Query 035652
Match_columns 71
No_of_seqs 108 out of 154
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 07:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_K 40S ribosomal protein S 99.4 8.9E-14 3.1E-18 92.9 1.0 30 1-31 73-102 (105)
2 2xzm_7 Plectin/S10 domain cont 99.3 3.2E-13 1.1E-17 95.9 2.5 31 1-32 73-104 (162)
3 3c6w_A P28ING5, inhibitor of g 21.7 23 0.00078 19.9 0.3 11 59-69 36-46 (59)
4 2g6q_A Inhibitor of growth pro 19.5 26 0.00089 19.9 0.2 11 59-69 38-48 (62)
5 1pp7_U 39 kDa initiator bindin 17.8 15 0.0005 25.2 -1.3 18 10-27 14-31 (131)
6 1t1d_A Protein (potassium chan 16.5 39 0.0013 20.7 0.6 19 2-20 58-78 (100)
7 2dkp_A Pleckstrin homology dom 16.3 80 0.0027 18.0 1.9 29 41-69 65-93 (128)
8 1weu_A Inhibitor of growth fam 16.3 24 0.00082 21.9 -0.5 11 58-68 62-72 (91)
9 3kf8_B Protein TEN1; OB fold; 16.1 50 0.0017 22.1 1.0 30 31-65 15-44 (123)
10 4gdk_A Ubiquitin-like protein 16.0 40 0.0014 20.7 0.5 13 1-13 36-48 (91)
No 1
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=99.36 E-value=8.9e-14 Score=92.93 Aligned_cols=30 Identities=47% Similarity=0.847 Sum_probs=22.3
Q ss_pred ChhhhhhhCCCCCCchhhhhcccCCCCCCCC
Q 035652 1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF 31 (71)
Q Consensus 1 IeYLR~YLhLP~EIVPaTLkr~~r~~t~Rpr 31 (71)
|||||+|||||+||||||++++ +++++||+
T Consensus 73 ieyLR~yLhLP~eivPaTl~~~-~~~~~rp~ 102 (105)
T 3u5c_K 73 VEYLREYLNLPEHIVPGTYIQE-RNPTQRPQ 102 (105)
T ss_dssp HHHHHHHTCCCSSCCSSCSCCS-CC------
T ss_pred HHHHHHHhCCCchhcCcccccc-CCCCCCCC
Confidence 7999999999999999999997 44556664
No 2
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=99.33 E-value=3.2e-13 Score=95.91 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=26.8
Q ss_pred ChhhhhhhCCCCC-CchhhhhcccCCCCCCCCC
Q 035652 1 IEFLRGYLNLPSE-IVPATLKKQAKPAGGRPFG 32 (71)
Q Consensus 1 IeYLR~YLhLP~E-IVPaTLkr~~r~~t~Rpr~ 32 (71)
|||||+|||||+| |||+||+++.++ ++||++
T Consensus 73 IeYLR~yLhLP~e~IVPaTlk~~~~~-~~rp~~ 104 (162)
T 2xzm_7 73 CEYLKTKLGISADNVIPKTFKASNVN-FISKEE 104 (162)
T ss_dssp HHHHHHHHCSSTTSCCCGGGSCCCCC-CCCCCC
T ss_pred HHHHHHHhCCCccccccchhccccCC-CCCCCC
Confidence 7999999999999 999999998665 466655
No 3
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.66 E-value=23 Score=19.93 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=8.8
Q ss_pred eeeeeeccCCC
Q 035652 59 HSYCLNITTPE 69 (71)
Q Consensus 59 ~~~~~~~~~~~ 69 (71)
|..|++|+...
T Consensus 36 H~~Cvgl~~~p 46 (59)
T 3c6w_A 36 HFACVDLTTKP 46 (59)
T ss_dssp ETGGGTCSSCC
T ss_pred ecccCCcccCC
Confidence 88999988653
No 4
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=19.48 E-value=26 Score=19.93 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.8
Q ss_pred eeeeeeccCCC
Q 035652 59 HSYCLNITTPE 69 (71)
Q Consensus 59 ~~~~~~~~~~~ 69 (71)
|..|++|+...
