Your job contains 1 sequence.
>035653
MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF
CTQIHALTEPIDIYAEWIDECERANNS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035653
(87 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2161418 - symbol:AT5G46030 "AT5G46030" species... 250 2.4e-21 1
WB|WBGene00013219 - symbol:Y54G11A.11.2 species:6239 "Cae... 202 2.9e-16 1
UNIPROTKB|Q9XVZ8 - symbol:Y54G11A.11 "Transcription elong... 202 2.9e-16 1
CGD|CAL0003980 - symbol:orf19.6623 species:5476 "Candida ... 192 3.3e-15 1
FB|FBgn0063670 - symbol:CG40228 species:7227 "Drosophila ... 187 1.1e-14 1
SGD|S000001643 - symbol:ELF1 "Transcription elongation fa... 184 2.3e-14 1
UNIPROTKB|A4IFR3 - symbol:ELOF1 "Transcription elongation... 183 3.0e-14 1
UNIPROTKB|P60002 - symbol:ELOF1 "Transcription elongation... 183 3.0e-14 1
MGI|MGI:1913376 - symbol:Elof1 "elongation factor 1 homol... 183 3.0e-14 1
ZFIN|ZDB-GENE-040426-1385 - symbol:elof1 "elongation fact... 182 3.8e-14 1
FB|FBgn0036531 - symbol:CG6244 species:7227 "Drosophila m... 170 7.1e-13 1
DICTYBASE|DDB_G0287203 - symbol:elof1 "elongation factor ... 160 8.2e-12 1
POMBASE|SPAC1B3.02c - symbol:SPAC1B3.02c "transcription e... 158 1.3e-11 1
ASPGD|ASPL0000078186 - symbol:AN11131 species:162425 "Eme... 149 1.2e-10 1
UNIPROTKB|G4MN17 - symbol:MGG_06916 "Transcription elonga... 148 1.5e-10 1
>TAIR|locus:2161418 [details] [associations]
symbol:AT5G46030 "AT5G46030" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF05129 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872 GO:GO:0006351
EMBL:AB006698 eggNOG:COG4888 HOGENOM:HOG000159293
InterPro:IPR007808 PANTHER:PTHR20934 EMBL:BT002010 EMBL:BT006515
EMBL:AY085452 IPI:IPI00546931 RefSeq:NP_568654.1 UniGene:At.29979
UniGene:At.6861 UniGene:At.7260 ProteinModelPortal:Q8LEF3
SMR:Q8LEF3 IntAct:Q8LEF3 STRING:Q8LEF3 EnsemblPlants:AT5G46030.1
GeneID:834644 KEGG:ath:AT5G46030 TAIR:At5g46030 InParanoid:Q8LEF3
OMA:IDVYSDW PhylomeDB:Q8LEF3 ProtClustDB:CLSN2917736
Genevestigator:Q8LEF3 GermOnline:AT5G46030 Uniprot:Q8LEF3
Length = 120
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 52/87 (59%), Positives = 57/87 (65%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKSR M+KLDT F CPFC HG+SVEC ID K IG+A C C E F
Sbjct: 1 MGKRKSRAKPAPTKR----MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESF 56
Query: 61 CTQIHALTEPIDIYAEWIDECERANNS 87
T I ALTE IDIY+EWIDECER N +
Sbjct: 57 STTITALTEAIDIYSEWIDECERVNTA 83
>WB|WBGene00013219 [details] [associations]
symbol:Y54G11A.11.2 species:6239 "Caenorhabditis elegans"
[GO:0005730 "nucleolus" evidence=IDA] Pfam:PF05129 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0006351 EMBL:AL034488
eggNOG:COG4888 GeneTree:ENSGT00390000000053 HOGENOM:HOG000159293
InterPro:IPR007808 PANTHER:PTHR20934 OMA:IDVYSDW PIR:T27174
RefSeq:NP_496983.1 ProteinModelPortal:Q9XVZ8 SMR:Q9XVZ8
DIP:DIP-27150N MINT:MINT-1090855 STRING:Q9XVZ8 PaxDb:Q9XVZ8
EnsemblMetazoa:Y54G11A.11.1 EnsemblMetazoa:Y54G11A.11.2
EnsemblMetazoa:Y54G11A.11.3 GeneID:175090 KEGG:cel:CELE_Y54G11A.11
UCSC:Y54G11A.11.1 CTD:175090 WormBase:Y54G11A.11 InParanoid:Q9XVZ8
NextBio:886710 Uniprot:Q9XVZ8
Length = 84
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 38/87 (43%), Positives = 53/87 (60%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS+ + LDTQF CPFC H E ++D++ +G C C E F
