 2456799999994210 00011 12222211 1123
Q ss_pred CEEEEEcCChHHH-Hhc-cc-CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh-HHHHHH
Q 035647 316 SKILVTTRNEKVV-RMM-ES-TDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL-AAKTIG 389 (938)
Q Consensus 316 s~iivTtr~~~~~-~~~-~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~a 389 (938)
..||.||...... ..+ .. ...+.+...+.++..+++...+........ .+....|++.+.|..- +|..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556566543211 111 11 246888899999999999887643322111 2344568888877543 444443
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.68 E-value=0.00029 Score=79.20 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=79.7
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc---cccCC-C-eEEEEEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC---VINNF-D-KRMWVCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~-~~~wv~~~~~~~~~~~ 253 (938)
..++||+.+++.+...|... ...-+.++|.+|+|||++|+.+++... +-... . .++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 45999999999999998643 223457999999999999999987521 00011 1 12233322
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHHhc--
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMM-- 331 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~-- 331 (938)
....+. -......++..+. ..++.+|++|.- .+....+...+.. ...++|.+|........+
T Consensus 246 -----~~~~g~--~e~~~~~~~~~~~---~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKKVMDEIR---QAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHHHHHHHH---TCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHHHHHHHH---hcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 000000 0112222222222 256789999921 1222333333322 245677666654421111
Q ss_pred -----ccCCeEecCCCChHHHHHHHHHhh
Q 035647 332 -----ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 332 -----~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
.....+.+++.+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 123379999999999999998764
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.68 E-value=0.00066 Score=74.79 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=68.8
Q ss_pred hhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccCCccceeeccCcccc
Q 035647 775 VVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAFPKLKKLTLRGLYEW 854 (938)
Q Consensus 775 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 854 (938)
+..+.+|+.+.+.++...-.-..+..+++|+.+.+.. .++.++... +.++.+|+.+.|..+ +
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~a--------------F~~c~~L~~i~lp~~--v 322 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESV--------------FAGCISLKSIDIPEG--I 322 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTT--------------TTTCTTCCEEECCTT--C
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC--cccccCcee--------------ecCCCCcCEEEeCCc--c
Confidence 4456777777776543221222466777788777753 355555432 456788888888653 4
Q ss_pred ccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcCCcc
Q 035647 855 EEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYNCPI 904 (938)
Q Consensus 855 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 904 (938)
+.+. ...|..+.+|+.+.|-.+ ++.++ ..+.+|++|+.+++.++..
T Consensus 323 ~~I~--~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 323 TQIL--DDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CEEC--TTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cEeh--HhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee
Confidence 4443 334667888888888543 66665 4577888888888887743
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.67 E-value=0.00092 Score=74.54 Aligned_cols=189 Identities=16% Similarity=0.073 Sum_probs=98.7
Q ss_pred CCccccchHHHHHHHHHhhcc----cC--CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCE----FG--EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
-.+++|.+..++.+.+.+... .- ......+.|.|+|++|+|||+||+.+++... . ...+.++.+.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~---~~~~~v~~~~----- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N---STFFSISSSD----- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S---SEEEEECCC------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C---CCEEEEeHHH-----
Confidence 356899999999998876311 00 0012346789999999999999999998520 1 1222232221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc-------CCchhhhhhhc----c---CCCCCE
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY-------SKWEPFHNCLM----H---GLRGSK 317 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~~~l~~~l~----~---~~~gs~ 317 (938)
+. ....+. ....+....... -..++.+|+||++..-.. .....+...+. . ...+..
T Consensus 204 -l~----~~~~g~--~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LV----SKWLGE--SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HH----hhhcch--HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 111111 111222222222 135678999999953210 01111222121 1 124556
Q ss_pred EEEEcCChHHH-Hhc--ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC-chhHHHHHH
Q 035647 318 ILVTTRNEKVV-RMM--ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG-LPLAAKTIG 389 (938)
Q Consensus 318 iivTtr~~~~~-~~~--~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~a 389 (938)
||.||...... ..+ .-...+.+...+.++..++|..++........ ......|++.+.| .+-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 77677654211 111 11347788888888888888887633221111 2334568888887 444444443
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.64 E-value=0.00062 Score=71.77 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=96.8
Q ss_pred CccccchHHHHHHHHHhhcccC-------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG-------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.+++|.+..++++.+.+...-. .+-...+.+.|+|++|+|||+||+.+++.. .. ..+.++ ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~---~~i~v~------~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA---NFISIK------GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---EEEEEC------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CC---CEEEEE------hH
Confidence 4689999998888887642100 001234578999999999999999999852 21 222332 12
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCC---------C-cCC----chhhhhhhcc--CCCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTD---------D-YSK----WEPFHNCLMH--GLRG 315 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~-~~~----~~~l~~~l~~--~~~g 315 (938)
.+ .....+.. ....... +.......+.++++|++..- + ... ...+...+.. ...+
T Consensus 84 ~l----~~~~~g~~--~~~~~~~---f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 EL----LTMWFGES--EANVREI---FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HH----HHHHHTTC--TTHHHHH---HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HH----HhhhcCch--HHHHHHH---HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 22 22222211 1112222 22222356789999999420 0 001 1223333322 1235
Q ss_pred CEEEEEcCChHHH-Hh-cc---cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchh
Q 035647 316 SKILVTTRNEKVV-RM-ME---STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPL 383 (938)
Q Consensus 316 s~iivTtr~~~~~-~~-~~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 383 (938)
..||.||...... .. .. -...+.+...+.++-.+++......... ....... .+++.+.|.|-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCHH----HHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchHH----HHHHHcCCCCH
Confidence 5677777755322 11 11 1347889999999999988777633221 1122222 35556666553
No 205
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.59 E-value=0.0002 Score=76.08 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=73.8
Q ss_pred ccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKA 256 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 256 (938)
.++|.+..++.+...+..... ........+.++|.+|+|||++|+.+++. ....-...+.++++....... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~-- 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-V-- 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-H--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-H--
Confidence 578999999998888764310 01123468999999999999999999885 212222355666554332211 1
Q ss_pred HHHHhcCCCC--CcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEcC
Q 035647 257 IIEALEGSAP--NLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTTR 323 (938)
Q Consensus 257 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 323 (938)
...++.... ...........+. ....-+++||++..-.......+...+..+. ..+.+|.||.
T Consensus 93 -~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 93 -SRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp -HHHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred -HHhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 111221111 0000011112221 1334699999996544444455555443321 2344777777
Q ss_pred C
Q 035647 324 N 324 (938)
Q Consensus 324 ~ 324 (938)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 206
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.55 E-value=3.2e-05 Score=71.53 Aligned_cols=110 Identities=6% Similarity=0.041 Sum_probs=62.2
Q ss_pred ccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 035647 180 EVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIE 259 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 259 (938)
.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.+++... ....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh------
Confidence 578999999988888754221 123478999999999999999987522 2233322210 0000
Q ss_pred HhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccC-CCCCEEEEEcCC
Q 035647 260 ALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHG-LRGSKILVTTRN 324 (938)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 324 (938)
...+... .+.-.+++|++..-..+....+...+... ..+.++|.||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 22457899999654433334455444433 345688888764
No 207
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.51 E-value=0.00055 Score=72.63 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHhhcc--cC------CCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCE--FG------EEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~--~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|++..++.+...+... .. ........+.++|.+|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998877541 00 00112456889999999999999999885
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0025 Score=68.54 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=97.3
Q ss_pred CccccchHHHHHHHHHhhcc----c---CCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCE----F---GEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|-++.+++|.+.+.-+ . .-+-..++-|.++|++|.|||.||+++++. .... .+.++.+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~--- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELV--- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhh---
Confidence 46889999888887765321 0 001224567999999999999999999985 2222 3444443311
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCC-----cC---C------chhhhhhhcc--CCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDD-----YS---K------WEPFHNCLMH--GLR 314 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-----~~---~------~~~l~~~l~~--~~~ 314 (938)
... ..+.+..+..+.... ...+++|+||+++.-- .. . ...+...+.. ...
T Consensus 220 -----------sk~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 220 -----------QKY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -----------CSS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -----------ccc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 111 111122222222222 3578999999995310 00 0 1112222221 233
Q ss_pred CCEEEEEcCChHHH-----HhcccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 315 GSKILVTTRNEKVV-----RMMESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 315 gs~iivTtr~~~~~-----~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
+..||.||...+.. +.-.-+..+.++.-+.++-.++|+.+.-... ....-++. +|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvdl~----~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGINLR----KVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCCHH----HHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCCHH----HHHHHCCCCC
Confidence 44567777654322 1112256888988888888899987763322 12222333 3677776643
No 209
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=0.00011 Score=69.37 Aligned_cols=18 Identities=39% Similarity=0.357 Sum_probs=10.1
Q ss_pred cCCccceeeccCcccccc
Q 035647 839 AFPKLKKLTLRGLYEWEE 856 (938)
Q Consensus 839 ~l~~L~~L~l~~~~~l~~ 856 (938)
.+++|++|++++|+.+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 455555555555555554
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0013 Score=71.74 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=38.7
Q ss_pred CCccccchHHHHHHHHHhhccc-C------CCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 178 VSEVRGRDEEMNILKSKLLCEF-G------EEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~-~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.++.|-++.+++|.+.+.-.- . -+-...+-|.++|++|+|||+||+++++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999888887654210 0 01234567999999999999999999985
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.50 E-value=0.00069 Score=76.04 Aligned_cols=185 Identities=10% Similarity=0.038 Sum_probs=99.5
Q ss_pred CccccchHHHHHHHHHhhcccCC-------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE-------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.+++|.+..++++.+.+...-.. +....+-|.|+|.+|+|||++|+.+++. ... ..+.+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEchH-----
Confidence 46899999999998877532000 0123456899999999999999999875 221 233444221
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc-----------CCchhhhhhhcc--CCCCCEE
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY-----------SKWEPFHNCLMH--GLRGSKI 318 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~i 318 (938)
+. .... ..........+.....+++.+|+||++..-.. .....+...+.. ...+..|
T Consensus 274 -----l~----~~~~-g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IM----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HH----TSCT-THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hh----hhhc-chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 1111 11111122223333346678999999932100 011223333332 2234466
Q ss_pred EEEcCChHH-HHhc----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCc-hhHHHHH
Q 035647 319 LVTTRNEKV-VRMM----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGL-PLAAKTI 388 (938)
Q Consensus 319 ivTtr~~~~-~~~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 388 (938)
|.||..... ...+ .-...+.+...+.++-.+++..++..... .....+. ++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l~----~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLE----QVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCHH----HHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhHH----HHHHHccCCcHHHHHHH
Confidence 667765422 1111 11347889999999999999887633221 1222233 366666664 4344433
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.49 E-value=0.00048 Score=82.97 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=87.6
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc---cc-cCCCeEEE-EEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC---VI-NNFDKRMW-VCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~-~~f~~~~w-v~~~~~~~~~~~ 253 (938)
..++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++... +. ......+| ++.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999998543 334568999999999999999987521 00 01222232 221110
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCCCCCc-----CCchhhhhhhcc--CCCCCEEEEEcCCh
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVWTDDY-----SKWEPFHNCLMH--GLRGSKILVTTRNE 325 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~iivTtr~~ 325 (938)
+.. .......+.....+.+.+. .++.+|++|++..-.. ..-......+.. ...+.++|.+|...
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 111 1122233434444444443 4578999999953200 001111122221 12345677777654
Q ss_pred HHHHhc-------ccCCeEecCCCChHHHHHHHHHhh
Q 035647 326 KVVRMM-------ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 326 ~~~~~~-------~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
...... .....+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 112368899999999998887643
No 213
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.48 E-value=0.00019 Score=74.32 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=40.4
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN 247 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 247 (938)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++... ..-...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCC
Confidence 4588999999988877653221 224578999999999999999997521 11123455665543
No 214
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.43 E-value=9.5e-05 Score=68.62 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=50.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGK 285 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 285 (938)
...++|+|..|+|||||++.++...... .+ .++++....-... . +..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~-~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------D-AAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------G-GGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------H-HHhC
Confidence 3479999999999999999999853221 11 2566655432211 1 1235
Q ss_pred eeeEEeCCCCCCCcCCchhhhhhhcc-CCCCC-EEEEEcCC
Q 035647 286 RFFLVLDDVWTDDYSKWEPFHNCLMH-GLRGS-KILVTTRN 324 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~iivTtr~ 324 (938)
.-++|+||+.......-+.+...+.. ...|. .||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 67899999954322222223333322 11233 48888884
No 215
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.40 E-value=0.00023 Score=74.99 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=36.9
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3589999999998888754321 2335789999999999999999874
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0032 Score=68.78 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=97.6
Q ss_pred CCccccchHHHHHHHHHhhccc-C------CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEF-G------EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDE 250 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~-~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 250 (938)
-.++.|-++.+++|.+.+.-.- . .+-..++-|.++|++|+|||+||+++++. .... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhcc-
Confidence 3568899988888877653210 0 01234678999999999999999999986 2222 33444433111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCC------CcCCc--------hhhhhhhcc--CC
Q 035647 251 FRIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTD------DYSKW--------EPFHNCLMH--GL 313 (938)
Q Consensus 251 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~------~~~~~--------~~l~~~l~~--~~ 313 (938)
.. .......+..+.... ...+++|++|+++.- ..... ..+...+.. ..
