BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035653
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog OS=Oryza sativa subsp.
japonica GN=Os07g0631100 PE=3 SV=1
Length = 89
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS A K M+KLDT F CPFC HG+SVECRID K IGEA C C E F
Sbjct: 1 MGKRKS----AAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENF 56
Query: 61 CTQIHALTEPIDIYAEWIDECERANN 86
T ++ALTEPIDIY+EWIDECER NN
Sbjct: 57 STTVNALTEPIDIYSEWIDECERVNN 82
>sp|Q8LEF3|ELOF1_ARATH Transcription elongation factor 1 homolog OS=Arabidopsis thaliana
GN=At5g46030 PE=2 SV=1
Length = 120
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 60/87 (68%), Gaps = 4/87 (4%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKSR A TK M+KLDT F CPFC HG+SVEC ID K IG+A C C E F
Sbjct: 1 MGKRKSRAKPA----PTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESF 56
Query: 61 CTQIHALTEPIDIYAEWIDECERANNS 87
T I ALTE IDIY+EWIDECER N +
Sbjct: 57 STTITALTEAIDIYSEWIDECERVNTA 83
>sp|Q9XVZ8|ELOF1_CAEEL Transcription elongation factor 1 homolog OS=Caenorhabditis
elegans GN=Y54G11A.11 PE=3 SV=1
Length = 84
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS++ K K + LDTQF CPFC H E ++D++ +G C C E F
Sbjct: 1 MGKRKSKRKAPT---KAKAVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERANNS 87
T I+ L+EPID+Y++W+D CE+ANN+
Sbjct: 58 QTNINYLSEPIDVYSDWVDACEQANNA 84
>sp|Q8MQI6|ELOF1_DROME Transcription elongation factor 1 homolog OS=Drosophila
melanogaster GN=CG40228 PE=1 SV=1
Length = 82
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS++ K K +E LD QF CPFC H S E ++DK + C CLE F
Sbjct: 1 MGRRKSKRKPP---PKRKNIEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T I+ L+EPID+Y +W+D CE AN
Sbjct: 58 QTGINFLSEPIDVYNDWVDACETAN 82
>sp|Q9U501|ELOF1_MANSE Transcription elongation factor 1 homolog OS=Manduca sexta PE=3
SV=1
Length = 82
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+RKS++ K K +E LD QF CPFC H S E ++D+ C CLE F
Sbjct: 1 MGRRKSKRKPP---PKRKAIEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDF 57
Query: 61 CTQIHALTEPIDIYAEWIDECERAN 85
T + L+EPID+Y +W+D CE AN
Sbjct: 58 HTTTNVLSEPIDVYNDWVDACESAN 82
>sp|P36053|ELF1_YEAST Transcription elongation factor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1
Length = 145
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRK K + ++KLDT+F C FC H SV C +DKK IG C C + F
Sbjct: 1 MGKRKKSTRKPT----KRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSF 56
Query: 61 CTQIHALTEPIDIYAEWIDECERANN 86
T+I++L++P+D+Y++W D E N+
Sbjct: 57 QTRINSLSQPVDVYSDWFDAVEEVNS 82
>sp|P60003|ELOF1_MOUSE Transcription elongation factor 1 homolog OS=Mus musculus
GN=Elof1 PE=1 SV=1
Length = 83
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWIDECE 82
L+TQF CPFC H S + ++D+ G C CLE F T I L+EP+D+Y++WID CE
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79
Query: 83 RAN 85
AN
Sbjct: 80 AAN 82
>sp|P60002|ELOF1_HUMAN Transcription elongation factor 1 homolog OS=Homo sapiens
GN=ELOF1 PE=2 SV=1
Length = 83
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWIDECE 82
L+TQF CPFC H S + ++D+ G C CLE F T I L+EP+D+Y++WID CE
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79
Query: 83 RAN 85
AN
Sbjct: 80 AAN 82
>sp|A4IFR3|ELOF1_BOVIN Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1
PE=2 SV=1
Length = 83
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWIDECE 82
L+TQF CPFC H S + ++D+ G C CLE F T I L+EP+D+Y++WID CE
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79
Query: 83 RAN 85
AN
Sbjct: 80 AAN 82
>sp|Q54KR5|ELOF1_DICDI Transcription elongation factor 1 homolog OS=Dictyostelium
discoideum GN=elof1 PE=3 SV=1
Length = 80
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRKS K K ++KL F C FC H SV+C +D+++ G A C C +
Sbjct: 1 MGKRKSSKPPP-----KKVVQKLPKHFDCLFCAHSQSVDCILDRELGKGVAKCRVCNASY 55
Query: 61 CTQIHALTEPIDIYAEWIDECE 82
T IH L++ ID+Y++WID CE
Sbjct: 56 ETPIHELSDAIDVYSDWIDACE 77
>sp|O13868|ELOF1_SCHPO Transcription elongation factor 1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1
SV=1
Length = 107
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MGKRK+ KAK VK + LDT F C FC H SV C +DK+ +G C C +
Sbjct: 1 MGKRKA-KAK---VKPKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSH 56
Query: 61 CTQIHALTEPIDIYAEWIDECERANN 86
I AL+ PID+Y++WID C+ N
Sbjct: 57 QCLITALSAPIDVYSDWIDACDAVAN 82
>sp|Q8STS7|ELOF1_ENCCU Transcription elongation factor 1 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU09_0850 PE=3 SV=2
Length = 80
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 1 MGKRKSRKAKAVGVKKTKGMEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60
MG+R+ ++ + K +L+ +F CP C H V+C + K + G A C C F
Sbjct: 1 MGRRRVKRR----INIPKRQSRLEKRFNCPVCNHENVVQCTVKKTLMKGFANCSVCEASF 56
Query: 61 CTQIHALTEPIDIYAEWIDEC 81
+ LT ID+Y+ W+DEC
Sbjct: 57 ACDANKLTTGIDVYSAWVDEC 77
>sp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760
OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1
Length = 578
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 41 RIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAE 76
RI K ++F W CL RF +Q E +D+Y +
Sbjct: 59 RILKGFNGHDSFSWGCLVRFLSQHRKFKETVDVYID 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,923,084
Number of Sequences: 539616
Number of extensions: 1052724
Number of successful extensions: 2893
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2879
Number of HSP's gapped (non-prelim): 14
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)