Sbjct: 1 MGKRKSKRKAPTKAKA---VMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERANNS 87
T I+ L+EPID+Y++W+D CE+ANN+
Sbjct: 58 QTNINYLSEPIDVYSDWVDACEQANNA 84
>UNIPROTKB|Q9XVZ8 [details] [associations]
symbol:Y54G11A.11 "Transcription elongation factor 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF05129 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 EMBL:AL034488 eggNOG:COG4888
GeneTree:ENSGT00390000000053 HOGENOM:HOG000159293
InterPro:IPR007808 PANTHER:PTHR20934 OMA:IDVYSDW PIR:T27174
RefSeq:NP_496983.1 ProteinModelPortal:Q9XVZ8 SMR:Q9XVZ8
DIP:DIP-27150N MINT:MINT-1090855 STRING:Q9XVZ8 PaxDb:Q9XVZ8
EnsemblMetazoa:Y54G11A.11.1 EnsemblMetazoa:Y54G11A.11.2
EnsemblMetazoa:Y54G11A.11.3 GeneID:175090 KEGG:cel:CELE_Y54G11A.11
UCSC:Y54G11A.11.1 CTD:175090 WormBase:Y54G11A.11 InParanoid:Q9XVZ8
NextBio:886710 Uniprot:Q9XVZ8
Length = 84
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 38/87 (43%), Positives = 53/87 (60%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS+ + LDTQF CPFC H E ++D++ +G C C E F
Sbjct: 1 MGKRKSKRKAPTKAKA---VMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERANNS 87
T I+ L+EPID+Y++W+D CE+ANN+
Sbjct: 58 QTNINYLSEPIDVYSDWVDACEQANNA 84
>CGD|CAL0003980 [details] [associations]
symbol:orf19.6623 species:5476 "Candida albicans" [GO:0008023
"transcription elongation factor complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0034401 "regulation of transcription by chromatin
organization" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] CGD:CAL0003980 Pfam:PF05129
EMBL:AACQ01000165 EMBL:AACQ01000186 eggNOG:COG4888
HOGENOM:HOG000159293 InterPro:IPR007808 PANTHER:PTHR20934
RefSeq:XP_711689.1 RefSeq:XP_712163.1 ProteinModelPortal:Q59PU1
SMR:Q59PU1 STRING:Q59PU1 GeneID:3646195 GeneID:3646680
KEGG:cal:CaO19.13944 KEGG:cal:CaO19.6623 Uniprot:Q59PU1
Length = 128
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 39/82 (47%), Positives = 48/82 (58%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS + LDT F C FC H SV C IDKK +GE C C + F
Sbjct: 1 MGKRKS----SSRKPAKKIKQTLDTTFTCLFCNHEKSVICTIDKKNLLGELHCKICGQSF 56
Query: 61 CTQIHALTEPIDIYAEWIDECE 82
T IH+L++P+DIY++WID CE
Sbjct: 57 QTAIHSLSQPVDIYSDWIDACE 78
>FB|FBgn0063670 [details] [associations]
symbol:CG40228 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] Pfam:PF05129 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 eggNOG:COG4888 GeneTree:ENSGT00390000000053
InterPro:IPR007808 PANTHER:PTHR20934 OMA:IDVYSDW EMBL:CM000458
EMBL:AY129458 RefSeq:NP_001104426.1 UniGene:Dm.29274
ProteinModelPortal:Q8MQI6 SMR:Q8MQI6 DIP:DIP-21728N IntAct:Q8MQI6
MINT:MINT-309870 PRIDE:Q8MQI6 EnsemblMetazoa:FBtr0113841
EnsemblMetazoa:FBtr0333870 GeneID:5740664 KEGG:dme:Dmel_CG40228
UCSC:CG40228-RB FlyBase:FBgn0063670 InParanoid:Q8MQI6
OrthoDB:EOG4DR7W3 PhylomeDB:Q8MQI6 GenomeRNAi:5740664
NextBio:20891702 Bgee:Q8MQI6 GermOnline:CG40228 Uniprot:Q8MQI6
Length = 82
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/85 (44%), Positives = 49/85 (57%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS+ +E LD QF CPFC H S E ++DK + C CLE F
Sbjct: 1 MGRRKSKRKPPPKRKN---IEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T I+ L+EPID+Y +W+D CE AN
Sbjct: 58 QTGINFLSEPIDVYNDWVDACETAN 82
>SGD|S000001643 [details] [associations]
symbol:ELF1 "Transcription elongation factor with a conserved
