Query 035652
Match_columns 71
No_of_seqs 108 out of 154
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 07:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035652.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035652hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ei1a1 d.14.1.3 (A:221-392) D 31.0 12 0.00085 23.7 1.9 23 49-71 37-59 (172)
2 d1s16a1 d.14.1.3 (A:1217-1383) 27.3 12 0.00088 23.6 1.5 18 54-71 44-61 (167)
3 d1kija1 d.14.1.3 (A:221-392) D 24.1 20 0.0015 22.5 2.1 22 50-71 38-59 (172)
4 d1qqga1 b.55.1.2 (A:12-114) In 22.3 22 0.0016 18.4 1.8 27 41-69 53-79 (103)
5 d1n62a2 d.15.4.2 (A:3-81) Carb 20.2 11 0.00083 21.4 0.2 10 2-11 25-34 (79)
6 d1rm6c2 d.15.4.2 (C:1-81) 4-hy 19.2 12 0.00088 21.3 0.2 10 2-11 26-35 (81)
7 d1pvga1 d.14.1.3 (A:246-406) D 19.0 34 0.0025 21.3 2.4 26 46-71 43-69 (161)
8 d1cyxa_ b.6.1.2 (A:) Quinol ox 17.4 32 0.0023 21.4 1.9 16 48-63 37-52 (158)
9 d1vlba2 d.15.4.2 (A:1-80) Alde 17.0 15 0.0011 21.1 0.2 10 2-11 25-34 (80)
10 d1ffva2 d.15.4.2 (A:3-81) Carb 16.8 15 0.0011 20.8 0.2 11 1-11 24-34 (79)
No 1
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=31.03 E-value=12 Score=23.70 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=17.7
Q ss_pred eEeecccceeeeeeeeccCCCCC
Q 035652 49 IFFLSSDYVAHSYCLNITTPELG 71 (71)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~ 71 (71)
.|.-+.+-...|||-||.||+=|
T Consensus 37 ~w~~~~~e~i~sfvN~I~T~~GG 59 (172)
T d1ei1a1 37 QWNDGFQENIYCFTNNIPQRDGG 59 (172)
T ss_dssp EEBSSCCEEEEEEETTEECTTCB
T ss_pred EEcCCCCceeeeeecccccCcCc
Confidence 45556666678999999999855
No 2
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=27.32 E-value=12 Score=23.64 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.1
Q ss_pred ccceeeeeeeeccCCCCC
Q 035652 54 SDYVAHSYCLNITTPELG 71 (71)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~ 71 (71)
.+....|||-||.||+=|
T Consensus 44 ~~~~~~SfvN~I~T~~GG 61 (167)
T d1s16a1 44 GELLTESYVNLIPTMQGG 61 (167)
T ss_dssp CCCCEEEEETTEECTTCB
T ss_pred CCcccceeecCcccccCc
Confidence 344567999999999855
No 3
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=24.13 E-value=20 Score=22.53 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=15.8
Q ss_pred EeecccceeeeeeeeccCCCCC
Q 035652 50 FFLSSDYVAHSYCLNITTPELG 71 (71)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~ 71 (71)
|--+.+....|||-||.||+=|
T Consensus 38 ~~~~~~e~i~SfvN~I~T~~GG 59 (172)
T d1kija1 38 HTQGYNAEILTYANMIPTRDGG 59 (172)
T ss_dssp EBSSSCCEEEEEETTEECTTCB
T ss_pred EcCCCceeeEEeecCccCCCCC
Confidence 3334455566999999999865
No 4
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.35 E-value=22 Score=18.39 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=17.3
Q ss_pred hhhcceeeeEeecccceeeeeeeeccCCC
Q 035652 41 IFLSLCQVIFFLSSDYVAHSYCLNITTPE 69 (71)
Q Consensus 41 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (71)
..+.-|.. +...+...+.+|+.|.|++
T Consensus 53 i~l~~~~~--~~~~~~~~~~~~f~i~t~~ 79 (103)
T d1qqga1 53 IPLESCFN--INKRADSKNKHLVALYTRD 79 (103)
T ss_dssp EEGGGEEE--EEEECCSSCSSEEEEEESS
T ss_pred EecceeeE--EeecccCCCceEEEEEeCC
Confidence 34445543 4455666778899988874
No 5
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=20.25 E-value=11 Score=21.40 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=7.8
Q ss_pred hhhhhhhCCC
Q 035652 2 EFLRGYLNLP 11 (71)
Q Consensus 2 eYLR~YLhLP 11 (71)
+|||+.|+|.
