AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>035652
IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPRIFLSLCQVIFFLSSDYVAHS
YCLNITTPELG
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with RPS10B RPS10B RPS10B AT5G41520	protein from Arabidopsis thaliana	1.6e-06
BLAST match view associations BLAST with AT5G52650 AT5G52650 AT5G52650	protein from Arabidopsis thaliana	2.1e-06
BLAST match view associations BLAST with AT4G25740 AT4G25740 AT4G25740	protein from Arabidopsis thaliana	2.1e-06
BLAST match view associations BLAST with rps10 rps10 rps10 ribosomal protein S10	gene_product from Danio rerio	0.00083
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035652
        (71 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2160452 - symbol:RPS10B "AT5G41520" species:37...   110  1.6e-06   1
TAIR|locus:2149579 - symbol:AT5G52650 species:3702 "Arabi...   109  2.1e-06   1
TAIR|locus:2117497 - symbol:AT4G25740 "AT4G25740" species...   109  2.1e-06   1
POMBASE|SPBP22H7.08 - symbol:rps1002 "40S ribosomal prote...    92  0.00013   1
POMBASE|SPAC31G5.17c - symbol:rps1001 "40S ribosomal prot...    88  0.00035   1
ZFIN|ZDB-GENE-040426-1481 - symbol:rps10 "ribosomal prote...    86  0.00083   1


>TAIR|locus:2160452 [details] [associations]
            symbol:RPS10B "AT5G41520" species:3702 "Arabidopsis
            thaliana" [GO:0003735 "structural constituent of ribosome"
            evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0022627
            "cytosolic small ribosomal subunit" evidence=ISS;IDA] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0010252 "auxin homeostasis"
            evidence=IGI] [GO:0090506 "axillary shoot meristem initiation"
            evidence=IGI] [GO:2000032 "regulation of secondary shoot formation"
            evidence=IGI] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            GO:GO:0009507 EMBL:AB005233 GO:GO:0090506 GO:GO:2000032
            GO:GO:0022627 GO:GO:0010252 InterPro:IPR005326 Pfam:PF03501
            eggNOG:COG5045 HOGENOM:HOG000216624 KO:K02947 EMBL:AY037240
            EMBL:AF375440 EMBL:AY060539 IPI:IPI00516966 RefSeq:NP_198967.1
            UniGene:At.67807 UniGene:At.8336 ProteinModelPortal:Q9FFS8
            SMR:Q9FFS8 IntAct:Q9FFS8 STRING:Q9FFS8 PaxDb:Q9FFS8 PRIDE:Q9FFS8
            EnsemblPlants:AT5G41520.1 GeneID:834154 KEGG:ath:AT5G41520
            GeneFarm:431 TAIR:At5g41520 InParanoid:Q9FFS8 OMA:ILYLREY
            PhylomeDB:Q9FFS8 ProtClustDB:CLSN2914905 Genevestigator:Q9FFS8
            GermOnline:AT5G41520 Uniprot:Q9FFS8
        Length = 180

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/25 (88%), Positives = 23/25 (92%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             I+FLR YLNLPSEIVPATLKKQ KP
Sbjct:    74 IDFLRTYLNLPSEIVPATLKKQQKP 98


>TAIR|locus:2149579 [details] [associations]
            symbol:AT5G52650 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0003735 "structural
            constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
            evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
            evidence=ISS;IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0016020 EMBL:AB025606
            GO:GO:0022627 InterPro:IPR005326 Pfam:PF03501 UniGene:At.28644
            eggNOG:COG5045 HOGENOM:HOG000216624 KO:K02947
            ProtClustDB:CLSN2916079 EMBL:AY065217 EMBL:AY088678 EMBL:AY122932
            IPI:IPI00526318 RefSeq:NP_200077.1 ProteinModelPortal:Q9LTF2
            SMR:Q9LTF2 IntAct:Q9LTF2 STRING:Q9LTF2 PaxDb:Q9LTF2 PRIDE:Q9LTF2
            EnsemblPlants:AT5G52650.1 GeneID:835342 KEGG:ath:AT5G52650
            GeneFarm:432 TAIR:At5g52650 InParanoid:Q9LTF2 OMA:HGDIDTK
            PhylomeDB:Q9LTF2 Genevestigator:Q9LTF2 GermOnline:AT5G52650
            Uniprot:Q9LTF2
        Length = 179

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             IEFLR YLNLPS++VPATLKK AKP
Sbjct:    73 IEFLRTYLNLPSDVVPATLKKSAKP 97


