Query 035653
Match_columns 87
No_of_seqs 103 out of 190
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wii_A Hypothetical UPF0222 pr 100.0 3.7E-45 1.3E-49 238.0 9.7 82 2-87 2-84 (85)
2 1vq8_Z 50S ribosomal protein L 96.2 0.0025 8.6E-08 40.5 2.5 46 23-74 24-69 (83)
3 1pft_A TFIIB, PFTFIIBN; N-term 95.9 0.0039 1.3E-07 35.2 1.9 34 25-63 4-37 (50)
4 1ffk_W Ribosomal protein L37AE 95.7 0.0098 3.4E-07 37.1 3.4 38 21-64 22-59 (73)
5 3iz5_m 60S ribosomal protein L 95.6 0.0067 2.3E-07 39.4 2.5 55 24-84 34-89 (92)
6 3j21_i 50S ribosomal protein L 95.6 0.0063 2.1E-07 38.9 2.3 40 25-70 34-73 (83)
7 3izc_m 60S ribosomal protein R 95.5 0.0064 2.2E-07 39.6 2.0 43 25-73 35-77 (92)
8 1dl6_A Transcription factor II 95.1 0.0071 2.4E-07 35.7 1.3 45 22-77 7-51 (58)
9 3jyw_9 60S ribosomal protein L 95.1 0.0049 1.7E-07 38.5 0.6 40 25-70 25-64 (72)
10 4a17_Y RPL37A, 60S ribosomal p 95.1 0.014 4.7E-07 38.7 2.7 43 25-73 35-77 (103)
11 3cc2_Z 50S ribosomal protein L 94.4 0.014 4.7E-07 39.4 1.5 45 24-74 58-102 (116)
12 1k81_A EIF-2-beta, probable tr 94.1 0.067 2.3E-06 28.8 3.6 31 28-61 2-32 (36)
13 3ga8_A HTH-type transcriptiona 93.9 0.095 3.2E-06 31.8 4.4 35 28-62 4-48 (78)
14 1qyp_A RNA polymerase II; tran 93.7 0.14 4.7E-06 29.4 4.7 37 25-61 14-54 (57)
15 1tfi_A Transcriptional elongat 93.3 0.21 7E-06 28.6 4.9 38 24-61 7-48 (50)
16 1twf_I B12.6, DNA-directed RNA 92.1 0.21 7.3E-06 32.9 4.4 32 28-61 6-37 (122)
17 3o9x_A Uncharacterized HTH-typ 91.5 0.3 1E-05 31.1 4.5 50 28-82 4-63 (133)
18 2js4_A UPF0434 protein BB2007; 91.3 0.14 4.9E-06 31.2 2.7 41 21-67 3-45 (70)
19 2fiy_A Protein FDHE homolog; F 90.2 0.36 1.2E-05 36.6 4.5 49 26-74 222-277 (309)
20 2pk7_A Uncharacterized protein 88.6 0.2 6.7E-06 30.5 1.7 40 22-67 4-45 (69)
21 2jr6_A UPF0434 protein NMA0874 88.6 0.23 7.9E-06 30.1 2.0 41 21-67 3-45 (68)
22 2fiy_A Protein FDHE homolog; F 88.2 0.58 2E-05 35.4 4.4 39 24-62 180-220 (309)
23 2apo_B Ribosome biogenesis pro 88.1 0.19 6.4E-06 30.2 1.3 43 26-80 6-48 (60)
24 1pqv_S STP-alpha, transcriptio 88.0 0.56 1.9E-05 35.2 4.2 38 25-62 267-308 (309)
25 2hf1_A Tetraacyldisaccharide-1 87.8 0.21 7.2E-06 30.3 1.4 40 22-67 4-45 (68)
26 4esj_A Type-2 restriction enzy 87.8 0.26 8.9E-06 37.1 2.2 59 25-85 33-95 (257)
27 3j20_Y 30S ribosomal protein S 87.6 0.35 1.2E-05 27.6 2.2 28 27-60 20-47 (50)
28 2aus_D NOP10, ribosome biogene 86.6 0.33 1.1E-05 29.1 1.8 43 26-80 5-47 (60)
29 2e9h_A EIF-5, eukaryotic trans 86.3 1.1 3.8E-05 31.2 4.7 38 25-63 102-139 (157)
30 3h0g_I DNA-directed RNA polyme 85.9 0.25 8.7E-06 32.1 1.2 30 29-60 7-36 (113)
31 1dxg_A Desulforedoxin; non-hem 85.9 0.59 2E-05 24.8 2.4 31 22-59 2-32 (36)
32 2k4x_A 30S ribosomal protein S 85.8 0.36 1.2E-05 28.1 1.7 29 26-60 18-46 (55)
33 1nui_A DNA primase/helicase; z 85.3 0.59 2E-05 33.2 2.9 30 25-59 13-42 (255)
34 2jny_A Uncharacterized BCR; st 84.6 0.38 1.3E-05 29.2 1.4 41 21-67 5-47 (67)
35 1twf_I B12.6, DNA-directed RNA 84.2 1.2 4.2E-05 29.2 3.9 42 22-63 67-113 (122)
36 3k1f_M Transcription initiatio 83.8 0.93 3.2E-05 32.8 3.4 52 20-80 15-66 (197)
37 2xzm_6 RPS27E; ribosome, trans 83.7 1.7 5.8E-05 27.5 4.2 41 17-62 20-63 (81)
38 3h0g_I DNA-directed RNA polyme 83.1 0.7 2.4E-05 30.0 2.3 40 21-60 66-110 (113)
39 6rxn_A Rubredoxin; electron tr 83.0 0.46 1.6E-05 26.9 1.2 16 22-37 26-41 (46)
40 1gh9_A 8.3 kDa protein (gene M 82.9 1.5 5.1E-05 26.8 3.6 49 26-83 4-53 (71)
41 4bbr_M Transcription initiatio 82.1 0.77 2.6E-05 34.8 2.5 50 20-78 15-64 (345)
42 1vd4_A Transcription initiatio 81.8 0.39 1.3E-05 26.6 0.6 39 23-65 11-54 (62)
43 1e8j_A Rubredoxin; iron-sulfur 81.5 0.54 1.9E-05 27.0 1.2 18 20-37 30-47 (52)
44 3po3_S Transcription elongatio 81.1 0.38 1.3E-05 33.7 0.4 37 25-61 136-176 (178)
45 2kpi_A Uncharacterized protein 81.0 0.9 3.1E-05 26.4 2.0 39 21-67 5-47 (56)
46 1yk4_A Rubredoxin, RD; electro 80.7 0.78 2.7E-05 26.4 1.7 21 20-40 29-49 (52)
47 2v3b_B Rubredoxin 2, rubredoxi 80.6 0.62 2.1E-05 27.1 1.2 21 21-41 31-51 (55)
48 3k7a_M Transcription initiatio 80.6 0.28 9.5E-06 37.0 -0.4 49 20-77 15-63 (345)
49 2g2k_A EIF-5, eukaryotic trans 80.5 2.2 7.4E-05 30.1 4.2 35 26-61 96-130 (170)
50 2kvh_A Zinc finger and BTB dom 80.4 0.55 1.9E-05 20.9 0.8 10 25-34 2-11 (27)
51 2kvg_A Zinc finger and BTB dom 79.5 0.52 1.8E-05 21.3 0.5 10 25-34 2-11 (27)
52 1p7a_A BF3, BKLF, kruppel-like 78.3 0.83 2.8E-05 21.8 1.1 11 24-34 9-19 (37)
53 3p2a_A Thioredoxin 2, putative 77.8 0.33 1.1E-05 30.7 -0.7 55 26-84 5-73 (148)
54 2m0d_A Zinc finger and BTB dom 77.8 0.81 2.8E-05 20.3 0.9 10 25-34 2-11 (30)
55 1dx8_A Rubredoxin; electron tr 77.0 0.9 3.1E-05 27.6 1.2 22 21-42 35-56 (70)
56 3j21_g 50S ribosomal protein L 76.1 0.26 8.9E-06 28.6 -1.4 25 25-59 13-37 (51)
57 1ard_A Yeast transcription fac 76.1 0.97 3.3E-05 20.0 0.9 9 26-34 2-10 (29)
58 4rxn_A Rubredoxin; electron tr 76.1 1 3.5E-05 26.2 1.2 19 19-37 29-47 (54)
59 2kvf_A Zinc finger and BTB dom 75.9 1 3.5E-05 20.0 1.0 10 25-34 2-11 (28)
60 2m0e_A Zinc finger and BTB dom 75.5 0.97 3.3E-05 19.8 0.8 9 26-34 2-10 (29)
61 1nee_A EIF-2-beta, probable tr 75.5 0.78 2.7E-05 31.2 0.7 32 25-59 101-132 (138)
62 2els_A Zinc finger protein 406 75.0 1 3.5E-05 21.4 0.9 11 24-34 7-17 (36)
63 2elt_A Zinc finger protein 406 74.9 0.97 3.3E-05 21.3 0.8 11 24-34 7-17 (36)
64 1paa_A Yeast transcription fac 73.9 1.2 4E-05 19.9 0.9 9 26-34 2-10 (30)
65 1rik_A E6APC1 peptide; E6-bind 73.9 1 3.4E-05 20.0 0.7 9 26-34 2-10 (29)
66 2elq_A Zinc finger protein 406 73.8 1.2 4E-05 21.2 0.9 11 24-34 7-17 (36)
67 2kn9_A Rubredoxin; metalloprot 73.7 1.7 5.8E-05 27.3 1.9 21 22-42 56-76 (81)
68 2ct7_A Ring finger protein 31; 73.4 4.1 0.00014 24.7 3.6 51 24-80 23-79 (86)
69 2epq_A POZ-, at HOOK-, and zin 73.3 1.3 4.4E-05 22.3 1.1 10 24-33 36-45 (45)
70 2elx_A Zinc finger protein 406 73.2 1.2 4E-05 20.8 0.8 11 24-34 5-15 (35)
71 2elp_A Zinc finger protein 406 73.0 1.1 3.9E-05 21.4 0.8 11 24-34 7-17 (37)
72 2lvu_A Zinc finger and BTB dom 75.4 0.72 2.4E-05 20.3 0.0 9 26-34 2-10 (26)
73 1d0q_A DNA primase; zinc-bindi 72.3 2 6.8E-05 27.0 2.0 30 26-59 37-67 (103)
74 2lvr_A Zinc finger and BTB dom 74.7 0.77 2.6E-05 20.6 0.0 10 25-34 2-11 (30)
75 2m0f_A Zinc finger and BTB dom 71.9 1.3 4.3E-05 19.5 0.8 8 26-33 2-9 (29)
76 1klr_A Zinc finger Y-chromosom 71.4 1.3 4.5E-05 19.5 0.7 9 26-34 2-10 (30)
77 2elr_A Zinc finger protein 406 70.8 1.6 5.6E-05 20.5 1.1 11 24-34 7-17 (36)
78 2ytb_A Zinc finger protein 32; 70.6 1.6 5.5E-05 21.3 1.1 11 24-34 9-19 (42)
79 2d74_B Translation initiation 70.5 0.66 2.3E-05 32.0 -0.6 33 25-60 103-135 (148)
80 3j20_W 30S ribosomal protein S 70.4 6.8 0.00023 23.6 4.0 42 17-63 3-47 (63)
81 2elm_A Zinc finger protein 406 70.3 1.4 4.8E-05 21.3 0.8 11 24-34 7-17 (37)
82 3pwf_A Rubrerythrin; non heme 70.1 1.5 5.3E-05 30.2 1.2 29 22-59 134-162 (170)
83 1wd2_A Ariadne-1 protein homol 70.0 0.47 1.6E-05 27.8 -1.3 32 26-63 6-39 (60)
84 2x5c_A Hypothetical protein OR 69.9 3.9 0.00013 27.2 3.1 19 28-46 54-72 (131)
85 2elv_A Zinc finger protein 406 69.5 1.6 5.4E-05 20.7 0.8 11 24-34 7-17 (36)
86 1vzi_A Desulfoferrodoxin; ferr 69.5 2.8 9.5E-05 27.7 2.3 34 23-63 4-37 (126)
87 1s24_A Rubredoxin 2; electron 69.2 1.8 6E-05 27.5 1.2 21 21-41 63-83 (87)
88 2elo_A Zinc finger protein 406 68.9 1.4 4.7E-05 21.0 0.5 11 24-34 7-17 (37)
89 1srk_A Zinc finger protein ZFP 68.7 1.7 5.8E-05 20.3 0.8 10 25-34 6-15 (35)
90 2kfq_A FP1; protein, de novo p 68.2 1.7 5.9E-05 20.3 0.8 9 26-34 2-10 (32)
91 1twf_L ABC10-alpha, DNA-direct 68.0 0.42 1.4E-05 29.2 -1.9 30 23-59 25-54 (70)
92 2lvt_A Zinc finger and BTB dom 71.1 1.1 3.7E-05 20.1 0.0 9 26-34 2-10 (29)
93 1njq_A Superman protein; zinc- 67.4 2 6.7E-05 20.8 1.0 11 24-34 4-14 (39)
94 2jvm_A Uncharacterized protein 67.2 4.6 0.00016 25.3 2.8 36 24-63 26-66 (80)
95 3a43_A HYPD, hydrogenase nicke 67.0 2 6.8E-05 28.7 1.2 13 24-36 105-117 (139)
96 2kwq_A Protein MCM10 homolog; 66.9 0.91 3.1E-05 29.2 -0.5 32 21-59 43-74 (92)
97 2yte_A Zinc finger protein 473 66.8 2.2 7.4E-05 20.8 1.0 11 24-34 8-18 (42)
98 2en7_A Zinc finger protein 268 66.5 2.1 7.3E-05 21.0 1.0 11 24-34 10-20 (44)
99 3h0g_L DNA-directed RNA polyme 66.3 1 3.5E-05 27.1 -0.4 31 24-61 19-49 (63)
100 3qt1_I DNA-directed RNA polyme 66.3 0.83 2.9E-05 30.8 -0.8 37 21-60 20-56 (133)
101 1rim_A E6APC2 peptide; E6-bind 66.0 2 6.8E-05 20.3 0.8 9 26-34 2-10 (33)
102 2eof_A Zinc finger protein 268 65.8 2.1 7.3E-05 21.0 0.9 11 24-34 10-20 (44)
103 2el5_A Zinc finger protein 268 65.7 2.1 7E-05 21.0 0.8 11 24-34 8-18 (42)
104 1fv5_A First zinc finger of U- 65.7 1.7 5.9E-05 22.5 0.5 11 24-34 6-16 (36)
105 2ept_A Zinc finger protein 32; 65.6 2.1 7.1E-05 20.9 0.8 11 24-34 8-18 (41)
106 2eow_A Zinc finger protein 347 65.3 2.2 7.5E-05 21.3 0.9 11 24-34 10-20 (46)
107 2en2_A B-cell lymphoma 6 prote 65.2 2.3 7.8E-05 20.8 0.9 11 24-34 9-19 (42)
108 2eq1_A Zinc finger protein 347 64.9 2.4 8.1E-05 21.2 1.0 11 24-34 10-20 (46)
109 2yu5_A Zinc finger protein 473 64.9 2.1 7.2E-05 21.2 0.8 11 24-34 10-20 (44)
110 2eos_A B-cell lymphoma 6 prote 64.8 2.4 8.3E-05 20.7 1.0 11 24-34 9-19 (42)
111 2en3_A ZFP-95, zinc finger pro 64.7 2.2 7.5E-05 21.4 0.8 11 24-34 10-20 (46)
112 2ytf_A Zinc finger protein 268 64.6 2.2 7.6E-05 21.3 0.8 11 24-34 10-20 (46)
113 2enf_A Zinc finger protein 347 63.9 2.5 8.5E-05 21.1 1.0 11 24-34 10-20 (46)
114 2jne_A Hypothetical protein YF 63.8 6.8 0.00023 25.6 3.2 29 27-63 33-61 (101)
115 2emb_A Zinc finger protein 473 63.6 2.5 8.5E-05 20.9 0.9 11 24-34 10-20 (44)
116 2epv_A Zinc finger protein 268 63.6 2.4 8.1E-05 21.2 0.8 11 24-34 10-20 (44)
117 2eoy_A Zinc finger protein 473 63.6 2.4 8.2E-05 21.3 0.9 11 24-34 10-20 (46)
118 2emj_A Zinc finger protein 28 63.4 2.3 8E-05 21.3 0.8 11 24-34 10-20 (46)
119 2epc_A Zinc finger protein 32; 63.2 2.5 8.5E-05 20.6 0.9 11 24-34 9-19 (42)
120 2ep3_A Zinc finger protein 484 63.1 2.4 8.4E-05 21.2 0.8 11 24-34 10-20 (46)
121 2yts_A Zinc finger protein 484 63.0 2.5 8.4E-05 21.1 0.8 11 24-34 10-20 (46)
122 2emi_A Zinc finger protein 484 63.0 2.5 8.4E-05 21.2 0.8 11 24-34 10-20 (46)
123 2eoj_A Zinc finger protein 268 63.0 2.1 7.1E-05 21.2 0.5 11 24-34 10-20 (44)
124 2yth_A Zinc finger protein 224 62.9 2.8 9.5E-05 21.0 1.0 11 24-34 10-20 (46)
125 2eov_A Zinc finger protein 484 62.8 2.7 9.2E-05 20.9 1.0 11 24-34 10-20 (46)
126 2emg_A Zinc finger protein 484 62.7 2.8 9.7E-05 20.9 1.0 11 24-34 10-20 (46)
127 2yti_A Zinc finger protein 347 62.5 2.7 9.1E-05 21.0 0.9 11 24-34 10-20 (46)
128 2epr_A POZ-, at HOOK-, and zin 62.3 2.9 0.0001 21.3 1.1 10 24-33 38-47 (48)
129 2eoq_A Zinc finger protein 224 62.3 2.7 9.3E-05 21.0 0.9 11 24-34 10-20 (46)
130 2eoz_A Zinc finger protein 473 62.2 2.2 7.4E-05 21.5 0.5 11 24-34 10-20 (46)
131 2eop_A Zinc finger protein 268 62.1 3 0.0001 20.8 1.0 11 24-34 10-20 (46)
132 2em3_A Zinc finger protein 28 62.1 2.6 8.9E-05 21.1 0.8 11 24-34 10-20 (46)
133 2eq2_A Zinc finger protein 347 61.9 2.9 9.8E-05 20.9 1.0 12 24-35 10-21 (46)
134 2emh_A Zinc finger protein 484 61.9 2.8 9.5E-05 20.9 0.9 11 24-34 10-20 (46)
135 2enh_A Zinc finger protein 28 61.9 3.3 0.00011 20.7 1.2 11 24-34 10-20 (46)
136 2ytj_A Zinc finger protein 484 61.8 2.7 9.1E-05 21.0 0.8 11 24-34 10-20 (46)
137 2ytn_A Zinc finger protein 347 61.7 3 0.0001 20.8 1.1 11 24-34 10-20 (46)
138 2eon_A ZFP-95, zinc finger pro 61.7 3.1 0.00011 20.9 1.1 11 24-34 10-20 (46)
139 2yto_A Zinc finger protein 484 61.7 2.7 9.2E-05 21.1 0.8 11 24-34 10-20 (46)
140 2ep1_A Zinc finger protein 484 61.5 2.8 9.6E-05 20.9 0.9 11 24-34 10-20 (46)
141 2au3_A DNA primase; zinc ribbo 61.2 5.2 0.00018 30.5 2.7 30 26-59 34-64 (407)
142 2eq4_A Zinc finger protein 224 61.2 2.9 9.8E-05 20.8 0.9 11 24-34 10-20 (46)
143 2em4_A Zinc finger protein 28 61.2 2.8 9.6E-05 21.0 0.9 11 24-34 10-20 (46)
144 2epw_A Zinc finger protein 268 61.1 2.8 9.6E-05 20.9 0.8 11 24-34 10-20 (46)
145 2yrj_A Zinc finger protein 473 61.1 2.8 9.6E-05 20.9 0.8 11 24-34 10-20 (46)
146 2em0_A Zinc finger protein 224 60.9 2.9 0.0001 20.9 0.9 11 24-34 10-20 (46)
147 2eme_A Zinc finger protein 473 60.9 2.8 9.7E-05 20.8 0.8 11 24-34 10-20 (46)
148 2eoh_A Zinc finger protein 28 60.9 3.2 0.00011 20.8 1.1 11 24-34 10-20 (46)
149 2ytp_A Zinc finger protein 484 60.9 2.8 9.7E-05 21.0 0.8 11 24-34 10-20 (46)
150 2epu_A Zinc finger protein 32; 60.8 2.4 8.1E-05 21.2 0.5 11 24-34 10-20 (45)
151 2eq3_A Zinc finger protein 347 60.8 2.4 8.2E-05 21.1 0.5 11 24-34 10-20 (46)
152 1x3c_A Zinc finger protein 292 60.8 9.5 0.00033 23.5 3.4 15 21-35 22-38 (73)
153 2emz_A ZFP-95, zinc finger pro 60.7 3 0.0001 20.9 0.9 12 23-34 9-20 (46)
154 2ely_A Zinc finger protein 224 60.7 3.1 0.00011 20.8 1.0 11 24-34 10-20 (46)
155 2em9_A Zinc finger protein 224 60.7 2.9 9.8E-05 20.8 0.8 11 24-34 10-20 (46)
156 2ene_A Zinc finger protein 347 60.6 2.9 0.0001 20.9 0.9 11 24-34 10-20 (46)
157 2emk_A Zinc finger protein 28 60.5 3.2 0.00011 20.8 1.0 11 24-34 10-20 (46)
158 2eml_A Zinc finger protein 28 60.3 2.9 0.0001 20.9 0.8 11 24-34 10-20 (46)
159 2epz_A Zinc finger protein 28 60.2 3.4 0.00012 20.6 1.1 12 24-35 10-21 (46)
160 2en9_A Zinc finger protein 28 60.1 3.4 0.00012 20.7 1.1 11 24-34 10-20 (46)
161 2em2_A Zinc finger protein 28 60.0 3 0.0001 20.9 0.8 11 24-34 10-20 (46)
162 2ep2_A Zinc finger protein 484 59.9 3 0.0001 20.8 0.8 11 24-34 10-20 (46)
163 4e2x_A TCAB9; kijanose, tetron 59.7 14 0.0005 27.1 4.8 38 26-65 12-68 (416)
164 2ytg_A ZFP-95, zinc finger pro 59.7 3.2 0.00011 20.7 0.9 11 24-34 10-20 (46)
165 2eq0_A Zinc finger protein 347 59.6 3.2 0.00011 20.7 0.9 11 24-34 10-20 (46)
166 2en8_A Zinc finger protein 224 59.2 3.3 0.00011 20.6 0.9 11 24-34 10-20 (46)
167 2yrc_A Protein transport prote 59.2 2.3 8E-05 24.9 0.3 13 25-37 32-44 (59)
168 2epx_A Zinc finger protein 28 59.0 3.5 0.00012 20.5 1.0 11 24-34 10-20 (47)
169 2emy_A Zinc finger protein 268 59.0 3.2 0.00011 20.7 0.9 11 24-34 10-20 (46)
170 2ytr_A Zinc finger protein 347 59.0 3.5 0.00012 20.5 1.0 11 24-34 10-20 (46)
171 1we9_A PHD finger family prote 58.9 5.6 0.00019 22.6 2.0 44 27-78 7-51 (64)
172 2em6_A Zinc finger protein 224 58.9 3.5 0.00012 20.6 1.0 11 24-34 10-20 (46)
173 2em7_A Zinc finger protein 224 58.9 3.2 0.00011 20.7 0.8 11 24-34 10-20 (46)
174 2el4_A Zinc finger protein 268 58.7 3.2 0.00011 20.6 0.8 11 24-34 10-20 (46)
175 2eoo_A ZFP-95, zinc finger pro 58.6 3.3 0.00011 20.7 0.8 11 24-34 10-20 (46)
176 2emf_A Zinc finger protein 484 58.3 3.4 0.00012 20.7 0.9 11 24-34 10-20 (46)
177 1znf_A 31ST zinc finger from X 58.2 3.2 0.00011 17.9 0.7 7 27-33 2-8 (27)
