BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035650
         (211 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a
          R151a Mutant
 pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a
          R151a Mutant
          Length = 493

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 5  AKSKAVKLRSHLDKYLVADDD 25
          A S AV LRSHL +YL AD D
Sbjct: 55 AGSAAVCLRSHLGRYLAADKD 75


>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
 pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
          Length = 493

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 5  AKSKAVKLRSHLDKYLVADDD 25
          A S AV LRSHL +YL AD D
Sbjct: 55 AGSAAVCLRSHLGRYLAADKD 75


>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
 pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
          Length = 493

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 5  AKSKAVKLRSHLDKYLVADDD 25
          A S AV LRSHL +YL AD D
Sbjct: 55 AGSAAVCLRSHLGRYLAADKD 75


>pdb|3P53|A Chain A, Structure Of Fascin
 pdb|3P53|B Chain B, Structure Of Fascin
          Length = 496

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 5  AKSKAVKLRSHLDKYLVADDD 25
          A S AV LRSHL +YL AD D
Sbjct: 58 AGSAAVCLRSHLGRYLAADKD 78


>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
          Protein
 pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
          Protein
 pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
 pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
          Length = 493

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 5  AKSKAVKLRSHLDKYLVADDD 25
          A S AV LRSHL +YL AD D
Sbjct: 55 AGSAAVCLRSHLGRYLAADKD 75


>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
 pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
          Length = 493

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 5  AKSKAVKLRSHLDKYLVADDD 25
          A S AV LRSHL +YL AD D
Sbjct: 55 AGSAAVCLRSHLGRYLAADKD 75


>pdb|1QND|A Chain A, Sterol Carrier Protein-2, Nmr, 20 Structures
          Length = 123

 Score = 26.9 bits (58), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 39 GKKATWIVELVENKGNVI----RLRSCYGKYLTASNIPFLLGMTG 79
          GK+ATW+V++   KG+V+    +   C    +T ++  FL  MTG
Sbjct: 45 GKEATWVVDVKNGKGSVLPNSDKKADC---TITMADSDFLALMTG 86


>pdb|2C0L|B Chain B, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
          Length = 122

 Score = 26.9 bits (58), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 39 GKKATWIVELVENKGNVI----RLRSCYGKYLTASNIPFLLGMTG 79
          GK+ATW+V++   KG+V+    +   C    +T ++  FL  MTG
Sbjct: 44 GKEATWVVDVKNGKGSVLPNSDKKADC---TITMADSDFLALMTG 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,113,973
Number of Sequences: 62578
Number of extensions: 238932
Number of successful extensions: 468
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 9
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)