Query 035650
Match_columns 211
No_of_seqs 127 out of 166
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04601 DUF569: Protein of un 100.0 2.1E-62 4.6E-67 400.9 16.2 142 1-146 1-142 (142)
2 cd00257 Fascin Fascin-like dom 99.3 9.7E-11 2.1E-15 90.1 11.6 97 9-121 3-100 (119)
3 PF06268 Fascin: Fascin domain 98.7 2.8E-08 6.1E-13 76.7 4.6 57 6-68 34-90 (111)
4 PF04601 DUF569: Protein of un 98.6 2.1E-07 4.6E-12 76.8 7.8 84 7-98 51-142 (142)
5 cd00257 Fascin Fascin-like dom 98.5 2.9E-07 6.2E-12 70.8 7.0 58 7-70 43-100 (119)
6 PF06268 Fascin: Fascin domain 98.0 4.5E-05 9.7E-10 58.8 9.1 91 17-121 2-92 (111)
7 PF06229 FRG1: FRG1-like famil 97.7 5.5E-05 1.2E-09 65.1 5.5 62 6-72 37-98 (191)
8 PF06229 FRG1: FRG1-like famil 97.5 0.00063 1.4E-08 58.6 9.2 90 18-121 2-96 (191)
9 PF00167 FGF: Fibroblast growt 96.5 0.01 2.2E-07 46.5 6.8 87 9-112 2-90 (122)
10 KOG3962 Predicted actin-bundli 95.8 0.022 4.8E-07 50.9 5.9 97 9-121 49-150 (246)
11 cd00058 FGF Acidic and basic f 95.3 0.039 8.5E-07 44.1 5.3 56 12-72 3-59 (123)
12 smart00442 FGF Acidic and basi 95.3 0.061 1.3E-06 43.1 6.3 60 8-72 3-63 (126)
13 PF14200 RicinB_lectin_2: Rici 95.0 0.24 5.1E-06 37.1 8.7 75 42-122 3-80 (105)
14 smart00472 MIR Domain in ryano 93.9 0.21 4.6E-06 33.6 5.5 50 100-151 3-57 (57)
15 smart00791 Agglutinin Amaranth 93.3 1.2 2.6E-05 37.1 10.0 100 9-120 7-112 (139)
16 PF00167 FGF: Fibroblast growt 92.9 0.42 9.1E-06 37.3 6.6 59 8-72 42-104 (122)
17 PF07468 Agglutinin: Agglutini 92.6 1.5 3.2E-05 37.1 9.8 119 9-133 7-137 (153)
18 PF05270 AbfB: Alpha-L-arabino 91.6 0.9 1.9E-05 37.6 7.2 102 9-122 2-118 (142)
19 KOG3359 Dolichyl-phosphate-man 91.1 10 0.00022 39.0 15.5 141 7-154 317-502 (723)
20 smart00791 Agglutinin Amaranth 90.7 1.5 3.2E-05 36.6 7.6 84 55-149 7-92 (139)
21 cd00058 FGF Acidic and basic f 90.4 1.7 3.6E-05 34.7 7.5 61 6-72 38-102 (123)
22 smart00472 MIR Domain in ryano 89.0 1.3 2.8E-05 29.7 5.1 43 5-48 5-56 (57)
23 PF14200 RicinB_lectin_2: Rici 87.9 3.4 7.3E-05 30.8 7.3 74 7-87 14-93 (105)
24 smart00442 FGF Acidic and basi 85.0 3.1 6.6E-05 33.4 6.0 58 8-71 44-105 (126)
25 KOG3359 Dolichyl-phosphate-man 78.5 17 0.00036 37.6 9.8 101 54-154 318-438 (723)
26 COG1928 PMT1 Dolichyl-phosphat 78.0 6.4 0.00014 40.4 6.7 81 1-83 360-463 (699)
27 PF02815 MIR: MIR domain; Int 77.4 7.3 0.00016 32.3 5.9 88 38-127 45-163 (190)
28 COG1928 PMT1 Dolichyl-phosphat 76.7 12 0.00025 38.5 8.1 109 54-169 306-434 (699)
29 KOG3885 Fibroblast growth fact 71.6 11 0.00024 31.8 5.6 58 14-76 32-91 (155)
30 KOG3358 Uncharacterized secret 59.1 1.2E+02 0.0025 26.9 9.6 111 7-122 38-166 (211)
31 KOG3533 Inositol 1,4,5-trispho 59.1 10 0.00023 42.2 3.8 68 4-72 241-327 (2706)
32 KOG3885 Fibroblast growth fact 52.5 39 0.00085 28.5 5.5 61 8-74 68-134 (155)
33 PF07468 Agglutinin: Agglutini 49.2 59 0.0013 27.6 6.1 89 54-148 6-100 (153)
34 PF05270 AbfB: Alpha-L-arabino 48.8 30 0.00064 28.6 4.2 63 5-71 48-118 (142)
35 PF03498 CDtoxinA: Cytolethal 45.5 72 0.0016 26.6 6.0 65 4-73 48-115 (150)
36 KOG3962 Predicted actin-bundli 44.7 19 0.00041 32.6 2.6 54 8-66 94-148 (246)
37 PF02815 MIR: MIR domain; Int 42.8 26 0.00056 29.0 3.0 67 6-73 67-159 (190)
38 COG1881 Phospholipid-binding p 38.4 45 0.00098 28.5 3.9 33 129-161 64-96 (174)
39 PF08709 Ins145_P3_rec: Inosit 32.6 82 0.0018 27.1 4.6 79 6-86 100-197 (214)
40 cd00161 RICIN Ricin-type beta- 22.9 2.8E+02 0.006 19.5 11.6 96 11-122 2-102 (124)
No 1
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=100.00 E-value=2.1e-62 Score=400.88 Aligned_cols=142 Identities=55% Similarity=0.962 Sum_probs=137.0
Q ss_pred CCCCCCCCEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcc
Q 035650 1 MEVFAKSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGN 80 (211)
Q Consensus 1 ME~F~d~~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~ 80 (211)
||+|+|++||||||++||||+|||||++|+|+++++ ++| |+|+||+++++.++|+|||||||||+||+.+|++||+|+
T Consensus 1 Me~F~d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~-s~n-a~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~ 78 (142)
T PF04601_consen 1 MEFFPDGKHVRLRSHHGKYLHADEDGEGVSQDRRGA-SLN-AAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGR 78 (142)
T ss_pred CCccCCCCEEEEEecCCCEEEEcCCCCeEEECCCCC-CCc-ceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCC
Confidence 999999999999999999999999999999999999 999 999999998778999999999999999999999999999
Q ss_pred eEEeecCCccCCCCceeeEEEecCCEEEEeccCCceeeeCCCCCCCCceeEeeCCCCCCccceEEE
Q 035650 81 KVVQAVPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGGTPPWRNSLTHDEPHTGSTKNWILW 146 (211)
Q Consensus 81 ~v~Q~~~~~~~d~~~i~Wepir~g~~V~Lr~~~gr~LRANG~~~pWrn~VTvD~~~~~~~~~~m~W 146 (211)
+|+|++++++ + +.+|||||++|++|+||+++||||||||++|||||+||||+++++.+++||+|
T Consensus 79 ~v~Q~~~~~~-d-~~~~Wepvr~g~~V~Lr~~~gr~LRANG~~~~Wrn~VT~D~~~~s~~~~wv~w 142 (142)
T PF04601_consen 79 RVVQTDPDRL-D-SSVEWEPVRDGFYVKLRHRSGRYLRANGGYPPWRNSVTVDVPHRSATQDWVLW 142 (142)
T ss_pred EEEecCCccC-C-CCceEEEecCCCEEEEEecCCceEEcCCCCCCCcceEEecCCCCCeEEEEEEC
Confidence 9999999985 5 79999999999999999999999999999999999999999999888888887
No 2
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.26 E-value=9.7e-11 Score=90.10 Aligned_cols=97 Identities=28% Similarity=0.346 Sum_probs=73.1
Q ss_pred EEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcceEEeecCC
Q 035650 9 AVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPE 88 (211)
Q Consensus 9 ~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~~v~Q~~~~ 88 (211)
.|.|||+.||||.|+++|..|.+++... ... ..|.++... ++.|.||++.||||++.++. . ++.+.+
T Consensus 3 ~v~Lrs~~gkyl~~~~~g~~v~a~~~~~-~~~-e~F~l~~~~--~g~v~Lrs~~G~yls~~~~g-------~--l~~~~~ 69 (119)
T cd00257 3 QVVLRSVNGRYLSAEAGGDKVDANRDSL-KGD-ETFTLEFDN--TGKYALRSHDGKYLSADSDG-------G--VQLEGH 69 (119)
T ss_pred EEEEEEcCCCEEEEeccCCEEEEcCccC-CCc-eEEEEEECC--CCeEEEEECCCcEEEEECCC-------C--EEecCC
Confidence 5899999999999999996689988777 667 889999764 68899999999999986532 1 222332
Q ss_pred ccCCCCceeeEEEecC-CEEEEeccCCceeeeCC
Q 035650 89 EKNMDWIFQWEPIRDG-FQIKLKSWCGKFLRANG 121 (211)
Q Consensus 89 ~~~d~~~i~Wepir~g-~~V~Lr~~~gr~LRANG 121 (211)
+ . ..-.|.....+ +.|.||..+|+||.++.