178 2eou_A Zinc finger protein 473 58.2 3.7 0.00013 20.3 1.0 11 24-34 10-20 (44)
179 2eom_A ZFP-95, zinc finger pro 58.0 3.9 0.00013 20.5 1.1 11 24-34 10-20 (46)
180 2eor_A Zinc finger protein 224 58.0 3.6 0.00012 20.4 0.9 11 24-34 10-20 (46)
181 2ema_A Zinc finger protein 347 58.0 3.5 0.00012 20.6 0.9 11 24-34 10-20 (46)
182 3uk3_C Zinc finger protein 217 58.0 3.3 0.00011 21.4 0.8 40 24-63 2-45 (57)
183 1qxf_A GR2, 30S ribosomal prot 57.9 9.9 0.00034 23.1 3.0 31 28-63 9-39 (66)
184 4gzn_C ZFP-57, zinc finger pro 57.9 3.4 0.00012 23.3 0.9 38 24-63 2-45 (60)
185 2yu8_A Zinc finger protein 347 57.9 3.4 0.00012 20.6 0.8 11 24-34 10-20 (46)
186 1yui_A GAGA-factor; complex (D 57.7 3.6 0.00012 21.5 0.9 11 24-34 22-32 (54)
187 2ytq_A Zinc finger protein 268 57.7 3.7 0.00013 20.5 1.0 12 23-34 9-20 (46)
188 1p91_A Ribosomal RNA large sub 57.6 4.3 0.00015 27.7 1.6 24 27-58 3-26 (269)
189 2em5_A ZFP-95, zinc finger pro 57.5 3.5 0.00012 20.6 0.9 11 24-34 10-20 (46)
190 2eox_A Zinc finger protein 473 57.5 2.9 0.0001 20.6 0.5 11 24-34 10-20 (44)
191 2enc_A Zinc finger protein 224 57.4 3.5 0.00012 20.5 0.8 12 23-34 9-20 (46)
192 2elz_A Zinc finger protein 224 57.4 3.8 0.00013 20.5 1.0 12 23-34 9-20 (46)
193 2drp_A Protein (tramtrack DNA- 57.2 3.6 0.00012 22.0 0.9 11 24-34 38-48 (66)
194 2em8_A Zinc finger protein 224 57.1 3.6 0.00012 20.6 0.8 11 24-34 10-20 (46)
195 2emp_A Zinc finger protein 347 57.0 3.6 0.00012 20.5 0.8 11 24-34 10-20 (46)
196 2ytt_A Zinc finger protein 473 56.7 4.2 0.00014 20.3 1.1 12 23-34 9-20 (46)
197 2emx_A Zinc finger protein 268 56.4 3.7 0.00012 20.3 0.8 11 24-34 8-18 (44)
198 2ytk_A Zinc finger protein 347 56.4 3.8 0.00013 20.4 0.9 11 24-34 10-20 (46)
199 2ytm_A Zinc finger protein 28 56.4 3.8 0.00013 20.5 0.9 11 24-34 10-20 (46)
200 2el6_A Zinc finger protein 268 56.2 3.7 0.00013 20.5 0.8 12 23-34 9-20 (46)
201 2emm_A ZFP-95, zinc finger pro 56.2 3.8 0.00013 20.3 0.8 11 24-34 10-20 (46)
202 3u5c_f 40S ribosomal protein S 55.9 6.1 0.00021 26.7 2.1 31 27-63 119-151 (152)
203 2yrm_A B-cell lymphoma 6 prote 55.8 4.4 0.00015 20.1 1.0 11 24-34 8-18 (43)
204 3iuf_A Zinc finger protein UBI 55.7 4.1 0.00014 21.0 0.9 11 24-34 5-15 (48)
205 2ytd_A Zinc finger protein 473 55.5 4 0.00014 20.3 0.8 11 24-34 10-20 (46)
206 2ysp_A Zinc finger protein 224 55.3 3.4 0.00011 20.6 0.5 11 24-34 10-20 (46)
207 2e2z_A TIM15; protein import, 54.9 9.6 0.00033 24.8 2.8 40 21-62 8-50 (100)
208 2adr_A ADR1; transcription reg 54.2 4.5 0.00015 21.2 0.9 11 24-34 28-38 (60)
209 3mjh_B Early endosome antigen 54.1 3.5 0.00012 21.9 0.5 9 26-34 5-13 (34)
210 3u5c_b RP61, YS20, 40S ribosom 53.7 9.1 0.00031 24.1 2.4 40 18-62 23-65 (82)
211 2ep0_A Zinc finger protein 28 53.4 4.9 0.00017 20.0 1.0 12 23-34 9-20 (46)
212 2yso_A ZFP-95, zinc finger pro 53.4 4.7 0.00016 20.0 0.9 11 24-34 10-20 (46)
213 3cng_A Nudix hydrolase; struct 53.2 6 0.0002 26.2 1.7 27 29-57 6-32 (189)
214 3cw2_K Translation initiation 53.1 0.88 3E-05 31.0 -2.6 35 23-60 100-134 (139)
215 2en6_A Zinc finger protein 268 52.8 3.9 0.00014 20.3 0.5 11 24-34 10-20 (46)
216 2en1_A Zinc finger protein 224 52.5 4 0.00014 20.3 0.5 11 24-34 10-20 (46)
217 2eoe_A Zinc finger protein 347 52.5 4 0.00014 20.2 0.5 11 24-34 10-20 (46)
218 1bbo_A Human enhancer-binding 52.4 4.6 0.00016 20.8 0.8 11 24-34 27-37 (57)
219 1y07_A Desulfoferrodoxin (RBO) 52.3 5.7 0.00019 26.3 1.4 33 24-63 5-38 (128)
220 2qkd_A Zinc finger protein ZPR 51.0 21 0.00071 28.0 4.6 37 24-60 218-259 (404)
221 1l8d_A DNA double-strand break 51.0 4.2 0.00014 25.4 0.5 8 28-35 49-56 (112)
222 1t1h_A Gspef-atpub14, armadill 50.8 5.3 0.00018 22.8 1.0 16 21-36 3-18 (78)
223 2jrp_A Putative cytoplasmic pr 50.7 12 0.00043 23.3 2.7 8 28-35 4-11 (81)
224 2k5r_A Uncharacterized protein 50.4 8.8 0.0003 24.6 2.0 20 48-67 51-72 (97)
225 2xzm_9 RPS31E; ribosome, trans 49.8 6.6 0.00022 27.8 1.5 29 28-62 115-143 (189)
226 2eps_A POZ-, at HOOK-, and zin 49.4 6.4 0.00022 20.5 1.1 11 24-34 39-49 (54)
227 2ct1_A Transcriptional repress 49.1 5.8 0.0002 22.0 0.9 40 23-62 12-57 (77)
228 1f2i_G Fusion of N-terminal 17 49.1 5.9 0.0002 21.6 0.9 7 27-33 50-56 (73)
229 1x0t_A Ribonuclease P protein 48.3 31 0.0011 22.3 4.5 41 25-65 64-109 (120)
230 1x6e_A Zinc finger protein 24; 48.2 5.9 0.0002 21.7 0.8 42 22-63 10-55 (72)
231 1lko_A Rubrerythrin all-iron(I 46.9 7 0.00024 27.0 1.2 9 26-34 155-163 (191)
232 1zfd_A SWI5; DNA binding motif 46.0 8.5 0.00029 17.3 1.1 10 25-34 2-13 (32)
233 2d9h_A Zinc finger protein 692 45.4 6.9 0.00024 21.6 0.8 39 24-62 5-50 (78)
234 3hpw_C Protein CCDA; alpha+bet 45.2 6.6 0.00023 21.0 0.7 12 69-80 14-25 (36)
235 3iz6_X 40S ribosomal protein S 44.2 7.9 0.00027 24.6 1.0 35 21-60 28-65 (86)
236 4ayb_P DNA-directed RNA polyme 44.1 2.1 7.3E-05 24.6 -1.5 38 25-66 2-39 (48)
237 2eln_A Zinc finger protein 406 43.8 8 0.00027 19.8 0.9 11 24-34 7-19 (38)
238 1llm_C Chimera of ZIF23-GCN4; 43.8 7.8 0.00027 22.0 0.9 40 24-63 1-44 (88)
239 1yop_A KTI11P; zinc finger, me 43.1 7.2 0.00025 24.4 0.7 34 26-62 23-57 (83)
240 1x5w_A Zinc finger protein 64, 42.5 7.9 0.00027 20.9 0.8 40 24-63 7-50 (70)
241 1sp2_A SP1F2; zinc finger, tra 41.8 9.9 0.00034 16.9 1.0 9 26-34 2-12 (31)
242 2l6l_A DNAJ homolog subfamily 41.4 13 0.00043 24.5 1.8 32 26-62 112-145 (155)
243 2k3r_A Ribonuclease P protein 41.4 45 0.0015 21.7 4.5 41 25-65 59-104 (123)
244 1yuz_A Nigerythrin; rubrythrin 41.1 8.2 0.00028 27.1 0.8 11 27-37 187-197 (202)
245 2lv2_A Insulinoma-associated p 41.1 8.8 0.0003 23.0 0.9 8 26-33 56-63 (85)
246 3eqt_A ATP-dependent RNA helic 40.8 14 0.00047 25.4 1.9 21 47-67 66-88 (145)
247 4dvc_A Thiol:disulfide interch 40.8 2.8 9.6E-05 26.8 -1.5 9 26-34 30-38 (184)
248 4ap4_A E3 ubiquitin ligase RNF 40.5 2.8 9.5E-05 25.9 -1.5 36 27-62 49-84 (133)
249 1wjv_A Cell growth regulating 40.5 19 0.00064 22.5 2.4 31 26-62 10-49 (79)
250 2gli_A Protein (five-finger GL 40.4 11 0.00037 23.2 1.3 10 24-33 32-41 (155)
251 2kmk_A Zinc finger protein GFI 39.9 9.6 0.00033 20.8 0.9 10 25-34 56-65 (82)
252 1va1_A Transcription factor SP 39.6 11 0.00037 17.8 0.9 11 24-34 6-18 (37)
253 2lce_A B-cell lymphoma 6 prote 39.6 10 0.00036 20.7 1.0 42 22-63 13-58 (74)
254 2cot_A Zinc finger protein 435 39.4 10 0.00036 20.8 1.0 41 22-62 14-58 (77)
255 2l43_A N-teminal domain from h 38.7 54 0.0018 19.9 4.3 35 22-63 21-55 (88)
256 1x6h_A Transcriptional repress 38.4 10 0.00034 21.0 0.8 40 23-62 12-59 (86)
257 2jz8_A Uncharacterized protein 38.2 14 0.00046 23.5 1.4 35 24-63 22-61 (87)
258 2e72_A POGO transposable eleme 38.2 12 0.0004 21.6 1.0 11 25-35 11-21 (49)
259 2jvx_A NF-kappa-B essential mo 37.7 12 0.00042 18.9 1.0 10 25-34 2-11 (28)
260 2jrr_A Uncharacterized protein 37.4 18 0.00061 21.8 1.9 28 33-63 26-53 (67)
261 2dlk_A Novel protein; ZF-C2H2 37.4 11 0.00039 20.5 0.9 11 24-34 66-76 (79)
262 2epp_A POZ-, at HOOK-, and zin 37.0 13 0.00044 21.5 1.1 13 23-35 10-22 (66)
263 1ltl_A DNA replication initiat 36.9 8.5 0.00029 27.9 0.4 33 25-59 133-165 (279)
264 2ebt_A Krueppel-like factor 5; 36.9 12 0.0004 21.3 1.0 11 24-34 73-83 (100)
265 2qkd_A Zinc finger protein ZPR 36.5 35 0.0012 26.8 3.8 34 27-61 13-52 (404)
266 2c2l_A CHIP, carboxy terminus 36.2 15 0.00051 25.3 1.5 17 19-35 201-217 (281)
267 1bhi_A CRE-BP1, ATF-2; CRE bin 36.1 13 0.00046 17.3 1.0 10 25-34 5-16 (38)
268 3q87_A Putative uncharacterize 35.4 17 0.00059 24.2 1.7 16 48-63 97-112 (125)
269 2yt9_A Zinc finger-containing 35.4 13 0.00045 20.9 1.0 11 24-34 63-73 (95)
270 2eod_A TNF receptor-associated 34.6 13 0.00043 20.0 0.8 37 24-63 8-50 (66)
271 1a1h_A QGSR zinc finger peptid 34.6 13 0.00046 20.6 0.9 9 26-34 62-70 (90)
272 1zso_A Hypothetical protein; s 34.6 18 0.00062 25.0 1.8 36 22-57 66-113 (164)
273 2k5c_A Uncharacterized protein 34.0 20 0.00069 22.9 1.8 26 49-74 50-75 (95)
274 2dmd_A Zinc finger protein 64, 33.7 14 0.00047 20.9 0.9 39 24-62 6-48 (96)
275 2zkr_2 60S ribosomal protein L 33.1 13 0.00046 24.0 0.8 26 24-58 14-39 (97)
276 2ctu_A Zinc finger protein 483 32.9 14 0.00048 19.6 0.8 38 23-63 15-52 (73)
277 2gqj_A Zinc finger protein KIA 32.7 15 0.00052 21.4 1.0 41 22-62 20-66 (98)
278 2ysl_A Tripartite motif-contai 32.7 11 0.00037 21.0 0.3 19 18-36 12-30 (73)
279 1cyx_A CYOA; electron transpor 32.6 14 0.00048 26.5 0.9 50 33-83 78-130 (205)
280 2avu_E Flagellar transcription 32.6 15 0.00051 26.2 1.0 13 23-35 151-163 (192)
281 2dmi_A Teashirt homolog 3; zin 32.5 15 0.00052 21.6 1.0 11 24-34 78-88 (115)
282 2ee8_A Protein ODD-skipped-rel 31.9 23 0.00077 20.4 1.7 41 22-62 13-57 (106)
283 2ab3_A ZNF29; zinc finger prot 31.8 13 0.00045 15.8 0.5 6 55-60 9-14 (29)
284 3sgi_A DNA ligase; HET: DNA AM 31.4 10 0.00034 31.4 0.0 32 26-63 415-450 (615)
285 3eyy_A Putative iron uptake re 31.1 21 0.00072 23.2 1.6 20 48-67 88-107 (145)
286 1k3x_A Endonuclease VIII; hydr 31.0 56 0.0019 23.5 4.0 26 28-57 236-261 (262)
287 2ent_A Krueppel-like factor 15 30.9 18 0.0006 17.8 0.9 9 24-32 40-48 (48)
288 1k82_A Formamidopyrimidine-DNA 30.7 57 0.002 23.6 4.0 26 28-57 242-267 (268)
289 2xzf_A Formamidopyrimidine-DNA 30.2 59 0.002 23.5 4.0 27 28-58 244-270 (271)
290 2dlq_A GLI-kruppel family memb 29.7 18 0.00063 21.1 1.0 10 51-60 67-76 (124)
291 3u6p_A Formamidopyrimidine-DNA 29.1 63 0.0022 23.5 4.0 26 28-57 247-272 (273)
292 2k16_A Transcription initiatio 29.1 14 0.00049 21.5 0.4 32 23-63 15-46 (75)
293 2csh_A Zinc finger protein 297 29.0 18 0.00061 21.1 0.8 10 25-34 64-73 (110)
294 2kr4_A Ubiquitin conjugation f 29.0 24 0.00082 20.9 1.4 15 21-35 9-23 (85)
295 3mhs_C SAGA-associated factor 28.5 25 0.00084 22.8 1.5 13 22-34 66-78 (99)
296 1wgm_A Ubiquitin conjugation f 28.0 25 0.00087 21.5 1.5 15 20-34 16-30 (98)
297 1ee8_A MUTM (FPG) protein; bet 28.0 37 0.0013 24.6 2.6 27 28-58 237-263 (266)
298 1dvp_A HRS, hepatocyte growth 27.6 27 0.00091 24.3 1.7 28 27-62 162-189 (220)
299 2kre_A Ubiquitin conjugation f 27.0 28 0.00094 21.4 1.5 16 20-35 23-38 (100)
300 2kdx_A HYPA, hydrogenase/ureas 27.0 23 0.0008 22.4 1.2 30 22-59 69-99 (119)
301 2zjr_Z 50S ribosomal protein L 26.8 21 0.00072 20.8 0.9 26 22-58 26-51 (60)
302 3gn3_A Putative protein-disulf 26.6 6.8 0.00023 26.4 -1.5 9 26-34 23-31 (182)
303 3alr_A Nanos protein; zinc-fin 26.5 24 0.00082 23.2 1.2 15 22-36 67-81 (106)
304 3ga3_A Interferon-induced heli 26.3 32 0.0011 23.2 1.8 21 47-68 64-86 (133)
305 2gsm_B Cytochrome C oxidase su 26.1 22 0.00074 26.0 1.0 46 34-80 209-256 (262)
306 3hct_A TNF receptor-associated 25.9 15 0.00053 22.7 0.2 18 19-36 11-28 (118)
307 2aze_B Transcription factor E2 25.8 19 0.00066 23.1 0.6 17 58-74 85-101 (106)
308 1ncs_A Peptide M30F, transcrip 25.4 24 0.00083 17.6 0.9 11 24-34 16-28 (47)
309 1wjp_A Zinc finger protein 295 25.2 25 0.00087 20.4 1.1 41 22-62 12-54 (107)
310 2wbt_A B-129; zinc finger; 2.7 25.1 25 0.00086 21.1 1.1 11 24-34 98-108 (129)
311 2j6a_A Protein TRM112; transla 25.1 49 0.0017 22.4 2.6 20 48-67 107-128 (141)
312 1x6f_A Zinc finger protein 462 24.8 24 0.00081 20.9 0.8 12 23-34 22-33 (88)
313 3hb3_B Cytochrome C oxidase su 24.6 33 0.0011 25.7 1.8 51 33-84 226-278 (298)
314 2d9k_A FLN29 gene product; zin 23.9 25 0.00087 19.9 0.8 38 21-61 12-54 (75)
315 2lt7_A Transcriptional regulat 23.9 16 0.00054 23.2 -0.1 37 24-62 20-62 (133)
316 3axs_A Probable N(2),N(2)-dime 23.8 57 0.0019 24.9 3.0 54 20-83 238-295 (392)
317 2fe3_A Peroxide operon regulat 23.7 37 0.0013 21.8 1.7 20 48-67 91-110 (145)
318 2ctd_A Zinc finger protein 512 23.6 26 0.0009 20.7 0.9 10 25-34 61-70 (96)
319 1v54_F VI, cytochrome C oxidas 23.6 66 0.0023 20.4 2.9 24 38-64 70-93 (98)
320 1wfe_A Riken cDNA 2310008M20 p 23.4 46 0.0016 20.6 2.0 31 22-63 21-53 (86)
321 1v54_B Cytochrome C oxidase po 23.3 20 0.00067 25.7 0.3 46 34-80 178-225 (227)
322 2kgg_A Histone demethylase jar 23.2 46 0.0016 18.1 1.8 36 28-71 4-40 (52)
323 2ghf_A ZHX1, zinc fingers and 23.2 26 0.00089 21.5 0.8 40 24-63 16-63 (102)
324 2vpb_A Hpygo1, pygopus homolog 23.1 24 0.00081 20.5 0.6 38 24-69 6-44 (65)
325 2i5o_A DNA polymerase ETA; zin 23.0 27 0.00091 18.8 0.8 10 25-34 8-17 (39)
326 1m2o_A SEC23, protein transpor 22.8 27 0.00091 29.0 1.0 15 25-39 76-90 (768)
327 2epa_A Krueppel-like factor 10 22.8 31 0.001 18.5 1.0 9 25-33 46-56 (72)
328 1fft_B Ubiquinol oxidase; elec 22.7 39 0.0013 25.5 1.9 51 33-84 188-241 (315)
329 3gmf_A Protein-disulfide isome 22.2 9.4 0.00032 26.2 -1.5 10 25-34 23-32 (205)
330 3na7_A HP0958; flagellar bioge 22.1 28 0.00097 24.7 1.0 11 24-34 220-230 (256)
331 2jp9_A Wilms tumor 1; DNA bind 22.0 30 0.001 20.1 0.9 38 24-63 64-109 (119)
332 1vk6_A NADH pyrophosphatase; 1 21.8 36 0.0012 24.5 1.5 28 27-60 108-135 (269)
333 3vhs_A ATPase wrnip1; zinc fin 21.8 31 0.0011 17.5 0.8 9 26-34 6-14 (29)
334 3gha_A Disulfide bond formatio 21.6 9.8 0.00033 25.8 -1.5 10 25-34 37-46 (202)
335 2lkl_A Erythrocyte membrane pr 21.5 43 0.0015 20.9 1.6 17 64-80 40-56 (81)
336 2lcq_A Putative toxin VAPC6; P 20.8 32 0.0011 22.6 0.9 8 28-35 150-157 (165)
337 1x0g_A ISCA; [2Fe-2S], biosynt 20.5 39 0.0013 21.0 1.3 13 50-63 98-110 (112)
338 2ys3_A UNC-112-related protein 20.4 43 0.0015 22.6 1.6 14 72-85 98-111 (137)
339 3d00_A Tungsten formylmethanof 20.4 26 0.0009 24.4 0.5 14 48-61 161-174 (191)
340 2nut_A Protein transport prote 20.3 25 0.00084 29.3 0.3 14 25-38 85-98 (769)
341 2znm_A Thiol:disulfide interch 20.1 33 0.0011 22.1 0.9 12 25-36 30-41 (195)
342 1joc_A EEA1, early endosomal a 20.1 22 0.00074 23.1 -0.0 42 25-74 68-116 (125)
No 1
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=100.00 E-value=3.7e-45 Score=237.97 Aligned_cols=82 Identities=39% Similarity=0.786 Sum_probs=73.7
Q ss_pred CccccccccCCCcccccC-CCCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhhhHHH
Q 035653 2 GKRKSRKAKAVGVKKTKG-MEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWIDE 80 (87)
Q Consensus 2 GkRK~k~k~~~~~~~kk~-~~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~wiD~ 80 (87)
||||+++++++ |++ .++|||.|+||||||++||+|+||++.++|+|+|++||++|+++|++|+|||||||+|||+
T Consensus 2 ~rRKs~~k~~~----k~k~~~~L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epiDVYs~WiDa 77 (85)
T 1wii_A 2 SSGSSGRKPPP----KKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDA 77 (85)
T ss_dssp CCCCCCCCCCC----CCCCCCCCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCTTHHHHHHHHH
T ss_pred CCccccCCCCC----CcccCCCCCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcchhhHHHHHHH
Confidence 45555556665 444 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC
Q 035653 81 CERANNS 87 (87)
Q Consensus 81 ~e~~n~~ 87 (87)
||++|+.