T Consensus 25 ~~LR~~~~lt 34 (79)
T d1n62a2 25 HFIREQQNLT 34 (79)
T ss_dssp HHHHHTSCCT
T ss_pred HHHhhhcCCc
Confidence 6888888875
No 6
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=19.17 E-value=12 Score=21.32 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=8.4
Q ss_pred hhhhhhhCCC
Q 035652 2 EFLRGYLNLP 11 (71)
Q Consensus 2 eYLR~YLhLP 11 (71)
+|||+.|+|.
T Consensus 26 ~~LR~~lglt 35 (81)
T d1rm6c2 26 DYLRETVGLT 35 (81)
T ss_dssp HHHHHTTCCT
T ss_pred HHHHHhhCCc
Confidence 6899999885
No 7
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.03 E-value=34 Score=21.32 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=19.4
Q ss_pred eeeeEeecccceee-eeeeeccCCCCC
Q 035652 46 CQVIFFLSSDYVAH-SYCLNITTPELG 71 (71)
Q Consensus 46 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 71 (71)
+.+-+..|.|...| |||-+|.|++-|
T Consensus 43 weva~~~s~~~~~~vSfVN~i~T~~GG 69 (161)
T d1pvga1 43 WEVAFAVSDISFQQISFVNSIATTMGG 69 (161)
T ss_dssp EEEEEEECSSSCEEEEEETTEECTTCB
T ss_pred EEEEEEEcCCCcEEEEEeecccCCCCc
Confidence 55556677776666 999999998755
No 8
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}
Probab=17.42 E-value=32 Score=21.40 Aligned_cols=16 Identities=38% Similarity=0.629 Sum_probs=13.6
Q ss_pred eeEeecccceeeeeee
Q 035652 48 VIFFLSSDYVAHSYCL 63 (71)
Q Consensus 48 ~~~~~~~~~~~~~~~~ 63 (71)
+.+.++|+-|.|++.+
T Consensus 37 V~~~ltS~DViHsF~v 52 (158)
T d1cyxa_ 37 VYFKVTSNSVMHSFFI 52 (158)
T ss_dssp EEEEEEESSSCEEEEE
T ss_pred EEEEEEcCCcchhhhh
Confidence 4588899999999986
No 9
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=16.99 E-value=15 Score=21.05 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=8.3
Q ss_pred hhhhhhhCCC
Q 035652 2 EFLRGYLNLP 11 (71)
Q Consensus 2 eYLR~YLhLP 11 (71)
+|||+.|+|.
T Consensus 25 d~LR~~lglt 34 (80)
T d1vlba2 25 DVLRQQLGLT 34 (80)
T ss_dssp HHHHHTTCCT
T ss_pred HHHhHhhCCc
Confidence 6899999884
No 10
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=16.82 E-value=15 Score=20.82 Aligned_cols=11 Identities=64% Similarity=0.863 Sum_probs=8.4
Q ss_pred ChhhhhhhCCC
Q 035652 1 IEFLRGYLNLP 11 (71)
Q Consensus 1 IeYLR~YLhLP 11 (71)
++|||+.|+|.
T Consensus 24 l~~LR~~~gl~ 34 (79)
T d1ffva2 24 IHFLREELNLT 34 (79)
T ss_dssp HHHHHHTSCCT
T ss_pred HHHHhhhcCCc
Confidence 36888888884
Done!