T Consensus 70 -~-~-~~e~F~~e~~~~g~~al~~~~G~yl~~~~ 100 (119)
T cd00257 70 -P-N-ADCRFTLEFHGDGKWALRAENGRYLGGDG 100 (119)
T ss_pred -C-C-CCcEEEEEECCCCeEEEEcCCCCEEeecC
Confidence 2 1 23335554433 58889999999999974
No 3
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.66 E-value=2.8e-08 Score=76.68 Aligned_cols=57 Identities=37% Similarity=0.493 Sum_probs=49.8
Q ss_pred CCCEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCcccc
Q 035650 6 KSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTA 68 (211)
Q Consensus 6 d~~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~a 68 (211)
+...|.||++.||||.+|.||. |..+.+.. ..+ +.|.++.. ++.+.|+.+.||||++
T Consensus 34 ~~~~v~lrs~~GkYls~~~~G~-v~~~~~~~-~~~-~~F~i~~~---~~~~~~~~~nGkYl~~ 90 (111)
T PF06268_consen 34 GSYKVALRSHNGKYLSVDSDGS-VVADSETP-GPD-EFFEIEWH---GGKVALRASNGKYLSA 90 (111)
T ss_dssp TEEEEEEECTTSEEEEEETTSE-EEEEESSS-SGG-GCBEEEEE---TTEEEEECTTSCEEEE
T ss_pred CCCEEEEEcCCCCEEEEcCCCe-EEecCCCC-CCC-cEEEEEEC---CCEEEEECCCCCEEee
Confidence 4567899999999999999997 88888766 667 99999987 6889999999999995
No 4
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=98.57 E-value=2.1e-07 Score=76.82 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=57.9
Q ss_pred CCEEEEeecCCceEEeeCC-------CCcEEEcCC-CCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCC
Q 035650 7 SKAVKLRSHLDKYLVADDD-------QERVRQSRN-GASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMT 78 (211)
Q Consensus 7 ~~~VRLRS~~gkYL~ADeD-------G~~Vs~~~~-~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~ 78 (211)
..+|+|||+.|+||.|-+. |+.|.|... .. -.. .-|... .++.+|+|++.|||||-|+....|.-
T Consensus 51 ~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q~~~~~~-d~~-~~Wepv---r~g~~V~Lr~~~gr~LRANG~~~~Wr-- 123 (142)
T PF04601_consen 51 PNYVRLRSAYGRYLAASDEPALLGHTGRRVVQTDPDRL-DSS-VEWEPV---RDGFYVKLRHRSGRYLRANGGYPPWR-- 123 (142)
T ss_pred CCEEEEeeccCceEeccCCcCCCCCCCCEEEecCCccC-CCC-ceEEEe---cCCCEEEEEecCCceEEcCCCCCCCc--
Confidence 5799999999999999877 577888642 22 223 567543 24679999999999999998865552
Q ss_pred cceEEeecCCccCCCCceee
Q 035650 79 GNKVVQAVPEEKNMDWIFQW 98 (211)
Q Consensus 79 G~~v~Q~~~~~~~d~~~i~W 98 (211)
+.|+-..+.....++.|+|
T Consensus 124 -n~VT~D~~~~s~~~~wv~w 142 (142)
T PF04601_consen 124 -NSVTVDVPHRSATQDWVLW 142 (142)
T ss_pred -ceEEecCCCCCeEEEEEEC
Confidence 3354444443322356666
No 5
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=98.53 E-value=2.9e-07 Score=70.78 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=50.5
Q ss_pred CCEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCccccCC
Q 035650 7 SKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASN 70 (211)
Q Consensus 7 ~~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~ 70 (211)
...|.||++.|+||.+++||. |..+.. . ... ..|.+|... ++.|.||+.+|+||++..
T Consensus 43 ~g~v~Lrs~~G~yls~~~~g~-l~~~~~-~-~~~-e~F~~e~~~--~g~~al~~~~G~yl~~~~ 100 (119)
T cd00257 43 TGKYALRSHDGKYLSADSDGG-VQLEGH-P-NAD-CRFTLEFHG--DGKWALRAENGRYLGGDG 100 (119)
T ss_pred CCeEEEEECCCcEEEEECCCC-EEecCC-C-CCC-cEEEEEECC--CCeEEEEcCCCCEEeecC
Confidence 567899999999999999996 888887 6 667 899999864 678999999999999964
No 6
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.02 E-value=4.5e-05 Score=58.82 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=65.9
Q ss_pred CceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcceEEeecCCccCCCCce
Q 035650 17 DKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIF 96 (211)
Q Consensus 17 gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~~v~Q~~~~~~~d~~~i 96 (211)
++|+.+..-+..|.+.+... +.. ..|++|... +...|.||++.|+||.+..+. .-+...+ .+ + ...
T Consensus 2 ~~~~~~~k~~~~l~an~~~~-~~~-e~f~le~~~-~~~~v~lrs~~GkYls~~~~G-------~v~~~~~--~~-~-~~~ 67 (111)
T PF06268_consen 2 NGYLVSEKFGAHLNANRASL-SDW-ETFQLEFDD-GSYKVALRSHNGKYLSVDSDG-------SVVADSE--TP-G-PDE 67 (111)
T ss_dssp TEEEEETTCTCBEEEEESSS-SCG-GSEEEEEET-TEEEEEEECTTSEEEEEETTS-------EEEEEES--SS-S-GGG
T ss_pred CcEEEEEEcCCEEECChhcC-ccc-EEEEEEEEC-CCCEEEEEcCCCCEEEEcCCC-------eEEecCC--CC-C-CCc
Confidence 57999999998899987655 667 899999764 346778999999999975533 2232223 22 2 344
Q ss_pred eeEEEecCCEEEEeccCCceeeeCC
Q 035650 97 QWEPIRDGFQIKLKSWCGKFLRANG 121 (211)
Q Consensus 97 ~Wepir~g~~V~Lr~~~gr~LRANG 121 (211)
.|+.+..|..+.|+..+|+||.+.+
T Consensus 68 ~F~i~~~~~~~~~~~~nGkYl~~~~ 92 (111)
T PF06268_consen 68 FFEIEWHGGKVALRASNGKYLSAGP 92 (111)
T ss_dssp CBEEEEETTEEEEECTTSCEEEEET
T ss_pred EEEEEECCCEEEEECCCCCEEeeCC
Confidence 4555555889999999999999554
No 7
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=97.73 E-value=5.5e-05 Score=65.11 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=39.7
Q ss_pred CCCEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCC
Q 035650 6 KSKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIP 72 (211)
Q Consensus 6 d~~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~ 72 (211)
+...|.|||++||||.+|.+|. |+.+.+.- ++. ..|.+... ++....++.++++||...+..
T Consensus 37 ~~~~iafKs~~GkYLs~Dk~G~-v~a~sdAi-Gp~-E~f~~V~~--~~~~a~~~~~~~~FLs~~~~~ 98 (191)
T PF06229_consen 37 GDEKIAFKSGHGKYLSCDKDGI-VSARSDAI-GPQ-EQFEPVFQ--DGKPALFSSSNNKFLSVDEEG 98 (191)
T ss_dssp SSS-EEEEETTS-BEEE-SSSB-EEE--SS---TT-TBEEEE-S--TT--EEEE-TTS-BEEE-SSS
T ss_pred CCCceEeeccCccEEEEcCCCc-EEEEeecC-CCc-eEEEEEEC--CCCeEEEecCCCeEEEEeccc
Confidence 4567999999999999999998 88888766 778 89988553 234444444999999998854
No 8
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=97.53 E-value=0.00063 Score=58.62 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=47.3
Q ss_pred ceEEeeCCCCcEEEcC----CCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcceEEeecCCccCCC
Q 035650 18 KYLVADDDQERVRQSR----NGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMD 93 (211)
Q Consensus 18 kYL~ADeDG~~Vs~~~----~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~~v~Q~~~~~~~d~ 93 (211)
.||.|=+||.-..-.+ +++ ++. -+|..-.++ ++..|.|||+|||||++... |.-+.+.+--.|.
T Consensus 2 syi~a~d~G~~t~~ePhd~~~~p-~p~-qV~va~~v~-~~~~iafKs~~GkYLs~Dk~-------G~v~a~sdAiGp~-- 69 (191)
T PF06229_consen 2 SYIEALDNGLFTTGEPHDVGEGP-DPR-QVWVATRVP-GDEKIAFKSGHGKYLSCDKD-------GIVSARSDAIGPQ-- 69 (191)
T ss_dssp -BEEE-TTS-EEE----SSS-----TT-T-EEEEE---SSS-EEEEETTS-BEEE-SS-------SBEEE--SS--TT--
T ss_pred ceeeeeccCCccccCCCcCCCCC-Chh-HeEEEEEec-CCCceEeeccCccEEEEcCC-------CcEEEEeecCCCc--
Confidence 5999999998333222 455 677 899999886 56789999999999998643 3445455532221
Q ss_pred CceeeEEEec-CCEEEEeccCCceeeeCC
Q 035650 94 WIFQWEPIRD-GFQIKLKSWCGKFLRANG 121 (211)
Q Consensus 94 ~~i~Wepir~-g~~V~Lr~~~gr~LRANG 121 (211)
=.|+||-. |...++...+++||-.+.