T Consensus 254 -------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 11 111122222222222 367999999999531 00001 112222221 23
Q ss_pred CCCEEEEEcCChHHHHh-c-c---cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 314 RGSKILVTTRNEKVVRM-M-E---STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 314 ~gs~iivTtr~~~~~~~-~-~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
.+..||.||........ + . -+..+.++.-+.++-.++|+.+...-.. ...-++. .|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl~----~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDFE----AAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCHH----HHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCHH----HHHHhCCCCC
Confidence 45577888876543221 1 1 1447788877888888888776643221 1222333 3677776643
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=0.0022 Score=65.80 Aligned_cols=184 Identities=12% Similarity=0.011 Sum_probs=91.2
Q ss_pred CCccccchHHHHHHHHHhh---cccCC---CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 178 VSEVRGRDEEMNILKSKLL---CEFGE---EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
-.+++|.+..++++.+.+. ....- +....+-+.|+|++|+||||+|+.+++.. ... .+.++...-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH--
Confidence 3578999888877766532 11100 00123458899999999999999999752 222 23443322110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcC--------------Cchhhhhhhcc--CCCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYS--------------KWEPFHNCLMH--GLRG 315 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~g 315 (938)
.... .........+.......+.++++|++..-... ....+...+.. ...+
T Consensus 84 ------------~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 ------------MFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp ------------SCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred ------------Hhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 0000 11111222222222345789999998321000 01112222211 1234
Q ss_pred CEEEEEcCChH-HHHhc-c---cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCC-chhHHH
Q 035647 316 SKILVTTRNEK-VVRMM-E---STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKG-LPLAAK 386 (938)
Q Consensus 316 s~iivTtr~~~-~~~~~-~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~ 386 (938)
..||.||.... +...+ . -...+.+...+.++-.+++..+..... ...... ...++..+.| .+--+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 56777776543 21111 1 134677888888888888877653211 111111 2336666777 554443
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.33 E-value=0.0011 Score=70.96 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=93.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
..++|.+..++.+...+..... .......+.++|++|+||||||+.++... ...|. ..+ +...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~---~~s-g~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH---VTS-GPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE---EEE-TTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE---EEe-chHh----------
Confidence 4688998888887766643210 01234679999999999999999999852 11111 111 1110
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC------------------CCCEEE-
Q 035647 259 EALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL------------------RGSKIL- 319 (938)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii- 319 (938)
....+.. .+...+ .++.++++|++..-.....+.+...+.... ....++
T Consensus 88 ----------~~~~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 88 ----------VKQGDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ----------CSHHHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ----------cCHHHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 0011111 111112 234567778874322212222322221110 011222
Q ss_pred EEcCChHHHHhccc--CCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCchhHHHHHH
Q 035647 320 VTTRNEKVVRMMES--TDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKTIG 389 (938)
Q Consensus 320 vTtr~~~~~~~~~~--~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~a 389 (938)
.|++...+...+.. ...+.+++.+.++-.+++.+.+...... ...+.+..|++.++|.|-.+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHHH
Confidence 34443322222211 2358899999999999998876322211 123557789999999997554433
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.00033 Score=84.20 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=89.7
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc---
Confidence 4689999999998888764321 01123457999999999999999999885 212223455666554321100
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccC-----------CCCCEEEEEcCC
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHG-----------LRGSKILVTTRN 324 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 324 (938)
.. .......++. ....+|+||++..-..+....+...+..+ ....+||+||..
T Consensus 566 -----------~~--~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 -----------TS--GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp -----------CC-----CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred -----------cc--cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00 1111112221 23459999999655444455555555442 135688888873
Q ss_pred h-----HH----HHhc-----cc-CCeEecCCCChHHHHHHHHHhh
Q 035647 325 E-----KV----VRMM-----ES-TDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 325 ~-----~~----~~~~-----~~-~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
. .+ ...+ .. ...+.+.+++.++-.+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 11 1111 11 2488889999988888776543
No 220
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.27 E-value=0.00054 Score=76.83 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=35.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|.++.++.+...+..-.. +....+-+.++|++|+|||++|+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKS-KKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHh-CCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 5799999988765554432111 1123356889999999999999999875
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.25 E-value=0.0017 Score=77.96 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=80.1
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccc---cccCC-C-eEEEEEeCCCCCHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSC---VINNF-D-KRMWVCVSDNFDEFRI 253 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~-~~~wv~~~~~~~~~~~ 253 (938)
..++||+.+++++...|... ...-+.++|.+|+|||++|+.+++... +.... . .++.++.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g-------- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc--------
Confidence 46999999999999999643 223478999999999999999987520 00011 1 12222220
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHHhc--
Q 035647 254 AKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVRMM-- 331 (938)
Q Consensus 254 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~~~-- 331 (938)
....+. -.......... ....++.+|++|.- .+..+.+...+. ....++|.||.........
T Consensus 246 -----~~~~G~--~e~~l~~~~~~---~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 246 -----TKYRGE--FEDRLKKVMDE---IRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CTTHHHHHHH---HHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHHHHHH---HHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000 01122222222 22357889999922 122222333332 2245777777654421111
Q ss_pred -----ccCCeEecCCCChHHHHHHHHHhh
Q 035647 332 -----ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 332 -----~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
.....+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112478999999999999998654
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0053 Score=66.91 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHhhc----ccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLC----EFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|-++.+++|.+.+.- ..- -+-...+-|.++|++|+|||+||+++++. .... .+.++.+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L---- 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSEL---- 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGG----
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHh----
Confidence 4688999988888776431 100 01235678999999999999999999985 2222 344443321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh-hcCceeeEEeCCCCCCC------cCCc--------hhhhhhhcc--CCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYAS-IVGKRFFLVLDDVWTDD------YSKW--------EPFHNCLMH--GLR 314 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~------~~~~--------~~l~~~l~~--~~~ 314 (938)
.... ....+..+..+... -...+++|++|++..-- .... ..+...+.. ...
T Consensus 280 ----------~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 280 ----------VQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ----------CCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ----------hccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1111 11112222222222 23678999999994310 0000 011111211 123
Q ss_pred CCEEEEEcCChHHHH-hc----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCc
Q 035647 315 GSKILVTTRNEKVVR-MM----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGL 381 (938)
Q Consensus 315 gs~iivTtr~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (938)
+..||.||....... .+ .-+..+.++.-+.++-.++|+.+...-. ....-++. .|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl~----~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRWE----LISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCHH----HHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCHH----HHHHHCCCC
Confidence 445666776443211 11 1256788888888888889987763322 11222333 367777764
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0019 Score=70.54 Aligned_cols=177 Identities=17% Similarity=0.101 Sum_probs=94.5
Q ss_pred CccccchHHHHHHHHHhhcc----c---CCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCE----F---GEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|-++.+++|.+.+.-. . ..+-..++-|.++|++|+|||.||+++++. ... ..+.++.+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~---~f~~v~~s~l---- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNA---TFLKLAAPQL---- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTC---EEEEEEGGGG----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCC---CEEEEehhhh----
Confidence 46899999999888764321 0 001234678999999999999999999985 222 2344443321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCC------CCc-C---Cc----hhhhhhhcc--CCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWT------DDY-S---KW----EPFHNCLMH--GLR 314 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~------~~~-~---~~----~~l~~~l~~--~~~ 314 (938)
.... ....+..+..+.... ...+++|++|+++. ... . .. ..+...+.. ...
T Consensus 252 ----------~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 252 ----------VQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ----------CSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ----------hhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 1111 111122222222222 24689999999832 000 0 01 112222222 123
Q ss_pred CCEEEEEcCChHHHHh-c----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCc
Q 035647 315 GSKILVTTRNEKVVRM-M----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGL 381 (938)
Q Consensus 315 gs~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (938)
+..||.||........ + .-+..+.++.-+.++-.++|+.+.-.-.. ...-++. +|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl~----~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINWQ----ELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCHH----HHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCHH----HHHHhCCCC
Confidence 4466667776543221 1 11457888888888888888766532211 1122233 366677664
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.05 E-value=0.0085 Score=66.59 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=95.2
Q ss_pred CccccchHHHHHHHHHhhcccCC------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.+++|.++.++++.+....-..+ +....+-|.|+|++|+|||+||+.++... ... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH--
Confidence 46899998877776654321100 01122348899999999999999999852 222 234443322110
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcC--------------Cchhhhhhhcc--CCCCC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYS--------------KWEPFHNCLMH--GLRGS 316 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~gs 316 (938)
.. ..........+.......+.+|++|++..-... ....+...+.. ...+.
T Consensus 89 ------------~~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 ------------FV-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ------------Hh-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00 001111222233333467899999999431110 11222222221 12355
Q ss_pred EEEEEcCChHHHH-hc-c---cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 317 KILVTTRNEKVVR-MM-E---STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 317 ~iivTtr~~~~~~-~~-~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
.||.||....... .+ . -...+.++..+.++-.++++.++..... .....+ ..|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhhH----HHHHHhcCCCc
Confidence 6777777654322 11 1 1337888888888888888776633211 111122 33777888876
No 225
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0064 Score=65.53 Aligned_cols=177 Identities=16% Similarity=0.110 Sum_probs=94.3
Q ss_pred CccccchHHHHHHHHHhhcc---cC----CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCE---FG----EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|-++.+++|.+.+.-. .. .+-...+-|.++|++|.|||.||+++++. .... .+.++.+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~---fi~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSAT---FLRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCE---EEEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCC---EEEEEHHHh----
Confidence 46889999888887765321 00 01234578999999999999999999986 2222 233433321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCC------cCC----ch----hhhhhhcc--CCC
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDD------YSK----WE----PFHNCLMH--GLR 314 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~------~~~----~~----~l~~~l~~--~~~ 314 (938)
... ...+.+..+..+.... ...+++|++|+++.-- ... .. .+...+.. ...
T Consensus 253 ----------~sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 253 ----------IQK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ----------CCS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ----------hhc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 111 1111222222222222 3568999999984310 000 01 12222211 223
Q ss_pred CCEEEEEcCChHHHHh-c-c---cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCc
Q 035647 315 GSKILVTTRNEKVVRM-M-E---STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGL 381 (938)
Q Consensus 315 gs~iivTtr~~~~~~~-~-~---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 381 (938)
+..||.||...+.... + . -+..+.++.-+.++-.++|+.+.-.-. ....-++.. |++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl~~----LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNLET----LVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCHHH----HHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCHHH----HHHhCCCC
Confidence 4466777775543321 1 1 134677877788888888877663222 122223333 66666654
No 226
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.95 E-value=0.00026 Score=73.46 Aligned_cols=158 Identities=12% Similarity=0.066 Sum_probs=80.5
Q ss_pred CCccccchHHHHHHHHHhhcccCC------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGE------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
-.+++|.+..++.+.+.+..-..+ +....+-+.|+|++|+|||++|+.+++.. ...|- .+..+.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--HVPFF---SMGGSSFIE-- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH--TCCCC---CCCSCTTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCEE---EechHHHHH--
Confidence 356899988877777765311000 00112347899999999999999999852 22221 111111100
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCc---------------CCchhhhhhhccC---C
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDY---------------SKWEPFHNCLMHG---L 313 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~ 313 (938)
...... ......... .....++.+|++|++..-.. .....+...+... .