>TAIR|locus:2117497 [details] [associations]
            symbol:AT4G25740 "AT4G25740" species:3702 "Arabidopsis
            thaliana" [GO:0003735 "structural constituent of ribosome"
            evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0022627
            "cytosolic small ribosomal subunit" evidence=ISS;IDA] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009664
            "plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
            wall modification" evidence=RCA] EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0016020 EMBL:AL161563 EMBL:AL049480
            GO:GO:0022627 InterPro:IPR005326 Pfam:PF03501 EMBL:AY035172
            EMBL:AY113926 IPI:IPI00517911 PIR:T04228 RefSeq:NP_194304.1
            UniGene:At.22650 UniGene:At.28644 ProteinModelPortal:Q9SW09
            SMR:Q9SW09 IntAct:Q9SW09 STRING:Q9SW09 PaxDb:Q9SW09 PRIDE:Q9SW09
            EnsemblPlants:AT4G25740.1 GeneID:828679 KEGG:ath:AT4G25740
            GeneFarm:433 TAIR:At4g25740 eggNOG:COG5045 HOGENOM:HOG000216624
            InParanoid:Q9SW09 KO:K02947 OMA:WALLIRI PhylomeDB:Q9SW09
            ProtClustDB:CLSN2916079 Genevestigator:Q9SW09 Uniprot:Q9SW09
        Length = 177

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             IEFLR YLNLPS++VPATLKK AKP
Sbjct:    73 IEFLRTYLNLPSDVVPATLKKSAKP 97


>POMBASE|SPBP22H7.08 [details] [associations]
            symbol:rps1002 "40S ribosomal protein S10 (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0000054 "ribosomal
            subunit export from nucleus" evidence=ISO] [GO:0002181 "cytoplasmic
            translation" evidence=NAS] [GO:0003735 "structural constituent of
            ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006412 "translation" evidence=ISO] [GO:0022627 "cytosolic
            small ribosomal subunit" evidence=ISO] PomBase:SPBP22H7.08
            EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003735 GO:GO:0002181
            EMBL:AB004535 GO:GO:0022627 GO:GO:0000054 InterPro:IPR005326
            Pfam:PF03501 HOGENOM:HOG000216624 KO:K02947 OMA:HGDIDTK
            OrthoDB:EOG43JGFC RefSeq:NP_595605.1 IntAct:O13614 STRING:O13614
            PRIDE:O13614 EnsemblFungi:SPBP22H7.08.1 GeneID:3361259
            KEGG:spo:SPBP22H7.08 NextBio:20811357 Uniprot:O13614
        Length = 147

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 16/26 (61%), Positives = 23/26 (88%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKPA 26
             +E+LR YL+LP+E+VPAT K+Q +PA
Sbjct:    73 VEYLREYLHLPAEVVPATHKRQVRPA 98


>POMBASE|SPAC31G5.17c [details] [associations]
            symbol:rps1001 "40S ribosomal protein S10 (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0000054 "ribosomal
            subunit export from nucleus" evidence=ISO] [GO:0002181 "cytoplasmic
            translation" evidence=NAS] [GO:0003735 "structural constituent of
            ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006412 "translation" evidence=ISO] [GO:0022627 "cytosolic
            small ribosomal subunit" evidence=ISO] PomBase:SPAC31G5.17c
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181
            GO:GO:0022627 GO:GO:0000054 InterPro:IPR005326 Pfam:PF03501
            eggNOG:COG5045 HOGENOM:HOG000216624 KO:K02947 PIR:T38634
            RefSeq:NP_594018.1 STRING:O14112 PRIDE:O14112
            EnsemblFungi:SPAC31G5.17c.1 GeneID:2542561 KEGG:spo:SPAC31G5.17c
            OMA:VLIAHDC OrthoDB:EOG43JGFC NextBio:20803612 Uniprot:O14112
        Length = 144

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             +E+LR YL+LP+E+VPAT K+Q +P
Sbjct:    73 VEYLREYLHLPAEVVPATHKRQVRP 97


>ZFIN|ZDB-GENE-040426-1481 [details] [associations]
            symbol:rps10 "ribosomal protein S10" species:7955
            "Danio rerio" [GO:0005840 "ribosome" evidence=IEA]
            ZFIN:ZDB-GENE-040426-1481 GO:GO:0005840 InterPro:IPR005326
            Pfam:PF03501 eggNOG:COG5045 HOGENOM:HOG000216624 KO:K02947
            GeneTree:ENSGT00440000034918 OMA:VLIAHDC HOVERGEN:HBG001253
            CTD:6204 OrthoDB:EOG47SSFW EMBL:CU694224 EMBL:BC055098
            EMBL:BC067658 IPI:IPI00489853 RefSeq:NP_957440.1 UniGene:Dr.75584
            STRING:Q7T1J9 Ensembl:ENSDART00000045901 GeneID:394121
            KEGG:dre:394121 NextBio:20815074 Uniprot:Q7T1J9
        Length = 166

 Score = 86 (35.3 bits), Expect = 0.00084, P = 0.00083
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             I++LR +L+LP EIVPATL++Q +P
Sbjct:    76 IQYLRDFLHLPPEIVPATLRRQTRP 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.141   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       71        57   0.00091  102 3  11 22  0.43    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  464 (49 KB)
  Total size of DFA:  79 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.24u 0.16s 6.40t   Elapsed:  00:00:00
  Total cpu time:  6.24u 0.16s 6.40t   Elapsed:  00:00:00
  Start:  Fri May 10 02:12:15 2013   End:  Fri May 10 02:12:15 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