T Consensus 70 --E~f~~V~~~~~~a~~~~~~~~FLs~~~ 96 (191)
T PF06229_consen 70 --EQFEPVFQDGKPALFSSSNNKFLSVDE 96 (191)
T ss_dssp --TBEEEE-STT--EEEE-TTS-BEEE-S
T ss_pred --eEEEEEECCCCeEEEecCCCeEEEEec
Confidence 14999876 445566557899998876
No 9
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=96.52 E-value=0.01 Score=46.48 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=63.1
Q ss_pred EEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCCCCCCCCcceEEeecC
Q 035650 9 AVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIPFLLGMTGNKVVQAVP 87 (211)
Q Consensus 9 ~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~~~lG~~G~~v~Q~~~ 87 (211)
.++|=++.|+||.-.+||. |.-..+.. +.. +.|.++.+. .+.|+|++ ..++||.-... |+-.....+
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~-V~gt~~~~-~~~-s~~~i~~~~--~g~V~i~~~~s~~YLcmn~~-------G~ly~~~~~ 69 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGT-VDGTGDDN-SPY-SVFEIHSVG--FGVVRIRGVKSCRYLCMNKC-------GRLYGSKNF 69 (122)
T ss_dssp EEEEEETTSEEEEEETTSB-EEEESSTT-STT-GEEEEEEEE--TTEEEEEETTTTEEEEEBTT-------SBEEEESSB
T ss_pred CEEEEECCCeEEEECCCCe-EeCCCCcC-cce-eEEEEEecc--ceEEEEEEecceEEEEECCC-------CeEcccccc
Confidence 5778888899999999997 98888777 778 999999885 47999999 79999987653 343433333
Q ss_pred CccCCCCceeeE-EEecCCEEEEecc
Q 035650 88 EEKNMDWIFQWE-PIRDGFQIKLKSW 112 (211)
Q Consensus 88 ~~~~d~~~i~We-pir~g~~V~Lr~~ 112 (211)
. ....|. -+.++.+..+...
T Consensus 70 ~-----~~C~F~e~~~~n~y~~~~s~ 90 (122)
T PF00167_consen 70 N-----KDCVFREELLENGYNTYESA 90 (122)
T ss_dssp T-----GGGEEEEEEETTSEEEEEES
T ss_pred C-----CCceEEEEEccCCEEEEEec
Confidence 2 233344 3445666666543
No 10
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=95.77 E-value=0.022 Score=50.86 Aligned_cols=97 Identities=27% Similarity=0.390 Sum_probs=57.1
Q ss_pred EEEEeecCCceEEeeCCCCcEEEcC----CCCCCCCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcceEEe
Q 035650 9 AVKLRSHLDKYLVADDDQERVRQSR----NGASSGKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQ 84 (211)
Q Consensus 9 ~VRLRS~~gkYL~ADeDG~~Vs~~~----~~~~s~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~~v~Q 84 (211)
+|-+.---|+||+|-++|..-..-+ .++ .+..-..+|.+. +..|+|+|+||+||+.+.+.-.-| .|
T Consensus 49 ~v~ie~~~~~yl~a~dng~ft~g~ph~~~~gp-~p~e~f~avki~---dsrIaLKsGyGKYlsinsdglvvg------~q 118 (246)
T KOG3962|consen 49 TVAIEIDDGTYLGAMDNGLFTLGAPHDEVDGP-EPEEQFMAVKIS---DSRIALKSGYGKYLSINSDGLVVG------RQ 118 (246)
T ss_pred EEEEEecCceEEEEEecCceeeccCCccccCC-CchhhEEEEEcc---CceEEecccccceeeecCCccEEE------eh
Confidence 5555555589999999998333322 244 444134445433 589999999999999887653332 12
Q ss_pred ecCCccCCCCceeeEEEec-CCEEEEeccCCceeeeCC
Q 035650 85 AVPEEKNMDWIFQWEPIRD-GFQIKLKSWCGKFLRANG 121 (211)
Q Consensus 85 ~~~~~~~d~~~i~Wepir~-g~~V~Lr~~~gr~LRANG 121 (211)
--....++ |+|+-. |...+|.. ++.|.+-|.
T Consensus 119 eAvG~~EQ-----w~~vFq~~r~a~~as-~s~~~~~~e 150 (246)
T KOG3962|consen 119 EAVGSREQ-----WEPVFQEGRMALLAS-NSCFIRCNE 150 (246)
T ss_pred hhcCcHhh-----chhhhhccceEEeec-cceeEEech
Confidence 22222223 887654 44555543 455555554
No 11
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=95.30 E-value=0.039 Score=44.08 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=46.4
Q ss_pred EeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCC
Q 035650 12 LRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIP 72 (211)
Q Consensus 12 LRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~ 72 (211)
|=++.+.||.-+.||+ |.-.++.. +.. +.|.++.+. .+.|+||+ +.++||+-...-
T Consensus 3 Ly~~~~~~L~I~~dG~-V~Gt~~~~-~~~-s~l~~~s~~--~g~v~i~~v~s~~YLCmn~~G 59 (123)
T cd00058 3 LYCRTGFHLQILPDGT-VDGTRDDS-SSY-TILERIAVA--VGVVSIKGVASCRYLCMNKCG 59 (123)
T ss_pred EEEcCCeEEEEcCCCc-EecccCCC-CCC-ceEEEEECC--CCEEEEEEcccceEEEECCCC
Confidence 3344589999999998 88888777 778 999999864 78999999 799999987543
No 12
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=95.25 E-value=0.061 Score=43.14 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=49.8
Q ss_pred CEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCC
Q 035650 8 KAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIP 72 (211)
Q Consensus 8 ~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~ 72 (211)
..++|=++.|.||.-+.||. |.-.++.. +.. +.|.++.+. .+.|+||+ ..++||.-...-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~-V~Gt~~~~-~~~-~ile~~s~~--~g~V~ik~~~s~~YLCmn~~G 63 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGT-VDGTRDES-SSF-TILEIIAVA--VGVVAIKGVASCRYLCMNKCG 63 (126)
T ss_pred eEEEEEeCCCeEEEEcCCce-EecccCCC-Ccc-eEEEEEecc--CCEEEEEEcccceEEEECCCC
Confidence 46677788889999999997 88877776 777 999888764 58999999 799999887644
No 13
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.05 E-value=0.24 Score=37.12 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=56.3
Q ss_pred ceeEEEEEecCCceEEEcc-cCCCccccCCCCCCCCCCcceEEeecCCccCCCCceeeEEEecC-CEEEEecc-CCceee
Q 035650 42 ATWIVELVENKGNVIRLRS-CYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRDG-FQIKLKSW-CGKFLR 118 (211)
Q Consensus 42 a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~~~lG~~G~~v~Q~~~~~~~d~~~i~Wepir~g-~~V~Lr~~-~gr~LR 118 (211)
-.|.+..+.+.+++..|++ +.|+||......... |..|.|..+.. . ++-.|+.+..+ +++.|+.. +|++|=
T Consensus 3 Q~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~---g~~v~~~~~~~--~-~~Q~W~i~~~~~g~y~I~n~~s~~~Ld 76 (105)
T PF14200_consen 3 QQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTAN---GTNVQQWTCNG--N-DNQQWKIEPVGDGYYRIRNKNSGKVLD 76 (105)
T ss_dssp GEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCST---TEBEEEEESSS--S-GGGEEEEEESTTSEEEEEETSTTEEEE
T ss_pred CEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCC---CcEEEEecCCC--C-cCcEEEEEEecCCeEEEEECCCCcEEE
Confidence 7899999875678899999 899999987754333 56888888764 2 57789998875 46777664 588886
Q ss_pred eCCC
Q 035650 119 ANGG 122 (211)
Q Consensus 119 ANG~ 122 (211)
..++
T Consensus 77 v~~~ 80 (105)
T PF14200_consen 77 VAGG 80 (105)
T ss_dssp EGGG
T ss_pred ECCC
Confidence 6544
No 14
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=93.88 E-value=0.21 Score=33.62 Aligned_cols=50 Identities=28% Similarity=0.607 Sum_probs=33.9
Q ss_pred EEecCCEEEEecc-CCceeeeCCCC-CCCCc---eeEeeCCCCCCccceEEEEEEEe
Q 035650 100 PIRDGFQIKLKSW-CGKFLRANGGT-PPWRN---SLTHDEPHTGSTKNWILWDVESV 151 (211)
Q Consensus 100 pir~g~~V~Lr~~-~gr~LRANG~~-~pWrn---~VTvD~~~~~~~~~~m~W~VE~V 151 (211)
.|+.|+.|+|+|. .|+||...... ++|.. -||.......... -+|.||.+
T Consensus 3 ~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~--~~W~ie~~ 57 (57)
T smart00472 3 FVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDAN--TLWLIEPV 57 (57)
T ss_pred ccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCC--CcEEEEeC
Confidence 4677999999996 59999998876 78763 6776432211111 25998863
No 15
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=93.33 E-value=1.2 Score=37.06 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=65.9
Q ss_pred EEEEeecCCceEEeeCCCC--cEEEcCC-CCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCCCCCCCCcceEEe
Q 035650 9 AVKLRSHLDKYLVADDDQE--RVRQSRN-GASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIPFLLGMTGNKVVQ 84 (211)
Q Consensus 9 ~VRLRS~~gkYL~ADeDG~--~Vs~~~~-~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~~~lG~~G~~v~Q 84 (211)
+|-.|+--||||.+---+. -+.++.+ -. .+- +++.|+... ++.|.+|+ -.|||-.+++.- .-+.-
T Consensus 7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~-dp~-v~~ev~~~~--dg~V~ik~~~~nKfWr~s~~W-------I~a~s 75 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKIL-DPL-VQFEVFPTY--NGLVHIKSNYTNKFWRLSHYW-------ITADA 75 (139)
T ss_pred EEEEEcCCCceEEEEeecccceeEecccccC-Ccc-eeEEEEEcC--CCcEEEEecCCCceEccCCCE-------EEecC
Confidence 8899999999999875221 1222222 22 445 888888743 78999999 589998877322 12223
Q ss_pred ecCCccCCCCceeeEEEe-cCCEEEEecc-CCceeeeC
Q 035650 85 AVPEEKNMDWIFQWEPIR-DGFQIKLKSW-CGKFLRAN 120 (211)
Q Consensus 85 ~~~~~~~d~~~i~Wepir-~g~~V~Lr~~-~gr~LRAN 120 (211)
.++++..+ ..-+.+||. +++.+.|||. .|+|.+-.