T Consensus 83 --------~~~~~~--~~~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 --------MFVGLG--ASRVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------SCSSSC--SSSSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hhcchH--HHHHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 000000 011111111 11224578999999943111 1122233333221 1
Q ss_pred CCCEEEEEcCChHHHH-hc-c---cCCeEecCCCChHHHHHHHHHhh
Q 035647 314 RGSKILVTTRNEKVVR-MM-E---STDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 314 ~gs~iivTtr~~~~~~-~~-~---~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
....||.||....... .. . -...+.+...+.++-.+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245777776543211 11 1 13467888888888888887765
No 227
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.0031 Score=68.97 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=34.9
Q ss_pred CceEEEEEEcCCCCCC-cccccCCCCceEEEEecCCCcchhhhhhhhhccCcccccC----CCCcchhccCCCcccEEee
Q 035647 542 EELRHSILFLGYNASL-PVCIYNAKKLRSLLIYSSLYDLSAVLRYFFDQLTCLRALR----TEELPETCCELCNLQTIEI 616 (938)
Q Consensus 542 ~~lr~l~l~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~~~~l~~~~~~l~~Lr~L~----i~~lp~~i~~L~~L~~L~L 616 (938)
.+++.+.+..+ +..+ ..++.+|.+|+.+.+..+ ....-..+|.++ .|..+. +..++.......+|+.+.+
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~---v~~Ig~~aF~~c-~l~~i~~~~~l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST---VTSIGDGAFADT-KLQSYTGMERVKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT---CCEECTTTTTTC-CCCEEEECTTCCEECTTTTTTCCCSEEEC
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc---ceEechhhhcCC-CCceEECCceeeEeccceeccCCcccccC
Confidence 45666666443 2222 345677888888877542 112223344444 233332 3344433223345666666
Q ss_pred cC
Q 035647 617 EE 618 (938)
Q Consensus 617 ~~ 618 (938)
..
T Consensus 121 p~ 122 (379)
T 4h09_A 121 PG 122 (379)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 228
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.92 E-value=0.0042 Score=66.43 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=83.8
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
..++|++..++.+...+... +-+.++|.+|+|||+||+.+++. .... ...+.+.......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee
Confidence 46889999999998888643 25889999999999999999875 2222 23344433333322211000
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcCc---eeeEEeCCCCCCCcCCchhhhhhhccC-----------CCCCEEEEEcCC
Q 035647 259 EALEGSAPNLGELQSLLQHIYASIVGK---RFFLVLDDVWTDDYSKWEPFHNCLMHG-----------LRGSKILVTTRN 324 (938)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 324 (938)
.. ...... .+..+ ..++++|++..-.......+...+..+ .....|+.|+..
T Consensus 94 --~~-~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 --YN-QHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp --EE-TTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred --ec-CCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 00 000000 01111 258999999654433333344433321 223455556552
Q ss_pred hH------HHHhc-cc-CCeEecCCCChHHHHHHHHHhhc
Q 035647 325 EK------VVRMM-ES-TDVISIKELSEQECWWLFKRFAF 356 (938)
Q Consensus 325 ~~------~~~~~-~~-~~~~~l~~L~~~ea~~lf~~~~~ 356 (938)
.. +...+ .. ...+.+.+.+.++-.+++.+.+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 11111 11 22588999999999999988764
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.92 E-value=0.00065 Score=71.58 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEe
Q 035647 185 DEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCV 244 (938)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 244 (938)
...++.+.+++..... .....+.|+|.+|+|||+||..+++.... ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344455555543211 12467899999999999999999985220 22234555654
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.91 E-value=0.0046 Score=70.70 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=79.2
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
.+++|-+...+.+.+.+.-..-........+.++|++|+||||||+.++... ... ..-+.+....+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~---~~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRK---FVRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCE---EEEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCC---eEEEEecccchhhhhhhHHH
Confidence 4588888887777665432110011245689999999999999999998752 222 22233333222211111111
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcC----CchhhhhhhccCC---------------CCCEEE
Q 035647 259 EALEGSAPNLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYS----KWEPFHNCLMHGL---------------RGSKIL 319 (938)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ii 319 (938)
..++.. . ......+... ....-++++|++..-... ....+...+.... ....+|
T Consensus 156 ~~ig~~---~---~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGAM---P---GRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhccC---c---hHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111100 0 0111112222 223338889999542221 1233443332111 234677
Q ss_pred EEcCChH-----HHHhcccCCeEecCCCChHHHHHHHHHhh
Q 035647 320 VTTRNEK-----VVRMMESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 320 vTtr~~~-----~~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
.||.... .... ...+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 7766432 2222 2478999999999888887654
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.89 E-value=0.011 Score=61.72 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999986
No 232
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.85 E-value=0.00019 Score=69.54 Aligned_cols=43 Identities=5% Similarity=0.087 Sum_probs=29.3
Q ss_pred hhccCCCcccEEeecCC-CCCcc-----cchhhhcccCCCeEEeCCcccc
Q 035647 603 ETCCELCNLQTIEIEEC-SNLRR-----LPQRIGKLVNLRHLIFVDVYLD 646 (938)
Q Consensus 603 ~~i~~L~~L~~L~L~~~-~~l~~-----lp~~i~~L~~L~~L~l~~~~l~ 646 (938)
..+...+.|++|+|++| . ++. +...+...++|++|++++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34566778888888888 5 543 4444566778888888887643
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.82 E-value=0.0019 Score=77.70 Aligned_cols=135 Identities=14% Similarity=0.202 Sum_probs=73.1
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|.+..++.+...+..... +.+.....+.++|++|+|||++|+.+++.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 3588999999988887753221 012234579999999999999999998852 1 3345555544322100
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhc-CceeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEcC
Q 035647 256 AIIEALEGSAPNLGELQSLLQHIYASIV-GKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTTR 323 (938)
Q Consensus 256 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 323 (938)
+.+.++ ..+.....+ ....+...++ ....+|+||++..-..+..+.+...+..+. ....||.||.
T Consensus 530 -~~~l~g-~~~g~~g~~-~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 -VSRLIG-APPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp -CSSSCC-CCSCSHHHH-HTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred -HhhhcC-CCCCCcCcc-ccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 000011 111111101 1111222222 346799999996554444555555544321 2345777876
Q ss_pred C
Q 035647 324 N 324 (938)
Q Consensus 324 ~ 324 (938)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.80 E-value=0.00063 Score=70.46 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=45.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCV--SDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI 282 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 282 (938)
..+++.|+|++|+|||+||.+++.. .-..++|+++ .+..+. ...+.+.....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHH
Confidence 3457889999999999999999874 1123566766 222111 0134455566666666
Q ss_pred cCceeeEEeCCCC
Q 035647 283 VGKRFFLVLDDVW 295 (938)
Q Consensus 283 ~~~~~LlVlDdv~ 295 (938)
...+ ++|+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 6556 99999993
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.70 E-value=0.0032 Score=76.52 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=71.9
Q ss_pred CccccchHHHHHHHHHhhcccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAK 255 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 255 (938)
..++|.+..++.+...+..... +.+.....+.|+|.+|+|||++|+.+++.. ...-...+.++++....... ..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~~-~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKHA-VS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSGG-GG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchhH-HH
Confidence 3589999999998888754321 011234689999999999999999998752 11112344555544322110 00
Q ss_pred HHHHHhcCCCC--CcccHHHHHHHHHHhhcCceeeEEeCCCCCCCcCCchhhhhhhccCC-----------CCCEEEEEc
Q 035647 256 AIIEALEGSAP--NLGELQSLLQHIYASIVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGL-----------RGSKILVTT 322 (938)
Q Consensus 256 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 322 (938)
.+ ++.... ...........++. ...-+|+||++..-..+..+.+...+..+. .+..||+||
T Consensus 635 ~l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 635 RL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GC-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HH---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 00 110000 00000112222222 234589999996544444455555554331 244588888
Q ss_pred CC
Q 035647 323 RN 324 (938)
Q Consensus 323 r~ 324 (938)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 75
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.69 E-value=0.0095 Score=70.26 Aligned_cols=178 Identities=11% Similarity=0.061 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHhh----cccC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLL----CEFG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.++.|-++.+++|.+.+. ...- -+-..++-|.++|++|+|||+||+.+++. ...+ .+.|+..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH-----
Confidence 457888887777776543 1110 01234678999999999999999999986 2222 34444321
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHH-HHHHHhhcCceeeEEeCCCCCC------CcCCc-h----hhhhhhcc--CCCCCE
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLL-QHIYASIVGKRFFLVLDDVWTD------DYSKW-E----PFHNCLMH--GLRGSK 317 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~------~~~~~-~----~l~~~l~~--~~~gs~ 317 (938)
+.... ..+.+... .......+..+.+|+||+++.- ..... . .+...+.. ...+..
T Consensus 274 ---------l~sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ---------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------HHSSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ---------hhccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11111 11112222 2223333467899999999431 01111 1 12222211 122445
Q ss_pred EEEEcCChHHH-Hhcc----cCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 318 ILVTTRNEKVV-RMME----STDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 318 iivTtr~~~~~-~~~~----~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
||.||...+.. ..+. -...++++.-+.++-.++|+.+..... ....-++. +|++.+.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvdl~----~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDLE----QVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCCHH----HHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccCHH----HHHHhcCCCC
Confidence 66666654322 1111 144788888888888888887653221 12222333 4777777664
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.0058 Score=60.84 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=51.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC------------CCCCcccHHH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEG------------SAPNLGELQS 273 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~ 273 (938)
-.++.|+|.+|+||||||..++. ..-..++|++....++...+.. +.+.++. ......+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999999987 1224688888776555554433 3322211 1111222233
Q ss_pred HHHHHHHhhcCceeeEEeCCCC
Q 035647 274 LLQHIYASIVGKRFFLVLDDVW 295 (938)
Q Consensus 274 ~~~~l~~~l~~~~~LlVlDdv~ 295 (938)
....++..+..+.-++|+|.+.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4444444444457799999983
No 238
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.64 E-value=0.02 Score=62.78 Aligned_cols=302 Identities=12% Similarity=0.088 Sum_probs=159.2
Q ss_pred ceEEEEEEcCCCCC-CcccccCCCCceEEEEecCCCcchhhh-hhhhhccCcccccC----CCCcch-hccCCCcccEEe
Q 035647 543 ELRHSILFLGYNAS-LPVCIYNAKKLRSLLIYSSLYDLSAVL-RYFFDQLTCLRALR----TEELPE-TCCELCNLQTIE 615 (938)
Q Consensus 543 ~lr~l~l~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~~~~l-~~~~~~l~~Lr~L~----i~~lp~-~i~~L~~L~~L~ 615 (938)
.++.+.+..+ +.. -..++.+|.+|+.+.+..+.......+ ...|..+..|+.+. +..++. .+..+.+|+.+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhccccccc
Confidence 4677777654 332 345788999999999976532222333 45677888888775 455553 467889999999
Q ss_pred ecCCCCCcccch-hhhcccCCCeEEeCCccccccCccCCCCCCCCcCCceEecCCCCCCCCccCccccccccccCCeEEE
Q 035647 616 IEECSNLRRLPQ-RIGKLVNLRHLIFVDVYLDYMPKGIERLTCLRTLSEFVVSGRGKYGNKACNLEGMRDLNNLRGSLII 694 (938)
Q Consensus 616 L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~i 694 (938)
+..+ +..++. .+..+.+|+.+.+..+ +..+........+|+.+.+..... . -....+..+..+... ..
T Consensus 144 lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~---i~~~af~~c~~l~~~----~~ 212 (394)
T 4gt6_A 144 IPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-R---IGTNAFSECFALSTI----TS 212 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-E---ECTTTTTTCTTCCEE----EE
T ss_pred ccce--eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-c---cccchhhhcccccee----cc
Confidence 8653 444443 4778889999988654 445544322234455443211000 0 001112222222110 00
Q ss_pred cCCCCCCChhhhh----------hccCccccccCceEEEecCCCCCCccccccccccccHHHH-hhhcCCCCCcceEEEe
Q 035647 695 RGLGNVTSIDEAK----------TTNLDKKKNLVHLELRFNKEKDDGAGEAMNLENEVNHEAI-SEALQAPPNIESLEMC 763 (938)
Q Consensus 695 ~~~~~~~~~~~~~----------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~L~ 763 (938)
.. .......... .........+..+.+. .....+ ...+..+.+|+.+.+.