T Consensus 78 c~~~~~~ 84 (85)
T 1wii_A 78 CESGPSS 84 (85)
T ss_dssp HHHCCCC
T ss_pred HHHHhhc
Confidence 9999963
No 2
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.24 E-value=0.0025 Score=40.46 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhh
Q 035653 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIY 74 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVY 74 (87)
....|.|||||.+. -+....|+..|..||..|.--.-.++.|.-+.
T Consensus 24 q~~~y~Cp~CG~~~------v~r~atGiW~C~~Cg~~~aggay~~~t~~~~~ 69 (83)
T 1vq8_Z 24 MNEDHACPNCGEDR------VDRQGTGIWQCSYCDYKFTGGSYKPETPGGKT 69 (83)
T ss_dssp HHSCEECSSSCCEE------EEEEETTEEEETTTCCEEECCSSSSSCHHHHH
T ss_pred ccccCcCCCCCCcc------eeccCCCeEECCCCCCEecCCEecccchHHHH
Confidence 35689999999731 12334689999999999988755556665544
No 3
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=95.85 E-value=0.0039 Score=35.16 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=24.8
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
..+.||.|+.. .+..|.. .|.+.|..||+.|...
T Consensus 4 ~~~~CP~C~~~---~l~~d~~--~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 4 KQKVCPACESA---ELIYDPE--RGEIVCAKCGYVIEEN 37 (50)
T ss_dssp SCCSCTTTSCC---CEEEETT--TTEEEESSSCCBCCCC
T ss_pred ccEeCcCCCCc---ceEEcCC--CCeEECcccCCccccc
Confidence 45789999984 2444544 4779999999988653
No 4
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=95.68 E-value=0.0098 Score=37.09 Aligned_cols=38 Identities=18% Similarity=0.493 Sum_probs=27.8
Q ss_pred CCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeec
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQI 64 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i 64 (87)
......+.|||||.. +|. ...+|+-.|+.|+..|.--.
T Consensus 22 ~~q~~ky~C~fCgk~-~vk-----R~a~GIW~C~~C~~~~AGGA 59 (73)
T 1ffk_W 22 IKHKKKYKCPVCGFP-KLK-----RASTSIWVCGHCGYKIAGGA 59 (73)
T ss_pred HhcccCccCCCCCCc-eeE-----EEEeEEEECCCCCcEEECCC
Confidence 344678999999973 232 24579999999999986553
No 5
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=95.61 E-value=0.0067 Score=39.45 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=35.8
Q ss_pred CccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhh-hHHHHHHh
Q 035653 24 DTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAE-WIDECERA 84 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~-wiD~~e~~ 84 (87)
-..+.|||||... | .+ ..+|+-.|+.|+..|.--.-.++.|.-+.-. =|..+.|.
T Consensus 34 ~~ky~CpfCgk~~---v--kR-~a~GIW~C~~Cg~~~AGGAy~~~T~~~~tv~~~irrl~e~ 89 (92)
T 3iz5_m 34 HSKYFCEFCGKFA---V--KR-KAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQ 89 (92)
T ss_dssp HSCBCCTTTCSSC---B--EE-EETTEEECSSSCCEEECCSSSSCCHHHHHHHHHHHHHHHH
T ss_pred hccccCcccCCCe---e--Ee-cCcceEEcCCCCCEEeCCcccCCCcHHHHHHHHHHHHHHh
Confidence 3578999999853 2 22 4578999999999998765555555444322 34444433
No 6
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.59 E-value=0.0063 Score=38.91 Aligned_cols=40 Identities=25% Similarity=0.578 Sum_probs=29.0
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCch
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEP 70 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~ep 70 (87)
..+.|||||... |.+ ..+|+-.|+.|+..|.--.-.++.|
T Consensus 34 ~ky~CpfCGk~~-----vkR-~a~GIW~C~kCg~~~AGGAy~~~T~ 73 (83)
T 3j21_i 34 QKHTCPVCGRKA-----VKR-ISTGIWQCQKCGATFAGGAYLPVTP 73 (83)
T ss_dssp SCBCCSSSCSSC-----EEE-EETTEEEETTTCCEEECCSSSSSCH
T ss_pred cccCCCCCCCce-----eEe-cCcCeEEcCCCCCEEeCCccccCcc
Confidence 478999999853 222 4578999999999987654444444
No 7
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=95.45 E-value=0.0064 Score=39.55 Aligned_cols=43 Identities=19% Similarity=0.470 Sum_probs=31.1
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhh
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDI 73 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDV 73 (87)
..+.|||||... |.+ ..+|+-.|+.|+..|.--.-.++.|.-+
T Consensus 35 ~ky~CpfCgk~~-----vkR-~a~GIW~C~~C~~~~AGGAy~~~T~~~~ 77 (92)
T 3izc_m 35 ARYDCSFCGKKT-----VKR-GAAGIWTCSCCKKTVAGGAYTVSTAAAA 77 (92)
T ss_dssp SCCCCSSSCSSC-----CEE-EETTEEECTTTCCEEECCSSSSCCHHHH
T ss_pred cCCcCCCCCCce-----eee-cccceEEcCCCCCEEeCCcccCCCcHHH
Confidence 678999999753 222 4578999999999998765555555443
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=95.15 E-value=0.0071 Score=35.68 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=30.5
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhhh
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEW 77 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~w 77 (87)
+|-..-.||.|+..+ +..| ...|.+.|..||+.++.. .||.=.+|
T Consensus 7 ~ll~~~~Cp~C~~~~---lv~D--~~~ge~vC~~CGlVl~e~------~iD~gpEW 51 (58)
T 1dl6_A 7 DALPRVTCPNHPDAI---LVED--YRAGDMICPECGLVVGDR------VIDVGSEW 51 (58)
T ss_dssp CCCSCCSBTTBSSSC---CEEC--SSSCCEECTTTCCEECCS------CCCCCCSC
T ss_pred hccccccCcCCCCCc---eeEe--CCCCeEEeCCCCCEEecc------ccccCCcc
Confidence 455555799999865 2334 445789999999987653 45555555
No 9
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=95.13 E-value=0.0049 Score=38.47 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=28.6
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCch
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEP 70 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~ep 70 (87)
..+.|||||... |.+ ..+|+-.|+.|+..|.--.-.++.|
T Consensus 25 ~ky~C~fCgk~~-----vkR-~a~GIW~C~~C~~~~AGGAy~~~T~ 64 (72)
T 3jyw_9 25 ARYDCSFCGKKT-----VKR-GAAGIWTCSCCKKTVAGGAYTVSTA 64 (72)
T ss_dssp SCBCCSSCCSSC-----BSB-CSSSCBCCSSSCCCCCCSSSSSCCH
T ss_pred cCccCCCCCCce-----eEe-cCCCeEECCCCCCEEeCCccccCCc
Confidence 578999999853 333 5689999999999886544333333
No 10
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=95.09 E-value=0.014 Score=38.73 Aligned_cols=43 Identities=26% Similarity=0.600 Sum_probs=30.9
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhh
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDI 73 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDV 73 (87)
..+.|||||.. .| .+ ..+|+-.|+.|+..|.--.-.++.|.-+
T Consensus 35 aky~CpfCgk~---~v--KR-~a~GIW~C~kCg~~~AGGAy~~~T~~a~ 77 (103)
T 4a17_Y 35 AKYGCPFCGKV---AV--KR-AAVGIWKCKPCKKIIAGGAWELTTPPAV 77 (103)
T ss_dssp SCEECTTTCCE---EE--EE-EETTEEEETTTTEEEECCSSCSSCHHHH
T ss_pred cCCCCCCCCCc---ee--ee-cCcceEEcCCCCCEEeCCcccCCCcHHH
Confidence 67999999973 23 33 4578999999999998765555555433
No 11
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=94.42 E-value=0.014 Score=39.40 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=32.3
Q ss_pred CccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhh
Q 035653 24 DTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIY 74 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVY 74 (87)
...+.|||||.. + ++- ..+|+-.|+.|+..|.--.-.++.|.-+.
T Consensus 58 ~akytCPfCGk~-~--vKR---~avGIW~C~~Cgk~fAGGAy~~~T~~~~t 102 (116)
T 3cc2_Z 58 NEDHACPNCGED-R--VDR---QGTGIWQCSYCDYKFTGGSYKPETPGGKT 102 (116)
T ss_dssp HSCEECSSSCCE-E--EEE---EETTEEEETTTCCEEECCSSSSSCHHHHH
T ss_pred ccCCcCCCCCCc-e--eEe---cCceeEECCCCCCEEECCCcccccchhhh
Confidence 467999999973 2 222 23588999999999988766666665544
No 12
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=94.13 E-value=0.067 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=24.0
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCcccceeE
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFC 61 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~ 61 (87)
.||.|+.+.+.-+ ++++.-.+.|..||....
T Consensus 2 lC~~C~~peT~l~---~~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKII---KEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEE---EETTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEE---EeCCcEEEEhhcCCCccc
Confidence 4999999865433 356888999999998654
No 13
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=93.88 E-value=0.095 Score=31.76 Aligned_cols=35 Identities=23% Similarity=0.571 Sum_probs=23.2
Q ss_pred cCCCCCCCC----eEEEEEeccCc------EEEEEcCcccceeEe
Q 035653 28 QCPFCGHGT----SVECRIDKKIQ------IGEAFCWNCLERFCT 62 (87)
Q Consensus 28 ~CPfC~~~~----sV~v~idk~~~------~g~~~C~~C~~~~~~ 62 (87)
.||+|+... ...+.++.+.. +--..|..||+.|-+
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 699999763 33444544432 344689999998754
No 14
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=93.70 E-value=0.14 Score=29.43 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=27.2
Q ss_pred ccccCCCCCCCCeEEEEEecc----CcEEEEEcCcccceeE
Q 035653 25 TQFQCPFCGHGTSVECRIDKK----IQIGEAFCWNCLERFC 61 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~----~~~g~~~C~~C~~~~~ 61 (87)
+.+.||.|||...+--.+.-. .......|..||-.+.
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 358999999977666655431 2467789999998764
No 15
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=93.26 E-value=0.21 Score=28.58 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=28.2
Q ss_pred CccccCCCCCCCCeEEEEEecc----CcEEEEEcCcccceeE
Q 035653 24 DTQFQCPFCGHGTSVECRIDKK----IQIGEAFCWNCLERFC 61 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~----~~~g~~~C~~C~~~~~ 61 (87)
.+.+.||.|||...+-..+.-. ...-...|..||-.+.
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 3468999999999887776432 2355678999998764
No 16
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.11 E-value=0.21 Score=32.90 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=25.7
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCcccceeE
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFC 61 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~ 61 (87)
=||.||+ -+.++-++..+...+.|+.||-.+.
T Consensus 6 FCp~Cgn--lL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 6 FCRDCNN--MLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp BCSSSCC--BCEEEEETTTTEEEEECSSSSCEEE
T ss_pred cccccCc--cCcccccCcCCCCEEECCcCCCeee
Confidence 3999997 4667667667789999999997664
No 17
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=91.45 E-value=0.3 Score=31.14 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=27.3
Q ss_pred cCCCCCCCCeE----EEEEeccCc------EEEEEcCcccceeEeecCCCCchhhhhhhhHHHHH
Q 035653 28 QCPFCGHGTSV----ECRIDKKIQ------IGEAFCWNCLERFCTQIHALTEPIDIYAEWIDECE 82 (87)
Q Consensus 28 ~CPfC~~~~sV----~v~idk~~~------~g~~~C~~C~~~~~~~i~~L~epiDVYs~wiD~~e 82 (87)
.||+|+.+..+ ...++-+.. +-...|..||+.+-.. +-.+.|.+.+++..
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~-----e~~~~~~~~~~e~~ 63 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK-----EESDAFMAQVKAFR 63 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCH-----HHHHHHHHHHHHHH
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecH-----HHHHHHHHHHHHHH
Confidence 69999986432 222222322 2356899999976432 22344445554443
No 18
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=91.28 E-value=0.14 Score=31.22 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=29.6
Q ss_pred CCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee--cCCC
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ--IHAL 67 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~--i~~L 67 (87)
++|-....||.|+.+ +. ++.. .|.+.|..||..|-.. |+-|
T Consensus 3 ~~LL~iL~CP~ck~~--L~--~~~~--~~~LiC~~cg~~YPI~dGIPvm 45 (70)
T 2js4_A 3 SRLLDILVCPVCKGR--LE--FQRA--QAELVCNADRLAFPVRDGVPIM 45 (70)
T ss_dssp CCCCCCCBCTTTCCB--EE--EETT--TTEEEETTTTEEEEEETTEECC
T ss_pred hHHhhheECCCCCCc--CE--EeCC--CCEEEcCCCCceecCCCCeeee
Confidence 356678899999983 33 3333 4789999999999775 5544
No 19
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=90.18 E-value=0.36 Score=36.60 Aligned_cols=49 Identities=12% Similarity=0.314 Sum_probs=32.1
Q ss_pred cccCCCCCCCCeEEEE-Eec------cCcEEEEEcCcccceeEeecCCCCchhhhh
Q 035653 26 QFQCPFCGHGTSVECR-IDK------KIQIGEAFCWNCLERFCTQIHALTEPIDIY 74 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~-idk------~~~~g~~~C~~C~~~~~~~i~~L~epiDVY 74 (87)
...||+||+.+.++.- ++. ...+-.-.|..||-..-+--...+..+|++
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~dp~ 277 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADAL 277 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHH
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhhccCCCCCcc
Confidence 4689999998877654 343 255777899999987655433333344443
No 20
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=88.64 E-value=0.2 Score=30.52 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee--cCCC
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ--IHAL 67 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~--i~~L 67 (87)
+|-....||.|+.+ +.. +. ..+.+.|..||..|-.. |+-|
T Consensus 4 ~LLeiL~CP~ck~~--L~~--~~--~~~~LiC~~cg~~YPI~dGIPvm 45 (69)
T 2pk7_A 4 KLLDILACPICKGP--LKL--SA--DKTELISKGAGLAYPIRDGIPVM 45 (69)
T ss_dssp CGGGTCCCTTTCCC--CEE--CT--TSSEEEETTTTEEEEEETTEECC
T ss_pred HHHhheeCCCCCCc--CeE--eC--CCCEEEcCCCCcEecCcCCeeee
Confidence 45567899999974 332 32 34789999999999775 5554
No 21
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=88.60 E-value=0.23 Score=30.13 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee--cCCC
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ--IHAL 67 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~--i~~L 67 (87)
++|-....||.|..+ +.. +.. -+.+.|..||..|-.. |+-|
T Consensus 3 ~~LL~iL~CP~ck~~--L~~--~~~--~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2jr6_A 3 KKFLDILVCPVTKGR--LEY--HQD--KQELWSRQAKLAYPIKDGIPYM 45 (68)
T ss_dssp CSSSCCCBCSSSCCB--CEE--ETT--TTEEEETTTTEEEEEETTEECC
T ss_pred hHHhhheECCCCCCc--CeE--eCC--CCEEEcCCCCcEecCCCCeeee
Confidence 356677899999974 333 332 3789999999999775 5544
No 22
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=88.20 E-value=0.58 Score=35.44 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=27.3
Q ss_pred CccccCCCCCCCCeEEEEEe--ccCcEEEEEcCcccceeEe
Q 035653 24 DTQFQCPFCGHGTSVECRID--KKIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~id--k~~~~g~~~C~~C~~~~~~ 62 (87)
...=.||.||..-++++-.. ...|.-+++|..|+..+.+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee
Confidence 55668999999876664332 1356668999999887655
No 23
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=88.05 E-value=0.19 Score=30.16 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=33.4
Q ss_pred cccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhhhHHH
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWIDE 80 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~wiD~ 80 (87)
.-.||.|+. -+. .-.|..||.......++-..|-|-|++.-=.
T Consensus 6 mr~C~~Cgv---YTL---------k~~CP~CG~~T~~~hParfSp~Dky~~yR~~ 48 (60)
T 2apo_B 6 MKKCPKCGL---YTL---------KEICPKCGEKTVIPKPPKFSLEDRWGKYRRM 48 (60)
T ss_dssp CEECTTTCC---EES---------SSBCSSSCSBCBCCCCCCCCTTCTTHHHHHH
T ss_pred ceeCCCCCC---Eec---------cccCcCCCCcCCCCCCCCCCCCcchHHHHHH
Confidence 346999976 222 1259999999999999999999999986533
No 24
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=87.95 E-value=0.56 Score=35.23 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=27.3
Q ss_pred ccccCCCCCCCCeEEEEEecc----CcEEEEEcCcccceeEe
Q 035653 25 TQFQCPFCGHGTSVECRIDKK----IQIGEAFCWNCLERFCT 62 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~----~~~g~~~C~~C~~~~~~ 62 (87)
+.|.||.|||...+--.+.-. ...-...|..||..+.+
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 479999999988766555321 23456789999987653
No 25
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=87.76 E-value=0.21 Score=30.31 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=28.8
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee--cCCC
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ--IHAL 67 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~--i~~L 67 (87)
+|-....||.|..+ +.. +.. .+.+.|..||..|-.. |+-|
T Consensus 4 ~LL~iL~CP~ck~~--L~~--~~~--~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2hf1_A 4 KFLEILVCPLCKGP--LVF--DKS--KDELICKGDRLAFPIKDGIPMM 45 (68)
T ss_dssp CCEEECBCTTTCCB--CEE--ETT--TTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCc--CeE--eCC--CCEEEcCCCCcEecCCCCeeee
Confidence 45567899999974 333 322 4789999999999775 5554
No 26
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=87.75 E-value=0.26 Score=37.07 Aligned_cols=59 Identities=22% Similarity=0.545 Sum_probs=35.8
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeec--CCCCchh--hhhhhhHHHHHHhh
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQI--HALTEPI--DIYAEWIDECERAN 85 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i--~~L~epi--DVYs~wiD~~e~~n 85 (87)
..+-||.||+.. +. .+.-..-+|--.|.+|++.||-+- ..|+.-| -.|+--|+.+...|
T Consensus 33 ~n~yCPnCG~~~-l~-~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~ 95 (257)
T 4esj_A 33 RQSYCPNCGNNP-LN-HFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADN 95 (257)
T ss_dssp HHCCCTTTCCSS-CE-EC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTC
T ss_pred HCCcCCCCCChh-hh-hccCCCcccccccCCcchhheeccccCccCccccCchHHHHHHHHhccC
Confidence 346799999953 21 334456689999999999998752 2233222 25666666655443
No 27
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.55 E-value=0.35 Score=27.62 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=18.8
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 27 FQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 27 F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
--||.||+.- +.. . . .....|+.||.++
T Consensus 20 k~CP~CG~~~-fm~--~-~--~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGV-FMA--D-H--GDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSC-EEE--E-C--SSEEECSSSCCEE
T ss_pred ccCCCCCCce-EEe--c-C--CCeEECCCCCCEE
Confidence 3599999842 222 1 1 2578999999875
No 28
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=86.59 E-value=0.33 Score=29.11 Aligned_cols=43 Identities=28% Similarity=0.423 Sum_probs=32.9
Q ss_pred cccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhhhHHH
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWIDE 80 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~wiD~ 80 (87)
.-.||.||. - +. + -.|.+||+.....-++-..|-|-|++.-=.