T Consensus 76 ~d~~e~~s-scTLF~Pv~~d~~~i~lr~vq~~~~~~r~ 112 (139)
T smart00791 76 NDPDENKS-ACTLFRPLYVEMKKIRLLNVQLGHYTKRY 112 (139)
T ss_pred CCCccCCC-cccEEeEEeccCceEEEEEecCCceEEee
Confidence 34544444 677888887 5678999986 46665443
No 16
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=92.94 E-value=0.42 Score=37.33 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=47.8
Q ss_pred CEEEEeec-CCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cC--CCccccCCCC
Q 035650 8 KAVKLRSH-LDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CY--GKYLTASNIP 72 (211)
Q Consensus 8 ~~VRLRS~-~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ay--GRYL~as~~~ 72 (211)
..|+||+- .++||+=|++|+ |+-+.... . + +.|..+..+ +.+..+.| .| +.||+-...-
T Consensus 42 g~V~i~~~~s~~YLcmn~~G~-ly~~~~~~-~-~-C~F~e~~~~--n~y~~~~s~~~~~~~yla~~~~G 104 (122)
T PF00167_consen 42 GVVRIRGVKSCRYLCMNKCGR-LYGSKNFN-K-D-CVFREELLE--NGYNTYESAKYGRGWYLAFNRRG 104 (122)
T ss_dssp TEEEEEETTTTEEEEEBTTSB-EEEESSBT-G-G-GEEEEEEET--TSEEEEEESTTGTTEBCEBCTTS
T ss_pred eEEEEEEecceEEEEECCCCe-EccccccC-C-C-ceEEEEEcc--CCEEEEEeccCCccEEEEECCCC
Confidence 48999998 799999999999 77766554 3 7 999987764 68999999 45 9999987654
No 17
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=92.62 E-value=1.5 Score=37.06 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=68.7
Q ss_pred EEEEeecCCceEEeeCCCC----cEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCCCCCCCCcceEE
Q 035650 9 AVKLRSHLDKYLVADDDQE----RVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIPFLLGMTGNKVV 83 (211)
Q Consensus 9 ~VRLRS~~gkYL~ADeDG~----~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~~~lG~~G~~v~ 83 (211)
+|..+...||||.+-.++. -+.++.+-.+.+. +++.||.....++.|.+|+ -.|||-..+... +.-.-+.
T Consensus 7 ~V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~-v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n----~~WI~ad 81 (153)
T PF07468_consen 7 YVAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPY-VKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPN----DYWIWAD 81 (153)
T ss_dssp CEEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CC-G-EEEEE-SSTTT-EEEEETTTTEEEEESCCC------BEEEE
T ss_pred EEEEEcCCCcEEEEEecccccceeEEecCCcCCCCc-eeEEEEEcccCCCeEEEEeccCCceeEeCCCC----CcEEEec
Confidence 6777778999999876332 2444443332567 8999998555578999999 589999964322 0111122
Q ss_pred eecCCc--cCCCCceeeEEEecC----CEEEEecc-CCceeeeCCCCCCCCceeEee
Q 035650 84 QAVPEE--KNMDWIFQWEPIRDG----FQIKLKSW-CGKFLRANGGTPPWRNSLTHD 133 (211)
Q Consensus 84 Q~~~~~--~~d~~~i~Wepir~g----~~V~Lr~~-~gr~LRANG~~~pWrn~VTvD 133 (211)
-.++++ ... ..-+.+||+-+ ..|.|++. .|+|.+-+---.+|.+..-..
T Consensus 82 a~~p~ed~s~~-~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~sCL~A~ 137 (153)
T PF07468_consen 82 ADDPDEDQSKP-SCTLFEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFVSCLNAA 137 (153)
T ss_dssp ESSHHH-TCST-CGG-EEEEESCCCETTEEEEEETTTTEEEEEE--STTBSSEEEEE
T ss_pred CCCcccccCCC-CceEEEEEEecCCCccEEEEEecCCceEEEEEccCCcceeeEeec
Confidence 122222 112 56778898743 57888886 578876664444577766554
No 18
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=91.60 E-value=0.9 Score=37.59 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=57.9
Q ss_pred EEEEeec--CCceEEeeCCCCcEEEcCCCCCCC----CcceeEEEEEecCCceEEEccc--CCCccccCCCCCCCCCCcc
Q 035650 9 AVKLRSH--LDKYLVADDDQERVRQSRNGASSG----KKATWIVELVENKGNVIRLRSC--YGKYLTASNIPFLLGMTGN 80 (211)
Q Consensus 9 ~VRLRS~--~gkYL~ADeDG~~Vs~~~~~~~s~----~~a~W~Ve~~~~~~~~v~LqSa--yGRYL~as~~~~~lG~~G~ 80 (211)
.+||+|. -++||..++. .|..+.-...+. ..+.|.|..-..+..+|.|+|+ -|.||...+.. .
T Consensus 2 ~~~~~s~~~~~ryirh~~~--~~~~~~v~~~s~~~~r~da~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~~-------v 72 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGS--LVRLDPVSSSSSALDRADATFRVVPGLADSSCVSFESVNYPGYYLRHSNFR-------V 72 (142)
T ss_dssp EEEEEESSSTTEEEEEETT--EEEEEES-SSGGHHHHHGG-EEEEE-SS-TTCEEEEESSSTTEEEEEETTE-------E
T ss_pred eEEEECCCCCCeEEEEcCc--eEEEeeccCCcchhhccCceEEEEEccCCCCEEEEEECCCCCcEEEEECCE-------E
Confidence 3688887 5899988653 356654333122 1388999754456789999994 59999764432 1
Q ss_pred eEEeecCCcc--CCCCceeeEEEec---CCEEEEeccC--CceeeeCCC
Q 035650 81 KVVQAVPEEK--NMDWIFQWEPIRD---GFQIKLKSWC--GKFLRANGG 122 (211)
Q Consensus 81 ~v~Q~~~~~~--~d~~~i~Wepir~---g~~V~Lr~~~--gr~LRANG~ 122 (211)
++.+.+-+.. +| .. |.+... .+.|.|+..+ |+|||-.+.
T Consensus 73 ~l~~~d~s~~F~~d-AT--F~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~~ 118 (142)
T PF05270_consen 73 RLEKNDGSALFRED-AT--FCPRPGLAGPGYVSFESYNYPGRYLRHYNG 118 (142)
T ss_dssp EEEE--SSHHHHHH-T---EEEEE-SSSTTEEEEEESSSTTEEEEEETT
T ss_pred EEeecCCCccccCC-ce--EEEecCCCCCCcceEEEecCCCeEEEEECC
Confidence 2222222211 13 33 444432 3578888764 899997653
No 19
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=10 Score=39.04 Aligned_cols=141 Identities=21% Similarity=0.353 Sum_probs=89.2
Q ss_pred CCEEEEeec--CCceEEeeCC--------CCcEEEcCCCCCCCCcceeEEEEEe--------------cCCceEEEcc-c
Q 035650 7 SKAVKLRSH--LDKYLVADDD--------QERVRQSRNGASSGKKATWIVELVE--------------NKGNVIRLRS-C 61 (211)
Q Consensus 7 ~~~VRLRS~--~gkYL~ADeD--------G~~Vs~~~~~~~s~~~a~W~Ve~~~--------------~~~~~v~LqS-a 61 (211)
|..|.||++ -|.|||.-.. +.-|++=.+..+ | ..|.+|+.+ .++..|+|+= .