T Consensus 213 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip------------------~~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 213 DS-ESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP------------------NGVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp CC-SSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC------------------TTEEEECTTTTTTCSSCCEEECC
T ss_pred cc-cccccccceeecccccccccccccccccccceEEcC------------------CcceEcccceeeecccccEEecc
Confidence 00 0000000000 0000001111111110 000000 1346677888888875
Q ss_pred ecCCCCCCC-chhhhccCccEEEEeCCCCCCCCC--CCCCCCCccceeeccccCceEeCcccccCCCCCCCCCCcccccC
Q 035647 764 YYKGKTALP-SWVVLLNKLKKLYLTHCNNCEIMP--SLGKLPSLEILQIIGMRSVKRVGDEFWGIENHHSSSSSSSIVAF 840 (938)
Q Consensus 764 ~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 840 (938)
.+.. . +. ..+..+++|+.+.+... ...++ .+.++.+|+.+.|.. +++.++... +.+|
T Consensus 274 ~~~~-~-I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a--------------F~~C 333 (394)
T 4gt6_A 274 DSVV-S-IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDA--------------FAGC 333 (394)
T ss_dssp TTCC-E-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT--------------TTTC
T ss_pred cccc-e-ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhH--------------hhCC
Confidence 5432 2 33 33557889999998643 23333 577889999999864 366665432 4578
Q ss_pred CccceeeccCccccccccccccccccCCcccEEeecCCccccCCCcCCCCCCCccEEEEcCC
Q 035647 841 PKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLPVDLLRSQKLKMLEIYNC 902 (938)
Q Consensus 841 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 902 (938)
.+|+.+.|..+ +..+. ...|..+++|+.+++.++... . ..+..+.+|+.+.+..+
T Consensus 334 ~~L~~i~ip~s--v~~I~--~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 334 EQLERIAIPSS--VTKIP--ESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCCEEEECTT--CCBCC--GGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC--------
T ss_pred CCCCEEEECcc--cCEEh--HhHhhCCCCCCEEEECCceee--h-hhhhccCCCCEEEeCCC
Confidence 89999999653 45443 344778999999999876422 1 24555677777776543
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.43 E-value=0.036 Score=61.96 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=91.3
Q ss_pred CCccccchHHHHHHHHHhhcccCC------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGE------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
-.+++|.++.+.++.+....-... +-.-.+-+.|+|++|+||||||+.++.... ...+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH--
Confidence 457899988777666554321100 001122389999999999999999998522 2334454432110
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc----CceeeEEeCCCCCCCc----------CCc----hhhhhhhccC-
Q 035647 252 RIAKAIIEALEGSAPNLGELQSLLQHIYASIV----GKRFFLVLDDVWTDDY----------SKW----EPFHNCLMHG- 312 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~~~----------~~~----~~l~~~l~~~- 312 (938)
.. .. .....+...++ ..+.++++|++..-.. +.+ ..+...+..+
T Consensus 103 ------------~~--~g---~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------MF--VG---VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------SC--TT---HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------hh--hh---hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 00 11122333332 2357999999943110 001 1222222222
Q ss_pred -CCCCEEEEEcCChHHHHh-c----ccCCeEecCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHhhcCCch
Q 035647 313 -LRGSKILVTTRNEKVVRM-M----ESTDVISIKELSEQECWWLFKRFAFFGRPPSECEQLVEIGQKIVGNCKGLP 382 (938)
Q Consensus 313 -~~gs~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 382 (938)
..+..|+.||..+..... + .-...+.+...+.++-.++++.++-.. .......+ ..|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~l----~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVDL----ALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSSTT----HHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHHH----HHHHHhcCCCC
Confidence 233456666666544221 1 123478888888888888887765321 11111122 33777777765
No 240
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.35 E-value=0.0022 Score=63.43 Aligned_cols=113 Identities=16% Similarity=0.028 Sum_probs=62.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHhh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN--LGELQSLLQHIYASI 282 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 282 (938)
.-.++.|+|..|+||||++..++.. ...+-..++.+..... .. ....+++.++..... .....+..+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4578999999999999999888875 3223223444433322 11 122344444432221 122334455555544
Q ss_pred cCc-eeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 283 VGK-RFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 283 ~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
.+. .-+||+|.+..-+.+..+.+ ..+.+ .|..||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 444 44999999954332333333 22333 278899999853
No 241
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.30 E-value=0.0012 Score=63.76 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=51.3
Q ss_pred CceEEEEEEcC-CCCC-----CcccccCCCCceEEEEecCCCcch--hhhhhhhhccCcccccCCCCcchhccCCCcccE
Q 035647 542 EELRHSILFLG-YNAS-----LPVCIYNAKKLRSLLIYSSLYDLS--AVLRYFFDQLTCLRALRTEELPETCCELCNLQT 613 (938)
Q Consensus 542 ~~lr~l~l~~~-~~~~-----~~~~~~~l~~Lr~L~l~~~~~~~~--~~l~~~~~~l~~Lr~L~i~~lp~~i~~L~~L~~ 613 (938)
..++++++.++ .+.. +...+...++|++|+|++|..... ..+... +...++|++
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~------------------L~~n~~L~~ 97 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM------------------LKVNNTLKS 97 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH------------------HHHCSSCCE
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH------------------HHhCCCcCE
Confidence 45666666665 5443 233445566666676666532111 112222 333445566
Q ss_pred EeecCCCCCcc-----cchhhhcccCCCeEEe--CCccccc-----cCccCCCCCCCCcCCceEe
Q 035647 614 IEIEECSNLRR-----LPQRIGKLVNLRHLIF--VDVYLDY-----MPKGIERLTCLRTLSEFVV 666 (938)
Q Consensus 614 L~L~~~~~l~~-----lp~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~~~~~ 666 (938)
|+|++|. ++. +...+...++|++|++ ++|.+.. +...+...++|++|++..+
T Consensus 98 L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 98 LNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp EECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred EECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 6666655 433 3334455556666666 4454332 2223344455555555443
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.27 E-value=0.017 Score=62.98 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHHhhc----ccC--------------------CCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 180 EVRGRDEEMNILKSKLLC----EFG--------------------EEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~----~~~--------------------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|.+..++.+...+.. ... ........+.++|++|+|||++|+.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 478988888888777620 000 00112346899999999999999999985
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.26 E-value=0.029 Score=57.81 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=66.9
Q ss_pred EEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCcee
Q 035647 209 ISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRF 287 (938)
Q Consensus 209 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~ 287 (938)
+.++|++|+||||||+.++..... ..+++....-.+. ........+..+.+.. ...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999985221 3445543321110 0001111122222221 24578
Q ss_pred eEEeCCCCCCC-------cCCc----hhhhhhhccC--CCCCEEEEEcCChHHHHhc-----ccCCeEecCCCChHHHHH
Q 035647 288 FLVLDDVWTDD-------YSKW----EPFHNCLMHG--LRGSKILVTTRNEKVVRMM-----ESTDVISIKELSEQECWW 349 (938)
Q Consensus 288 LlVlDdv~~~~-------~~~~----~~l~~~l~~~--~~gs~iivTtr~~~~~~~~-----~~~~~~~l~~L~~~ea~~ 349 (938)
++++|++..-. .... ..+...+..+ ....-++.+|..+.+.... .-...+.++..+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 99999994310 0011 1122222222 1234455666655433211 124577888888888888
Q ss_pred HHHHhh
Q 035647 350 LFKRFA 355 (938)
Q Consensus 350 lf~~~~ 355 (938)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888765
No 244
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.16 E-value=0.0021 Score=65.51 Aligned_cols=60 Identities=25% Similarity=0.177 Sum_probs=38.7
Q ss_pred CCCCcceEEEeecCCCC--CCCchhhhccCccEEEEeCCCCCCCCCCCCCCC--Cccceeecccc
Q 035647 753 APPNIESLEMCYYKGKT--ALPSWVVLLNKLKKLYLTHCNNCEIMPSLGKLP--SLEILQIIGMR 813 (938)
Q Consensus 753 ~~~~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~--~L~~L~L~~~~ 813 (938)
.+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|...+. ..+..+. +|++|+|.+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence 46788888888888877 3446667888888888888864332 2222222 55555555544
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.12 E-value=0.013 Score=62.25 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=55.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
.-.++.|+|.+|+||||||.+++.... ..=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999987522 222357888877766543 4555554321 2234555555555
Q ss_pred Hhhc-CceeeEEeCCC
Q 035647 280 ASIV-GKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv 294 (938)
..++ .+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 5444 45669999998
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.015 Score=58.90 Aligned_cols=89 Identities=22% Similarity=0.192 Sum_probs=52.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------CCcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVIN----NFDKRMWVCVSDNFDEFRIAKAIIEALEGSA------------PNLG 269 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 269 (938)
-.++.|+|.+|+|||||+..++....... .-..++|++....+....+. ++++.++... ....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45899999999999999999887421111 13578899877755544432 3444443221 0111
Q ss_pred cHHHHHHHHHHhhc-CceeeEEeCCCC
Q 035647 270 ELQSLLQHIYASIV-GKRFFLVLDDVW 295 (938)
Q Consensus 270 ~~~~~~~~l~~~l~-~~~~LlVlDdv~ 295 (938)
........+.+.+. .+.-++|+|++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 11222333444443 467799999983
No 247
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.07 E-value=0.075 Score=57.75 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=72.0
Q ss_pred cCCCCCcceEEEeecCCCCCCC-chhhhccCccEEEEeCCCCCCCCCCCCCCCCccceeeccccCceEeCcccccCCCCC
Q 035647 751 LQAPPNIESLEMCYYKGKTALP-SWVVLLNKLKKLYLTHCNNCEIMPSLGKLPSLEILQIIGMRSVKRVGDEFWGIENHH 829 (938)
Q Consensus 751 l~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 829 (938)
+..+.+|+.+.+..+- .. ++ ..+..+.+|+.+.+..+-..-.-..+..+.+|+.+.+.. +++.++..
T Consensus 213 f~~~~~l~~i~~~~~~-~~-i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-------- 280 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-TT-LGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-------- 280 (379)
T ss_dssp TTTCSSCSEEECCTTC-CE-ECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTT--------
T ss_pred cccccccceeeeccce-eE-EccccccCCccceEEEcCCCccEeCccccceeehhccccccc--cceecccc--------
Confidence 3344556665554331 11 22 233456677777775542111112455666677766643 24444432
Q ss_pred CCCCCcccccCCccceeeccCccccccccccccccccCCcccEEeecCCccccCCC-cCCCCCCCccEEEEcC
Q 035647 830 SSSSSSSIVAFPKLKKLTLRGLYEWEEWEIEKEDIAVMPQLISLELGSCSKLKSLP-VDLLRSQKLKMLEIYN 901 (938)
Q Consensus 830 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 901 (938)
.+.++++|+.+.+.++ .++.+. ...+..+.+|+.+.|..+ ++.++ ..+.+|++|+.+.+-.
T Consensus 281 ------aF~~c~~L~~i~l~~~-~i~~I~--~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 ------LCSGCSNLTKVVMDNS-AIETLE--PRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ------TTTTCTTCCEEEECCT-TCCEEC--TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred ------cccccccccccccccc-ccceeh--hhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 2457788888888653 234443 334667888888888543 66665 4577788888887754
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.04 E-value=0.024 Score=60.60 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=54.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccccccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------CCc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVIN----NFDKRMWVCVSDNFDEFRIAKAIIEALEGSA------------PNL 268 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 268 (938)
.-.++.|+|.+|+||||||..++....... .-..++|++....++.+.+. ++++.++... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 567999999999999999999887522211 22478899988877666554 3344444321 111
Q ss_pred ccHHHHHHHHHHhhc---CceeeEEeCCC
Q 035647 269 GELQSLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 269 ~~~~~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
....+....+.+.++ .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 122233333444443 34568888887
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.03 E-value=0.012 Score=59.10 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=61.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-------------------
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP------------------- 266 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 266 (938)
-.+++|+|.+|+|||||++.++.... ..=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35899999999999999999986422 1113466766543 3444433332 3321110
Q ss_pred ----CcccHHHHHHHHHHhhc-Ccee--eEEeCCCCCC---CcCCchhhhhhhcc--CCCCCEEEEEcCCh
Q 035647 267 ----NLGELQSLLQHIYASIV-GKRF--FLVLDDVWTD---DYSKWEPFHNCLMH--GLRGSKILVTTRNE 325 (938)
Q Consensus 267 ----~~~~~~~~~~~l~~~l~-~~~~--LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 325 (938)
...+..+....+...+. .++- ++|+|.+..- +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134444444444433 2333 9999998421 22222333333332 12477888888865
No 250
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.03 E-value=0.0039 Score=63.54 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=33.1
Q ss_pred hhccCCCcccEEeecCCCCCcccchhhhccc--CCCeEEeCCcccc-ccCc-------cCCCCCCCCcCCc
Q 035647 603 ETCCELCNLQTIEIEECSNLRRLPQRIGKLV--NLRHLIFVDVYLD-YMPK-------GIERLTCLRTLSE 663 (938)
Q Consensus 603 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~l~-~lp~-------~i~~L~~L~~L~~ 663 (938)
..+..+++|+.|+|++|. +..+. .+..+. +|++|++++|.+. .+|. .+..+++|+.|+.