T Consensus 5 mr~C~~Cg~-Y--TL----k-----~~CP~CG~~t~~ahParfSP~Dky~~yR~~ 47 (60)
T 2aus_D 5 IRKCPKCGR-Y--TL----K-----ETCPVCGEKTKVAHPPRFSPEDPYGEYRRR 47 (60)
T ss_dssp CEECTTTCC-E--ES----S-----SBCTTTCSBCEESSCCCCCSCCTTHHHHHH
T ss_pred ceECCCCCC-E--Ec----c-----ccCcCCCCccCCCCCCCCCCCCchHHHHHH
Confidence 346999975 1 11 1 159999999999999999999999986533
No 29
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.27 E-value=1.1 Score=31.18 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=29.0
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
..=.||.|+.+.+. +.++++..+-.+.|..||....-.
T Consensus 102 ~YVlC~~C~sPdT~-L~~~~~~r~~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 102 KFVLCPECENPETD-LHVNPKKQTIGNSCKACGYRGMLD 139 (157)
T ss_dssp HTTSCTTTCCSCCE-EEEETTTTEEEEECSSSCCEEECC
T ss_pred HeEECCCCCCCccE-EEEecCCCEEEEEccCCCCCCccc
Confidence 34579999998865 344567889999999999876543
No 30
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=85.94 E-value=0.25 Score=32.12 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 29 CPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 29 CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
||.||+- +.++.+...+.-...|+.|+-.+
T Consensus 7 Cp~Cgn~--L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 7 CIECNNM--LYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CSSSCCC--CEECCCTTTCCCCEECSSSCCEE
T ss_pred CcCCCCE--eeEcccCCCCeeEEECCCCCCeE
Confidence 9999983 66666555566789999999655
No 31
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=85.86 E-value=0.59 Score=24.76 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=20.2
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
+.-..|.|+.||+ -|++-. .+-+.++| ||+.
T Consensus 2 k~~~fY~C~~CGn--ivev~~---~g~~~l~C--CG~~ 32 (36)
T 1dxg_A 2 NEGDVYKCELCGQ--VVKVLE---EGGGTLVC--CGED 32 (36)
T ss_dssp CTTCEEECTTTCC--EEEEEE---CCSSCEEE--TTEE
T ss_pred CcccEEEcCCCCc--EEEEEe---CCCcCEEe--CCcc
Confidence 3457999999997 355543 34466677 6654
No 32
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=85.83 E-value=0.36 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=20.6
Q ss_pred cccCCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
...||.||+.--++ .......|+.||.++
T Consensus 18 ~~fCPkCG~~~~ma------~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA------EHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCE------ECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEe------ccCCEEECCCCCCEE
Confidence 67899999854222 112488999999875
No 33
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=85.28 E-value=0.59 Score=33.17 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=22.1
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
..+.||.||..+...+ +. ++ ...|.+||..
T Consensus 13 ~~~~CP~Cg~~d~~~~--~~-dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSL--FS-DG--HTFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSCEEE--ET-TS--CEEETTTCCE
T ss_pred cCCcCCCCCCCCCceE--eC-CC--CeecccCCCc
Confidence 4689999998666444 43 33 5899999975
No 34
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=84.59 E-value=0.38 Score=29.16 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=28.8
Q ss_pred CCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee--cCCC
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ--IHAL 67 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~--i~~L 67 (87)
++|-....||.|..+ +. .+. ..|.+.|..||..|-.. |+-|
T Consensus 5 ~~LLeiL~CP~ck~~--L~--~~~--~~g~LvC~~c~~~YPI~dGIPvm 47 (67)
T 2jny_A 5 PQLLEVLACPKDKGP--LR--YLE--SEQLLVNERLNLAYRIDDGIPVL 47 (67)
T ss_dssp GGGTCCCBCTTTCCB--CE--EET--TTTEEEETTTTEEEEEETTEECC
T ss_pred HHHHHHhCCCCCCCc--Ce--EeC--CCCEEEcCCCCccccCCCCEeee
Confidence 345667899999984 33 233 34789999999999775 5443
No 35
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=84.20 E-value=1.2 Score=29.17 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCC-ccccCCCCCCCCeEEEEEecc----CcEEEEEcCcccceeEee
Q 035653 22 KLD-TQFQCPFCGHGTSVECRIDKK----IQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 22 kl~-~~F~CPfC~~~~sV~v~idk~----~~~g~~~C~~C~~~~~~~ 63 (87)
.+| +.+.||.|||...+-..+... ...-...|..||-.+...
T Consensus 67 t~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 67 TLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp TSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred cccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 444 358999999998777765322 234567899999887653
No 36
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=83.85 E-value=0.93 Score=32.85 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=35.6
Q ss_pred CCCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhhhHHH
Q 035653 20 MEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWIDE 80 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~wiD~ 80 (87)
.+-|...-.||.|+... ..+..| ...|.+.|..||+-.+ +..||-=.+|.-.
T Consensus 15 ~~~ln~~~~CPECGs~~-t~IV~D--~erGE~VCsdCGLVLE------EriID~GPEWRAF 66 (197)
T 3k1f_M 15 GPNLNIVLTCPECKVYP-PKIVER--FSEGDVVCALCGLVLS------DKLVDTRSEWRTF 66 (197)
T ss_dssp SSCCCCCCCCTTTCCSS-CCEEEE--GGGTEEEETTTCBBCC------CCCBCHHHHHHHH
T ss_pred ccccccCeECcCCCCcC-CeEEEe--CCCCEEEEcCCCCCcC------CceeECCCCCcCc
Confidence 45666666899999832 223334 4458999999998543 3568888888743
No 37
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=83.67 E-value=1.7 Score=27.48 Aligned_cols=41 Identities=15% Similarity=0.504 Sum_probs=29.3
Q ss_pred ccCCCCCCccc---cCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEe
Q 035653 17 TKGMEKLDTQF---QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 17 kk~~~kl~~~F---~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~ 62 (87)
++-++...+.| .||-|++ +++.++.. .-.+.|.+||.....
T Consensus 20 k~Lv~~PnS~Fm~VkCp~C~n---~q~VFShA--~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 20 KRLIQAPNSYFMDVKCAQCQN---IQMIFSNA--QSTIICEKCSAILCK 63 (81)
T ss_dssp TSSSCCCSCCEEEEECSSSCC---EEEEETTC--SSCEECSSSCCEEEE
T ss_pred eeeeeCCCCcEEEeECCCCCC---eeEEEecC--ccEEEccCCCCEEee
Confidence 34455667889 9999998 55556544 356899999986544
No 38
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=83.06 E-value=0.7 Score=29.96 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=26.5
Q ss_pred CCCC-ccccCCCCCCCCeEEEEEecc----CcEEEEEcCccccee
Q 035653 21 EKLD-TQFQCPFCGHGTSVECRIDKK----IQIGEAFCWNCLERF 60 (87)
Q Consensus 21 ~kl~-~~F~CPfC~~~~sV~v~idk~----~~~g~~~C~~C~~~~ 60 (87)
+.|| +.+.||.|||..++-..+... ...-...|..||-.+
T Consensus 66 ~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 66 PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred ccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 3455 459999999988766544321 124457899998765
No 39
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=83.01 E-value=0.46 Score=26.89 Aligned_cols=16 Identities=31% Similarity=0.899 Sum_probs=13.5
Q ss_pred CCCccccCCCCCCCCe
Q 035653 22 KLDTQFQCPFCGHGTS 37 (87)
Q Consensus 22 kl~~~F~CPfC~~~~s 37 (87)
.||-.|.||.||+.++
T Consensus 26 ~lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 26 QLPDDWCCPVCGVSKD 41 (46)
T ss_dssp GSCTTCBCTTTCCBGG
T ss_pred hCCCCCcCcCCCCcHH
Confidence 6788899999999764
No 40
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=82.86 E-value=1.5 Score=26.78 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=31.2
Q ss_pred cccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee-cCCCCchhhhhhhhHHHHHH
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ-IHALTEPIDIYAEWIDECER 83 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~-i~~L~epiDVYs~wiD~~e~ 83 (87)
+|-|| |+.- .+. +.+.....|. ||...+.. ..-+.+ +|=+.+=.+...+
T Consensus 4 vv~C~-C~~~---~~~---~~~~kT~~C~-CG~~~~~~k~rif~~-~~d~~eA~e~~~~ 53 (71)
T 1gh9_A 4 IFRCD-CGRA---LYS---REGAKTRKCV-CGRTVNVKDRRIFGR-ADDFEEASELVRK 53 (71)
T ss_dssp EEEET-TSCC---EEE---ETTCSEEEET-TTEEEECCSSSCBSC-CSSHHHHHHHHHH
T ss_pred EEECC-CCCE---EEE---cCCCcEEECC-CCCeeeeceEEEEEe-cCCHHHHHHHHHH
Confidence 68999 9983 222 2355678997 99999987 444433 6655554444333
No 41
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=82.09 E-value=0.77 Score=34.78 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhhhH
Q 035653 20 MEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEWI 78 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~wi 78 (87)
.+-|.-.-.||.|+... -.+..|. ..|.+.|..||+-.+. ..||.=+||-
T Consensus 15 ~~~l~~~~~Cp~C~~~~-~~lv~D~--~~G~~vC~~CGlVl~e------~~iD~g~EWR 64 (345)
T 4bbr_M 15 GPNLNIVLTCPECKVYP-PKIVERF--SEGDVVCALCGLVLSD------KLVDTRSEWR 64 (345)
T ss_dssp -------CCCSSCCCSS-CCEEEEG--GGTEEEETTTCBEEES------CCBCHHHHHT
T ss_pred CcccccCCcCCCCCCCC-CceeEEC--CCCcEEeCCCCCCccC------cccccCcccc
Confidence 45666666899999721 1233343 4589999999987654 4577777774
No 42
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=81.78 E-value=0.39 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=25.1
Q ss_pred CCccccCCCCCCCCeEEE-----EEeccCcEEEEEcCcccceeEeecC
Q 035653 23 LDTQFQCPFCGHGTSVEC-----RIDKKIQIGEAFCWNCLERFCTQIH 65 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v-----~idk~~~~g~~~C~~C~~~~~~~i~ 65 (87)
-++.|.|+.||.. ..- .+. .+.....|..||..|....+
T Consensus 11 ~~k~~~C~~C~k~--F~~~~~l~~~H--~~~k~~~C~~C~k~f~~~~~ 54 (62)
T 1vd4_A 11 NRASFKCPVCSST--FTDLEANQLFD--PMTGTFRCTFCHTEVEEDES 54 (62)
T ss_dssp SSSEEECSSSCCE--EEHHHHHHHEE--TTTTEEBCSSSCCBCEECTT
T ss_pred CCCCccCCCCCch--hccHHHhHhhc--CCCCCEECCCCCCccccCcc
Confidence 3578999999962 211 111 12234689999999987644
No 43
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=81.53 E-value=0.54 Score=27.04 Aligned_cols=18 Identities=33% Similarity=0.940 Sum_probs=15.0
Q ss_pred CCCCCccccCCCCCCCCe
Q 035653 20 MEKLDTQFQCPFCGHGTS 37 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~~~s 37 (87)
-..||.-|.||.|++.++
T Consensus 30 f~~lP~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 30 FEDLPDDWACPVCGASKD 47 (52)
T ss_dssp TTSSCTTCCCSSSCCCTT
T ss_pred hHHCCCCCcCCCCCCcHH
Confidence 456899999999999764
No 44
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=81.05 E-value=0.38 Score=33.74 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=25.2
Q ss_pred ccccCCCCCCCCeEEEEEecc----CcEEEEEcCcccceeE
Q 035653 25 TQFQCPFCGHGTSVECRIDKK----IQIGEAFCWNCLERFC 61 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~----~~~g~~~C~~C~~~~~ 61 (87)
..|.||.|||...+--.+... ...-...|..||-.+.
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 479999999988664433211 1344678999998764
No 45
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=80.98 E-value=0.9 Score=26.38 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=28.3
Q ss_pred CCCCccccCCCCCCCCeEEEEEeccCcEEEEEcC--cccceeEee--cCCC
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCW--NCLERFCTQ--IHAL 67 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~--~C~~~~~~~--i~~L 67 (87)
+.|-....||.|..+ ++ .+. +.+.|. .||..|-.. |+-|
T Consensus 5 ~~lL~iL~CP~c~~~--L~--~~~----~~L~C~~~~c~~~YPI~dGIPvl 47 (56)
T 2kpi_A 5 AGLLEILACPACHAP--LE--ERD----AELICTGQDCGLAYPVRDGIPVL 47 (56)
T ss_dssp CSCTTSCCCSSSCSC--EE--EET----TEEEECSSSCCCEEEEETTEECC
T ss_pred HHHHhheeCCCCCCc--ce--ecC----CEEEcCCcCCCcEEeeECCEeee
Confidence 356678899999984 33 222 889999 999999765 5443
No 46
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=80.66 E-value=0.78 Score=26.36 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=16.4
Q ss_pred CCCCCccccCCCCCCCCeEEE
Q 035653 20 MEKLDTQFQCPFCGHGTSVEC 40 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~~~sV~v 40 (87)
-..||.-|.||.|++.++--.
T Consensus 29 f~~lP~dw~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 29 FEDLPDDWVCPLCGAPKSEFE 49 (52)
T ss_dssp GGGSCTTCBCTTTCCBGGGEE
T ss_pred HhHCCCCCcCCCCCCCHHHcE
Confidence 347899999999999876433
No 47
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=80.64 E-value=0.62 Score=27.07 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=16.5
Q ss_pred CCCCccccCCCCCCCCeEEEE
Q 035653 21 EKLDTQFQCPFCGHGTSVECR 41 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~ 41 (87)
..||.-|.||.|++.++--..
T Consensus 31 ~~lP~dw~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 31 EDIPADWVCPDCGVGKIDFEM 51 (55)
T ss_dssp GGSCTTCCCTTTCCCGGGEEE
T ss_pred hHCCCCCcCCCCCCCHHHcee
Confidence 458999999999998764443
No 48
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=80.60 E-value=0.28 Score=36.95 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=30.8
Q ss_pred CCCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCCchhhhhhhh
Q 035653 20 MEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALTEPIDIYAEW 77 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~epiDVYs~w 77 (87)
.+-|...-.||.||...+ .+.. +...|.+.|..||.--+. ..||-=++|
T Consensus 15 ~~~~~~~~~Cp~Cg~~~~-~iv~--D~~~G~~vC~~CG~Vl~e------~~id~~~Ew 63 (345)
T 3k7a_M 15 GPNLNIVLTCPECKVYPP-KIVE--RFSEGDVVCALCGLVLSD------KLVDTRSEW 63 (345)
T ss_dssp --CCCCCCCCSTTCCSCC-CCCC--CSSSCSCCCSSSCCCCCC------CCCCTTCCC
T ss_pred CccccCCCcCcCCCCCCC-ceEE--ECCCCCEecCCCCeEccc------ccccCCccc
Confidence 346666778999998521 1222 345689999999986543 335555555
No 49
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=80.51 E-value=2.2 Score=30.09 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=26.3
Q ss_pred cccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeE
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFC 61 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~ 61 (87)
.=.||.|+.+.+.-+ ++.+..+-.+.|..||....
T Consensus 96 YVlC~~C~sPdT~L~-k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 96 FVLCPECENPETDLH-VNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HHSCTTTSSSCEEEE-EETTTTEEEEEETTTCCCCC
T ss_pred eEECCCCCCCccEEE-EecCCCEEEEEccccCCccc
Confidence 447999999875444 34367788899999998643
No 50
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=80.41 E-value=0.55 Score=20.93 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=6.2
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.||.
T Consensus 2 k~~~C~~C~k 11 (27)
T 2kvh_A 2 KPFSCSLCPQ 11 (27)
T ss_dssp CCEECSSSSC
T ss_pred cCccCCCcCh
Confidence 3566776664
No 51
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=79.46 E-value=0.52 Score=21.26 Aligned_cols=10 Identities=30% Similarity=1.258 Sum_probs=6.2
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.||.
T Consensus 2 k~~~C~~C~k 11 (27)
T 2kvg_A 2 APYRCPLCRA 11 (27)
T ss_dssp CTEEETTTTE
T ss_pred cCcCCCCCCc
Confidence 3567777764
No 52
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=78.27 E-value=0.83 Score=21.81 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (37)
T 1p7a_A 9 IKPFQCPDCDR 19 (37)
T ss_dssp SSSBCCTTTCC
T ss_pred CCCccCCCCCc
Confidence 46799999986
No 53
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=77.79 E-value=0.33 Score=30.68 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=34.7
Q ss_pred cccCCCCCCCCeEEEEEeccCcEEEEEcCccccee-EeecCCCCc-------------hhhhhhhhHHHHHHh
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF-CTQIHALTE-------------PIDIYAEWIDECERA 84 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~-~~~i~~L~e-------------piDVYs~wiD~~e~~ 84 (87)
.+.||.|+..+.+- .........|+.|+... ...+..|+. =|+.|+.|--.|.+.
T Consensus 5 ~~~c~~c~~~n~~p----~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~ 73 (148)
T 3p2a_A 5 NTVCTACMATNRLP----EERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSF 73 (148)
T ss_dssp EEECTTTCCEEEEE----SSCSCSCCBCTTTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHH
T ss_pred EEECcccccccCCC----CcccccCCcchhcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHH
Confidence 67899999965333 34444456799999863 333433332 167788887776653
No 54
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=77.77 E-value=0.81 Score=20.31 Aligned_cols=10 Identities=40% Similarity=1.408 Sum_probs=5.9
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.|+.
T Consensus 2 k~~~C~~C~~ 11 (30)
T 2m0d_A 2 KPYQCDYCGR 11 (30)
T ss_dssp CCEECTTTCC
T ss_pred cCccCCCCCc
Confidence 3566666664
No 55
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=77.04 E-value=0.9 Score=27.62 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=17.6
Q ss_pred CCCCccccCCCCCCCCeEEEEE
Q 035653 21 EKLDTQFQCPFCGHGTSVECRI 42 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~i 42 (87)
..||.-|.||.|++.++--..+
T Consensus 35 ~~lPddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 35 VDLSDSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp GGSCTTCBCTTTCCBGGGEEEC
T ss_pred hhCCCCCcCCCCCCCHHHceEc
Confidence 4588999999999987655554
No 56
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.09 E-value=0.26 Score=28.62 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=19.6
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
....||.||.. ..++...|+.||..
T Consensus 13 ~k~iCpkC~a~----------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT----------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE----------ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc----------CCCCceecCCCCCc
Confidence 34569999983 55778899999975
No 57
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=76.06 E-value=0.97 Score=20.00 Aligned_cols=9 Identities=33% Similarity=1.028 Sum_probs=6.0
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 1ard_A 2 SFVCEVCTR 10 (29)
T ss_dssp CCBCTTTCC
T ss_pred CeECCCCCc
Confidence 467777764
No 58
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=76.05 E-value=1 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.927 Sum_probs=15.6
Q ss_pred CCCCCCccccCCCCCCCCe
Q 035653 19 GMEKLDTQFQCPFCGHGTS 37 (87)
Q Consensus 19 ~~~kl~~~F~CPfC~~~~s 37 (87)
+-..||--|.||.||+.++
T Consensus 29 ~fe~lP~dw~CP~Cg~~K~ 47 (54)
T 4rxn_A 29 DFKDIPDDWVCPLCGVGKD 47 (54)
T ss_dssp CGGGSCTTCBCTTTCCBGG
T ss_pred ChhHCCCCCcCcCCCCcHH
Confidence 3457899999999999765
No 59
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=75.86 E-value=1 Score=19.98 Aligned_cols=10 Identities=30% Similarity=1.185 Sum_probs=5.7
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.|+.
T Consensus 2 k~~~C~~C~k 11 (28)
T 2kvf_A 2 RPYSCSVCGK 11 (28)
T ss_dssp CSEECSSSCC
T ss_pred cCccCCCCCc
Confidence 3466666654
No 60
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=75.52 E-value=0.97 Score=19.84 Aligned_cols=9 Identities=33% Similarity=1.268 Sum_probs=5.8
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 2m0e_A 2 EHKCPHCDK 10 (29)
T ss_dssp CCCCSSCCC
T ss_pred CCcCCCCCc
Confidence 466777764
No 61
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=75.47 E-value=0.78 Score=31.24 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=25.1
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
+.=.||.|+.+.+.-++ ++.+-.+.|..||..