T Consensus 317 GS~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y~~~D~--N-N~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~ 393 (723)
T KOG3359|consen 317 GSTITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGYPHKDA--N-NEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKM 393 (723)
T ss_pred ccEEEEEecCCcceeeecccccCCCCcCccceEEeecccCC--C-ceEEEecCCCCcccccCCcceeccCCcEEEEEecc
Confidence 367899998 4689997543 234666666553 5 889999211 2346888877 8
Q ss_pred CCCccccCCCCCCCCCCcceEEeecCCc-cCCCCceeeEEEe--c-----C-------CEEEEecc-CCceeeeCCCC-C
Q 035650 62 YGKYLTASNIPFLLGMTGNKVVQAVPEE-KNMDWIFQWEPIR--D-----G-------FQIKLKSW-CGKFLRANGGT-P 124 (211)
Q Consensus 62 yGRYL~as~~~~~lG~~G~~v~Q~~~~~-~~d~~~i~Wepir--~-----g-------~~V~Lr~~-~gr~LRANG~~-~ 124 (211)
-||+|.+.+.++|.--.-..|.=-..+. .-| ..=.|+..- . + ..++|.|. -|+||-..|+. |
T Consensus 394 T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd-~~d~w~veIv~~~~~~~~~~i~tl~t~fRl~h~~t~c~L~ss~~~LP 472 (723)
T KOG3359|consen 394 TGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGD-ANDLWRVEIVKKKPNEDQERIKTLTTEFRLIHVLTGCYLKSSGKKLP 472 (723)
T ss_pred cCcccccCCCCCCCCCCceEEEEEeccccccC-ccccEEEEEecCCCCCCCceEEEeeeEEEEEEcccceEEccCCCcCC
Confidence 9999999999988765434443222222 112 334566531 1 1 25788886 58999999874 5
Q ss_pred CCC---ceeEeeCCCCCCccceEEEEEEEecCC
Q 035650 125 PWR---NSLTHDEPHTGSTKNWILWDVESVELP 154 (211)
Q Consensus 125 pWr---n~VTvD~~~~~~~~~~m~W~VE~Vp~~ 154 (211)
-|- --|+.+...+ ..-..|-||.+.-.
T Consensus 473 ~WGf~Q~EV~c~~~~~---~~~T~WnVEe~~n~ 502 (723)
T KOG3359|consen 473 EWGFEQQEVVCAKNPR---DKSTTWNVEEHENP 502 (723)
T ss_pred cccccceEEecccCCc---CCCceEEEecccCC
Confidence 587 4666664311 12246999988655
No 20
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=90.68 E-value=1.5 Score=36.57 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=55.9
Q ss_pred eEEEcccCCCccccCCCCCCCCCCcceEEeecCCccCCCCceeeEEEec-CCEEEEecc-CCceeeeCCCCCCCCceeEe
Q 035650 55 VIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIRD-GFQIKLKSW-CGKFLRANGGTPPWRNSLTH 132 (211)
Q Consensus 55 ~v~LqSayGRYL~as~~~~~lG~~G~~v~Q~~~~~~~d~~~i~Wepir~-g~~V~Lr~~-~gr~LRANG~~~pWrn~VTv 132 (211)
+|.+||-.|+||.+-... |..-.|.+.+...+ +.+--+.... .+.|.+|+. .|+|.|++ +-|=.+ ..
T Consensus 7 ~V~FKg~n~kYLry~~~~------~~~~lqf~~ddI~d-p~v~~ev~~~~dg~V~ik~~~~nKfWr~s---~~WI~a-~s 75 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQ------QYGLLQFSADKILD-PLVQFEVFPTYNGLVHIKSNYTNKFWRLS---HYWITA-DA 75 (139)
T ss_pred EEEEEcCCCceEEEEeec------ccceeEecccccCC-cceeEEEEEcCCCcEEEEecCCCceEccC---CCEEEe-cC
Confidence 899999999999875532 45567877776655 6666665543 348888886 48999998 446322 22
Q ss_pred eCCCCCCccceEEEEEE
Q 035650 133 DEPHTGSTKNWILWDVE 149 (211)
Q Consensus 133 D~~~~~~~~~~m~W~VE 149 (211)
|.+.....+.++.|.|-
T Consensus 76 ~d~~e~~sscTLF~Pv~ 92 (139)
T smart00791 76 NDPDENKSACTLFRPLY 92 (139)
T ss_pred CCCccCCCcccEEeEEe
Confidence 33422233677888776
No 21
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=90.39 E-value=1.7 Score=34.72 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=48.8
Q ss_pred CCCEEEEeec-CCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cC--CCccccCCCC
Q 035650 6 KSKAVKLRSH-LDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CY--GKYLTASNIP 72 (211)
Q Consensus 6 d~~~VRLRS~-~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ay--GRYL~as~~~ 72 (211)
+...|+||+- .++||+-|++|+ ++-+. .. ..+ +.|.-+..+ .++-...| .| +-||+-...-
T Consensus 38 ~~g~v~i~~v~s~~YLCmn~~G~-ly~s~-~~-~~d-C~F~E~~~~--n~Y~~y~S~~~~~~~ylal~~~G 102 (123)
T cd00058 38 AVGVVSIKGVASCRYLCMNKCGK-LYGSK-GF-TEE-CLFREELLE--NNYNTYASAKYRRRWYLALNKKG 102 (123)
T ss_pred CCCEEEEEEcccceEEEECCCCC-EEECC-CC-CCC-CEEEEEEcc--CCcEEEEEcccCCCcEEEECCCC
Confidence 3568999998 899999999999 77766 55 667 999988754 67888999 45 7899886553
No 22
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=89.03 E-value=1.3 Score=29.74 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=29.6
Q ss_pred CCCCEEEEeec-CCceEEeeCCC--------CcEEEcCCCCCCCCcceeEEEE
Q 035650 5 AKSKAVKLRSH-LDKYLVADDDQ--------ERVRQSRNGASSGKKATWIVEL 48 (211)
Q Consensus 5 ~d~~~VRLRS~-~gkYL~ADeDG--------~~Vs~~~~~~~s~~~a~W~Ve~ 48 (211)
..+..||||.- .|+||++.+.- .-|+|..+..-..+ ..|.||.
T Consensus 5 ~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~-~~W~ie~ 56 (57)
T smart00472 5 RWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDAN-TLWLIEP 56 (57)
T ss_pred ccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCC-CcEEEEe
Confidence 45779999976 79999986554 25777654320234 7899985
No 23
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=87.90 E-value=3.4 Score=30.82 Aligned_cols=74 Identities=24% Similarity=0.264 Sum_probs=53.8
Q ss_pred CCEEEEeec-CCceEEeeCC----CCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCCCCCCCCcc
Q 035650 7 SKAVKLRSH-LDKYLVADDD----QERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIPFLLGMTGN 80 (211)
Q Consensus 7 ~~~VRLRS~-~gkYL~ADeD----G~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~~~lG~~G~ 80 (211)
.....|++. -|+||-++.. |..|.+..... ..+ ..|.|+... +++..|++ ..|++|...+.... .|.
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~-~~~-Q~W~i~~~~--~g~y~I~n~~s~~~Ldv~~~~~~---~g~ 86 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNG-NDN-QQWKIEPVG--DGYYRIRNKNSGKVLDVAGGSTA---NGT 86 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSS-SGG-GEEEEEEST--TSEEEEEETSTTEEEEEGGGSSS---TTE
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCC-CcC-cEEEEEEec--CCeEEEEECCCCcEEEECCCCCC---CCC
Confidence 457899997 7999999864 55677765433 345 899999853 56889999 68999988765422 367
Q ss_pred eEEeecC
Q 035650 81 KVVQAVP 87 (211)
Q Consensus 81 ~v~Q~~~ 87 (211)
.|.|-.+
T Consensus 87 ~v~~~~~ 93 (105)
T PF14200_consen 87 NVQQWEY 93 (105)
T ss_dssp BEEEEE-
T ss_pred EEEEEeC
Confidence 7888776
No 24
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=84.98 E-value=3.1 Score=33.35 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=45.2
Q ss_pred CEEEEeec-CCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCC--CccccCCC
Q 035650 8 KAVKLRSH-LDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYG--KYLTASNI 71 (211)
Q Consensus 8 ~~VRLRS~-~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayG--RYL~as~~ 71 (211)
..|+||+- .++||+-|++|+ ++-... . +.+ +.|.-+..+ .++-.+.| .|. -||+-+..
T Consensus 44 g~V~ik~~~s~~YLCmn~~G~-ly~s~~-~-~~d-C~F~E~~~~--n~y~~y~S~~~~~~~ylal~~~ 105 (126)
T smart00442 44 GVVAIKGVASCRYLCMNKCGK-LYGSKN-F-TED-CVFREEMEE--NGYNTYASAKYRKRWYVALNKK 105 (126)
T ss_pred CEEEEEEcccceEEEECCCCC-EEEccc-C-CCC-cEEEEEecc--CCeEEEEEcccCCceEEEECCC
Confidence 57899998 899999999999 666654 5 667 999877654 67888888 566 58877554
No 25
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.51 E-value=17 Score=37.57 Aligned_cols=101 Identities=22% Similarity=0.228 Sum_probs=62.0
Q ss_pred ceEEEcc--cCCCccccCCCCCCCCC-CcceEEeecC-Cc-----------cCC-CCceeeEEEecCCEEEEecc-CCce
Q 035650 54 NVIRLRS--CYGKYLTASNIPFLLGM-TGNKVVQAVP-EE-----------KNM-DWIFQWEPIRDGFQIKLKSW-CGKF 116 (211)
Q Consensus 54 ~~v~LqS--ayGRYL~as~~~~~lG~-~G~~v~Q~~~-~~-----------~~d-~~~i~Wepir~g~~V~Lr~~-~gr~ 116 (211)
-.|.|++ .-|-||+......|.|. .+..|+-=.. |+ +.+ ...-.=++++.|+.|+|+|. .||+
T Consensus 318 S~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y~~~D~NN~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~T~r~ 397 (723)
T KOG3359|consen 318 STITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGYPHKDANNEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKMTGRN 397 (723)
T ss_pred cEEEEEecCCcceeeecccccCCCCcCccceEEeecccCCCceEEEecCCCCcccccCCcceeccCCcEEEEEecccCcc
Confidence 6777777 58999999999999993 3333321111 10 000 01222356778999999997 5999
Q ss_pred eeeCCCCCCCCce---eEeeCCCCCCccceEEEEEEEecCC
Q 035650 117 LRANGGTPPWRNS---LTHDEPHTGSTKNWILWDVESVELP 154 (211)
Q Consensus 117 LRANG~~~pWrn~---VTvD~~~~~~~~~~m~W~VE~Vp~~ 154 (211)
|++-.-.+|-... ||-=......-..--+|.||.+.=.