zinc finger domain" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0034401 "regulation of transcription by
chromatin organization" evidence=IGI;IMP] [GO:0008023
"transcription elongation factor complex" evidence=IDA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IGI;IMP] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA] SGD:S000001643 Pfam:PF05129 GO:GO:0046872
EMBL:BK006944 GO:GO:0034401 GO:GO:0006368 EMBL:Z26877 GO:GO:0008023
GO:GO:0000993 EMBL:Z28160 EMBL:AY558355 PIR:S37791
RefSeq:NP_012762.1 ProteinModelPortal:P36053 SMR:P36053
DIP:DIP-2119N IntAct:P36053 MINT:MINT-508271 STRING:P36053
PaxDb:P36053 PeptideAtlas:P36053 EnsemblFungi:YKL160W GeneID:853697
KEGG:sce:YKL160W CYGD:YKL160w eggNOG:COG4888
GeneTree:ENSGT00390000000053 HOGENOM:HOG000159293 OMA:YSDWFDA
OrthoDB:EOG4K6KF0 NextBio:974681 Genevestigator:P36053
GermOnline:YKL160W InterPro:IPR007808 PANTHER:PTHR20934
Uniprot:P36053
Length = 145
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 35/86 (40%), Positives = 50/86 (58%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRK ++KLDT+F C FC H SV C +DKK IG C C + F
Sbjct: 1 MGKRKK----STRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSF 56
Query: 61 CTQIHALTEPIDIYAEWIDECERANN 86
T+I++L++P+D+Y++W D E N+
Sbjct: 57 QTRINSLSQPVDVYSDWFDAVEEVNS 82
>UNIPROTKB|A4IFR3 [details] [associations]
symbol:ELOF1 "Transcription elongation factor 1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
Pfam:PF05129 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 eggNOG:COG4888 GeneTree:ENSGT00390000000053
HOGENOM:HOG000159293 InterPro:IPR007808 PANTHER:PTHR20934
OMA:IDVYSDW EMBL:BC134722 IPI:IPI00847101 RefSeq:NP_001098978.1
UniGene:Bt.35648 ProteinModelPortal:A4IFR3 SMR:A4IFR3 STRING:A4IFR3
Ensembl:ENSBTAT00000052334 GeneID:100125945 KEGG:bta:100125945
CTD:84337 HOVERGEN:HBG024628 InParanoid:A4IFR3 OrthoDB:EOG4PRSSD
NextBio:20788892 ArrayExpress:A4IFR3 Uniprot:A4IFR3
Length = 83
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS+ +E TQF CPFC H S + ++D+ G C CLE F
Sbjct: 1 MGRRKSKRKPPPKKKMTGTLE---TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T I L+EP+D+Y++WID CE AN
Sbjct: 58 QTPITYLSEPVDVYSDWIDACEAAN 82
>UNIPROTKB|P60002 [details] [associations]
symbol:ELOF1 "Transcription elongation factor 1 homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF05129 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 eggNOG:COG4888 InterPro:IPR007808 PANTHER:PTHR20934
OMA:IDVYSDW CTD:84337 HOVERGEN:HBG024628 OrthoDB:EOG4PRSSD
EMBL:BC007516 IPI:IPI00063650 RefSeq:NP_115753.1 UniGene:Hs.631633
ProteinModelPortal:P60002 SMR:P60002 IntAct:P60002 STRING:P60002
PhosphoSite:P60002 DMDM:38372864 DNASU:84337
Ensembl:ENST00000252445 GeneID:84337 KEGG:hsa:84337 UCSC:uc002msd.1
GeneCards:GC19M011663 HGNC:HGNC:28691 HPA:HPA045606
neXtProt:NX_P60002 PharmGKB:PA142671911 InParanoid:P60002
PhylomeDB:P60002 ChiTaRS:ELOF1 GenomeRNAi:84337 NextBio:74117
Bgee:P60002 CleanEx:HS_ELOF1 Genevestigator:P60002
GermOnline:ENSG00000130165 Uniprot:P60002
Length = 83
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS+ +E TQF CPFC H S + ++D+ G C CLE F
Sbjct: 1 MGRRKSKRKPPPKKKMTGTLE---TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T I L+EP+D+Y++WID CE AN
Sbjct: 58 QTPITYLSEPVDVYSDWIDACEAAN 82
>MGI|MGI:1913376 [details] [associations]
symbol:Elof1 "elongation factor 1 homolog (ELF1, S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003746 "translation