T Consensus 101 ~yVlC~~C~sPdT~l~k---~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 101 KFVICHECNRPDTRIIR---EGRISLLKCEACGAK 132 (138)
T ss_dssp HHHHHTCCSSCSSCCEE---ETTTTEEECSTTSCC
T ss_pred hEEECCCCCCcCcEEEE---cCCeEEEEccCCCCC
Confidence 34569999999876664 456788999999985
No 62
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.99 E-value=1 Score=21.38 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2els_A 7 GKIFTCEYCNK 17 (36)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEECCCCCc
Confidence 45789999985
No 63
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.87 E-value=0.97 Score=21.34 Aligned_cols=11 Identities=27% Similarity=0.993 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elt_A 7 GKPYKCPQCSY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCCCCCCCCc
Confidence 45788998885
No 64
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=73.92 E-value=1.2 Score=19.94 Aligned_cols=9 Identities=22% Similarity=1.076 Sum_probs=6.1
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (30)
T 1paa_A 2 AYACGLCNR 10 (30)
T ss_dssp CSBCTTTCC
T ss_pred CcCCcccCc
Confidence 477777765
No 65
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=73.90 E-value=1 Score=20.02 Aligned_cols=9 Identities=44% Similarity=1.257 Sum_probs=4.8
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 1rik_A 2 KFACPECPK 10 (29)
T ss_dssp CEECSSSSC
T ss_pred CccCCCCCc
Confidence 355555553
No 66
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.81 E-value=1.2 Score=21.18 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elq_A 7 GKPFKCSLCEY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45788999885
No 67
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=73.72 E-value=1.7 Score=27.29 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=12.1
Q ss_pred CCCccccCCCCCCCCeEEEEE
Q 035653 22 KLDTQFQCPFCGHGTSVECRI 42 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~i 42 (87)
.||.-|.||.|++.++--..+
T Consensus 56 dlPddW~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 56 DIPDDWSCPDCGAAKSDFEMV 76 (81)
T ss_dssp TSCTTCCCTTTCCCGGGEEEE
T ss_pred HCCCCCcCCCCCCCHHHcEEc
Confidence 456666666666665444433
No 68
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=73.37 E-value=4.1 Score=24.75 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=33.4
Q ss_pred CccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCC----chh--hhhhhhHHH
Q 035653 24 DTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALT----EPI--DIYAEWIDE 80 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~----epi--DVYs~wiD~ 80 (87)
+...=||.|+.. |.. + .....+.|..||..|-..-...+ +|+ +.|.+|+..
T Consensus 23 ~~~~wCP~C~~~--~~~--~--~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 23 PKFLWCAQCSFG--FIY--E--REQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCEECCSSSCCC--EEC--C--CSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred CCEeECcCCCch--hee--c--CCCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 333349988873 322 1 12345899999999987644433 555 789999865
No 69
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=73.25 E-value=1.3 Score=22.27 Aligned_cols=10 Identities=20% Similarity=0.198 Sum_probs=7.0
Q ss_pred CccccCCCCC
Q 035653 24 DTQFQCPFCG 33 (87)
Q Consensus 24 ~~~F~CPfC~ 33 (87)
++.|.||.||
T Consensus 36 ~~~~~C~~cg 45 (45)
T 2epq_A 36 SVGKSGPSSG 45 (45)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCcCCC
Confidence 4567777776
No 70
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=73.19 E-value=1.2 Score=20.80 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=7.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 5 ~k~~~C~~C~k 15 (35)
T 2elx_A 5 SSGYVCALCLK 15 (35)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCcc
Confidence 34688888875
No 71
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.04 E-value=1.1 Score=21.35 Aligned_cols=11 Identities=27% Similarity=1.165 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elp_A 7 GRAMKCPYCDF 17 (37)
T ss_dssp CCCEECSSSSC
T ss_pred CCCeECCCCCh
Confidence 45688888875
No 72
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=75.37 E-value=0.72 Score=20.32 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=5.4
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.||.
T Consensus 2 p~~C~~C~k 10 (26)
T 2lvu_A 2 PYVCERCGK 10 (26)
Confidence 466666664
No 73
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=72.33 E-value=2 Score=27.01 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=20.8
Q ss_pred cccCCCCCCCC-eEEEEEeccCcEEEEEcCcccce
Q 035653 26 QFQCPFCGHGT-SVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 26 ~F~CPfC~~~~-sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
...||||+-.. |+.| .... +.-.|-.||..
T Consensus 37 ~~~CPfh~e~~pSf~V--~~~k--~~~~Cf~cg~g 67 (103)
T 1d0q_A 37 FGLCPFHGEKTPSFSV--SPEK--QIFHCFGCGAG 67 (103)
T ss_dssp EECCSSSCCSSCCEEE--ETTT--TEEEETTTCCE
T ss_pred EEECCCCCCCCCcEEE--EcCC--CEEEECCCCCC
Confidence 56899998533 5555 3333 56899999975
No 74
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=74.71 E-value=0.77 Score=20.55 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=6.6
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.|+.
T Consensus 2 k~~~C~~C~k 11 (30)
T 2lvr_A 2 KPYVCIHCQR 11 (30)
Confidence 4577777765
No 75
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=71.88 E-value=1.3 Score=19.50 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=4.1
Q ss_pred cccCCCCC
Q 035653 26 QFQCPFCG 33 (87)
Q Consensus 26 ~F~CPfC~ 33 (87)
.|.|+.|+
T Consensus 2 ~~~C~~C~ 9 (29)
T 2m0f_A 2 PLKCRECG 9 (29)
T ss_dssp CEECTTTS
T ss_pred CccCCCCC
Confidence 35555555
No 76
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=71.39 E-value=1.3 Score=19.54 Aligned_cols=9 Identities=33% Similarity=1.287 Sum_probs=5.6
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (30)
T 1klr_A 2 TYQCQYCEF 10 (30)
T ss_dssp CCCCSSSSC
T ss_pred CccCCCCCC
Confidence 466666664
No 77
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.78 E-value=1.6 Score=20.47 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~~~~~C~~C~k 17 (36)
T 2elr_A 7 GKTHLCDMCGK 17 (36)
T ss_dssp CSSCBCTTTCC
T ss_pred CCCeecCcCCC
Confidence 46799999985
No 78
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.57 E-value=1.6 Score=21.30 Aligned_cols=11 Identities=27% Similarity=1.093 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2ytb_A 9 EKPYRCDQCGK 19 (42)
T ss_dssp CCSBCCTTTTC
T ss_pred CCCeeCCCccc
Confidence 56799999986
No 79
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=70.52 E-value=0.66 Score=32.01 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=25.7
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
+.-.||-|+.+.+.-+ +++.+-.+.|..||...
T Consensus 103 ~yVlC~~C~sPdT~L~---k~~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 103 EYVICPVCGSPDTKII---KRDRFHFLKCEACGAET 135 (148)
T ss_dssp HHSSCSSSCCTTCCCC---BSSSSBCCCCSSSCCCC
T ss_pred HEEECCCCCCcCcEEE---EeCCEEEEEecCCCCCc
Confidence 3457999999987655 35677889999999853
No 80
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.37 E-value=6.8 Score=23.57 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=28.7
Q ss_pred ccCCCCCCccc---cCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 17 TKGMEKLDTQF---QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 17 kk~~~kl~~~F---~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
|+-.+...+.| .||-|++ +++.+.... -.+.|..||..-..+
T Consensus 3 krLv~~PnS~Fm~VkCp~C~~---~q~VFSha~--t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 3 KPIIPMPRSRFLRVKCIDCGN---EQIVFSHPA--TKVRCLICGATLVEP 47 (63)
T ss_dssp GGGCCCCSCCEEEEECSSSCC---EEEEESSCS--SCEECSSSCCEEEEC
T ss_pred cccccCCCCcEEEEECCCCCC---eeEEEecCC--eEEEccCcCCEEecC
Confidence 44455555666 6999999 445565443 568999999876543
No 81
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.27 E-value=1.4 Score=21.30 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=8.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elm_A 7 GHLYYCSQCHY 17 (37)
T ss_dssp SCEEECSSSSC
T ss_pred CcCeECCCCCc
Confidence 45688888875
No 82
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=70.08 E-value=1.5 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.641 Sum_probs=19.7
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
..++.+.|+.||+ |.. .. +--.|.+||..
T Consensus 134 ~~~~~~~C~~CG~---i~~----~~--~p~~CP~Cg~~ 162 (170)
T 3pwf_A 134 EIKKVYICPICGY---TAV----DE--APEYCPVCGAP 162 (170)
T ss_dssp CCSCEEECTTTCC---EEE----SC--CCSBCTTTCCB
T ss_pred CCCCeeEeCCCCC---eeC----CC--CCCCCCCCCCC
Confidence 3468999999999 322 11 22299999953
No 83
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.95 E-value=0.47 Score=27.80 Aligned_cols=32 Identities=31% Similarity=0.648 Sum_probs=24.4
Q ss_pred cccCCCCCCCCeEEEEEeccCcEEEEEcCc--ccceeEee
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQIGEAFCWN--CLERFCTQ 63 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~g~~~C~~--C~~~~~~~ 63 (87)
.=+||.|+.. |.+..|-.++.|+. |+..|-..
T Consensus 6 ~k~CP~C~~~------Iek~~GCnhmtC~~~~C~~~FCw~ 39 (60)
T 1wd2_A 6 TKECPKCHVT------IEKDGGCNHMVCRNQNCKAEFCWV 39 (60)
T ss_dssp CCCCTTTCCC------CSSCCSCCSSSCCSSGGGSCCSSS
T ss_pred ceECcCCCCe------eEeCCCCCcEEECCCCcCCEEeeC
Confidence 3479999973 46677888899998 98887544
No 84
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=69.86 E-value=3.9 Score=27.16 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=15.5
Q ss_pred cCCCCCCCCeEEEEEeccC
Q 035653 28 QCPFCGHGTSVECRIDKKI 46 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~ 46 (87)
.||.||++.||++.-.+..
T Consensus 54 kcprcgaegsvsivetkng 72 (131)
T 2x5c_A 54 KCPRCGAEGSVSIVETKNG 72 (131)
T ss_dssp ECTTTSCEEEEEEEECTTS
T ss_pred cCCCCCCccceEEEEecCC
Confidence 6999999999998765543
No 85
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.52 E-value=1.6 Score=20.67 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elv_A 7 GLLYDCHICER 17 (36)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45688888885
No 86
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=69.50 E-value=2.8 Score=27.74 Aligned_cols=34 Identities=29% Similarity=0.624 Sum_probs=23.3
Q ss_pred CCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
....|.|+.||+ -|++ + ..+-+.++| ||+..+--
T Consensus 4 ~~~fYkC~~CGn--ivev-~--~~g~~~l~C--CG~~m~~l 37 (126)
T 1vzi_A 4 RLQVYKCEVCGN--IVEV-L--NGGIGELVC--CNQDMKLM 37 (126)
T ss_dssp TTCEEECTTTCC--EEEE-E--ECCSSCEEE--TTEECEEC
T ss_pred cCcEEEcCCCCe--EEEE-E--cCCCcceec--CCcccccc
Confidence 357999999997 2433 2 355577888 88876553
No 87
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=69.19 E-value=1.8 Score=27.55 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=15.9
Q ss_pred CCCCccccCCCCCCCCeEEEE
Q 035653 21 EKLDTQFQCPFCGHGTSVECR 41 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~ 41 (87)
..||.-|.||.||+.++--..
T Consensus 63 edlPddW~CPvCga~K~~F~~ 83 (87)
T 1s24_A 63 EDIPDDWCCPDCGATKEDYVL 83 (87)
T ss_dssp GGCCTTCCCSSSCCCGGGEEE
T ss_pred hHCCCCCCCCCCCCCHHHhhh
Confidence 468888999999997764443
No 88
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.90 E-value=1.4 Score=20.95 Aligned_cols=11 Identities=27% Similarity=1.087 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elo_A 7 GRSYSCPVCEK 17 (37)
T ss_dssp CCCCEETTTTE
T ss_pred CCCcCCCCCCC
Confidence 45688888874
No 89
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=68.71 E-value=1.7 Score=20.34 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=7.1
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.|+.
T Consensus 6 k~~~C~~C~k 15 (35)
T 1srk_A 6 RPFVCRICLS 15 (35)
T ss_dssp SCEECSSSCC
T ss_pred cCeeCCCCCc
Confidence 4678888775
No 90
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=68.19 E-value=1.7 Score=20.32 Aligned_cols=9 Identities=44% Similarity=1.254 Sum_probs=6.1
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 2 p~~C~~C~k 10 (32)
T 2kfq_A 2 AFACPACPK 10 (32)
T ss_dssp CSSSSSSCT
T ss_pred CCCCCCCCc
Confidence 467777764
No 91
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=67.97 E-value=0.42 Score=29.18 Aligned_cols=30 Identities=17% Similarity=0.454 Sum_probs=20.8
Q ss_pred CCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
.+-.|.|+.||++. ++ +.. ..+.|..||.+
T Consensus 25 ~~v~Y~C~~CG~~~--e~--~~~---d~irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKL--SL--SRT---DAVRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEE--CC--CTT---STTCCSSSCCC
T ss_pred ceEEEECCCCCCcc--ee--CCC---CCccCCCCCce
Confidence 46789999999853 22 222 23589999974
No 92
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=71.13 E-value=1.1 Score=20.07 Aligned_cols=9 Identities=44% Similarity=1.173 Sum_probs=5.5
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 2lvt_A 2 PCQCVMCGK 10 (29)
Confidence 466666664
No 93
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=67.37 E-value=2 Score=20.84 Aligned_cols=11 Identities=27% Similarity=1.038 Sum_probs=7.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 4 ~k~~~C~~C~k 14 (39)
T 1njq_A 4 PRSYTCSFCKR 14 (39)
T ss_dssp SSSEECTTTCC
T ss_pred CCceECCCCCc
Confidence 35688888875
No 94
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=67.16 E-value=4.6 Score=25.34 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=27.6
Q ss_pred CccccC-----CCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 24 DTQFQC-----PFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~C-----PfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
+..+.| |+ ||+. |-+.||.+ .+.+.|.-||..|...
T Consensus 26 ~~~V~CdGg~g~L-GHPr-VyL~ld~~--~g~~~CpYCg~~f~l~ 66 (80)
T 2jvm_A 26 TWKVACDGGEGAL-GHPR-VWLSIPHE--TGFVECGYCDRRYIHE 66 (80)
T ss_dssp CSEEEECCCSTTC-CCCC-EEEECCTT--TCEEECSSSSCEEEEH
T ss_pred CcEEEcCCCCCCC-CCCE-EEEEccCC--CCeEECCCCCCEEEec
Confidence 567888 44 8876 88888543 3778999999999765
No 95
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=66.95 E-value=2 Score=28.73 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.6
Q ss_pred CccccCCCCCCCC
Q 035653 24 DTQFQCPFCGHGT 36 (87)
Q Consensus 24 ~~~F~CPfC~~~~ 36 (87)
+..+.||.||+.+
T Consensus 105 ~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 105 HAFLACPKCGSHD 117 (139)
T ss_dssp GGGCSCSSSSCCC
T ss_pred ccCCcCccccCCc
Confidence 4478999999965
No 96
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=66.86 E-value=0.91 Score=29.17 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=22.7
Q ss_pred CCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
..+-..|.|+ ||+ .++++ + .+-...|..||..
T Consensus 43 ~a~KRFFkC~-C~~-Rt~sl--~---r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 43 NGVKRFFKCP-CGN-RTISL--D---RLPKKHCSTCGLF 74 (92)
T ss_dssp EEECEEEECT-TSC-EEEES--S---SSCCSCCTTTCSC
T ss_pred eeeEEEEECC-CCC-ceeEe--e---eCCCCCCCCCCCC
Confidence 3455699999 998 45555 3 3455589999975
No 97
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.77 E-value=2.2 Score=20.81 Aligned_cols=11 Identities=18% Similarity=0.806 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (42)
T 2yte_A 8 EKPYSCAECKE 18 (42)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCeECCCCCC
Confidence 46799999986
No 98
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.53 E-value=2.1 Score=21.05 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2en7_A 10 MKPYVCNECGK 20 (44)
T ss_dssp SSSSCCTTTCC
T ss_pred CcCeECCCCCC
Confidence 56799999986
No 99
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=66.33 E-value=1 Score=27.12 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=22.7
Q ss_pred CccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeE
Q 035653 24 DTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFC 61 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~ 61 (87)
+-.|.|..||++..+ +. ...|.|..||-+--
T Consensus 19 ~v~Y~C~~Cg~~~~l----~~---~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 19 TMIYLCADCGARNTI----QA---KEVIRCRECGHRVM 49 (63)
T ss_dssp CCCCBCSSSCCBCCC----CS---SSCCCCSSSCCCCC
T ss_pred CeEEECCCCCCeeec----CC---CCceECCCCCcEEE
Confidence 678999999997542 22 24589999997643
No 100
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=66.29 E-value=0.83 Score=30.76 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=23.8
Q ss_pred CCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
....=.| ||.||+ -+-.+-++..+.....|+.|+-.+
T Consensus 20 ~~~~~~F-CPeCgN--mL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRF-CRDCNN--MLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCB-CTTTCC--BCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCee-CCCCCC--EeeECccCCCceeEEECCCCCCcE
Confidence 3334455 999997 244444454566788999999654
No 101
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=66.03 E-value=2 Score=20.29 Aligned_cols=9 Identities=44% Similarity=1.257 Sum_probs=6.0
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.||.
T Consensus 2 p~~C~~C~k 10 (33)
T 1rim_A 2 KFACPECPK 10 (33)
T ss_dssp CCCCSSSCC
T ss_pred cccCCCCCc
Confidence 467777765
No 102
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.76 E-value=2.1 Score=21.04 Aligned_cols=11 Identities=18% Similarity=0.824 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2eof_A 10 EKPYECNECQK 20 (44)
T ss_dssp CCSEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 56799999985
No 103
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=65.73 E-value=2.1 Score=20.97 Aligned_cols=11 Identities=27% Similarity=1.105 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (42)
T 2el5_A 8 ENPYECSECGK 18 (42)
T ss_dssp CCSEECSSSCC
T ss_pred CCCccCCCcCh
Confidence 45789999885
No 104
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=65.70 E-value=1.7 Score=22.48 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.||.
T Consensus 6 ekp~~C~~CgK 16 (36)
T 1fv5_A 6 PARFMCLPCGI 16 (36)
T ss_dssp CCCCEETTTTE
T ss_pred ccCeECCCCCC
Confidence 56899999985
No 105
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.56 E-value=2.1 Score=20.90 Aligned_cols=11 Identities=27% Similarity=0.972 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (41)
T 2ept_A 8 QRVYECQECGK 18 (41)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45799999985
No 106
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.25 E-value=2.2 Score=21.30 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eow_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCCEECTTSCC
T ss_pred CCCeeccccCC
Confidence 56799999986
No 107
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.19 E-value=2.3 Score=20.80 Aligned_cols=11 Identities=27% Similarity=1.068 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2en2_A 9 EKPYKCETCGA 19 (42)
T ss_dssp SCSEECTTTCC
T ss_pred CCCEeCCCcCh
Confidence 45799999985
No 108
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.91 E-value=2.4 Score=21.24 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=9.3
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq1_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SCCCCCTTTTC
T ss_pred CCCeECCcCCh
Confidence 56799999986
No 109
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.89 E-value=2.1 Score=21.22 Aligned_cols=11 Identities=27% Similarity=0.978 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2yu5_A 10 ENPFKCSKCDR 20 (44)
T ss_dssp CCSEECSSSSC
T ss_pred CCCeECCCCCc
Confidence 46799999985
No 110
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.84 E-value=2.4 Score=20.75 Aligned_cols=11 Identities=27% Similarity=1.129 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2eos_A 9 EKPYPCEICGT 19 (42)
T ss_dssp SCCBCCSSSCC
T ss_pred CCCEECCCCCC
Confidence 56799999986
No 111
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.66 E-value=2.2 Score=21.36 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2en3_A 10 EKPFQCKECGM 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCcccCh
Confidence 56799999985
No 112
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.58 E-value=2.2 Score=21.28 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytf_A 10 EKPFECSECQK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCcCCCCCCc
Confidence 56799999985
No 113
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.87 E-value=2.5 Score=21.14 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enf_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CcCeECCCCCc
Confidence 56799999986
No 114
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=63.83 E-value=6.8 Score=25.64 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=20.8
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 27 FQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 27 F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
-.||.|+++- +...+ ...|..|+..|...