T Consensus 398 LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~ 438 (723)
T KOG3359|consen 398 LHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKK 438 (723)
T ss_pred cccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCC
Confidence 9999877776533 3331111100112257999999766
No 26
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.99 E-value=6.4 Score=40.37 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=55.7
Q ss_pred CCCCCCCCEEEEeec-CCceEEeeCCCC-------cEEEcC--CCCCCCCcceeEEEEEec---C--------CceEEEc
Q 035650 1 MEVFAKSKAVKLRSH-LDKYLVADDDQE-------RVRQSR--NGASSGKKATWIVELVEN---K--------GNVIRLR 59 (211)
Q Consensus 1 ME~F~d~~~VRLRS~-~gkYL~ADeDG~-------~Vs~~~--~~~~s~~~a~W~Ve~~~~---~--------~~~v~Lq 59 (211)
+|.-.||+.||||=+ +||+||+-+--. -|+|-. ... ..+ -.|.||++.. . ....||+
T Consensus 360 ~~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~g-d~~-d~w~i~i~~~~~~~~~~~i~pl~t~fRl~ 437 (699)
T COG1928 360 IEPLKDGQSVRLRHKYTGKNLHFHDVKPPVSGNQYEVSGYGDSFEG-DEK-DDWIIEIVKDEANEDQERIHPLETKFRLY 437 (699)
T ss_pred ceeccCCcEEEEEEeeccceeecCCCCCCCCCCceeeeeccccccC-Ccc-cceeeEeeeccCCCccceeeecccceeee
Confidence 456678999999988 999999976532 244432 112 234 6799998852 1 2467888
Q ss_pred c-cCCCccccCCCCCC-CCCCcceEE
Q 035650 60 S-CYGKYLTASNIPFL-LGMTGNKVV 83 (211)
Q Consensus 60 S-ayGRYL~as~~~~~-lG~~G~~v~ 83 (211)
. --|.||..++...| +|.....|+
T Consensus 438 h~~~~cyL~s~~~~lP~Wgf~q~EV~ 463 (699)
T COG1928 438 HVLTGCYLASHDLKLPEWGFSQREVL 463 (699)
T ss_pred ecccceeeccCCCCCCCcccccceeE
Confidence 7 68999999988754 566555553
No 27
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=77.35 E-value=7.3 Score=32.35 Aligned_cols=88 Identities=26% Similarity=0.398 Sum_probs=51.0
Q ss_pred CCCcceeEEEEEe-----c----CCceEEEcc-cCCCccccCCCCCCCCCC---cceEEeecCC----ccCCCC-ceeeE
Q 035650 38 SGKKATWIVELVE-----N----KGNVIRLRS-CYGKYLTASNIPFLLGMT---GNKVVQAVPE----EKNMDW-IFQWE 99 (211)
Q Consensus 38 s~~~a~W~Ve~~~-----~----~~~~v~LqS-ayGRYL~as~~~~~lG~~---G~~v~Q~~~~----~~~d~~-~i~We 99 (211)
+.+ +-|.||.+. + -+..|||+- .-|+||.+.+..+|.--+ -..+..-... ...| . --.|+
T Consensus 45 ~~~-slW~IE~~~~~~~~g~~v~~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d-~~~~i~~ 122 (190)
T PF02815_consen 45 SAN-SLWQIEPVSEDPWSGGPVKWGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDAND-DKVEIFE 122 (190)
T ss_dssp SGG-GEEEEEE-TSSTTTTSB-BTTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SS-G-GGEEE
T ss_pred ccc-cceEEecCCCCcccCCcccCCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCccc-cceeEEE
Confidence 344 789999843 1 146899999 999999999888665433 2233221111 1112 1 11122
Q ss_pred EEe----------c-CCEEEEecc-CCceeeeCCC-CCCCC
Q 035650 100 PIR----------D-GFQIKLKSW-CGKFLRANGG-TPPWR 127 (211)
Q Consensus 100 pir----------~-g~~V~Lr~~-~gr~LRANG~-~~pWr 127 (211)
... . +..++|+|. .|.||-+... +|-|-
T Consensus 123 ~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~lp~wg 163 (190)
T PF02815_consen 123 EKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVKLPEWG 163 (190)
T ss_dssp EEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEES-TTT
T ss_pred ecccCCccCCcEEecccEEEEEECCcCEEEecCCccccccc
Confidence 211 1 358999996 7999988864 56676
No 28
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.68 E-value=12 Score=38.52 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=67.1
Q ss_pred ceEEEcc--cCCCccccCCCCCCCCCCcceEEeecCCccCCCCceee------------EEEecCCEEEEecc-CCceee
Q 035650 54 NVIRLRS--CYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQW------------EPIRDGFQIKLKSW-CGKFLR 118 (211)
Q Consensus 54 ~~v~LqS--ayGRYL~as~~~~~lG~~G~~v~Q~~~~~~~d~~~i~W------------epir~g~~V~Lr~~-~gr~LR 118 (211)
..|-+|. .-|-||+......|.|--+..|+- |..+ | .+-+| +++.+|..|+|+|. .|++|+
T Consensus 306 S~itirh~~t~g~~LHSh~~~YP~gs~qqqvt~--y~~~-d-~NN~W~~e~~~~~~~~~~~l~~G~~vrL~H~~T~~~Lh 381 (699)
T COG1928 306 STITIRHAGTGGGYLHSHNQLYPEGSEQQQVTG--YGHK-D-ANNEWLIELSDENATQIEPLKDGQSVRLRHKYTGKNLH 381 (699)
T ss_pred eEEEEeccCCccchhhcccCCCCCCcccceeec--cccc-c-cccceeeeecccccccceeccCCcEEEEEEeeccceee
Confidence 5566666 477899998888888755555532 2222 2 23344 46677899999997 599999
Q ss_pred eCCCCCCCCce---eEe--eCCCCCCccceEEEEEEEecCCCCCCccccccccccc
Q 035650 119 ANGGTPPWRNS---LTH--DEPHTGSTKNWILWDVESVELPETGSFLEYLSSVSSF 169 (211)
Q Consensus 119 ANG~~~pWrn~---VTv--D~~~~~~~~~~m~W~VE~Vp~~~~~~~~~~~~~~s~~ 169 (211)
+-+..+|-... |+- |..... .-=.|.||.+.-...+.....-.-.|+|
T Consensus 382 ~H~~~~pvS~~~~EvS~yg~~~~gd---~~d~w~i~i~~~~~~~~~~~i~pl~t~f 434 (699)
T COG1928 382 FHDVKPPVSGNQYEVSGYGDSFEGD---EKDDWIIEIVKDEANEDQERIHPLETKF 434 (699)
T ss_pred cCCCCCCCCCCceeeeeccccccCC---cccceeeEeeeccCCCccceeeecccce
Confidence 99988876533 221 211111 1125999999876444443223444566
No 29
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=71.64 E-value=11 Score=31.80 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=45.4
Q ss_pred ecC-CceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCCCCCC
Q 035650 14 SHL-DKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIPFLLG 76 (211)
Q Consensus 14 S~~-gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~~~lG 76 (211)
++- |.+|-+..||+ |.-.++.. +.. +...+..+. -+.|.+|+ .-++||+=..+-.+-|
T Consensus 32 ~~t~g~hLqi~p~g~-V~Gt~~~~-s~~-siLei~sv~--~GvV~IkGV~s~~YL~Mn~~G~Lyg 91 (155)
T KOG3885|consen 32 CRNGGHFLRILPDGT-VDGTRDRS-DQH-TIFEIITVA--VGVVAIKGVESELYLAMNKEGKLYA 91 (155)
T ss_pred EcCCCEEEEEcCCCc-cccccccC-CCc-eeEEEEEee--ecEEEEEEeeceeEEEECCCCcEec
Confidence 555 89999999998 77777777 777 777776654 57999999 8999999877654444
No 30
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=59.09 E-value=1.2e+02 Score=26.88 Aligned_cols=111 Identities=25% Similarity=0.357 Sum_probs=68.1
Q ss_pred CCEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEec-----C-----CceEEEcc-cCCCccccCCCCCCC
Q 035650 7 SKAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVEN-----K-----GNVIRLRS-CYGKYLTASNIPFLL 75 (211)
Q Consensus 7 ~~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~-----~-----~~~v~LqS-ayGRYL~as~~~~~l 75 (211)
.+.+||-||==||=...-- .+|+--.... -.| .-|.|..+.+ | +..|||+= --|+.|...--..|+
T Consensus 38 ~~~~RLHSHDVkYGSgSGQ-QSVTgv~~~d-D~N-SyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPl 114 (211)
T KOG3358|consen 38 KHKFRLHSHDVKYGSGSGQ-QSVTGVEGVD-DSN-SYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPL 114 (211)
T ss_pred ccceeeeccccCccCCCCc-ceeecccccc-cCc-ceEEEecCCCCcccCCCccccCCeEEEEEeecccchhhcccCCCC
Confidence 3457777775566322211 1343322222 335 8899998762 1 36899998 899999887666665
Q ss_pred CCCcceEEeecCCccCCCCceeeEEEecCC------EEEEecc-CCceeeeCCC
Q 035650 76 GMTGNKVVQAVPEEKNMDWIFQWEPIRDGF------QIKLKSW-CGKFLRANGG 122 (211)
Q Consensus 76 G~~G~~v~Q~~~~~~~d~~~i~Wepir~g~------~V~Lr~~-~gr~LRANG~ 122 (211)
- |+.-+-+--++.+-+..=.|..|..|. .|+|+|. .+-||--.|.