T Consensus 190 ~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp THHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 444556666666776666 55542 244444 6677777776643 2331 2456666666653
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.02 E-value=0.02 Score=60.70 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=54.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcccH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINN----FDKRMWVCVSDNFDEFRIAKAIIEALEGSAP---------NLGEL 271 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 271 (938)
...++.|+|.+|+||||||.+++........ -..++|++....++.+.+. ++++.++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3458999999999999999998865221110 2478999988877666554 34455543210 01112
Q ss_pred H---HHHHHHHHhhc--CceeeEEeCCC
Q 035647 272 Q---SLLQHIYASIV--GKRFFLVLDDV 294 (938)
Q Consensus 272 ~---~~~~~l~~~l~--~~~~LlVlDdv 294 (938)
+ +....+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23444444543 45678899988
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.01 E-value=0.0078 Score=57.56 Aligned_cols=116 Identities=18% Similarity=0.070 Sum_probs=63.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC-------CC-CCc-------ccH
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEG-------SA-PNL-------GEL 271 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~-~~~-------~~~ 271 (938)
..|.|++-.|.||||.|-..+-. .-++=-.+.++.+.... ...--..+++.+.. .. ... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 46777777889999999777654 22222234555443321 11111223333320 00 011 112
Q ss_pred HHHHHHHHHhhcCcee-eEEeCCCCC---CCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 272 QSLLQHIYASIVGKRF-FLVLDDVWT---DDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 272 ~~~~~~l~~~l~~~~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
.......++.+.+.+| |||||++-. -..-..+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2334455566655555 999999821 12334455666666666678999999975
No 253
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.99 E-value=0.016 Score=61.50 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=54.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccccccc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVIN---------NF-----DKRMWVCVSDNFDEFRIAKAIIEALEGSAP---- 266 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 266 (938)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++.+.+.. +++.++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999998886421111 11 4688999888776666553 3455543210
Q ss_pred -----CcccHH---HHHHHHHHhhcC--ceeeEEeCCC
Q 035647 267 -----NLGELQ---SLLQHIYASIVG--KRFFLVLDDV 294 (938)
Q Consensus 267 -----~~~~~~---~~~~~l~~~l~~--~~~LlVlDdv 294 (938)
...+.+ +....+.+.++. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 111222 234445555443 4558888888
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.91 E-value=0.02 Score=59.05 Aligned_cols=83 Identities=8% Similarity=0.089 Sum_probs=53.7
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHH-HHHHHHh
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSL-LQHIYAS 281 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 281 (938)
++-|.|.+|+||||||.+++........=..++||+....++.. .+++++.+.. ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999998887652211112468899988877653 3667765432 12344444 3332222
Q ss_pred --hc-CceeeEEeCCCC
Q 035647 282 --IV-GKRFFLVLDDVW 295 (938)
Q Consensus 282 --l~-~~~~LlVlDdv~ 295 (938)
++ ++.-++|+|-+.
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 23 567899999993
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.84 E-value=0.02 Score=61.41 Aligned_cols=84 Identities=19% Similarity=0.130 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
..+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++.+.. ...+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 345889999999999999998887522 222468999988766543 2444543211 1234555555565
Q ss_pred Hhhc-CceeeEEeCCCC
Q 035647 280 ASIV-GKRFFLVLDDVW 295 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv~ 295 (938)
...+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 345699999983
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.77 E-value=0.014 Score=69.97 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=83.6
Q ss_pred CccccchHHHHHHHHHhhcc----cC---CCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH
Q 035647 179 SEVRGRDEEMNILKSKLLCE----FG---EEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF 251 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 251 (938)
.+++|.+..++++.+++... .- -.-.....|.|+|.+|+||||||+.++.. .... .+.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~---~i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCE---EEEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCc---EEEEEchH-----
Confidence 46899999988888877431 00 00123457999999999999999999875 2222 23443211
Q ss_pred HHHHHHHHHhcCCCCCcccHHH-HHHHHHHhhcCceeeEEeCCCCCCCc------C-----CchhhhhhhccC--CCCCE
Q 035647 252 RIAKAIIEALEGSAPNLGELQS-LLQHIYASIVGKRFFLVLDDVWTDDY------S-----KWEPFHNCLMHG--LRGSK 317 (938)
Q Consensus 252 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs~ 317 (938)
+.... ...... ....+.......+.++++|++..-.. . ....+...+... ..+..
T Consensus 274 ---------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ---------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ---------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 11111 111111 12222222234678999999932110 0 011122222211 23446
Q ss_pred EEEEcCChHHH-Hhcc----cCCeEecCCCChHHHHHHHHHhh
Q 035647 318 ILVTTRNEKVV-RMME----STDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 318 iivTtr~~~~~-~~~~----~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
+|.||...... ..+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66666654221 1111 12457788888899889888765
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.66 E-value=0.098 Score=55.92 Aligned_cols=157 Identities=10% Similarity=-0.050 Sum_probs=97.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-Hhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~ 283 (938)
-.++..++|..|.||++.+..+.+... ...|+....+.+... .++.++.+.+. .-+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCc
Confidence 345899999999999999998877421 123432211222222 22233332222 2234
Q ss_pred CceeeEEeCCCCC-CCcCCchhhhhhhccCCCCCEEEEEcCC-------hHHHHhc-ccCCeEecCCCChHHHHHHHHHh
Q 035647 284 GKRFFLVLDDVWT-DDYSKWEPFHNCLMHGLRGSKILVTTRN-------EKVVRMM-ESTDVISIKELSEQECWWLFKRF 354 (938)
Q Consensus 284 ~~~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~ 354 (938)
+++-++|+|++.. -....++.+...+..-..++.+|+++.. ..+.+.+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999865 3445667777777655567777776643 2344443 33568999999999999888777
Q ss_pred hcCCCCCCCchhHHHHHHHHHhhcCCchhHHHH
Q 035647 355 AFFGRPPSECEQLVEIGQKIVGNCKGLPLAAKT 387 (938)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 387 (938)
+...+-.. ..+.+..|++.++|.+.++..
T Consensus 155 ~~~~g~~i----~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLEL----DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEE----CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCC----CHHHHHHHHHHhchHHHHHHH
Confidence 64332211 235566799999998887665
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.48 E-value=0.014 Score=57.06 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 183 GRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|++.++.+.+.+.... .....+|+|.|.+|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667778888776432 235679999999999999999998763
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.47 E-value=0.032 Score=59.57 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=53.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
.-+++.|+|.+|+||||||.+++.... ..=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 345899999999999999999886522 222468899887765543 2445543211 1224455555444
Q ss_pred Hhhc-CceeeEEeCCCC
Q 035647 280 ASIV-GKRFFLVLDDVW 295 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv~ 295 (938)
...+ .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 356799999983
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.39 E-value=0.08 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.-.+++|+|..|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.34 E-value=0.03 Score=59.78 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=52.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
..+++.|.|.+|+||||||.+++.... ..=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 345899999999999999999887522 222468899987766543 2444543211 1123444444444
Q ss_pred Hhhc-CceeeEEeCCC
Q 035647 280 ASIV-GKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv 294 (938)
...+ .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 3332 45569999998
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.27 E-value=0.0031 Score=60.69 Aligned_cols=108 Identities=12% Similarity=-0.044 Sum_probs=51.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHHhhcC
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP--NLGELQSLLQHIYASIVG 284 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~ 284 (938)
.++.|+|..|+||||++..++...... .. .++++..... .+.....+...++.... ...+. ..+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERP----EEMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TC-EEEEEEEC-------CCCEECC----CEECEEESSG----GGGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCH----HHHHHHhcC
Confidence 478899999999999997776542211 12 2333322211 00000001111111100 00111 122233334
Q ss_pred ceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 285 KRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 285 ~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
+.-+|++|.+..-+.+ |......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~~-~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS-LFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCTT-HHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCHH-HHHHHHHHHHC--CCCEEEEeecc
Confidence 5669999999654333 44433333333 77899988843
No 263
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.20 E-value=0.12 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.19 E-value=0.034 Score=57.84 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=44.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD-NFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..++++|+|.+|+||||++..++........ ..+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3569999999999999999998864221111 2345554432 1222222333333333221111222333333433 2
Q ss_pred CceeeEEeCCC
Q 035647 284 GKRFFLVLDDV 294 (938)
Q Consensus 284 ~~~~LlVlDdv 294 (938)
...=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34558889944
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.08 E-value=0.073 Score=56.02 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=38.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEAL 261 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 261 (938)
.-.++.|.|.+|+||||+|..++...-..+ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 346899999999999999999886522222 578888766 46777777776553
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.01 E-value=0.073 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.95 E-value=0.091 Score=56.96 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=51.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccccc----ccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcccH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCV----INNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP---------NLGEL 271 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 271 (938)
.-.++.|+|.+|+|||||+..++-.... ...-..++|++....+....+ ..+++.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 3459999999999999999977532111 112356889987776555443 335555543210 01111
Q ss_pred ---HHHHHHHHHhhc-CceeeEEeCCC
Q 035647 272 ---QSLLQHIYASIV-GKRFFLVLDDV 294 (938)
Q Consensus 272 ---~~~~~~l~~~l~-~~~~LlVlDdv 294 (938)
.+....+...+. .+.-++|+|.+
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecch
Confidence 122233333332 45778899987
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.92 E-value=0.058 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|..|+|||||.+.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.92 E-value=0.082 Score=56.45 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=51.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCC----CeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------CCc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNF----DKRMWVCVSDNFDEFRIAKAIIEALEGSA------------PNL 268 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 268 (938)
.-.++.|+|.+|+|||||+..++......... ..++|++....+....+ ..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56799999999999999999998752111111 24589987665433332 23444332210 011
Q ss_pred ccHHHHHHHHHHhhc------CceeeEEeCCC
Q 035647 269 GELQSLLQHIYASIV------GKRFFLVLDDV 294 (938)
Q Consensus 269 ~~~~~~~~~l~~~l~------~~~~LlVlDdv 294 (938)
....+....+...+. .+.-+||+|.+
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 112233444444443 46779999998
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.92 E-value=0.019 Score=56.44 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 187 EMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-+++|.+.+... .....+|+|+|..|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555555432 135679999999999999999998874
No 271
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.90 E-value=0.017 Score=64.72 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=36.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|++..++.+...+... .-|.++|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 35889999999988887643 25889999999999999999985
No 272
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.77 E-value=0.086 Score=52.56 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=31.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHccccc---cc-CCCeEEEEEeCCCCCH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCV---IN-NFDKRMWVCVSDNFDE 250 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~ 250 (938)
.-.+++|+|.+|+|||||++.++..... .. .-..++|+........
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4569999999999999999999763111 11 1345788876554433
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.74 E-value=0.028 Score=58.31 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 187 EMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444443322 2345689999999999999999999864
No 274
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.59 E-value=0.074 Score=56.04 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=38.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALE 262 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 262 (938)
-.++.|.|.+|+||||+|..++..... .=..++|++. +.+..++...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 458999999999999999998875222 2245677765 4567777777766543
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.50 E-value=0.017 Score=55.10 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999874
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.49 E-value=0.02 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999874
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.45 E-value=0.019 Score=54.85 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.45 E-value=0.032 Score=57.78 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.1
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988764
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.44 E-value=0.087 Score=55.12 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 181 VRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 181 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++|....+..+...+.... ......+|+|.|..|+||||+++.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555566666666655432 2346789999999999999999998763
No 280
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.44 E-value=0.031 Score=56.86 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 187 EMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 187 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+.+...+..... ......+|.|+|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33444444443322 2345689999999999999999999874
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.36 E-value=0.019 Score=54.60 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHH
Q 035647 208 IISMVGMGGIGKTTLAQFV 226 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v 226 (938)
+|+|.|++|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.29 E-value=0.02 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|++|+||||+|+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999874
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.27 E-value=0.14 Score=53.34 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=47.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCCC---CCcccHHH-HHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF--RIAKAIIEALEGSA---PNLGELQS-LLQHI 278 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 278 (938)
...++.|+|.+|+||||++..++.... ..-..+.++... .+... +-+...++..+... ....+... ....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 568999999999999999999987522 221234555443 22222 12233444443221 11112222 23345
Q ss_pred HHhhcCceeeEEeCCC
Q 035647 279 YASIVGKRFFLVLDDV 294 (938)
Q Consensus 279 ~~~l~~~~~LlVlDdv 294 (938)
...+....-++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4445555568888976
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.20 E-value=0.02 Score=55.86 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|.|+|++|+||||+|+.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 285
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.16 E-value=0.019 Score=60.73 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=51.1
Q ss_pred HHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccc-cCCCeEEEEEeCCCCCHHHHHHHHHHHhcC----C
Q 035647 190 ILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVI-NNFDKRMWVCVSDNFDEFRIAKAIIEALEG----S 264 (938)
Q Consensus 190 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~ 264 (938)
++++.+..- .+-+.++|+|.+|+|||||++.+.+..... ..+. ++++-+++.... ..++.+.+.. .