T Consensus 33 ~~CP~Cq~eL------~~~g~--~~hC~~C~~~f~~~ 61 (101)
T 2jne_A 33 LHCPQCQHVL------DQDNG--HARCRSCGEFIEMK 61 (101)
T ss_dssp CBCSSSCSBE------EEETT--EEEETTTCCEEEEE
T ss_pred ccCccCCCcc------eecCC--EEECccccchhhcc
Confidence 6899999862 22333 55799999988765
No 115
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.64 E-value=2.5 Score=20.93 Aligned_cols=11 Identities=18% Similarity=0.800 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2emb_A 10 RKRYECSKCQA 20 (44)
T ss_dssp CSSEECTTTCC
T ss_pred CCCeECCCCCC
Confidence 45799999986
No 116
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.63 E-value=2.4 Score=21.17 Aligned_cols=11 Identities=27% Similarity=1.053 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2epv_A 10 EKPYECNECGK 20 (44)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 46799999985
No 117
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.56 E-value=2.4 Score=21.28 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoy_A 10 EKCFKCNKCEK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CCCEECcCCCC
Confidence 46799999985
No 118
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=63.36 E-value=2.3 Score=21.33 Aligned_cols=11 Identities=36% Similarity=1.147 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emj_A 10 EKPFECAECGK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCCEECCCCCc
Confidence 56799999985
No 119
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=63.18 E-value=2.5 Score=20.56 Aligned_cols=11 Identities=36% Similarity=1.045 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 9 ~~~~~C~~C~k 19 (42)
T 2epc_A 9 ETPYLCGQCGK 19 (42)
T ss_dssp SCCEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 45688998885
No 120
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.09 E-value=2.4 Score=21.17 Aligned_cols=11 Identities=27% Similarity=1.084 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep3_A 10 EKPYRCAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 56799999986
No 121
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.01 E-value=2.5 Score=21.09 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yts_A 10 EKPYICNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCEECCCCCh
Confidence 56799999985
No 122
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.00 E-value=2.5 Score=21.16 Aligned_cols=11 Identities=27% Similarity=1.126 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2emi_A 10 ERHYECSECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCCCCCCCCc
Confidence 46799999985
No 123
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.97 E-value=2.1 Score=21.17 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2eoj_A 10 ENPYECCECGK 20 (44)
T ss_dssp CCSCEETTTTE
T ss_pred CcCeeCCCCCC
Confidence 56799999985
No 124
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.87 E-value=2.8 Score=21.03 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yth_A 10 EKPFQCEECGK 20 (46)
T ss_dssp SSSBCCSSSCC
T ss_pred CcCCCCCCCCc
Confidence 56799999986
No 125
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.76 E-value=2.7 Score=20.93 Aligned_cols=11 Identities=27% Similarity=1.069 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eov_A 10 EKPYKCSDCGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CCCccCCccCh
Confidence 46799999986
No 126
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.66 E-value=2.8 Score=20.91 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emg_A 10 ENPFICSECGK 20 (46)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCEECCccCc
Confidence 46799999986
No 127
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.54 E-value=2.7 Score=21.03 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yti_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCTTCCSSSCC
T ss_pred CcCeECCCCCc
Confidence 56799999986
No 128
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=62.34 E-value=2.9 Score=21.26 Aligned_cols=10 Identities=0% Similarity=0.105 Sum_probs=7.1
Q ss_pred CccccCCCCC
Q 035653 24 DTQFQCPFCG 33 (87)
Q Consensus 24 ~~~F~CPfC~ 33 (87)
++.|.|+.|+
T Consensus 38 ~k~~~C~~C~ 47 (48)
T 2epr_A 38 EKPYSSGPSS 47 (48)
T ss_dssp CCCCCSCCCC
T ss_pred CCCccCCCCC
Confidence 4567888876
No 129
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.31 E-value=2.7 Score=20.99 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eoq_A 10 EKPFKCDICGK 20 (46)
T ss_dssp SCSCCCSSSCC
T ss_pred CCCcCCCcCCc
Confidence 56799999986
No 130
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.21 E-value=2.2 Score=21.46 Aligned_cols=11 Identities=27% Similarity=1.129 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoz_A 10 EKPYSCNVCGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeECcccCh
Confidence 45799999985
No 131
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.11 E-value=3 Score=20.77 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eop_A 10 EKPHECRECGK 20 (46)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCeeCCCCCc
Confidence 56799999986
No 132
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.10 E-value=2.6 Score=21.06 Aligned_cols=11 Identities=18% Similarity=0.996 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2em3_A 10 EKPYECKVCSK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 56799999985
No 133
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.91 E-value=2.9 Score=20.90 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=9.6
Q ss_pred CccccCCCCCCC
Q 035653 24 DTQFQCPFCGHG 35 (87)
Q Consensus 24 ~~~F~CPfC~~~ 35 (87)
++.|.|+.|+..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq2_A 10 GKPYQCNECGKA 21 (46)
T ss_dssp SCSSSCCSSCCC
T ss_pred CCCeECCCCCcc
Confidence 567999999863
No 134
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.87 E-value=2.8 Score=20.95 Aligned_cols=11 Identities=27% Similarity=1.087 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emh_A 10 ERPYICTVCGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CCCcCCCCCCc
Confidence 56799999985
No 135
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.87 E-value=3.3 Score=20.71 Aligned_cols=11 Identities=18% Similarity=0.951 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enh_A 10 EKPYECDVCRK 20 (46)
T ss_dssp SSSCBCTTTCC
T ss_pred CCCcCCCCcCc
Confidence 56799999986
No 136
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.82 E-value=2.7 Score=21.03 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytj_A 10 EKPYICAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCh
Confidence 56799999985
No 137
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.72 E-value=3 Score=20.80 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=9.3
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytn_A 10 KKPYKCNECGK 20 (46)
T ss_dssp CSSCBCTTTCC
T ss_pred CcCeECCCCCC
Confidence 56799999986
No 138
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.71 E-value=3.1 Score=20.88 Aligned_cols=11 Identities=27% Similarity=1.189 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eon_A 10 EKPYKCQVCGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CcccCCCCCCc
Confidence 56799999986
No 139
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.69 E-value=2.7 Score=21.08 Aligned_cols=11 Identities=27% Similarity=1.069 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yto_A 10 EKPYKCSDCGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCEECcccCC
Confidence 46799999985
No 140
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.52 E-value=2.8 Score=20.86 Aligned_cols=11 Identities=27% Similarity=1.075 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep1_A 10 EKPYECSDCGK 20 (46)
T ss_dssp CCSSCCSSSCC
T ss_pred CCCcCCCCCCc
Confidence 56799999986
No 141
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=61.24 E-value=5.2 Score=30.49 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=20.3
Q ss_pred cccCCCCCCC-CeEEEEEeccCcEEEEEcCcccce
Q 035653 26 QFQCPFCGHG-TSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 26 ~F~CPfC~~~-~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
..-||||+-. .|+.|. ... +.-+|-.||..
T Consensus 34 ~~~CPfh~ektpSf~V~--~~k--~~~~CFgCg~g 64 (407)
T 2au3_A 34 RTNCPFHPDDTPSFYVS--PSK--QIFKCFGCGVG 64 (407)
T ss_dssp EECCSSSCCSSCCEEEE--TTT--TEEEETTTCCE
T ss_pred EeeCcCCCCCCCeEEEE--CCC--CEEEECCCCCC
Confidence 4579999843 255554 333 46799999975
No 142
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.23 E-value=2.9 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq4_A 10 EKLYNCKECGK 20 (46)
T ss_dssp CCCCCBTTTTB
T ss_pred CCCeECCCCCC
Confidence 56799999986
No 143
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.21 E-value=2.8 Score=21.00 Aligned_cols=11 Identities=27% Similarity=0.939 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em4_A 10 QRPYECIECGK 20 (46)
T ss_dssp SSSEECSSSCC
T ss_pred CcCcCCCCCCC
Confidence 46799999985
No 144
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.08 E-value=2.8 Score=20.87 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.||.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2epw_A 10 EKPCKCTECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCCCC
Confidence 46799999985
No 145
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.07 E-value=2.8 Score=20.86 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2yrj_A 10 EKPYRCGECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 46799999985
No 146
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=60.94 E-value=2.9 Score=20.85 Aligned_cols=11 Identities=18% Similarity=0.754 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em0_A 10 EKTWKCRECDM 20 (46)
T ss_dssp CCCCCCSSSCC
T ss_pred CcCeECCCCCc
Confidence 56799999986
No 147
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.93 E-value=2.8 Score=20.85 Aligned_cols=11 Identities=27% Similarity=1.235 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eme_A 10 EKPYVCDYCGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCh
Confidence 46799999986
No 148
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.89 E-value=3.2 Score=20.75 Aligned_cols=11 Identities=18% Similarity=0.767 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoh_A 10 KKPYECKECRK 20 (46)
T ss_dssp SCSCCCSSSCC
T ss_pred CCCcCCCCcCc
Confidence 56799999986
No 149
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.88 E-value=2.8 Score=20.99 Aligned_cols=11 Identities=27% Similarity=1.126 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytp_A 10 ERHYECSECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCcCCc
Confidence 46799999985
No 150
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.84 E-value=2.4 Score=21.20 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (45)
T 2epu_A 10 QKPFECTHCGK 20 (45)
T ss_dssp CCSEEETTTTE
T ss_pred CcCccCCCCCC
Confidence 46799999985
No 151
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.81 E-value=2.4 Score=21.14 Aligned_cols=11 Identities=27% Similarity=1.093 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq3_A 10 EKPYECNQCGK 20 (46)
T ss_dssp CCSSEETTTTE
T ss_pred CCCeECCCCCh
Confidence 56799999985
No 152
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=60.80 E-value=9.5 Score=23.46 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=11.4
Q ss_pred CCCCccccCCC--CCCC
Q 035653 21 EKLDTQFQCPF--CGHG 35 (87)
Q Consensus 21 ~kl~~~F~CPf--C~~~ 35 (87)
..=+++|.|++ |+..
T Consensus 22 ~sGEKPYkC~~~~CgKa 38 (73)
T 1x3c_A 22 YSPYRPYRCVHQGCFAA 38 (73)
T ss_dssp SCSSCSCBCCSTTCCCB
T ss_pred ccCCCCeECCCCCcChh
Confidence 44578999976 9973
No 153
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.70 E-value=3 Score=20.90 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=9.5
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2emz_A 9 GERPFKCNECGK 20 (46)
T ss_dssp CCCSCCCSSSCC
T ss_pred CCCCeECCCCCc
Confidence 356799999986
No 154
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=60.67 E-value=3.1 Score=20.81 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ely_A 10 EKPFKCVECGK 20 (46)
T ss_dssp CCSBCCSSSCC
T ss_pred CCCcccCccCc
Confidence 46799999986
No 155
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=60.66 E-value=2.9 Score=20.82 Aligned_cols=11 Identities=27% Similarity=1.032 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em9_A 10 EKPYNCKECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCcccc
Confidence 56799999986
No 156
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.64 E-value=2.9 Score=20.86 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ene_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SSSEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 56799999986
No 157
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=60.47 E-value=3.2 Score=20.79 Aligned_cols=11 Identities=27% Similarity=1.062 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emk_A 10 EKPYECKECGK 20 (46)
T ss_dssp SCSCBCSSSCC
T ss_pred CCceECCCCCc
Confidence 56799999986
No 158
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.32 E-value=2.9 Score=20.85 Aligned_cols=11 Identities=27% Similarity=1.214 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eml_A 10 EKPYECSVCGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCcCC
Confidence 46799999985
No 159
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.15 E-value=3.4 Score=20.59 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=9.5
Q ss_pred CccccCCCCCCC
Q 035653 24 DTQFQCPFCGHG 35 (87)
Q Consensus 24 ~~~F~CPfC~~~ 35 (87)
++.|.|+.|+..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2epz_A 10 EKPFDCIDCGKA 21 (46)
T ss_dssp CCSBCCTTTCCC
T ss_pred CCCeECCCCCce
Confidence 467999999863
No 160
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.10 E-value=3.4 Score=20.67 Aligned_cols=11 Identities=27% Similarity=0.763 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2en9_A 10 KKLFKCNECKK 20 (46)
T ss_dssp SCCCBCTTTCC
T ss_pred CCCEECCccCc
Confidence 56799999986
No 161
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.00 E-value=3 Score=20.89 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em2_A 10 EKPFKCKECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCEECCcCCc
Confidence 56799999986
No 162
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.88 E-value=3 Score=20.81 Aligned_cols=11 Identities=27% Similarity=1.241 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep2_A 10 EKPYECSICGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCcCCCCCCc
Confidence 56799999986
No 163
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=59.68 E-value=14 Score=27.05 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=24.3
Q ss_pred cccCCCCCCCCeEEEEEecc----------------C---cEEEEEcCcccceeEeecC
Q 035653 26 QFQCPFCGHGTSVECRIDKK----------------I---QIGEAFCWNCLERFCTQIH 65 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~----------------~---~~g~~~C~~C~~~~~~~i~ 65 (87)
...||.||+. +..-++.. . ......|..||..+.....
T Consensus 12 ~~~C~~Cg~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 12 PTACRVCGGG--VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV 68 (416)
T ss_dssp CEECTTTSCE--EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC
T ss_pred CCcCCCCCCe--eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC
Confidence 4689999986 43333321 1 1345789999998875544
No 164
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.67 E-value=3.2 Score=20.70 Aligned_cols=11 Identities=36% Similarity=1.084 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ytg_A 10 EKPFKCGECGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 46799999985
No 165
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.60 E-value=3.2 Score=20.69 Aligned_cols=11 Identities=27% Similarity=1.041 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq0_A 10 EKPYKCHECGK 20 (46)
T ss_dssp CCCEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 56799999986
No 166
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.19 E-value=3.3 Score=20.56 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en8_A 10 EKSHTCDECGK 20 (46)
T ss_dssp CSSEECTTTCC
T ss_pred CCCeECCCcCc
Confidence 56799999985
No 167
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=59.19 E-value=2.3 Score=24.89 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=10.2
Q ss_pred ccccCCCCCCCCe
Q 035653 25 TQFQCPFCGHGTS 37 (87)
Q Consensus 25 ~~F~CPfC~~~~s 37 (87)
+.|.||||++.+.
T Consensus 32 ~~W~C~~C~~~N~ 44 (59)
T 2yrc_A 32 KLWACNFCYQRNQ 44 (59)
T ss_dssp TEEECSSSCCEEE
T ss_pred CEEEcccCCCcCC
Confidence 4799999998653
No 168
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.01 E-value=3.5 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (47)
T 2epx_A 10 KKPYECIECGK 20 (47)
T ss_dssp CCSBCCSSSCC
T ss_pred CCCEECCccCc
Confidence 56799999986
No 169
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.01 E-value=3.2 Score=20.68 Aligned_cols=11 Identities=27% Similarity=1.060 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emy_A 10 ENPYECHECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CcCcCCCCCCc
Confidence 56799999985
No 170
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.97 E-value=3.5 Score=20.47 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytr_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCTTCCTTTCC
T ss_pred CcCcCCCCCCC
Confidence 56799999986
No 171
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.92 E-value=5.6 Score=22.59 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=28.6
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCCCC-chhhhhhhhH
Q 035653 27 FQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHALT-EPIDIYAEWI 78 (87)
Q Consensus 27 F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~L~-epiDVYs~wi 78 (87)
-.||+|+... ..+..-|.|-.|..-|...--.|+ ++++...+|+
T Consensus 7 ~~C~~C~~~~--------~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~ 51 (64)
T 1we9_A 7 GQCGACGESY--------AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYK 51 (64)
T ss_dssp CCCSSSCCCC--------CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCC
T ss_pred CCCCCCCCcc--------CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEE
Confidence 4599998742 123356889999999999844444 3444445554
No 172
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.87 E-value=3.5 Score=20.64 Aligned_cols=11 Identities=27% Similarity=1.108 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em6_A 10 EKCYKCDVCGK 20 (46)
T ss_dssp CCCCBCSSSCC
T ss_pred CCCeECCCCCc
Confidence 56799999986
No 173
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.85 E-value=3.2 Score=20.69 Aligned_cols=11 Identities=27% Similarity=1.059 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em7_A 10 EKPYKCEECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCccCCCccc
Confidence 46799999985
No 174
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=58.66 E-value=3.2 Score=20.65 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2el4_A 10 VKPYGCSQCAK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCceECCCCCc
Confidence 46799999985
No 175
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.63 E-value=3.3 Score=20.74 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoo_A 10 ERPYGCNECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCEEccccCc
Confidence 56799999985
No 176
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.27 E-value=3.4 Score=20.67 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emf_A 10 GKHFECTECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 46799999985
No 177
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=58.23 E-value=3.2 Score=17.89 Aligned_cols=7 Identities=29% Similarity=1.388 Sum_probs=3.6
Q ss_pred ccCCCCC
Q 035653 27 FQCPFCG 33 (87)
Q Consensus 27 F~CPfC~ 33 (87)
|.|+.|+
T Consensus 2 ~~C~~C~ 8 (27)
T 1znf_A 2 YKCGLCE 8 (27)
T ss_dssp CBCSSSC
T ss_pred ccCCCCC
Confidence 4555554
No 178
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.20 E-value=3.7 Score=20.30 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (44)
T 2eou_A 10 KTTSECQECGK 20 (44)
T ss_dssp SCCCCCTTTCC
T ss_pred CcCeECCCCCc
Confidence 56799999986
No 179
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.01 E-value=3.9 Score=20.52 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eom_A 10 ERGHRCSDCGK 20 (46)
T ss_dssp CSSCCCSSSCC
T ss_pred CCCcCCCCCCC
Confidence 56799999986
No 180
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.01 E-value=3.6 Score=20.44 Aligned_cols=11 Identities=27% Similarity=1.035 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eor_A 10 EKPYNCEECGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CcCccCCCCCC
Confidence 56799999985
No 181
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=57.97 E-value=3.5 Score=20.57 Aligned_cols=11 Identities=27% Similarity=1.099 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ema_A 10 EKRYKCNECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CcCcCCCCCcc
Confidence 56799999986
No 182
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=57.95 E-value=3.3 Score=21.45 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=21.0
Q ss_pred CccccCCCCCCCCeEEEEEec----cCcEEEEEcCcccceeEee
Q 035653 24 DTQFQCPFCGHGTSVECRIDK----KIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk----~~~~g~~~C~~C~~~~~~~ 63 (87)
++.|.|+.|+..-+-.-.+.. -.+.-...|..|+..|...
T Consensus 2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSH
T ss_pred CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCH
Confidence 357999999973211111100 1122347899999988653
No 183
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=57.93 E-value=9.9 Score=23.05 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=22.7
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
.||-|++ +++.++... -.+.|.+||.....+
T Consensus 9 KCp~C~n---iq~VFShA~--tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 9 KCPDCEH---EQVIFDHPS--TIVKCIICGRTVAEP 39 (66)
T ss_dssp ECTTTCC---EEEEESSCS--SCEECSSSCCEEEEC
T ss_pred ECCCCCC---ceEEEecCc--eEEEcccCCCEEeec
Confidence 6999998 556665543 568999999876543
No 184
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=57.90 E-value=3.4 Score=23.29 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=23.5
Q ss_pred CccccCCCCCCCCeEEEEEecc------CcEEEEEcCcccceeEee
Q 035653 24 DTQFQCPFCGHGTSVECRIDKK------IQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~------~~~g~~~C~~C~~~~~~~ 63 (87)
+++|.|+.||.. ..-.-... .+.-.-.|..||..|...
T Consensus 2 EKpy~C~~C~k~--F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 2 ERPFFCNFCGKT--YRDASGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCCEECTTTCCE--ESSHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CCCccCCCCCCE--eCCHHHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 578999999962 22111100 123346899999998653
No 185
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.87 E-value=3.4 Score=20.58 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yu8_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CSSEECSSSCC
T ss_pred CCCeECCcCCc
Confidence 56799999986
No 186
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=57.72 E-value=3.6 Score=21.52 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=9.2
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.||.
T Consensus 22 ~k~~~C~~C~k 32 (54)
T 1yui_A 22 EQPATCPICYA 32 (54)
T ss_dssp SCCEECTTTCC
T ss_pred CCCccCCCCCc
Confidence 56799999986
No 187
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.68 E-value=3.7 Score=20.51 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=9.5
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ytq_A 9 GEKPYGCSECGK 20 (46)
T ss_dssp CCCSCBCSSSCC
T ss_pred CCCCcCCCccCh
Confidence 356799999986
No 188
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=57.64 E-value=4.3 Score=27.73 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=16.8
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEcCcccc
Q 035653 27 FQCPFCGHGTSVECRIDKKIQIGEAFCWNCLE 58 (87)
Q Consensus 27 F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~ 58 (87)
|.||.|+..... .. ..+.|..|+.
T Consensus 3 ~~Cp~C~~~~~~------~~--~~~~C~~~~~ 26 (269)
T 1p91_A 3 FSCPLCHQPLSR------EK--NSYICPQRHQ 26 (269)
T ss_dssp BBCTTTCCBCEE------ET--TEEECTTCCE
T ss_pred ccCCCCCcccee------CC--CEEECCCCCc
Confidence 899999885432 11 3678999874
No 189
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.53 E-value=3.5 Score=20.60 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2em5_A 10 TKSHQCHECGR 20 (46)
T ss_dssp SCSEECSSSCC
T ss_pred CCCeECCcCCC
Confidence 46799999986
No 190
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.51 E-value=2.9 Score=20.64 Aligned_cols=11 Identities=27% Similarity=0.969 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (44)
T 2eox_A 10 SKSYNCNECGK 20 (44)
T ss_dssp CCCEEETTTTE
T ss_pred CCCeECcccCc
Confidence 56788998874
No 191
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.38 E-value=3.5 Score=20.53 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.3
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2enc_A 9 GEKPFKCEECGK 20 (46)
T ss_dssp CCCSEECSSSCC
T ss_pred CCCCcCCCCCCC
Confidence 356799999985
No 192
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.37 E-value=3.8 Score=20.47 Aligned_cols=12 Identities=25% Similarity=1.005 Sum_probs=9.6
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2elz_A 9 VEKPYKCEDCGK 20 (46)
T ss_dssp CCSSCBCSSSCC
T ss_pred CCCCeeCcccCc
Confidence 356799999986
No 193
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=57.20 E-value=3.6 Score=21.99 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 38 ~~~~~C~~C~k 48 (66)
T 2drp_A 38 VKVYPCPFCFK 48 (66)
T ss_dssp CCCEECTTTCC
T ss_pred CcCeECCCCCC
Confidence 46799999985
No 194
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.08 E-value=3.6 Score=20.57 Aligned_cols=11 Identities=27% Similarity=1.020 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em8_A 10 EKPYKCVECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECcccCc
Confidence 56799999986
No 195
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.97 E-value=3.6 Score=20.49 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emp_A 10 VKPYMCNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 56799999986
No 196
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.66 E-value=4.2 Score=20.30 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=9.6
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2ytt_A 9 GEKPYQCSECGK 20 (46)
T ss_dssp CCCTTCCSSSCC
T ss_pred CCCCeeCCCCCc
Confidence 356799999986
No 197
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.43 E-value=3.7 Score=20.27 Aligned_cols=11 Identities=27% Similarity=0.939 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (44)
T 2emx_A 8 EKPFGCSCCEK 18 (44)
T ss_dssp CCCEECSSSSC
T ss_pred CcCccCCCCCc
Confidence 45688998885
No 198
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.39 E-value=3.8 Score=20.40 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ytk_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SCSEECSSSCC
T ss_pred CCCEeCCcCCC
Confidence 56799999986
No 199
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.38 E-value=3.8 Score=20.53 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytm_A 10 EKPYKCMECGK 20 (46)
T ss_dssp CCSSSBTTTTB
T ss_pred CCCcCCCCCCc
Confidence 46799999986
No 200
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=56.22 E-value=3.7 Score=20.53 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=9.4
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2el6_A 9 GVNPYKCSQCEK 20 (46)
T ss_dssp CCCSEECSSSSC
T ss_pred CCCCeECCCCCc
Confidence 356799999986
No 201
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.17 E-value=3.8 Score=20.33 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emm_A 10 ERPHKCNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCCCh
Confidence 46799999985
No 202
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=55.86 E-value=6.1 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.543 Sum_probs=19.9
Q ss_pred ccCCC--CCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 27 FQCPF--CGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 27 F~CPf--C~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
=.||. ||..--..--. -...|+.||.+|.+.