T Consensus 115 S--gnqEVSafG~dgegDtgD~Wtvic~g~~W~r~~~vrl~Hi~T~~yLs~sg~ 166 (211)
T KOG3358|consen 115 S--GNQEVSAFGEDGEGDTGDHWTVICNGKTWKRDARVRLQHIDTSVYLSVSGE 166 (211)
T ss_pred C--CCeeEEeecccCCCCcccceEEEeCCccccccceEEEEEeccceeEEeccc
Confidence 4 444333332222221455699998764 7999996 4789887775
No 31
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=59.05 E-value=10 Score=42.16 Aligned_cols=68 Identities=29% Similarity=0.459 Sum_probs=47.5
Q ss_pred CCCCCEEEEeec-CCceEEeeCCCC--cEEEcC------CCCCCCCcceeEEEEEe-----cCCce----EEEcc-cCCC
Q 035650 4 FAKSKAVKLRSH-LDKYLVADDDQE--RVRQSR------NGASSGKKATWIVELVE-----NKGNV----IRLRS-CYGK 64 (211)
Q Consensus 4 F~d~~~VRLRS~-~gkYL~ADeDG~--~Vs~~~------~~~~s~~~a~W~Ve~~~-----~~~~~----v~LqS-ayGR 64 (211)
..+|..|||=-- ..|||.-||=.+ -|.++. ..+.|.+ |-|.||.+. ||.++ .|+|- |-|-
T Consensus 241 lKgGDVVRLFHAeQekFLT~Dey~kq~hVFLRtT~RqSAtsATSSk-ALWEveVVqhd~cRGGag~WNslyRFKHLATg~ 319 (2706)
T KOG3533|consen 241 LKGGDVVRLFHAEQEKFLTCDEYPKQNHVFLRTTNRQSATSATSSK-ALWEVEVVQHDPCRGGAGKWNSLYRFKHLATGM 319 (2706)
T ss_pred hccCcEEEeecccccceeehhcccccceEEEeccCCcccccccccc-cceeEEEEecCCCCCcccchhhhhhhhhhcccc
Confidence 346778888754 689999998754 455542 1111556 999999886 34444 57888 9999
Q ss_pred ccccCCCC
Q 035650 65 YLTASNIP 72 (211)
Q Consensus 65 YL~as~~~ 72 (211)
||+|-..+
T Consensus 320 YLaAE~~~ 327 (2706)
T KOG3533|consen 320 YLAAEPSP 327 (2706)
T ss_pred eeecCCCc
Confidence 99997655
No 32
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=52.54 E-value=39 Score=28.52 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=47.2
Q ss_pred CEEEEeec-CCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCC----CccccCCCCCC
Q 035650 8 KAVKLRSH-LDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYG----KYLTASNIPFL 74 (211)
Q Consensus 8 ~~VRLRS~-~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayG----RYL~as~~~~~ 74 (211)
..|.+|.- -+.||+-|++|+ .+-+ ..- +.+ ++|.=...+ .+|-..+| .|. -|++-+....|
T Consensus 68 GvV~IkGV~s~~YL~Mn~~G~-LygS-~~~-t~e-C~F~E~~~E--N~YntY~S~~y~~~~~~yvaL~k~G~p 134 (155)
T KOG3885|consen 68 GVVAIKGVESELYLAMNKEGK-LYAS-KEF-TEE-CKFKELVLE--NYYNTYASAKYRHNGEWFVALNKKGIP 134 (155)
T ss_pred cEEEEEEeeceeEEEECCCCc-EecC-CCC-Ccc-ceeEEEeec--CCchheeehhhcccccEEEEECCCCCC
Confidence 48999987 899999999999 5555 444 557 888766554 78999999 688 78887776644
No 33
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=49.23 E-value=59 Score=27.57 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=48.1
Q ss_pred ceEEEcccCCCccccCCCCCCCCCCcceEEeecCCccCCCCceeeEEEe--c-CCEEEEecc-CCceeeeCCCCCCCCce
Q 035650 54 NVIRLRSCYGKYLTASNIPFLLGMTGNKVVQAVPEEKNMDWIFQWEPIR--D-GFQIKLKSW-CGKFLRANGGTPPWRNS 129 (211)
Q Consensus 54 ~~v~LqSayGRYL~as~~~~~lG~~G~~v~Q~~~~~~~d~~~i~Wepir--~-g~~V~Lr~~-~gr~LRANG~~~pWrn~ 129 (211)
.+|.+++-.|+||.+-.+. -.+..-.|..-+...+ +.+--+.+. . .+.|.+|+. .|||.|.+....-|=-+
T Consensus 6 ~~V~fkg~N~kYLry~~e~----~~~~~~LqF~~edi~d-P~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n~~WI~a 80 (153)
T PF07468_consen 6 YYVAFKGDNGKYLRYRTED----IQQYGYLQFSGEDIGD-PYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPNDYWIWA 80 (153)
T ss_dssp CCEEEETTTS-EEEEEESS----CTTCCEEEEEESSTT--CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC--BEEE
T ss_pred EEEEEEcCCCcEEEEEecc----cccceeEEecCCcCCC-CceeEEEEEcccCCCeEEEEeccCCceeEeCCCCCcEEEe
Confidence 3677888899999875522 1123456776666655 666666655 2 348888886 48999986433335333
Q ss_pred eEeeCCC--CCCccceEEEEE
Q 035650 130 LTHDEPH--TGSTKNWILWDV 148 (211)
Q Consensus 130 VTvD~~~--~~~~~~~m~W~V 148 (211)
.+- .+. .+....++.|.|
T Consensus 81 da~-~p~ed~s~~~cTLF~Pv 100 (153)
T PF07468_consen 81 DAD-DPDEDQSKPSCTLFEPV 100 (153)
T ss_dssp EES-SHHH-TCSTCGG-EEEE
T ss_pred cCC-CcccccCCCCceEEEEE
Confidence 322 221 233456777554
No 34
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=48.82 E-value=30 Score=28.63 Aligned_cols=63 Identities=27% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCCCEEEEeec--CCceEEeeCCCCcEEEcCCCCCC----CCcceeEEEEEecCCceEEEcc--cCCCccccCCC
Q 035650 5 AKSKAVKLRSH--LDKYLVADDDQERVRQSRNGASS----GKKATWIVELVENKGNVIRLRS--CYGKYLTASNI 71 (211)
Q Consensus 5 ~d~~~VRLRS~--~gkYL~ADeDG~~Vs~~~~~~~s----~~~a~W~Ve~~~~~~~~v~LqS--ayGRYL~as~~ 71 (211)
.+...|-|.|. =|.||.. .+++ |.++++.. + .+ |-|..+.-..+.+.+.|+| --|+||...+.
T Consensus 48 a~~~~vSfES~~~PG~yLrh-~~~~-v~l~~~d~-s~~F~~d-ATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~~ 118 (142)
T PF05270_consen 48 ADSSCVSFESVNYPGYYLRH-SNFR-VRLEKNDG-SALFRED-ATFCPRPGLAGPGYVSFESYNYPGRYLRHYNG 118 (142)
T ss_dssp S-TTCEEEEESSSTTEEEEE-ETTE-EEEEE--S-SHHHHHH-T-EEEEE-SSSTTEEEEEESSSTTEEEEEETT
T ss_pred CCCCEEEEEECCCCCcEEEE-ECCE-EEEeecCC-CccccCC-ceEEEecCCCCCCcceEEEecCCCeEEEEECC
Confidence 35668999987 4999976 5665 88877554 3 34 8898876434578999999 48999986553
No 35
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=45.53 E-value=72 Score=26.61 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=43.0
Q ss_pred CCCCCEEEEeec-CCceEEeeCCCCcEEEc-CCCCCCCCcceeEEEEEecCCceEEEcc-cCCCccccCCCCC
Q 035650 4 FAKSKAVKLRSH-LDKYLVADDDQERVRQS-RNGASSGKKATWIVELVENKGNVIRLRS-CYGKYLTASNIPF 73 (211)
Q Consensus 4 F~d~~~VRLRS~-~gkYL~ADeDG~~Vs~~-~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL~as~~~~ 73 (211)
|++..+|.+++- -|+=|.|+++|. +... .+.. ... ..|.+... ..+-|.+|| +-|+=|.....+.