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~E---v~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEE---VTEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHH---HHHHHTTCSSEEEEE
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHH---HHHHHHHhCeEEEEe
Confidence 455555432 234589999999999999999988742111 2233 345666653321 2223333311 0
Q ss_pred CCCcccHHH-----HHHHHHHhh--cCceeeEEeCCC
Q 035647 265 APNLGELQS-----LLQHIYASI--VGKRFFLVLDDV 294 (938)
Q Consensus 265 ~~~~~~~~~-----~~~~l~~~l--~~~~~LlVlDdv 294 (938)
..+...... ..-.+.+++ +++..||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 111111111 111233333 389999999999
No 286
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.16 E-value=0.032 Score=60.32 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHhhcc----c-----CCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 180 EVRGRDEEMNILKSKLLCE----F-----GEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 180 ~~~Gr~~~~~~l~~~L~~~----~-----~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|.+..++.+...+... . .......+.|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999888877310 0 000113457899999999999999999985
No 287
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.13 E-value=0.061 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.1
Q ss_pred EEEEEecCCChHHHHHHHHHc
Q 035647 208 IISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~ 228 (938)
+..|.|.+|+|||++|.....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 678999999999999977643
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.08 E-value=0.027 Score=54.92 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|++|+||||+++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999875
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.04 E-value=0.029 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 290
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.02 E-value=0.18 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|..|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999753
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.91 E-value=0.024 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+.|.|+|++|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.91 E-value=0.024 Score=54.21 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++++|+|++|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999864
No 293
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.86 E-value=0.023 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|+|+|++|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 294
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.85 E-value=0.085 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999976
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.80 E-value=0.035 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|++|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998864
No 296
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.80 E-value=0.089 Score=57.61 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=48.4
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHH--hc------CCCCCcccHHH----
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD-EFRIAKAIIEA--LE------GSAPNLGELQS---- 273 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~--l~------~~~~~~~~~~~---- 273 (938)
+.++|+|.+|+|||||+..+....... .-+..+++.+++..+ ..+++.++.+. +. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 368999999999999999998762221 224456666665442 23344334321 00 01111111111
Q ss_pred HHHHHHHhh---cCceeeEEeCCC
Q 035647 274 LLQHIYASI---VGKRFFLVLDDV 294 (938)
Q Consensus 274 ~~~~l~~~l---~~~~~LlVlDdv 294 (938)
..-.+.+++ ++++.|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 111333443 478999999999
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.79 E-value=0.032 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.70 E-value=0.028 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|+|.|++|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 299
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.68 E-value=0.031 Score=60.07 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=33.6
Q ss_pred CCccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 3468999886666544443221 123899999999999999999875
No 300
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.67 E-value=0.046 Score=55.61 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=77.4
Q ss_pred CccccchHHHHHHHHHhhcccCC------CCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHH
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE------EQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFR 252 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 252 (938)
.+++|.+....++.+....-... +-.-.+-+.|+|.+|+||||||+.++.... ...+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------H
Confidence 46889887666665543211000 000112289999999999999999998522 223333321 1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhh-cCceeeEEeCCCCCCC----------cCC----chhhhhhhccCC--CC
Q 035647 253 IAKAIIEALEGSAPNLGELQSLLQHIYASI-VGKRFFLVLDDVWTDD----------YSK----WEPFHNCLMHGL--RG 315 (938)
Q Consensus 253 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~~--~g 315 (938)
+.... ..........+.+.. ...+.++++|++..-. ... ...+...+..+. ..
T Consensus 85 ----~~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 85 ----FVEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp ----HHHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred ----HHHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11100 001111122222222 2356899999993200 000 112222232222 22
Q ss_pred CEEEEEcCChHHHHh-c----ccCCeEecCCCChHHHHHHHHHhh
Q 035647 316 SKILVTTRNEKVVRM-M----ESTDVISIKELSEQECWWLFKRFA 355 (938)
Q Consensus 316 s~iivTtr~~~~~~~-~----~~~~~~~l~~L~~~ea~~lf~~~~ 355 (938)
..++.||..+..... . .-...+.++..+.++-.++++.++
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 244456665543221 1 123477888888888888887665
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.55 E-value=0.031 Score=54.53 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|++|+||||+++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999874
No 302
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.50 E-value=0.034 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.618 Sum_probs=20.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
...+++|+|..|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 356999999999999999997543
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.48 E-value=0.038 Score=53.55 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 304
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.46 E-value=0.038 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.6
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+.++|.|.|++|+||||.|+.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 305
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.45 E-value=0.47 Score=51.74 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888764
No 306
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.44 E-value=0.2 Score=56.63 Aligned_cols=54 Identities=11% Similarity=-0.031 Sum_probs=37.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEAL 261 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 261 (938)
.-.++.|.|.+|+||||||.+++...... +=..++|++... +.+++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34689999999999999999988752211 123577877654 5667777665443
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.43 E-value=0.041 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.42 E-value=0.036 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 309
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.39 E-value=0.043 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5679999999999999999999873
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.38 E-value=0.046 Score=53.60 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|.+|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999874
No 311
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.38 E-value=0.041 Score=57.69 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=27.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVS 245 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 245 (938)
+.+||+|.|-|||||||.+..++.- ....=..+.-|++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 6789999999999999999777653 11111235556654
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.38 E-value=0.031 Score=54.63 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.37 E-value=0.029 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|.|+|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.36 E-value=0.036 Score=54.45 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999875
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.34 E-value=0.045 Score=53.87 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 316
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.33 E-value=0.04 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|.|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999874
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.29 E-value=0.038 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|+|+|++|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999863
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.27 E-value=0.047 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|++|+||||+|+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999864
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.27 E-value=0.032 Score=54.67 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|+|+|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999874
No 320
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.24 E-value=0.08 Score=55.72 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 183 GRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 183 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+-+.-.+++++.+...- ..+....|.|+|++|+||||+++.++..
T Consensus 3 ~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34455566666653221 1234567999999999999999998874
No 321
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.22 E-value=0.3 Score=57.69 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCccccchHHHHHHHHHhhcccC-------CCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFG-------EEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.++.|-++.++++.+.+.-.-. .+-...+-|.++|++|.|||.+|+++++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 34677888888888776542210 01123456889999999999999999986
No 322
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.20 E-value=0.052 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|.|.|++|+||||+++.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999875
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.20 E-value=0.049 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|+|.|++|+||||+|+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.20 E-value=0.073 Score=53.67 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|++|+||||+|+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.18 E-value=0.035 Score=52.75 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.|.|++|+||||+|+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.15 E-value=0.043 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999864
No 327
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.14 E-value=0.046 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 328
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.13 E-value=0.063 Score=55.49 Aligned_cols=52 Identities=27% Similarity=0.301 Sum_probs=34.2
Q ss_pred CCccccchHHHHHHHHHhhcccCC------CCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 178 VSEVRGRDEEMNILKSKLLCEFGE------EQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 178 ~~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+++|.++.++++.+....-... +-.-.+-+.|+|++|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 457899887776665543221100 0001122899999999999999999985
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.12 E-value=0.042 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.12 E-value=0.043 Score=53.64 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999874
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.10 E-value=0.045 Score=53.53 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHc
Q 035647 208 IISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~ 228 (938)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999886
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.04 E-value=0.058 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|.+|+||||+|+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999874
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.03 E-value=0.043 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+++|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999874
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.03 E-value=0.051 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.03 E-value=0.049 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 336
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.01 E-value=0.036 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999864
No 337
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.99 E-value=0.066 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|.+|+|||||+..++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999999875
No 338
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.93 E-value=0.06 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998863
No 339
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.93 E-value=0.12 Score=57.69 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 185 DEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 185 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+.+..+...+... .+.+.|.|.+|+||||++..++..
T Consensus 31 ~~av~~~~~~i~~~-------~~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 31 KNAFNIVMKAIKEK-------KHHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHSS-------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-------CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 44455555555321 138999999999999999988875
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.91 E-value=0.053 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.90 E-value=0.05 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999874
No 342
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.88 E-value=0.038 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 343
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.86 E-value=0.32 Score=53.94 Aligned_cols=54 Identities=7% Similarity=0.015 Sum_probs=37.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEAL 261 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 261 (938)
...++.|.|.+|+||||+|..++...... .=..++|++.. .+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34589999999999999999988752211 12357787765 45667777766543
No 344
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.79 E-value=0.27 Score=54.14 Aligned_cols=42 Identities=31% Similarity=0.383 Sum_probs=29.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD 249 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 249 (938)
...+++|+|..|+|||||++.++.... .....+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccc
Confidence 467999999999999999999987422 223455554444443
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.78 E-value=0.049 Score=50.96 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 346
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.78 E-value=0.05 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|+|+|.+|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 347
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.73 E-value=0.35 Score=50.87 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+++|+|+.|+||||+++.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999874
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.73 E-value=0.054 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|++|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.70 E-value=0.04 Score=52.16 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 350
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.68 E-value=0.34 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+++.|+|.+|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998875
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.65 E-value=0.055 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 352
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.63 E-value=0.053 Score=52.19 Aligned_cols=25 Identities=12% Similarity=0.502 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999864
No 353
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.62 E-value=0.04 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
|.|.|+|++|+|||||++++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999998864
No 354
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.58 E-value=0.044 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++++|+|+.|+|||||++.+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999763
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.57 E-value=0.036 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=17.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 356
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.57 E-value=0.41 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.++|.+|+||||++..++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988865
No 357
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.55 E-value=0.24 Score=54.65 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=36.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEA 260 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 260 (938)
...++.|.|.+|+||||+|.+++...-.. =..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 34589999999999999999988763222 23577776543 555666665544
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.54 E-value=0.062 Score=54.56 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|.+|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999998774
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.53 E-value=0.1 Score=51.63 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=29.2
Q ss_pred chHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 184 RDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 184 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++..+.+...+.. ....+|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555554421 25789999999999999999998875
No 360
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.51 E-value=0.23 Score=55.26 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=35.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAII 258 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 258 (938)
...++.|.|.+|+||||||..++...... .=..++|++... +...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34589999999999999999998762221 113577877543 4566666654
No 361
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.50 E-value=0.067 Score=56.04 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|..|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 5679999999999999999998874
No 362
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.47 E-value=0.06 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|+|++|+||||+++.++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999853
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.45 E-value=0.069 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.40 E-value=0.081 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|+|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999874
No 365
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.38 E-value=0.26 Score=53.75 Aligned_cols=25 Identities=40% Similarity=0.317 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988865
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.37 E-value=0.062 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|.+|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 367
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.34 E-value=0.2 Score=50.51 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=32.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAI 257 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 257 (938)
.-.++.|.|.+|+|||++|.+++.+.. ...-..+++++... +.+.+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccC--CHHHHHHHH
Confidence 345899999999999999988765311 12224566766554 445544443
No 368
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.31 E-value=0.19 Score=64.77 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=54.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
..+.+.|+|++|+|||+||.+++..... .=..++|+++...++... ++.++.+.. .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4568999999999999999999875332 223578888877665544 445542211 1223344455555
Q ss_pred Hhhc-CceeeEEeCCC
Q 035647 280 ASIV-GKRFFLVLDDV 294 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv 294 (938)
+..+ .+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 4443 56789999999
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.29 E-value=0.059 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|.|.|++|+||||+|+.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.23 E-value=0.062 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|.+|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.22 E-value=0.066 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|.+|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 372
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.17 E-value=0.33 Score=53.20 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=54.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC--------------CCCcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGS--------------APNLG 269 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~~ 269 (938)
+-+.++|.|.+|+|||+|+.++++.. .+.+-+.++++-+++.. ...++.+++.+.-... ..+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 34578999999999999999998851 12234677888777654 3445565655431111 00111
Q ss_pred cH-----HHHHHHHHHhhc---CceeeEEeCCC
Q 035647 270 EL-----QSLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 270 ~~-----~~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
.. ....-.+.++++ ++..|+++||+
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 112333455554 57999999998
No 373
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.16 E-value=0.043 Score=58.58 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=58.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEF--RIAKAIIEALEGSAPNLGELQSLLQHIYASIV 283 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 283 (938)
..+++|+|+.|+||||+.+.+... ........++ .+.+..... .. .....+.... ... ......+...|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~-t~ed~~e~~~~~~-~~~v~q~~~~-~~~---~~~~~~La~aL~ 194 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHIL-TIEDPIEFVHESK-KCLVNQREVH-RDT---LGFSEALRSALR 194 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEE-EEESSCCSCCCCS-SSEEEEEEBT-TTB---SCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEE-EccCcHHhhhhcc-ccceeeeeec-ccc---CCHHHHHHHHhh
Confidence 349999999999999999988764 1111112221 111111100 00 0000000000 011 123347788888
Q ss_pred CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHHH
Q 035647 284 GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVVR 329 (938)
Q Consensus 284 ~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~~ 329 (938)
..+=+|++|++. +.+.++.+... ...|-.||+|+...+...