T Consensus 119 ~~c~~~~cg~g~fma~h~------~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHK------DRLYCGKCHSVYKVN 151 (152)
T ss_dssp CBCCSTTSCSSSBEEECS------SCEEESSSSSCCEEC
T ss_pred CcCCCccCCCceEecccC------CCcccCCCceEEEec
Confidence 46999 99742111111 256999999988764
No 203
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.79 E-value=4.4 Score=20.07 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (43)
T 2yrm_A 8 NGAFFCNECDC 18 (43)
T ss_dssp SCCBCCSSSCC
T ss_pred CCCEECCCCCC
Confidence 45799999986
No 204
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=55.72 E-value=4.1 Score=21.03 Aligned_cols=11 Identities=36% Similarity=1.211 Sum_probs=7.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 5 ~kp~~C~~C~k 15 (48)
T 3iuf_A 5 DKPYACDICGK 15 (48)
T ss_dssp TSCEECTTTCC
T ss_pred CcCEECCCcCc
Confidence 45688888875
No 205
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.52 E-value=4 Score=20.33 Aligned_cols=11 Identities=27% Similarity=1.087 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytd_A 10 EKPYKCSECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCC
Confidence 46799999986
No 206
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.30 E-value=3.4 Score=20.62 Aligned_cols=11 Identities=27% Similarity=1.078 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ysp_A 10 EKPYKCEKCGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeECCCCCC
Confidence 46799999985
No 207
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=54.87 E-value=9.6 Score=24.80 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=29.4
Q ss_pred CCCCccccCCCCCCCCeEEEEEec---cCcEEEEEcCcccceeEe
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDK---KIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk---~~~~g~~~C~~C~~~~~~ 62 (87)
+.+-=.|+|-.|++-. .=.|.+ ..|+-.+.|..|...+-.
T Consensus 8 ~~~~l~FTC~~C~tRs--~k~iSk~aY~~GvViv~C~gC~n~HlI 50 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRS--SHTMSKQAYEKGTVLISCPHCKVRHLI 50 (100)
T ss_dssp CEEEEEEEETTTTEEE--EEEEEHHHHHTSEEEEECTTTCCEEES
T ss_pred CcEEEEEEccCCCCcc--hhhcCHHHhhCCEEEEEcCCCccceEe
Confidence 5677799999999843 223344 368999999999987543
No 208
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=54.18 E-value=4.5 Score=21.19 Aligned_cols=11 Identities=18% Similarity=0.966 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 28 ~~~~~C~~C~~ 38 (60)
T 2adr_A 28 EKPYPCGLCNR 38 (60)
T ss_dssp SCSEECTTTCC
T ss_pred CCCccCCCCCC
Confidence 45789999985
No 209
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=54.14 E-value=3.5 Score=21.85 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=6.9
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
-|.||.|-.
T Consensus 5 GFiCP~C~~ 13 (34)
T 3mjh_B 5 GFICPQCMK 13 (34)
T ss_dssp EEECTTTCC
T ss_pred ccCCcHHHH
Confidence 389999953
No 210
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=53.67 E-value=9.1 Score=24.13 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=26.5
Q ss_pred cCCCCCCccc---cCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEe
Q 035653 18 KGMEKLDTQF---QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 18 k~~~kl~~~F---~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~ 62 (87)
+-.+...+.| .||-|+++ ++.+.... ..+.|.+||..-..
T Consensus 23 ~Lv~~PnS~Fm~VkCp~C~~~---q~VFSha~--t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 23 TLVQGPRSYFLDVKCPGCLNI---TTVFSHAQ--TAVTCESCSTILCT 65 (82)
T ss_dssp SSSCCCCCCEEEEECTTSCSC---EEEESBCS--SCCCCSSSCCCCEE
T ss_pred eeccCCCCcEEEEECCCCCCe---eEEEecCC--eEEEccccCCEEec
Confidence 3344455666 69999994 45554443 56799999976544
No 211
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.44 E-value=4.9 Score=19.96 Aligned_cols=12 Identities=17% Similarity=0.733 Sum_probs=9.4
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2ep0_A 9 GEKPYKCDVCHK 20 (46)
T ss_dssp TCCSEECSSSCC
T ss_pred CCCCeeCcccCc
Confidence 356799999985
No 212
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.42 E-value=4.7 Score=20.02 Aligned_cols=11 Identities=36% Similarity=0.933 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2yso_A 10 EKSHQCRECGE 20 (46)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEEccccCh
Confidence 46799999985
No 213
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=53.21 E-value=6 Score=26.21 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=12.3
Q ss_pred CCCCCCCCeEEEEEeccCcEEEEEcCccc
Q 035653 29 CPFCGHGTSVECRIDKKIQIGEAFCWNCL 57 (87)
Q Consensus 29 CPfC~~~~sV~v~idk~~~~g~~~C~~C~ 57 (87)
||.||+.. .+.+-.....-.-.|..||
T Consensus 6 C~~CG~~~--~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 6 CSQCGGEV--ILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CTTTCCBC--EEECCTTCSSCEEEETTTT
T ss_pred CchhCCcc--ccccccCCCCcceECCCCC
Confidence 77777642 3333111122234566666
No 214
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=53.06 E-value=0.88 Score=31.00 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCccccCCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
+.+.=.||.|+.+.+.-+ +++.+-.+.|..||...
T Consensus 100 I~~yVlC~~C~sPdT~l~---k~~r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 100 LKAYVECSTCKSLDTILK---KEKKSWYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSCCSSSSSCCCSC---SSCSTTTSSCCC-----
T ss_pred HHHeeECCCCCCcCcEEE---EeCCeEEEEecCCCCCC
Confidence 345567999999876544 35667789999999753
No 215
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.81 E-value=3.9 Score=20.34 Aligned_cols=11 Identities=27% Similarity=0.972 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en6_A 10 EKPYGCNECGK 20 (46)
T ss_dssp SCCEEETTTTE
T ss_pred CcCeECCCCCc
Confidence 56799999985
No 216
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.51 E-value=4 Score=20.33 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en1_A 10 EKPFKCEECGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeeCCCCCc
Confidence 56799999985
No 217
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.50 E-value=4 Score=20.25 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eoe_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCSSEETTTTE
T ss_pred CCCeECCCcCh
Confidence 56799999985
No 218
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=52.45 E-value=4.6 Score=20.84 Aligned_cols=11 Identities=18% Similarity=0.954 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 27 ~~~~~C~~C~~ 37 (57)
T 1bbo_A 27 VRPYHCTYCNF 37 (57)
T ss_dssp CCCEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45688888875
No 219
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=52.28 E-value=5.7 Score=26.29 Aligned_cols=33 Identities=12% Similarity=-0.073 Sum_probs=18.9
Q ss_pred CccccCCC-CCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 24 DTQFQCPF-CGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPf-C~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
...|.|+. ||+ -|++ + ..+-+.++| ||+..+.-
T Consensus 5 ~~fYkC~~~CGn--ivev-~--~~g~~~l~C--CG~~m~~l 38 (128)
T 1y07_A 5 LSFFLQKESAGF--FLGM-D--APAGSSVAC--GSEVLRAV 38 (128)
T ss_dssp EEEECC-----C--EEEE-S--CCTTCEEEE--TTEEEECC
T ss_pred CcEEECCCCCCC--EEEE-E--cCCCcceee--cCcccccc
Confidence 35899999 987 2433 2 356678888 88876553
No 220
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=51.05 E-value=21 Score=28.04 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=24.6
Q ss_pred CccccCCCCCCCCeEEEEEe-----ccCcEEEEEcCccccee
Q 035653 24 DTQFQCPFCGHGTSVECRID-----KKIQIGEAFCWNCLERF 60 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~id-----k~~~~g~~~C~~C~~~~ 60 (87)
.-.-.||.||+.......+. +.--+-...|..||.+.
T Consensus 218 ~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 218 QFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred eecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 34567999998655443332 22346778999999876
No 221
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.98 E-value=4.2 Score=25.40 Aligned_cols=8 Identities=50% Similarity=1.605 Sum_probs=6.3
Q ss_pred cCCCCCCC
Q 035653 28 QCPFCGHG 35 (87)
Q Consensus 28 ~CPfC~~~ 35 (87)
.||.||.+
T Consensus 49 ~CPvCgs~ 56 (112)
T 1l8d_A 49 KCPVCGRE 56 (112)
T ss_dssp ECTTTCCE
T ss_pred CCCCCCCc
Confidence 59999874
No 222
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=50.80 E-value=5.3 Score=22.80 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=12.5
Q ss_pred CCCCccccCCCCCCCC
Q 035653 21 EKLDTQFQCPFCGHGT 36 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~ 36 (87)
..++..|.||.|...-
T Consensus 3 ~~~~~~~~C~IC~~~~ 18 (78)
T 1t1h_A 3 PEFPEYFRCPISLELM 18 (78)
T ss_dssp CCCSSSSSCTTTSCCC
T ss_pred cCCcccCCCCCccccc
Confidence 3578899999998743
No 223
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=50.66 E-value=12 Score=23.28 Aligned_cols=8 Identities=50% Similarity=1.489 Sum_probs=4.7
Q ss_pred cCCCCCCC
Q 035653 28 QCPFCGHG 35 (87)
Q Consensus 28 ~CPfC~~~ 35 (87)
.||-|+++
T Consensus 4 ~CP~C~~~ 11 (81)
T 2jrp_A 4 TCPVCHHA 11 (81)
T ss_dssp CCSSSCSC
T ss_pred CCCCCCCc
Confidence 46666654
No 224
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=50.40 E-value=8.8 Score=24.64 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=15.8
Q ss_pred EEEEEcCcccceeEee--cCCC
Q 035653 48 IGEAFCWNCLERFCTQ--IHAL 67 (87)
Q Consensus 48 ~g~~~C~~C~~~~~~~--i~~L 67 (87)
.+.+.|..||..|-.. |+-|
T Consensus 51 ~~~LvC~~c~~~YPI~dGIPvm 72 (97)
T 2k5r_A 51 HEALITRDRKQVFRIEDSIPVL 72 (97)
T ss_dssp SEEEECTTSCEEEEEETTEEEC
T ss_pred CCeEEcCCCCCCccccCCCccc
Confidence 5889999999999765 5443
No 225
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=49.82 E-value=6.6 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=18.0
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEe
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~ 62 (87)
.||.|+..--.. ...+ ..+|+.||..|.+
T Consensus 115 ~Cp~Cg~g~fma---~h~d---R~~CGkC~~t~~~ 143 (189)
T 2xzm_9 115 GCPKCGPGIFMA---KHYD---RHYCGKCHLTLKI 143 (189)
T ss_dssp ECSTTCSSCEEE---ECSS---CEEETTTCCCBCC
T ss_pred cCCccCCCcccc---CccC---CCccCCceeEEEe
Confidence 599999742222 1111 3499999998743
No 226
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=49.38 E-value=6.4 Score=20.55 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=8.0
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 39 ~k~~~C~~C~k 49 (54)
T 2eps_A 39 ERPHKCQVWVS 49 (54)
T ss_dssp CCCCCSSSSCC
T ss_pred CCCccCCCCCC
Confidence 45688888875
No 227
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.12 E-value=5.8 Score=21.96 Aligned_cols=40 Identities=10% Similarity=0.293 Sum_probs=22.7
Q ss_pred CCccccCCCCCCCCeEEEEEec------cCcEEEEEcCcccceeEe
Q 035653 23 LDTQFQCPFCGHGTSVECRIDK------KIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk------~~~~g~~~C~~C~~~~~~ 62 (87)
-++.|.|+.|+..=+-.-.+.. ........|..|+..|..
T Consensus 12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~ 57 (77)
T 2ct1_A 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR 57 (77)
T ss_dssp CCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESS
T ss_pred CCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCC
Confidence 3578999999962110000000 011134689999998864
No 228
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=49.08 E-value=5.9 Score=21.56 Aligned_cols=7 Identities=57% Similarity=1.393 Sum_probs=3.3
Q ss_pred ccCCCCC
Q 035653 27 FQCPFCG 33 (87)
Q Consensus 27 F~CPfC~ 33 (87)
|.|+.|+
T Consensus 50 ~~C~~C~ 56 (73)
T 1f2i_G 50 FQCRICM 56 (73)
T ss_dssp EECTTTC
T ss_pred eECCCCC
Confidence 4444444
No 229
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=48.32 E-value=31 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=28.2
Q ss_pred ccccCCCCCC----CCeEEEEEeccCc-EEEEEcCcccceeEeecC
Q 035653 25 TQFQCPFCGH----GTSVECRIDKKIQ-IGEAFCWNCLERFCTQIH 65 (87)
Q Consensus 25 ~~F~CPfC~~----~~sV~v~idk~~~-~g~~~C~~C~~~~~~~i~ 65 (87)
+.+-|..|+. ..+.+|.|..... .-.+.|..||-...+++.
T Consensus 64 KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~~ 109 (120)
T 1x0t_A 64 KRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPYL 109 (120)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEECC
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEccC
Confidence 5668999986 2345666654321 567899999987766654
No 230
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.21 E-value=5.9 Score=21.71 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=23.7
Q ss_pred CCCccccCCCCCCCCeEEEEEe----ccCcEEEEEcCcccceeEee
Q 035653 22 KLDTQFQCPFCGHGTSVECRID----KKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~id----k~~~~g~~~C~~C~~~~~~~ 63 (87)
.-++.|.|+.|+..-+-.-.+. .-.+.-...|..|+..|...
T Consensus 10 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp TTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSH
T ss_pred CCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCH
Confidence 3457899999996211000000 01122347899999988653
No 231
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=46.91 E-value=7 Score=27.02 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=5.4
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.+.|+.||+
T Consensus 155 ~~~C~~CG~ 163 (191)
T 1lko_A 155 KWRCRNCGY 163 (191)
T ss_dssp EEEETTTCC
T ss_pred eEEECCCCC
Confidence 556666665
No 232
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=46.01 E-value=8.5 Score=17.25 Aligned_cols=10 Identities=20% Similarity=0.756 Sum_probs=6.8
Q ss_pred ccccCC--CCCC
Q 035653 25 TQFQCP--FCGH 34 (87)
Q Consensus 25 ~~F~CP--fC~~ 34 (87)
+.|.|+ .|+.
T Consensus 2 k~~~C~~~~C~k 13 (32)
T 1zfd_A 2 RPYSCDHPGCDK 13 (32)
T ss_dssp CSBCCCCTTCCC
T ss_pred CCCcCcCCCCCC
Confidence 467787 6775
No 233
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.38 E-value=6.9 Score=21.61 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=22.2
Q ss_pred CccccCCCCCCCCeEEEEEec----cC---cEEEEEcCcccceeEe
Q 035653 24 DTQFQCPFCGHGTSVECRIDK----KI---QIGEAFCWNCLERFCT 62 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk----~~---~~g~~~C~~C~~~~~~ 62 (87)
++.|.|+.|+..-+-.-.+.. -. +.....|..|+..|..
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCC
Confidence 568999999962110000000 01 1234789999999865
No 234
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=45.24 E-value=6.6 Score=20.96 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.2
Q ss_pred chhhhhhhhHHH
Q 035653 69 EPIDIYAEWIDE 80 (87)
Q Consensus 69 epiDVYs~wiD~ 80 (87)
++|+.|++||++
T Consensus 14 ~ai~~~N~~ve~ 25 (36)
T 3hpw_C 14 EGMAEVARFIEM 25 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 679999999975
No 235
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.15 E-value=7.9 Score=24.61 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCCCccc---cCCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 21 EKLDTQF---QCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 21 ~kl~~~F---~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
+...+.| .||-|++ +++.+... ...+.|.+||..-
T Consensus 28 ~~PnS~Fm~VkCp~C~~---~~~VFShA--~t~V~C~~CgtvL 65 (86)
T 3iz6_X 28 QSPNSFFMDVKCQGCFN---ITTVFSHS--QTVVVCPGCQTVL 65 (86)
T ss_dssp -----CEEEEECTTTCC---EEEEETTC--SSCCCCSSSCCCC
T ss_pred cCCCCcEeEEECCCCCC---eeEEEecC--CcEEEccCCCCEe
Confidence 3344554 7999998 55556444 3567999999653
No 236
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=44.13 E-value=2.1 Score=24.62 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=21.8
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEeecCC
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQIHA 66 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~i~~ 66 (87)
+.|.|..||++-|- +.-+-.-.+.|..||.+--+++.+
T Consensus 2 ~iY~C~rCg~~fs~----~el~~lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 2 AVYRCGKCWKTFTD----EQLKVLPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp ---CCCCTTTTCCC----CCSCCCSSSCCTTTCCSCEECCCC
T ss_pred cEEEeeccCCCccH----HHHhhCCCcccCccCcEEEEEecC
Confidence 36788899885321 112234567899998876665543
No 237
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.83 E-value=8 Score=19.82 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.6
Q ss_pred CccccCCC--CCC
Q 035653 24 DTQFQCPF--CGH 34 (87)
Q Consensus 24 ~~~F~CPf--C~~ 34 (87)
+++|.|++ |+.
T Consensus 7 ekp~~C~~~~C~k 19 (38)
T 2eln_A 7 GILLKCPTDGCDY 19 (38)
T ss_dssp CCCEECSSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 46799986 986
No 238
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=43.82 E-value=7.8 Score=21.97 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=22.6
Q ss_pred CccccCCCCCCCCeEEEEEec----cCcEEEEEcCcccceeEee
Q 035653 24 DTQFQCPFCGHGTSVECRIDK----KIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk----~~~~g~~~C~~C~~~~~~~ 63 (87)
++.|.|+.|+..=+-.-.+.. -.+.....|..|+..|...
T Consensus 1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44 (88)
T ss_dssp CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCH
Confidence 367999999962110000000 0122346899999988653
No 239
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=43.11 E-value=7.2 Score=24.36 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=23.1
Q ss_pred cccCCCCCCCCeEEEEEec-cCcEEEEEcCcccceeEe
Q 035653 26 QFQCPFCGHGTSVECRIDK-KIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk-~~~~g~~~C~~C~~~~~~ 62 (87)
.+.|| || ....+..+- ..+.-.+.|..|.+.-.-
T Consensus 23 ~ypCr-CG--d~F~it~edL~~ge~iv~C~sCSL~I~V 57 (83)
T 1yop_A 23 TYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCSLMIDV 57 (83)
T ss_dssp EEEET-TT--EEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred EEeCC-CC--CeEEECHHHHhCCCEEEECCCCccEEEE
Confidence 46798 99 456666533 344557899999985443
No 240
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.48 E-value=7.9 Score=20.94 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=22.8
Q ss_pred CccccCCCCCCCCeEEEEEe----ccCcEEEEEcCcccceeEee
Q 035653 24 DTQFQCPFCGHGTSVECRID----KKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~id----k~~~~g~~~C~~C~~~~~~~ 63 (87)
++.|.|+.|+..-+-.-.+. .-.+.....|..|+..|...
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCH
Confidence 46799999996211000000 01122347899999988653
No 241
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=41.85 E-value=9.9 Score=16.93 Aligned_cols=9 Identities=44% Similarity=1.523 Sum_probs=5.7
Q ss_pred cccCC--CCCC
Q 035653 26 QFQCP--FCGH 34 (87)
Q Consensus 26 ~F~CP--fC~~ 34 (87)
.|.|+ .||.
T Consensus 2 p~~C~~~~C~k 12 (31)
T 1sp2_A 2 PFMCTWSYCGK 12 (31)
T ss_dssp CCBCCSTTCCC
T ss_pred CcCCcCCCCCc
Confidence 46676 6764
No 242
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=41.38 E-value=13 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=20.2
Q ss_pred cccCCCCCCCCeEEEEEeccCcE--EEEEcCcccceeEe
Q 035653 26 QFQCPFCGHGTSVECRIDKKIQI--GEAFCWNCLERFCT 62 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~~~~--g~~~C~~C~~~~~~ 62 (87)
.+.|| ||.. .. +.....- -.+.|..|.+.|.-
T Consensus 112 ~~~Cr-CG~~--f~--i~~~~l~~~~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 112 YLSCR-CGGK--YS--VSKDEAEEVSLISCDTCSLIIEL 145 (155)
T ss_dssp EEECS-SSCE--EE--EETTHHHHCCEEECSSSSCEEEE
T ss_pred EEcCC-CCCe--EE--ecHHHhCCCCEEECCCCceEEEE
Confidence 36798 9963 33 3333211 47899999988754
No 243
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=41.36 E-value=45 Score=21.68 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=28.1
Q ss_pred ccccCCCCCC----CCeEEEEEeccC-cEEEEEcCcccceeEeecC
Q 035653 25 TQFQCPFCGH----GTSVECRIDKKI-QIGEAFCWNCLERFCTQIH 65 (87)
Q Consensus 25 ~~F~CPfC~~----~~sV~v~idk~~-~~g~~~C~~C~~~~~~~i~ 65 (87)
+..-|..|+. ..+.+|.|.... ..-.+.|..||-...+++.