elongation factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006414 "translational elongation"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] MGI:MGI:1913376
Pfam:PF05129 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 eggNOG:COG4888 InterPro:IPR007808 PANTHER:PTHR20934
OMA:IDVYSDW CTD:84337 HOVERGEN:HBG024628 OrthoDB:EOG4PRSSD
ChiTaRS:ELOF1 EMBL:BC019870 EMBL:BC024488 EMBL:BC056225
IPI:IPI00172371 RefSeq:NP_740747.1 UniGene:Mm.29801 PDB:1WII
PDBsum:1WII ProteinModelPortal:P60003 SMR:P60003 STRING:P60003
PhosphoSite:P60003 PaxDb:P60003 PRIDE:P60003
Ensembl:ENSMUST00000013966 Ensembl:ENSMUST00000166335 GeneID:66126
KEGG:mmu:66126 InParanoid:P60003 EvolutionaryTrace:P60003
NextBio:320710 Bgee:P60003 CleanEx:MM_ELOF1 Genevestigator:P60003
GermOnline:ENSMUSG00000013822 Uniprot:P60003
Length = 83
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS+ +E TQF CPFC H S + ++D+ G C CLE F
Sbjct: 1 MGRRKSKRKPPPKKKMTGTLE---TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T I L+EP+D+Y++WID CE AN
Sbjct: 58 QTPITYLSEPVDVYSDWIDACEAAN 82
>ZFIN|ZDB-GENE-040426-1385 [details] [associations]
symbol:elof1 "elongation factor 1 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
Pfam:PF05129 ZFIN:ZDB-GENE-040426-1385 eggNOG:COG4888
GeneTree:ENSGT00390000000053 HOGENOM:HOG000159293
InterPro:IPR007808 PANTHER:PTHR20934 OMA:IDVYSDW CTD:84337
HOVERGEN:HBG024628 OrthoDB:EOG4PRSSD EMBL:CU571395 EMBL:BC053290
IPI:IPI00500193 RefSeq:NP_956680.1 UniGene:Dr.76445 SMR:Q7T319
STRING:Q7T319 Ensembl:ENSDART00000064025 GeneID:393357
KEGG:dre:393357 InParanoid:Q7T319 NextBio:20814407 Uniprot:Q7T319
Length = 83
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS+ LDTQF CPFC H S + ++++ G C CLE F
Sbjct: 1 MGRRKSKRKPPPKKKMTG---NLDTQFTCPFCNHEKSCDVKMERSRNTGIISCTVCLEEF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T I L+EP+D+Y++WID CE AN
Sbjct: 58 QTPITYLSEPVDVYSDWIDACEAAN 82
>FB|FBgn0036531 [details] [associations]
symbol:CG6244 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF05129 EMBL:AE014296 eggNOG:COG4888
GeneTree:ENSGT00390000000053 InterPro:IPR007808 PANTHER:PTHR20934
EMBL:BT124811 RefSeq:NP_996099.1 UniGene:Dm.24890 SMR:Q7KUN6
IntAct:Q7KUN6 EnsemblMetazoa:FBtr0075502 GeneID:2768962
KEGG:dme:Dmel_CG6244 UCSC:CG6244-RA FlyBase:FBgn0036531
InParanoid:Q7KUN6 OMA:AFDCPFC OrthoDB:EOG44XH0F GenomeRNAi:2768962
NextBio:848833 Uniprot:Q7KUN6
Length = 82
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 35/85 (41%), Positives = 46/85 (54%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS+ ++ L F CPFC H S E ++DK +IG C C E F
Sbjct: 1 MGRRKSKRKGAPRKKN---IQPLPILFDCPFCNHKQSCEAKLDKAKKIGRITCTVCQEFF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T I+ LTE ID++ +WID CE N
Sbjct: 58 QTHINYLTEAIDVFNDWIDACEEEN 82
>DICTYBASE|DDB_G0287203 [details] [associations]
symbol:elof1 "elongation factor 1" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000993 "RNA polymerase II core binding" evidence=ISS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] dictyBase:DDB_G0287203 Pfam:PF05129
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006368 GO:GO:0000993 eggNOG:COG4888 InterPro:IPR007808
PANTHER:PTHR20934 OMA:IDVYSDW EMBL:AAFI02000098 RefSeq:XP_637365.1
HSSP:P60003 ProteinModelPortal:Q54KR5 STRING:Q54KR5