T Consensus 195 ~~PdvillDEp~--d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 195 EDPDIILVGEMR--DLETIRLALTA---AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred hCcCEEecCCCC--CHHHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence 889999999994 33333333332 223556888888765543
No 374
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.16 E-value=0.37 Score=49.88 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=47.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCCC---CCcccHHHHHHHHHHh
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFD-EFRIAKAIIEALEGSA---PNLGELQSLLQHIYAS 281 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 281 (938)
..+++++|.+|+||||++..++.... ..=..+.++....... ....+....+..+... ....+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67899999999999999999886522 2223455665543222 2233334444444321 1112333333333334
Q ss_pred hc-CceeeEEeCCCC
Q 035647 282 IV-GKRFFLVLDDVW 295 (938)
Q Consensus 282 l~-~~~~LlVlDdv~ 295 (938)
++ ..-=++|+|-..
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 43 333378888763
No 375
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.14 E-value=0.32 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.1
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+|.|+|++|+||||+|+.++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999999875
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.11 E-value=0.08 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|..|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998763
No 377
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.11 E-value=0.073 Score=52.15 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|+.|+|||||++.+..-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999864
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.11 E-value=0.34 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++++|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.10 E-value=0.19 Score=53.04 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=55.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcCce
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYASIVGKR 286 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 286 (938)
.+++|+|..|+|||||++.+..-. ..-...+.+.-......... + +.++.-.. ........+...+...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 489999999999999999998742 22244555543221110000 0 00000000 11123445666777788
Q ss_pred eeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChH
Q 035647 287 FFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEK 326 (938)
Q Consensus 287 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 326 (938)
=++++|++.. .+.++ +...+..+ +.-+|+||....
T Consensus 242 ~ilildE~~~--~e~~~-~l~~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRS--SEAYD-FYNVLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCS--THHHH-HHHHHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCCh--HHHHH-HHHHHhcC--CCEEEEEEcccH
Confidence 8999999943 22233 22233222 223677776544
No 380
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.04 E-value=0.44 Score=54.88 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999763
No 381
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.01 E-value=0.085 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|.|.|++|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.99 E-value=0.075 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.96 E-value=0.09 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999983
No 384
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.95 E-value=0.095 Score=50.29 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 188 MNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+..++..- ++.+.+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555321 23346999999999999999998875
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.94 E-value=0.074 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+++|+|.+|+||||+++.++.-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999999874
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.91 E-value=0.076 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 387
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.91 E-value=0.077 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|+|+.|+||||+++.++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999853
No 388
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.90 E-value=0.062 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999874
No 389
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.88 E-value=0.16 Score=54.50 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=28.2
Q ss_pred HHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 188 MNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+.+.+... ..+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 236789999999999999999988754
No 390
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.85 E-value=0.49 Score=50.01 Aligned_cols=37 Identities=22% Similarity=-0.003 Sum_probs=28.2
Q ss_pred HHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 188 MNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
--++++.|..- .+-+.++|+|.+|+|||+|+.++++.
T Consensus 162 GiraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 162 STRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred cchhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHH
Confidence 34566777542 23457899999999999999999885
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.77 E-value=0.078 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.77 E-value=0.18 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|+|..|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998863
No 393
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.75 E-value=0.082 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|.|..|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 394
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.75 E-value=0.081 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 395
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.74 E-value=0.079 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999998864
No 396
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.68 E-value=0.059 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 397
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.68 E-value=0.078 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|++|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.65 E-value=0.057 Score=53.20 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|.+|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 399
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.61 E-value=0.57 Score=51.16 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=58.3
Q ss_pred HHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC----
Q 035647 190 ILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNF-DEFRIAKAIIEALEGS---- 264 (938)
Q Consensus 190 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---- 264 (938)
++++.|..- .+-+.++|.|.+|+|||+|+.++++.. .+.+-+.++++-+++.. .+.++.+++.+.-...
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 455655432 134578999999999999999998751 12233567777777643 3345666665542111
Q ss_pred ---------CCCcccHH-----HHHHHHHHhhc---CceeeEEeCCC
Q 035647 265 ---------APNLGELQ-----SLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 265 ---------~~~~~~~~-----~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
..+..... ...-.+.++++ ++..||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01111111 12222344443 68999999998
No 400
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.59 E-value=0.07 Score=52.95 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|.|.|++|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.56 E-value=0.096 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 402
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.53 E-value=0.6 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=21.6
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...++|.|+|.+|+||||++..++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998864
No 403
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.52 E-value=0.13 Score=51.47 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEE
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWV 242 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 242 (938)
-.+++|+|+.|+|||||.+.+..- .....+.+++
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 358999999999999999999863 2233455554
No 404
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.48 E-value=0.14 Score=55.92 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHHhhcc-------cC-CCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCE-------FG-EEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.++.++.+...+... .. ......+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 35889988888887766321 00 00113456899999999999999999875
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.37 E-value=0.084 Score=50.70 Aligned_cols=22 Identities=32% Similarity=0.384 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998764
No 406
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.37 E-value=0.13 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|+.|+|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 407
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.15 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999999875
No 408
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.33 E-value=0.14 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 409
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.29 E-value=0.093 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|.|.|+||+||+|.|+.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.28 E-value=0.11 Score=54.02 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+++|+|..|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 411
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.16 E-value=0.23 Score=48.11 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=52.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHhh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN--LGELQSLLQHIYASI 282 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 282 (938)
.-.+..++|..|.||||.+...+.+... ..... +.+.... +.+.-...+.+.++..... ..+. ..+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kV-li~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~----~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHA-IVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSAS----KDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCE-EEEECC-------------------CCEEECSSG----GGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEE-EEEEecc--CCcchHHHHHhhcCCeeEEeecCCH----HHHHHHH
Confidence 3468899999999999999887775332 22233 3333221 1122223445554432211 1111 1222333
Q ss_pred cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 283 VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 283 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
.++--+|++|.+.--+.+.++.+. .+.+ .|-.||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEeccc
Confidence 333349999999654444443333 2222 277999999954
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.15 E-value=0.12 Score=53.96 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999975
No 413
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.12 E-value=0.39 Score=62.08 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=56.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHH
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIY 279 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 279 (938)
..+++.|+|.+|+||||||.+++.... ..=..++|++....++.. .++.++.+.. +..+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999999987632 222468899887766543 2555654321 2235566666555
Q ss_pred Hhhc-CceeeEEeCCCC
Q 035647 280 ASIV-GKRFFLVLDDVW 295 (938)
Q Consensus 280 ~~l~-~~~~LlVlDdv~ 295 (938)
...+ .+.-+||+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 4443 456799999984
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.09 E-value=0.086 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|+|+|++|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999874
No 415
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.02 E-value=0.15 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999975
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.98 E-value=0.11 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+|+|.|..|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999874
No 417
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.98 E-value=0.11 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999874
No 418
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.98 E-value=2 Score=57.66 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=72.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-hcCc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIYAS-IVGK 285 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~ 285 (938)
+-|.++|++|+|||++|+.+.... ..+ ..+.++++...+...+...+-..+......... +... -.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 468899999999999997777642 222 345677777766666555554443321100000 0000 0367
Q ss_pred eeeEEeCCCCCCCcCC------chhhhhhhccCC-----C-------CCEEEEEcCChH------HHHhc-ccCCeEecC
Q 035647 286 RFFLVLDDVWTDDYSK------WEPFHNCLMHGL-----R-------GSKILVTTRNEK------VVRMM-ESTDVISIK 340 (938)
Q Consensus 286 ~~LlVlDdv~~~~~~~------~~~l~~~l~~~~-----~-------gs~iivTtr~~~------~~~~~-~~~~~~~l~ 340 (938)
+.++++||+.-...+. .+.++..+..++ . +..+|.++.... +...+ .-...+.+.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Confidence 8899999973322222 222343332221 1 123444443221 11111 112467777
Q ss_pred CCChHHHHHHHHHhh
Q 035647 341 ELSEQECWWLFKRFA 355 (938)
Q Consensus 341 ~L~~~ea~~lf~~~~ 355 (938)
..+.++-..+|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777777776553
No 419
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.93 E-value=0.15 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 420
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.89 E-value=0.12 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999874
No 421
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.87 E-value=0.11 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.-.+++|+|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345899999999999999998884
No 422
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.86 E-value=0.28 Score=50.99 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=32.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFD-KRMWVCVSDNFDEFRIAKAIIE 259 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 259 (938)
-.+++|+|.+|+|||||++.++.... ..-. .++|+.... +...+...+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcC--CHHHHHHHHHH
Confidence 45899999999999999999887522 2212 466765432 34444444443
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.82 E-value=0.11 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 424
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.79 E-value=0.32 Score=55.60 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=53.3
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-Hhhc--
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPNLGELQSLLQHIY-ASIV-- 283 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~-- 283 (938)
+++.|.|.+|+||||++..+...... . ...+.+.+... .....+.+.++.. ...+........ .+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~--~-g~~Vl~~ApT~----~Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES--L-GLEVGLCAPTG----KAARRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH--T-TCCEEEEESSH----HHHHHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh--c-CCeEEEecCcH----HHHHHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 58899999999999999998874221 1 12333433322 1222333333211 122221110000 0000
Q ss_pred ---CceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 284 ---GKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 284 ---~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
.+.-+||+|++..-+...+..+...++ .+.++|+.--..
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEeccc
Confidence 123489999995544444444444443 466777765543
No 425
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.78 E-value=0.11 Score=48.95 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998874
No 426
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.77 E-value=0.12 Score=51.31 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 427
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.77 E-value=0.15 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 428
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.76 E-value=0.18 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.++.-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999999863
No 429
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.57 E-value=0.19 Score=58.26 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=36.3
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999998888777532 37899999999999999999875
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.57 E-value=0.14 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|+|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 458999999999999999999874
No 431
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.56 E-value=0.18 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|+.|+|||||.+.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999999863
No 432
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.56 E-value=0.089 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=16.4
Q ss_pred eEEEEEEecCCChHHHHHHHHH-cc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVY-ND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~-~~ 229 (938)
..+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3589999999999999999998 53
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.53 E-value=0.13 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.7
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|.|+|+.|+||||||+.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 434
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.49 E-value=0.16 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..-.|+|+|.+|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999999875
No 435
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.38 E-value=0.16 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|..|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 436
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.36 E-value=0.19 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|..|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 437
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.35 E-value=0.15 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-+.|.|.|.+|+||||||.+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999875
No 438
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.34 E-value=0.38 Score=52.82 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=49.9
Q ss_pred ceEEEEEEecCCChHHHHH-HHHHcccccccCCCe-EEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCcccHHH-
Q 035647 205 AIQIISMVGMGGIGKTTLA-QFVYNDSCVINNFDK-RMWVCVSDNF-DEFRIAKAIIEALEG-------SAPNLGELQS- 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~- 273 (938)
+-+.++|.|.+|+|||+|| .++++.. .-+. ++++-+++.. ++.++.+.+.+.=.. ...+......
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3457899999999999996 5777752 3453 4677776643 334445454432110 0111111111
Q ss_pred ----HHHHHHHhhc--CceeeEEeCCC
Q 035647 274 ----LLQHIYASIV--GKRFFLVLDDV 294 (938)
Q Consensus 274 ----~~~~l~~~l~--~~~~LlVlDdv 294 (938)
..-.+.++++ ++..|+++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1223445553 78999999998
No 439
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.32 E-value=0.15 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+++|+|..|+||||+++.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999874
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.32 E-value=0.19 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 441
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.29 E-value=0.19 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.29 E-value=0.13 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 443
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.24 E-value=0.13 Score=49.24 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.24 E-value=0.14 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 445
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.21 E-value=0.2 Score=50.42 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=28.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCC
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSD 246 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 246 (938)
-.++.|.|.+|+||||||.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 4589999999999999998887642 12224677877554
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.20 E-value=0.44 Score=60.76 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=0.0
Q ss_pred EEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHHhh
Q 035647 208 IISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAP-----NLGELQSLLQHIYASI 282 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l 282 (938)
++.|+|.+|+||||||.+++.. ....=..++|++....++... ++.++.+.. ...+.++....+....
