BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035652
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10
PE=2 SV=2
Length = 183
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 32/53 (60%), Gaps = 13/53 (24%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPG------------GDRPRI 41
IE LR YLNLPSEIVPATLKK A+P GRPFG GDRPR
Sbjct: 73 IEHLRNYLNLPSEIVPATLKKSARPP-GRPFGSGPPGDRPRGPPRFEGDRPRF 124
>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2
SV=1
Length = 180
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 27/31 (87%), Gaps = 1/31 (3%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF 31
I+FLR YLNLPSEIVPATLKKQ KP GRPF
Sbjct: 74 IDFLRTYLNLPSEIVPATLKKQQKPL-GRPF 103
>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1
Length = 165
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRPRIF 42
I++LR YL+LP EIVPATL++ ++P GRP GP G+RP F
Sbjct: 76 IQYLRDYLHLPPEIVPATLRR-SRPETGRPRPKGPEGERPARF 117
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1
Length = 165
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRPRIF 42
I++LR YL+LP EIVPATL++ ++P GRP GP G+RP F
Sbjct: 76 IQYLRDYLHLPPEIVPATLRR-SRPETGRPRPKGPEGERPARF 117
>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2
SV=2
Length = 179
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 33/51 (64%), Gaps = 10/51 (19%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFG-------GP---GGDRPRI 41
IEFLR YLNLPS++VPATLKK AKP G G GP GGDRPR
Sbjct: 73 IEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRF 123
>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2
SV=1
Length = 177
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 32/51 (62%), Gaps = 10/51 (19%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAK--------PAGGRPFGGP--GGDRPRI 41
IEFLR YLNLPS++VPATLKK AK P G R G P GDRPR
Sbjct: 73 IEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRF 123
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1
Length = 156
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPRI 41
I++LR +L+LP EIVPATLK+Q +P RP G R ++
Sbjct: 73 IQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPRAQV 113
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1
Length = 166
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRP 39
I++LR +L+LP EIVPATL++Q +P RP G G+RP
Sbjct: 76 IQYLRDFLHLPPEIVPATLRRQTRPETARPRPKGLEGERP 115
>sp|O13614|RS10B_SCHPO 40S ribosomal protein S10-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10b PE=3 SV=1
Length = 147
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%), Gaps = 3/33 (9%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPA---GGRP 30
+E+LR YL+LP+E+VPAT K+Q +PA GRP
Sbjct: 73 VEYLREYLHLPAEVVPATHKRQVRPAAPRAGRP 105
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1
Length = 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRP 39
I++LR YL+LP EIVPATL++ ++P GRP G G+RP
Sbjct: 76 IQYLRDYLHLPPEIVPATLRR-SRPETGRPRPKGLEGERP 114
>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1
Length = 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRP 39
I++LR YL+LP EIVPATL++ ++P GRP G G+RP
Sbjct: 76 IQYLRDYLHLPPEIVPATLRR-SRPETGRPRPKGLEGERP 114
>sp|O14112|RS10A_SCHPO 40S ribosomal protein S10-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10a PE=3 SV=1
Length = 144
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPA---GGRP 30
+E+LR YL+LP+E+VPAT K+Q +P GRP
Sbjct: 73 VEYLREYLHLPAEVVPATHKRQVRPTAPRAGRP 105
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1
Length = 165
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRP 39
I++LR +L+LP EIVPATL++ ++P GRP G G+RP
Sbjct: 76 IQYLRDFLHLPPEIVPATLRR-SRPETGRPRPKGLEGERP 114
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b
PE=1 SV=2
Length = 160
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRP---FGGPGG 36
IE LR YL+LP EIVP+TLK+ A+ RP GGP G
Sbjct: 74 IEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGGPRG 112
>sp|O77082|RS10_DICDI 40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10
PE=1 SV=3
Length = 154
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQA 23
I++LR YL +P +VPAT+KKQA
Sbjct: 75 IKYLRTYLQVPESVVPATMKKQA 97
>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2
Length = 4687
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKP 25
I+ LR YL+LP EIVPA+L++ +P
Sbjct: 79 IDHLRQYLHLPPEIVPASLQRVRRP 103
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKP 25
I+ LR YL+LP EIVPA+L++ +P
Sbjct: 79 IDHLRQYLHLPPEIVPASLQRVRRP 103
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2
SV=1
Length = 158
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAK 24
IE+LR +L+LP EIVPATLK+ +
Sbjct: 74 IEYLRIFLHLPPEIVPATLKRSVR 97
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKP 25
I LR YL+LP EIVPA+L++ +P
Sbjct: 79 IAHLRQYLHLPPEIVPASLQRVRRP 103
>sp|Q9NQ39|RS10L_HUMAN Putative 40S ribosomal protein S10-like OS=Homo sapiens GN=RPS10P5
PE=5 SV=1
Length = 176
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Query: 2 EFLRGYLNLPSEIVPATLK----------KQAKPAGGRPF-GGPGGDRP 39
++LR YL+LP EIVPATL +++P GRP G G RP
Sbjct: 77 QYLRDYLHLPPEIVPATLHLPPEIVPATLHRSRPETGRPRPKGLEGKRP 125
>sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10B PE=1 SV=1
Length = 105
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRP 30
+E+LR YLNLP IVP T ++ P+ RP
Sbjct: 73 VEYLREYLNLPEHIVPGTYIQERNPS-QRP 101
>sp|Q08745|RS10A_YEAST 40S ribosomal protein S10-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10A PE=1 SV=1
Length = 105
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRP 30
+E+LR YLNLP IVP T ++ P RP
Sbjct: 73 VEYLREYLNLPEHIVPGTYIQERNPT-QRP 101
>sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a
PE=2 SV=1
Length = 163
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 1 IEFLRGYLNLPSEIVPATLKKQAK 24
IE LR YL+LP EIVP+TL + +
Sbjct: 74 IEELRRYLHLPPEIVPSTLTQTTR 97
>sp|Q0RRN7|GLMM_FRAAA Phosphoglucosamine mutase OS=Frankia alni (strain ACN14a) GN=glmM
PE=3 SV=2
Length = 455
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 3 FLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGG 36
F G L LP E+ A ++ A+P G RP G G
Sbjct: 120 FAAGGLKLPDEVEDAIERRMAQPPGPRPVGADVG 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.146 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,471,020
Number of Sequences: 539616
Number of extensions: 1265227
Number of successful extensions: 3098
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3070
Number of HSP's gapped (non-prelim): 28
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)