EnsemblProtists:DDB0266346 GeneID:8625987 KEGG:ddi:DDB_G0287203
ProtClustDB:CLSZ2846675 Uniprot:Q54KR5
Length = 80
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS ++KL F C FC H SV+C +D+++ G A C C +
Sbjct: 1 MGKRKS-----SKPPPKKVVQKLPKHFDCLFCAHSQSVDCILDRELGKGVAKCRVCNASY 55
Query: 61 CTQIHALTEPIDIYAEWIDECE 82
T IH L++ ID+Y++WID CE
Sbjct: 56 ETPIHELSDAIDVYSDWIDACE 77
>POMBASE|SPAC1B3.02c [details] [associations]
symbol:SPAC1B3.02c "transcription elongation factor,
Elf1 family (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006325 "chromatin
organization" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=ISM]
PomBase:SPAC1B3.02c Pfam:PF05129 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006368
GO:GO:0006325 eggNOG:COG4888 HOGENOM:HOG000159293 OrthoDB:EOG4K6KF0
InterPro:IPR007808 PANTHER:PTHR20934 OMA:IDVYSDW PIR:T38020
RefSeq:NP_594786.1 ProteinModelPortal:O13868 STRING:O13868
EnsemblFungi:SPAC1B3.02c.1 GeneID:2542550 KEGG:spo:SPAC1B3.02c
NextBio:20803602 Uniprot:O13868
Length = 107
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/86 (38%), Positives = 44/86 (51%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRK++ LDT F C FC H SV C +DK+ +G C C +
Sbjct: 1 MGKRKAKAKVKPKRRA----PPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSH 56
Query: 61 CTQIHALTEPIDIYAEWIDECERANN 86
I AL+ PID+Y++WID C+ N
Sbjct: 57 QCLITALSAPIDVYSDWIDACDAVAN 82
>ASPGD|ASPL0000078186 [details] [associations]
symbol:AN11131 species:162425 "Emericella nidulans"
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0034401 "regulation of transcription by
chromatin organization" evidence=IEA] Pfam:PF05129 EMBL:BN001303
HOGENOM:HOG000159293 InterPro:IPR007808 PANTHER:PTHR20934
EnsemblFungi:CADANIAT00006177 OMA:HENSIVV Uniprot:C8V9A6
Length = 122
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRK E L + F C FC H S+ ++DKK+ +G C C +RF
Sbjct: 1 MGKRKK---SSRQPQQPKKKEPLPSTFACLFCNHENSIVVKLDKKLGLGHLSCKVCGQRF 57
Query: 61 CTQIHALTEPIDIYAEWIDECE 82
T I+ L+ +D+Y++W+D C+
Sbjct: 58 QTGINYLSAAVDVYSDWVDACD 79
>UNIPROTKB|G4MN17 [details] [associations]
symbol:MGG_06916 "Transcription elongation factor"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005634 "nucleus"
evidence=ISS] [GO:0006325 "chromatin organization" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=ISS] Pfam:PF05129 GO:GO:0005634 GO:GO:0006355
GO:GO:0008270 GO:GO:0003746 GO:GO:0006368 EMBL:CM001231
GO:GO:0006325 InterPro:IPR007808 PANTHER:PTHR20934
RefSeq:XP_003709651.1 ProteinModelPortal:G4MN17
EnsemblFungi:MGG_06916T0 GeneID:2685089 KEGG:mgr:MGG_06916
Uniprot:G4MN17
Length = 123
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 1 MGKRKSRXXXXXXXXXXXXMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS + L TQF C FC H SV+ ++DKK+ +G C C +RF
Sbjct: 1 MGKRKS----SSKPPPKKKKDPLPTQFTCLFCNHEKSVDVKLDKKMGVGNLECKICGQRF 56
Query: 61 CTQIHALTEPIDIYAEWIDECE 82
I+ L+ +D+Y EW+D +
Sbjct: 57 QCGINYLSAAVDVYGEWVDAAD 78
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.138 0.471 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 87 75 0.00091 102 3 11 22 0.48 28
29 0.47 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 563 (60 KB)
Total size of DFA: 126 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.14u 0.17s 9.31t Elapsed: 00:00:00
Total cpu time: 9.15u 0.17s 9.32t Elapsed: 00:00:00
Start: Fri May 10 02:12:46 2013 End: Fri May 10 02:12:46 2013