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Q ss_pred c-CceeeEEeCCC
Q 035647 283 V-GKRFFLVLDDV 294 (938)
Q Consensus 283 ~-~~~~LlVlDdv 294 (938)
+ .+.-++|+|.+
T Consensus 458 ~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 458 RSGAVDVIVVDSV 470 (1706)
T ss_dssp HHTCCSEEEESCS
T ss_pred HhcCCCEEEECCH
No 447
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.16 E-value=0.2 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 448
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.16 E-value=0.11 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|..|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 449
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.07 E-value=0.16 Score=51.75 Aligned_cols=25 Identities=40% Similarity=0.403 Sum_probs=22.3
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...++.+.|.||+||||++..++..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.06 E-value=0.17 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4678999999999999999999874
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.92 E-value=0.18 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 452
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.84 E-value=0.39 Score=52.12 Aligned_cols=86 Identities=10% Similarity=0.191 Sum_probs=50.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcccccccCCC----eEEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCcccHH--
Q 035647 207 QIISMVGMGGIGKTTLAQFVYNDSCVINNFD----KRMWVCVSDNF-DEFRIAKAIIEA--LEG-----SAPNLGELQ-- 272 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~-- 272 (938)
+.++|.|.+|+|||+|+.++++.... +-+ .++++-+++.. .+.++.+.+.+. +.. ...+.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999999986332 222 55666666432 344555555442 110 011111111
Q ss_pred ---HHHHHHHHhhc---CceeeEEeCCC
Q 035647 273 ---SLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 273 ---~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
...-.+.++++ ++..|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12233556654 68999999998
No 453
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.84 E-value=0.18 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.5
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++|+|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998874
No 454
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.83 E-value=0.19 Score=44.82 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=25.0
Q ss_pred EEeecCCCCCc--ccchhhhcccCCCeEEeCCccccccCcc-CCCCCCCCcCCceEec
Q 035647 613 TIEIEECSNLR--RLPQRIGKLVNLRHLIFVDVYLDYMPKG-IERLTCLRTLSEFVVS 667 (938)
Q Consensus 613 ~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~ 667 (938)
.++.+++. ++ .+|..+ -++|++|+|++|.++.+|.+ |..+++|+.|++..|.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 44444444 44 455432 12455555555555555544 3445555555544443
No 455
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.83 E-value=0.48 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|+.|+|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 358999999999999999999763
No 456
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.80 E-value=0.22 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
-.+++|+|..|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999976
No 457
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.75 E-value=0.34 Score=53.18 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=49.7
Q ss_pred ceEEEEEEecCCChHHHHH-HHHHcccccccCCCe-EEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCcccHHH-
Q 035647 205 AIQIISMVGMGGIGKTTLA-QFVYNDSCVINNFDK-RMWVCVSDNFD-EFRIAKAIIEALEGS-------APNLGELQS- 273 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~- 273 (938)
+-+.++|.|.+|+|||+|| .++++.. +-+. ++++-+++..+ +.++.+.+.+.-... ..+......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3457899999999999996 5777752 3453 46677766433 344444444321111 111111111
Q ss_pred ----HHHHHHHhhc--CceeeEEeCCC
Q 035647 274 ----LLQHIYASIV--GKRFFLVLDDV 294 (938)
Q Consensus 274 ----~~~~l~~~l~--~~~~LlVlDdv 294 (938)
..-.+.++++ ++..|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1223445553 78999999998
No 458
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.61 E-value=0.16 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.6
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35668999999999999999998863
No 459
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.55 E-value=0.17 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
.+++|+|..|+|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.53 E-value=0.21 Score=47.67 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 461
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.52 E-value=0.24 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999874
No 462
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.48 E-value=0.25 Score=53.58 Aligned_cols=89 Identities=8% Similarity=0.108 Sum_probs=50.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccc--------cCCC-eEEEEEeCCCC-CHHHHHHHHHHH--hcC-----CCCCc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVI--------NNFD-KRMWVCVSDNF-DEFRIAKAIIEA--LEG-----SAPNL 268 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~ 268 (938)
-+.++|.|.+|+|||+|+.++++..... .+=+ .++++-+++.. .+.++.+.+.+. +.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999999864331 1112 45566666433 334455544332 110 01111
Q ss_pred ccHH-----HHHHHHHHhhc---CceeeEEeCCC
Q 035647 269 GELQ-----SLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 269 ~~~~-----~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
.... ...-.+.++++ ++..|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 12233455554 68999999998
No 463
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.33 E-value=0.18 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 464
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.24 E-value=0.21 Score=50.71 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=55.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC-CCHHHHHHHHHH--HhcCCCCCcccHHHHHHHHHHh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN-FDEFRIAKAIIE--ALEGSAPNLGELQSLLQHIYAS 281 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 281 (938)
.-.+++|+|+.|+|||||++.+..- ....+...+++.-... +-.... ..+.. .++. +.. .....+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~~---~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DTK---SFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TBS---CHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CHH---HHHHHHHHH
Confidence 4569999999999999999998764 2112233333321100 000000 00000 0000 011 123455566
Q ss_pred hcCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCChHHH
Q 035647 282 IVGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNEKVV 328 (938)
Q Consensus 282 l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~~~ 328 (938)
+...+=+|++|+.. +.+....+... ...|.-|++||......
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~---~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRA---AETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHH---HHTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHH---HccCCEEEEEeCcchHH
Confidence 66677789999984 22222222222 22366788888876543
No 465
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.22 E-value=0.15 Score=58.81 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred CccccchHHHHHHHHHhhcccCC--CCC---ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGE--EQH---AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~--~~~---~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+.++|.+..++.+.-.|.+.... .+. ...-|.++|.+|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 45788887666665555432100 000 0014889999999999999999875
No 466
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.19 E-value=0.21 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.4
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 467
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.18 E-value=0.19 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999865
No 468
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.17 E-value=0.26 Score=53.55 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 469
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.14 E-value=0.22 Score=49.57 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999885
No 470
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.08 E-value=0.24 Score=46.11 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..-.|.|+|.+|+|||||+..+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999999875
No 471
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.04 E-value=0.2 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=22.7
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcc
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....+|+|.|..|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35679999999999999999998863
No 472
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.01 E-value=0.19 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|..|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999874
No 473
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.00 E-value=0.19 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||.+.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999864
No 474
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.99 E-value=0.44 Score=54.97 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|..|+|||||++.+..-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3458999999999999999999763
No 475
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.99 E-value=0.2 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.+++|+|+.|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3458999999999999999999864
No 476
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.97 E-value=0.21 Score=52.26 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=29.0
Q ss_pred CceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCC
Q 035647 204 HAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDN 247 (938)
Q Consensus 204 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 247 (938)
...++|+|+|-||+||||+|..++.... ..=..++-|++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCC
Confidence 3578999999999999999988876421 11124666666543
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.94 E-value=0.1 Score=54.10 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=18.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998863
No 478
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.88 E-value=0.21 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.87 E-value=0.23 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...|+|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 480
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.86 E-value=0.21 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.++.|+|.+|+|||||+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999988763
No 481
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.81 E-value=0.39 Score=42.70 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=34.3
Q ss_pred CcchhccCCCcccEEeecCCCCCcccchh-hhcccCCCeEEeCCccc
Q 035647 600 ELPETCCELCNLQTIEIEECSNLRRLPQR-IGKLVNLRHLIFVDVYL 645 (938)
Q Consensus 600 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~l 645 (938)
.+|..+. .+|++|+|++|. ++.+|.. +..+++|++|+|++|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 4554322 369999999998 9999875 68899999999999864
No 482
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.79 E-value=0.2 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.+++|+|..|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 483
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.74 E-value=0.34 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..++++|+|++|+|||||++.++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4569999999999999999999863
No 484
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.67 E-value=0.71 Score=51.12 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCH-HHHHHH
Q 035647 190 ILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDE-FRIAKA 256 (938)
Q Consensus 190 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~ 256 (938)
++++.|..- .+-+.++|.|..|+|||+|+.++++. .+-+.++++-+++.... .++.+.
T Consensus 216 rvID~l~Pi-----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQ-----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCE-----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCc-----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 455666432 13457899999999999999999874 23357788888765543 344444
No 485
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.64 E-value=0.34 Score=48.73 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=28.0
Q ss_pred HHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 188 MNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 188 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
...+..+|.... ++...|.++|++|+|||.+|..+++.
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344666664321 23557999999999999999999874
No 486
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.63 E-value=0.47 Score=54.75 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-.+++|+|..|+|||||++.+..-
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.59 E-value=0.99 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEEecCCChHHHHHHHHHc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
-.+++|+|..|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998876
No 488
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.54 E-value=0.21 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-|+|+|.+|+|||||...+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4799999999999999998754
No 489
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.51 E-value=0.3 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.2
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999999875
No 490
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.50 E-value=0.12 Score=49.52 Aligned_cols=110 Identities=10% Similarity=0.046 Sum_probs=53.9
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcccccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHHhh
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYNDSCVINNFDKRMWVCVSDNFDEFRIAKAIIEALEGSAPN--LGELQSLLQHIYASI 282 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 282 (938)
.-++..++|..|+||||.+..+++.... ..+...++-..-. .+.-...+.+.++...+. ..+.. .+.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k~~~d---~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQVFKPEID---NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeccC---ccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 3479999999999999999888775322 2233333321111 111111222222211000 01111 233333
Q ss_pred cCceeeEEeCCCCCCCcCCchhhhhhhccCCCCCEEEEEcCCh
Q 035647 283 VGKRFFLVLDDVWTDDYSKWEPFHNCLMHGLRGSKILVTTRNE 325 (938)
Q Consensus 283 ~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 325 (938)
.+.-=+|++|.+..-+.+.++.+.. +.+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~-l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNK-IAE--SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHH-HHh--CCCEEEEEeccc
Confidence 3333499999985433333333332 222 277899998854
No 491
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.48 E-value=0.35 Score=53.95 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=32.5
Q ss_pred CccccchHHHHHHHHHhhcccCCCCCceEEEEEEecCCChHHHHHHHHHcc
Q 035647 179 SEVRGRDEEMNILKSKLLCEFGEEQHAIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 179 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+..+.|.+-.+.+.+..-. ......+|.+.|++|+||||+|+.+...
T Consensus 372 P~~f~rpeV~~vLr~~~~~----~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPP----RPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCC----GGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhccc----ccccceEEEecccCCCCHHHHHHHHHHH
Confidence 3455665555555554311 1224578999999999999999999985
No 492
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=88.46 E-value=0.22 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
-|.|+|.+|||||+|+..+..+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5789999999999999998765
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.45 E-value=0.25 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 494
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.41 E-value=0.31 Score=53.18 Aligned_cols=89 Identities=8% Similarity=0.076 Sum_probs=51.5
Q ss_pred eEEEEEEecCCChHHHHHHHHHcccccccCC--CeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCcccHH---
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYNDSCVINNF--DKRMWVCVSDNF-DEFRIAKAIIEALEG-------SAPNLGELQ--- 272 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 272 (938)
-+.++|.|.+|+|||+|+.+++++......- +.++++-+++.. .+.++.+.+...-.. ...+.....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 4567889999999999999999874331111 345666665433 344555555543110 011111111
Q ss_pred --HHHHHHHHhhc---CceeeEEeCCC
Q 035647 273 --SLLQHIYASIV---GKRFFLVLDDV 294 (938)
Q Consensus 273 --~~~~~l~~~l~---~~~~LlVlDdv 294 (938)
...-.+.++++ ++..|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 12233445554 68999999997
No 495
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.39 E-value=0.28 Score=46.64 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 496
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.36 E-value=0.22 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.9
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.-.|+|+|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999865
No 497
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.31 E-value=0.29 Score=46.55 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCChHHHHHHHHHcc
Q 035647 205 AIQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 205 ~~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..-.|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999999875
No 498
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.29 E-value=0.24 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHcc
Q 035647 208 IISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 208 vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.28 E-value=0.24 Score=46.29 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEEecCCChHHHHHHHHHc
Q 035647 207 QIISMVGMGGIGKTTLAQFVYN 228 (938)
Q Consensus 207 ~vi~I~G~~GiGKTtLa~~v~~ 228 (938)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999875
No 500
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.23 E-value=0.23 Score=46.13 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=21.0
Q ss_pred eEEEEEEecCCChHHHHHHHHHcc
Q 035647 206 IQIISMVGMGGIGKTTLAQFVYND 229 (938)
Q Consensus 206 ~~vi~I~G~~GiGKTtLa~~v~~~ 229 (938)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999865
Done!