T Consensus 38 H~~Cvgl~~~p 48 (62)
T 2g6q_A 38 HFSCVSLTYKP 48 (62)
T ss_dssp ETGGGTCSSCC
T ss_pred ecccCCcCcCC
Confidence 88999998653
No 5
>1pp7_U 39 kDa initiator binding protein; core promoter, transcription initation, IBP39, T. vaginalis, transcription/DNA complex; 2.45A {Trichomonas vaginalis} SCOP: a.4.5.44 PDB: 1pp8_U
Probab=17.80 E-value=15 Score=25.22 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=14.7
Q ss_pred CCCCCchhhhhcccCCCC
Q 035652 10 LPSEIVPATLKKQAKPAG 27 (71)
Q Consensus 10 LP~EIVPaTLkr~~r~~t 27 (71)
||+||+-+-.+|+.|++.
T Consensus 14 iP~ei~~~lk~ks~r~~~ 31 (131)
T 1pp7_U 14 LPPEIVAALKRKSSRDPN 31 (131)
T ss_dssp SCHHHHHHHHSCCCSSGG
T ss_pred CCHHHHHHHHHhccCCcc
Confidence 899999988888877663
No 6
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=16.49 E-value=39 Score=20.69 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=14.2
Q ss_pred hhhhh--hhCCCCCCchhhhh
Q 035652 2 EFLRG--YLNLPSEIVPATLK 20 (71)
Q Consensus 2 eYLR~--YLhLP~EIVPaTLk 20 (71)
.|||. -||+|+++-...+.
T Consensus 58 nflR~~G~l~~p~~~~~~~~~ 78 (100)
T 1t1d_A 58 YFYQSGGRLRRPVNVPLDVFS 78 (100)
T ss_dssp HHHHTTSCCCCCTTSCHHHHH
T ss_pred HHHhcCCcccCCCCCCHHHHH
Confidence 68996 89999998544444
No 7
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=16.27 E-value=80 Score=17.97 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=19.7
Q ss_pred hhhcceeeeEeecccceeeeeeeeccCCC
Q 035652 41 IFLSLCQVIFFLSSDYVAHSYCLNITTPE 69 (71)
Q Consensus 41 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (71)
..+..|.+...-..|...+.+|+.|.+++
T Consensus 65 i~L~~~~v~~~~~~~~~~~~~~F~i~~~~ 93 (128)
T 2dkp_A 65 ILLPSFQIALLTSEDHINRKYAFKAAHPN 93 (128)
T ss_dssp ECGGGSEEEECCGGGCCSSCSEEEEECSS
T ss_pred EEcCceEEEEcCCcccCCCCeEEEEEcCC
Confidence 45666776655555666777888887764
No 8
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=16.26 E-value=24 Score=21.89 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=8.8
Q ss_pred eeeeeeeccCC
Q 035652 58 AHSYCLNITTP 68 (71)
Q Consensus 58 ~~~~~~~~~~~ 68 (71)
-|..|++|+..
T Consensus 62 fH~~CVgl~~~ 72 (91)
T 1weu_A 62 FHFACVGLTTK 72 (91)
T ss_dssp CCSTTTTCSSC
T ss_pred EecccCCcCcC
Confidence 38899998864
No 9
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=16.08 E-value=50 Score=22.12 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=20.7
Q ss_pred CCCCCCCCchhhhcceeeeEeecccceeeeeeeec
Q 035652 31 FGGPGGDRPRIFLSLCQVIFFLSSDYVAHSYCLNI 65 (71)
Q Consensus 31 r~g~~gerp~r~~~~~~~~~~~~~~~~~~~~~~~~ 65 (71)
+|..-...|.|-|-|||++.| .+|+-||.+
T Consensus 15 FP~aS~s~p~kVR~L~QVisY-----d~~sa~L~l 44 (123)
T 3kf8_B 15 FPEASISNPERLRILAQVKDF-----IPHESTIVI 44 (123)
T ss_dssp CTTCBTTBCEEEEEEEEEEEE-----EGGGTEEEE
T ss_pred CccccccCCceEEEEEEEEEE-----cCCCcEEEE
Confidence 343445788899999999865 455556554
No 10
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=16.05 E-value=40 Score=20.68 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.2
Q ss_pred ChhhhhhhCCCCC
Q 035652 1 IEFLRGYLNLPSE 13 (71)
Q Consensus 1 IeYLR~YLhLP~E 13 (71)
|.+||..|+|+++
T Consensus 36 ~~~lRkrL~l~~~ 48 (91)
T 4gdk_A 36 IDFIKKFLKLVAS 48 (91)
T ss_dssp HHHHHHHTTCCSS
T ss_pred HHHHHHHhCCCCC
Confidence 3579999999765
Done!