T Consensus 48 ~~~~g~Vqf~n~~~~~CL~~~~~G~-~~~~~C~~~-~~~-q~F~iiPt--ttgAVQIks~~~~~Cl~~~~~~~ 115 (150)
T PF03498_consen 48 FFPFGYVQFVNPKTGTCLAAYGNGV-FHYKSCDQD-NLE-QVFSIIPT--TTGAVQIKSLSTGECLQTFNNSR 115 (150)
T ss_dssp -STTCEEEEEETTTSEEEEEETTCE-EEE--TTTC-HGH-H-EEEEEB--TTS-EEEEETTT--EEEE-STTS
T ss_pred cCCCCEEEEEcCCCCcceeecCCCe-EeecccCCC-Chh-ceEEEEEc--CCCcEEEEecCCCceEEecCCCc
Confidence 445679999998 788999999986 4422 2333 335 88988764 478999999 8888888766653
No 36
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=44.73 E-value=19 Score=32.60 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=38.1
Q ss_pred CEEEEeecCCceEEeeCCCCcEEEcCCCCCCCCcceeEEEEEecCCceEEEcc-cCCCcc
Q 035650 8 KAVKLRSHLDKYLVADDDQERVRQSRNGASSGKKATWIVELVENKGNVIRLRS-CYGKYL 66 (211)
Q Consensus 8 ~~VRLRS~~gkYL~ADeDG~~Vs~~~~~~~s~~~a~W~Ve~~~~~~~~v~LqS-ayGRYL 66 (211)
.-|-|+|.+||||--+.||- |.+..+.- ... ..|....+. ....+|.| ..=+|+
T Consensus 94 srIaLKsGyGKYlsinsdgl-vvg~qeAv-G~~-EQw~~vFq~--~r~a~~as~s~~~~~ 148 (246)
T KOG3962|consen 94 SRIALKSGYGKYLSINSDGL-VVGRQEAV-GSR-EQWEPVFQE--GRMALLASNSCFIRC 148 (246)
T ss_pred ceEEecccccceeeecCCcc-EEEehhhc-CcH-hhchhhhhc--cceEEeeccceeEEe
Confidence 57889999999999999998 77766543 445 568766653 45566655 444555
No 37
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=42.83 E-value=26 Score=29.05 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=41.0
Q ss_pred CCCEEEEeec-CCceEEeeCCC----------CcEEEcCCCCC--C-CCcc-eeEEEEEec----------CCceEEEcc
Q 035650 6 KSKAVKLRSH-LDKYLVADDDQ----------ERVRQSRNGAS--S-GKKA-TWIVELVEN----------KGNVIRLRS 60 (211)
Q Consensus 6 d~~~VRLRS~-~gkYL~ADeDG----------~~Vs~~~~~~~--s-~~~a-~W~Ve~~~~----------~~~~v~LqS 60 (211)
-+..||||-- -|+||++.++. ..|++-..... . .+ . ...++.... .+.+++|+-
T Consensus 67 ~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d-~~~~i~~~~~~~~~~~~~~~~~~s~frL~H 145 (190)
T PF02815_consen 67 WGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDAND-DKVEIFEEKSSTGMGEDEIKTLDSYFRLRH 145 (190)
T ss_dssp TTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SS-G-GGEEEEEESSSCSSSSBBBTTSEEEEEE
T ss_pred CCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCccc-cceeEEEecccCCccCCcEEecccEEEEEE
Confidence 3679999987 89999998754 23444221110 1 22 2 222222221 246999999
Q ss_pred -cCCCccccCCCCC
Q 035650 61 -CYGKYLTASNIPF 73 (211)
Q Consensus 61 -ayGRYL~as~~~~ 73 (211)
+.|.||.+.+...
T Consensus 146 ~~t~~~L~~~~~~l 159 (190)
T PF02815_consen 146 VATGCWLHSHDVKL 159 (190)
T ss_dssp TTTTEEEEEEEEES
T ss_pred CCcCEEEecCCccc
Confidence 8999999987764
No 38
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=38.43 E-value=45 Score=28.47 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=23.9
Q ss_pred eeEeeCCCCCCccceEEEEEEEecCCCCCCccc
Q 035650 129 SLTHDEPHTGSTKNWILWDVESVELPETGSFLE 161 (211)
Q Consensus 129 ~VTvD~~~~~~~~~~m~W~VE~Vp~~~~~~~~~ 161 (211)
.+++|+|+...-..|+||.|--||........+
T Consensus 64 AL~v~DpDAP~g~~~~HWvv~nIp~~~~~~~~~ 96 (174)
T COG1881 64 ALTVDDPDAPTGGGWVHWVVANIPADVTELPEG 96 (174)
T ss_pred EEEEECCCCCCCCcEEEEEEEccCCcccccccc
Confidence 467777766556799999999999855444433
No 39
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=32.57 E-value=82 Score=27.09 Aligned_cols=79 Identities=23% Similarity=0.234 Sum_probs=48.2
Q ss_pred CCCEEEEeec-CCceEEeeCCC--------CcEEEcCCCCCCCCcceeEEEEEe----cC-----CceEEEcc-cCCCcc
Q 035650 6 KSKAVKLRSH-LDKYLVADDDQ--------ERVRQSRNGASSGKKATWIVELVE----NK-----GNVIRLRS-CYGKYL 66 (211)
Q Consensus 6 d~~~VRLRS~-~gkYL~ADeDG--------~~Vs~~~~~~~s~~~a~W~Ve~~~----~~-----~~~v~LqS-ayGRYL 66 (211)
-|+.|.|+=- -+|||....+. -.|.++.... ..+ +.|+|++.- .| ++.|.|.+ +.++||
T Consensus 100 YGq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~~~-~e~-s~F~i~P~~k~r~~Gd~V~~gD~i~l~~~~~~~~L 177 (214)
T PF08709_consen 100 YGQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEFSS-GEN-SWFRIHPAYKQRSEGDPVRYGDQIILISVSTEQYL 177 (214)
T ss_dssp TTEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESSSS-SGG-GEEEEEESSTTS-TTSB-BTT-EEEEEETTT-SEE
T ss_pred ecceEEEeEeCccEEEEEeCCCCCcccccceEEEeccCCC-ccc-EEEEEEcchheEcCCCeeeeCCEEEEEECCCCCcc
Confidence 3678888854 79999877654 2688876544 245 889998642 12 46788888 899999
Q ss_pred ccCCCCCCCCCCcceEEeec
Q 035650 67 TASNIPFLLGMTGNKVVQAV 86 (211)
Q Consensus 67 ~as~~~~~lG~~G~~v~Q~~ 86 (211)
..+.........+.+.++..
T Consensus 178 h~s~~~~~~~~~~~~eVn~~ 197 (214)
T PF08709_consen 178 HVSSNKSLSDNKGCKEVNAS 197 (214)
T ss_dssp EEEEEEEESSSSSCEEEEES
T ss_pred cccCccccccCCCceEEEEE
Confidence 95422112222333555544
No 40
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=22.94 E-value=2.8e+02 Score=19.49 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=57.0
Q ss_pred EEeec--CCceEEeeCC--CCcEEEcCCCCCC-CCcceeEEEEEecCCceEEEcccCCCccccCCCCCCCCCCcceEEee
Q 035650 11 KLRSH--LDKYLVADDD--QERVRQSRNGASS-GKKATWIVELVENKGNVIRLRSCYGKYLTASNIPFLLGMTGNKVVQA 85 (211)
Q Consensus 11 RLRS~--~gkYL~ADeD--G~~Vs~~~~~~~s-~~~a~W~Ve~~~~~~~~v~LqSayGRYL~as~~~~~lG~~G~~v~Q~ 85 (211)
+|++. -|+.|.+... |..|.+..-.. . .+ -.|.+.. .+.+++++ .++.|.+.... .|..+.+.
T Consensus 2 ~~~~~~~~~~cL~~~~~~~~~~v~~~~c~~-~~~~-Q~W~~~~----~g~~~~~~-~~~Cl~~~~~~-----~~~~~~~~ 69 (124)
T cd00161 2 TIRNVNNTGLCLDVNGGSDGGPVQLYPCHG-NGNN-QKWTLTS----DGTIRIKS-SNLCLDVGGDA-----PGSKVRLY 69 (124)
T ss_pred eeEeCCCCCeEEECCCCCCCCEEEEEECCC-CCcc-CCEEEeC----CCeEEEcC-CCeEEcccCCC-----CCCEEEEE
Confidence 34554 4788887773 56677654322 2 35 7898874 47888887 78888875543 34566665
Q ss_pred cCCccCCCCceeeEEEecCCEEEEeccCCceeeeCCC
Q 035650 86 VPEEKNMDWIFQWEPIRDGFQIKLKSWCGKFLRANGG 122 (211)
Q Consensus 86 ~~~~~~d~~~i~Wepir~g~~V~Lr~~~gr~LRANG~ 122 (211)
..+.. . ..-.|+.... ..++.+. .+..|-..+.
T Consensus 70 ~c~~~-~-~~Q~W~~~~~-~~i~~~~-~~~cl~~~~~ 102 (124)
T cd00161 70 TCSGG-S-DNQRWTFNKD-GTIRNLK-SGKCLDVKGG 102 (124)
T ss_pred ECCCC-C-cCCEEEECCC-cEEEECC-CCeEEeCCCC
Confidence 54431 2 4567877544 3333332 5677766544
Done!