T Consensus 59 KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~~ 104 (123)
T 2k3r_A 59 KRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPYI 104 (123)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEECC
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEecC
Confidence 4567999986 234566665432 2567899999987666653
No 244
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=41.15 E-value=8.2 Score=27.09 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=7.3
Q ss_pred ccCCCCCCCCe
Q 035653 27 FQCPFCGHGTS 37 (87)
Q Consensus 27 F~CPfC~~~~s 37 (87)
..||.||+.++
T Consensus 187 ~~CP~C~~~k~ 197 (202)
T 1yuz_A 187 EKCPICFRPKD 197 (202)
T ss_dssp SBCTTTCCBGG
T ss_pred CCCCCCCCChH
Confidence 56777777653
No 245
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=41.05 E-value=8.8 Score=23.01 Aligned_cols=8 Identities=38% Similarity=1.298 Sum_probs=3.7
Q ss_pred cccCCCCC
Q 035653 26 QFQCPFCG 33 (87)
Q Consensus 26 ~F~CPfC~ 33 (87)
.|.|+.|+
T Consensus 56 ~~~C~~C~ 63 (85)
T 2lv2_A 56 VFPCKYCP 63 (85)
T ss_dssp SEECTTSS
T ss_pred ccCCCCCC
Confidence 44444444
No 246
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=40.82 E-value=14 Score=25.37 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=14.8
Q ss_pred cEEEEEcCccccee--EeecCCC
Q 035653 47 QIGEAFCWNCLERF--CTQIHAL 67 (87)
Q Consensus 47 ~~g~~~C~~C~~~~--~~~i~~L 67 (87)
..|.|.|++||+.. ++....+
T Consensus 66 ~~g~I~C~~Cgq~WG~~m~yk~~ 88 (145)
T 3eqt_A 66 PGGVISCRNCGEVWGLQMIYKSV 88 (145)
T ss_dssp EEEEEEETTTCCEEEEEEEETTE
T ss_pred CCcEEEchhhChhhHhhEEeccc
Confidence 36899999999874 4444433
No 247
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=40.78 E-value=2.8 Score=26.78 Aligned_cols=9 Identities=44% Similarity=1.335 Sum_probs=7.5
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
-|+||+|.+
T Consensus 30 dy~Cp~C~~ 38 (184)
T 4dvc_A 30 SFYCPHCNT 38 (184)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHhHHH
Confidence 489999975
No 248
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=40.54 E-value=2.8 Score=25.88 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=18.4
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEe
Q 035653 27 FQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 27 F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~ 62 (87)
..||.|...-...--.....+...+.|.+|...|+.
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 378888874321111111122345678888776643
No 249
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=40.54 E-value=19 Score=22.45 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=22.7
Q ss_pred cccCCCCCCCCeEEEEEecc---------CcEEEEEcCcccceeEe
Q 035653 26 QFQCPFCGHGTSVECRIDKK---------IQIGEAFCWNCLERFCT 62 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk~---------~~~g~~~C~~C~~~~~~ 62 (87)
.|+|-.||. .|.+. .+-..++|--|+..|..
T Consensus 10 ~F~C~~Cgd------~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~ 49 (79)
T 1wjv_A 10 FFTCNACGE------SVKKIQVEKHVSNCRNCECLSCIDCGKDFWG 49 (79)
T ss_dssp EEEESSSCC------EEETTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred EEEcCCCCC------eeecccchhHHhhCCCCCcEEecccCCeeCC
Confidence 699999995 23332 23458999999999964
No 250
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=40.36 E-value=11 Score=23.24 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=7.1
Q ss_pred CccccCCCCC
Q 035653 24 DTQFQCPFCG 33 (87)
Q Consensus 24 ~~~F~CPfC~ 33 (87)
++.|.|++|+
T Consensus 32 ~~~~~C~~c~ 41 (155)
T 2gli_A 32 RKEFVCHWGG 41 (155)
T ss_dssp SSCCCCCBTT
T ss_pred CcceeCCCCC
Confidence 4678888754
No 251
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=39.88 E-value=9.6 Score=20.76 Aligned_cols=10 Identities=30% Similarity=1.046 Sum_probs=5.7
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.|+.
T Consensus 56 ~~~~C~~C~~ 65 (82)
T 2kmk_A 56 KPHKCQVCGK 65 (82)
T ss_dssp CCEECTTTSC
T ss_pred CCCcCCCcch
Confidence 3466666653
No 252
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=39.62 E-value=11 Score=17.84 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=7.9
Q ss_pred CccccCCC--CCC
Q 035653 24 DTQFQCPF--CGH 34 (87)
Q Consensus 24 ~~~F~CPf--C~~ 34 (87)
++.|.|++ |+.
T Consensus 6 ~k~~~C~~~~C~k 18 (37)
T 1va1_A 6 KKQHICHIQGCGK 18 (37)
T ss_dssp CCCEECCSTTCCC
T ss_pred CCCCCCCCCCCCC
Confidence 45688885 875
No 253
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.59 E-value=10 Score=20.66 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCCccccCCCCCCCCeEEEEEec----cCcEEEEEcCcccceeEee
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDK----KIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk----~~~~g~~~C~~C~~~~~~~ 63 (87)
.-++.|.|+.|+..-+-.-.+.. -.+.-...|..|+..|...
T Consensus 13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCH
T ss_pred CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCH
Confidence 44678999999963211100100 1122336899999988653
No 254
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.43 E-value=10 Score=20.84 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=23.9
Q ss_pred CCCccccCCCCCCCCeEEEEEec----cCcEEEEEcCcccceeEe
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDK----KIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk----~~~~g~~~C~~C~~~~~~ 62 (87)
.-++.|.|+.|+..-.-.-.+.. -.+.....|..|+..|..
T Consensus 14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 34578999999963211111100 112234689999998865
No 255
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.74 E-value=54 Score=19.94 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=25.5
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
.++..-.|..|+...+ ...-..|.|-.|...|-+.
T Consensus 21 ~~~~~~~C~vC~~~~s-------~~~~~ll~CD~C~~~fH~~ 55 (88)
T 2l43_A 21 LIDEDAVCSICMDGES-------QNSNVILFCDMCNLAVHQE 55 (88)
T ss_dssp CCCCCCCCSSCCSSSS-------CSEEEEEECSSSCCCCCHH
T ss_pred cCCCCCcCCcCCCCCC-------CCCCCEEECCCCCchhhcc
Confidence 3456678999997532 2345788999999998665
No 256
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.39 E-value=10 Score=20.96 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCccccCCCCCCCCeEEEEEec----cCcE----EEEEcCcccceeEe
Q 035653 23 LDTQFQCPFCGHGTSVECRIDK----KIQI----GEAFCWNCLERFCT 62 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk----~~~~----g~~~C~~C~~~~~~ 62 (87)
-++.|.|+.|+..-+-.-.+.. .... ....|..|+..|..
T Consensus 12 ~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~ 59 (86)
T 1x6h_A 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59 (86)
T ss_dssp CCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESC
T ss_pred CCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCC
Confidence 3578999999962110000000 0111 34789999998865
No 257
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=38.21 E-value=14 Score=23.53 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=26.5
Q ss_pred CccccC-----CCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 24 DTQFQC-----PFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~C-----PfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
.+.+.| |+ +|+. |-+.|++. |.+.|.=||..|...
T Consensus 22 ~~~v~CdG~~~pl-gHPr-VyL~i~~~---g~~~CpYCg~~y~~~ 61 (87)
T 2jz8_A 22 VKEFMCVGATQPF-DHPH-IFIDMGST---DEKICPYCSTLYRYD 61 (87)
T ss_dssp CSEEECCCSSCSS-SSSS-CEEECTTC---CEECCTTTCCEEECC
T ss_pred CcEEEcCCCCCCC-CCCE-EEEEcCCC---CeEECCCCCCEeEcC
Confidence 345667 34 7876 88888663 889999999999765
No 258
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.15 E-value=12 Score=21.55 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=9.5
Q ss_pred ccccCCCCCCC
Q 035653 25 TQFQCPFCGHG 35 (87)
Q Consensus 25 ~~F~CPfC~~~ 35 (87)
..|.||.||..
T Consensus 11 ~~~~CPrCn~~ 21 (49)
T 2e72_A 11 GRKICPRCNAQ 21 (49)
T ss_dssp SCCCCTTTCCC
T ss_pred CceeCCccccc
Confidence 78999999974
No 259
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.74 E-value=12 Score=18.89 Aligned_cols=10 Identities=40% Similarity=1.035 Sum_probs=6.6
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
..|.||.|..
T Consensus 2 ~k~~CpvCk~ 11 (28)
T 2jvx_A 2 SDFCCPKCQY 11 (28)
T ss_dssp CCEECTTSSC
T ss_pred CcccCccccc
Confidence 3577777764
No 260
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=37.43 E-value=18 Score=21.79 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=20.6
Q ss_pred CCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 33 GHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 33 ~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
+|+. |-+.||.+ .+.+.|.-||+.|..+
T Consensus 26 gHPr-Vyl~ld~~--~g~~~CpYCg~~f~l~ 53 (67)
T 2jrr_A 26 GHPR-VWLQIPED--TGWVECPYCDCKYVLK 53 (67)
T ss_dssp EEEE-EEEECCTT--TSEEEETTTTEEEEET
T ss_pred CCCE-EEEEccCC--CCeEECCCCCCEEEEC
Confidence 5653 67777543 4778999999999876
No 261
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.40 E-value=11 Score=20.49 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=6.8
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 66 ~~~~~C~~C~k 76 (79)
T 2dlk_A 66 TRDYICEFSGP 76 (79)
T ss_dssp SCCCSCCSSSC
T ss_pred CCCeeCCCCCC
Confidence 34577777764
No 262
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.99 E-value=13 Score=21.47 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=10.4
Q ss_pred CCccccCCCCCCC
Q 035653 23 LDTQFQCPFCGHG 35 (87)
Q Consensus 23 l~~~F~CPfC~~~ 35 (87)
-++.|.|+.|+..
T Consensus 10 ~ekpy~C~~CgK~ 22 (66)
T 2epp_A 10 EAGILPCGLCGKV 22 (66)
T ss_dssp CCCCCCCTTTCCC
T ss_pred CccCcCCCCCCCc
Confidence 3578999999963
No 263
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=36.93 E-value=8.5 Score=27.87 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=20.5
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCcccce
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLER 59 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~ 59 (87)
..|.|+.||+. +.+.++...-.--..|..|+..
T Consensus 133 ~~f~C~~C~~~--~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 133 AVFECRGCMRH--HAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEETTTCCE--EEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEcCCCCCE--EEEEecCCcccCCCcCCCCCCC
Confidence 57999999985 3444432111112479999976
No 264
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=36.93 E-value=12 Score=21.27 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=7.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 73 ~~~~~C~~C~~ 83 (100)
T 2ebt_A 73 AKPFQCGVCNR 83 (100)
T ss_dssp CCSCBCSSSCC
T ss_pred CCCeECCCCcC
Confidence 34588888875
No 265
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=36.49 E-value=35 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=20.8
Q ss_pred ccCCCCCCCCeEEEEEe------ccCcEEEEEcCcccceeE
Q 035653 27 FQCPFCGHGTSVECRID------KKIQIGEAFCWNCLERFC 61 (87)
Q Consensus 27 F~CPfC~~~~sV~v~id------k~~~~g~~~C~~C~~~~~ 61 (87)
-.||.|+. +.++.-+- +.--+-...|..||.++.
T Consensus 13 s~Cp~C~~-~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ 52 (404)
T 2qkd_A 13 SLCMNCYR-NGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT 52 (404)
T ss_dssp EECTTTSS-EEEEEEEEEEETTTEEEEEEEEECTTTCCEEE
T ss_pred ccCCCCCC-CceEEEEEEcCCCCceEEEEEEECCCCCCchh
Confidence 35999995 44433221 122356789999998753
No 266
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=36.19 E-value=15 Score=25.26 Aligned_cols=17 Identities=0% Similarity=-0.238 Sum_probs=13.5
Q ss_pred CCCCCCccccCCCCCCC
Q 035653 19 GMEKLDTQFQCPFCGHG 35 (87)
Q Consensus 19 ~~~kl~~~F~CPfC~~~ 35 (87)
....+|..|.||.|..-
T Consensus 201 ~~~~~~~~~~c~i~~~~ 217 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFEL 217 (281)
T ss_dssp SCCCCCSTTBCTTTCSB
T ss_pred cCCCCCcccCCcCcCCH
Confidence 34577899999999864
No 267
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.12 E-value=13 Score=17.31 Aligned_cols=10 Identities=40% Similarity=1.129 Sum_probs=6.7
Q ss_pred ccccCCC--CCC
Q 035653 25 TQFQCPF--CGH 34 (87)
Q Consensus 25 ~~F~CPf--C~~ 34 (87)
+.|.|++ |+.
T Consensus 5 k~~~C~~~~C~k 16 (38)
T 1bhi_A 5 KPFLCTAPGCGQ 16 (38)
T ss_dssp CCEECCCTTTCC
T ss_pred cceECCCCCCCc
Confidence 4677874 774
No 268
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=35.42 E-value=17 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.9
Q ss_pred EEEEEcCcccceeEee
Q 035653 48 IGEAFCWNCLERFCTQ 63 (87)
Q Consensus 48 ~g~~~C~~C~~~~~~~ 63 (87)
-|.+.|..||-.|-..
T Consensus 97 EG~L~Cp~cgr~ypI~ 112 (125)
T 3q87_A 97 EGSLRCDMCGLIYPIK 112 (125)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCCEeecc
Confidence 4899999999999765
No 269
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.35 E-value=13 Score=20.91 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=7.7
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 63 ~~~~~C~~C~~ 73 (95)
T 2yt9_A 63 GKPYICQSCGK 73 (95)
T ss_dssp CSSBCCSSSCC
T ss_pred CCceECCCccc
Confidence 35688888875
No 270
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.65 E-value=13 Score=20.04 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=23.9
Q ss_pred CccccCCCCCCCCeEEEEEecc-----CcEEEEEcC-cccceeEee
Q 035653 24 DTQFQCPFCGHGTSVECRIDKK-----IQIGEAFCW-NCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~-----~~~g~~~C~-~C~~~~~~~ 63 (87)
.+.|.|++|+.. +. .-... .+.-...|. .||..|...
T Consensus 8 ~~~~~C~~C~k~--f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~ 50 (66)
T 2eod_A 8 KRTQPCTYCTKE--FV-FDTIQSHQYQCPRLPVACPNQCGVGTVAR 50 (66)
T ss_dssp CCEEECSSSCCE--EE-HHHHHHHHHHCSSSEEECTTCCSCCEEET
T ss_pred CCCeeccccCCc--cC-HHHHHHHHHHcCCcCccCCcccCcccccH
Confidence 467999999963 33 21111 223357899 999998764
No 271
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=34.59 E-value=13 Score=20.60 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=5.0
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.|.|+.|+.
T Consensus 62 ~~~C~~C~~ 70 (90)
T 1a1h_A 62 PFACDICGR 70 (90)
T ss_dssp CEECTTTCC
T ss_pred CccCCCCCc
Confidence 455666553
No 272
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=34.59 E-value=18 Score=24.97 Aligned_cols=36 Identities=6% Similarity=-0.035 Sum_probs=26.4
Q ss_pred CCCccccCCCCCCCCeEEEEEecc------------CcEEEEEcCccc
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKK------------IQIGEAFCWNCL 57 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~------------~~~g~~~C~~C~ 57 (87)
.-.=++.|.+|+.+.|+++.-... ..+...-||-+.
T Consensus 66 ~aNfv~KCk~C~re~Si~i~~~~~~~~y~~~d~~k~~~i~~FDCRGlE 113 (164)
T 1zso_A 66 TANFMIKWTEYPKYSTINFVNTKNSCSYEEVNNNEWRDFASFECRGIE 113 (164)
T ss_dssp EESEEECCSSSSCCEEEEEECCTTTTEEEGGGTTSCEEEEEEEEESEE
T ss_pred ceeEEEeccccCCcceEEEEeCCCCcccccccCCCceEEEEEECCCee
Confidence 345689999999999998844332 136788899885
No 273
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=34.05 E-value=20 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.8
Q ss_pred EEEEcCcccceeEeecCCCCchhhhh
Q 035653 49 GEAFCWNCLERFCTQIHALTEPIDIY 74 (87)
Q Consensus 49 g~~~C~~C~~~~~~~i~~L~epiDVY 74 (87)
-.-.|..||+.|.-+--+-.|+=-||
T Consensus 50 F~FkCP~CgEEFyG~~Lp~~EaeKVF 75 (95)
T 2k5c_A 50 FVFKCPVCGEEFYGKTLPRREAEKVF 75 (95)
T ss_dssp SEEECTTTCCEEETTSSCTTTHHHHH
T ss_pred HhhcCCCccHHHhcccCChHHHHHHH
Confidence 35799999999998877777776665
No 274
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.66 E-value=14 Score=20.87 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=18.7
Q ss_pred CccccCCCCCCCCeEEEEEec----cCcEEEEEcCcccceeEe
Q 035653 24 DTQFQCPFCGHGTSVECRIDK----KIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk----~~~~g~~~C~~C~~~~~~ 62 (87)
++.|.|+.|+..-.-.-.+.. -.+.....|..|+..|..
T Consensus 6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 48 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD 48 (96)
T ss_dssp CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESS
T ss_pred CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCC
Confidence 356888888752111000000 111223577777777644
No 275
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=33.10 E-value=13 Score=24.00 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=19.2
Q ss_pred CccccCCCCCCCCeEEEEEeccCcEEEEEcCcccc
Q 035653 24 DTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLE 58 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~ 58 (87)
.+-..||.||. .+..+ ++. .|+.||.
T Consensus 14 KtH~lCrRCG~-~sfH~--qK~------~CgkCGY 39 (97)
T 2zkr_2 14 KTHTLCRRCGS-KAYHL--QKS------TCGKCGY 39 (97)
T ss_dssp CCEECCTTTCS-SCEET--TSC------CBTTTCT
T ss_pred CCCCcCCCCCC-ccCcC--ccc------cCcccCC
Confidence 56789999998 45633 333 8999995
No 276
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.90 E-value=14 Score=19.56 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
-++.|.|+.|+.. ..-.-.... .....|..||..|...
T Consensus 15 ~~~~~~C~~C~k~--f~~~~~l~~-~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 15 GDRSQKCSKCGII--FIRRSTLSR-RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp CCSEEECSSSCCE--EECCCCCCC-SSSCCCHHHHHTCSCC
T ss_pred CCCCeeCCcccch--hCCHHHhCc-CCCCCCCCCChhhcCH
Confidence 3578999999963 221111111 2236899999888654
No 277
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.71 E-value=15 Score=21.43 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCccccCCCCCCCCe-EEEEEec----cCc-EEEEEcCcccceeEe
Q 035653 22 KLDTQFQCPFCGHGTS-VECRIDK----KIQ-IGEAFCWNCLERFCT 62 (87)
Q Consensus 22 kl~~~F~CPfC~~~~s-V~v~idk----~~~-~g~~~C~~C~~~~~~ 62 (87)
.-++.|.|+.|+..-+ -.-.|.. -.+ .....|..|+..|..
T Consensus 20 ~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp TTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred ccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCC
Confidence 3457899999997421 1111100 011 223589999998865
No 278
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.66 E-value=11 Score=21.02 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.6
Q ss_pred cCCCCCCccccCCCCCCCC
Q 035653 18 KGMEKLDTQFQCPFCGHGT 36 (87)
Q Consensus 18 k~~~kl~~~F~CPfC~~~~ 36 (87)
.....++..+.||.|...-
T Consensus 12 ~~~~~~~~~~~C~IC~~~~ 30 (73)
T 2ysl_A 12 QFVNKLQEEVICPICLDIL 30 (73)
T ss_dssp CCCCCCCCCCBCTTTCSBC
T ss_pred HHHHhCccCCEeccCCccc
Confidence 3456788899999998743
No 279
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=32.62 E-value=14 Score=26.50 Aligned_cols=50 Identities=12% Similarity=0.309 Sum_probs=33.1
Q ss_pred CCCCeEEEEEeccCcEEEEEcC-cccceeE-eecCCCCc-hhhhhhhhHHHHHH
Q 035653 33 GHGTSVECRIDKKIQIGEAFCW-NCLERFC-TQIHALTE-PIDIYAEWIDECER 83 (87)
Q Consensus 33 ~~~~sV~v~idk~~~~g~~~C~-~C~~~~~-~~i~~L~e-piDVYs~wiD~~e~ 83 (87)
|..+.+...+++ .|+....|. .||..++ |.+.-... +-+-|..|+....+
T Consensus 78 Gr~n~l~~~~~~-pG~y~g~CsE~CG~~Hs~M~~~v~vv~~~~~F~~Wl~~~~~ 130 (205)
T 1cyx_A 78 GMQTRLHLIANE-PGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQ 130 (205)
T ss_dssp TCCEEEEECCSS-SEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHT
T ss_pred CceEEEEEEeCC-CeEEEEEcccccccchhhceEEEEEECCHHHHHHHHHHhhh
Confidence 344455555443 578889997 5999864 45554445 56889999987554
No 280
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=32.57 E-value=15 Score=26.24 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=8.6
Q ss_pred CCccccCCCCCCC
Q 035653 23 LDTQFQCPFCGHG 35 (87)
Q Consensus 23 l~~~F~CPfC~~~ 35 (87)
+-.-|.||||+-.
T Consensus 151 ~~~~f~Cp~C~~p 163 (192)
T 2avu_E 151 PVGSFACSLCQPP 163 (192)
T ss_dssp CSSCCCCTTC---
T ss_pred CCCCCcCCCCCCc
Confidence 4578999999953
No 281
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.48 E-value=15 Score=21.55 Aligned_cols=11 Identities=36% Similarity=1.250 Sum_probs=9.4
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 78 ~~~~~C~~C~k 88 (115)
T 2dmi_A 78 QKVLKCMYCGH 88 (115)
T ss_dssp CSSCBCSSSCC
T ss_pred CcceECCCCCC
Confidence 67899999986
No 282
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=31.91 E-value=23 Score=20.37 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCCccccCCCCCCCCeEEEEEe----ccCcEEEEEcCcccceeEe
Q 035653 22 KLDTQFQCPFCGHGTSVECRID----KKIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~id----k~~~~g~~~C~~C~~~~~~ 62 (87)
.-++.|.|+.|+..-.-.-.+. .-.+.....|..|+..|..
T Consensus 13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 4456799999986311000000 0112234689999988854
No 283
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=31.79 E-value=13 Score=15.85 Aligned_cols=6 Identities=50% Similarity=1.004 Sum_probs=2.7
Q ss_pred ccccee
Q 035653 55 NCLERF 60 (87)
Q Consensus 55 ~C~~~~ 60 (87)
.||..|
T Consensus 9 ~C~k~f 14 (29)
T 2ab3_A 9 NCGRSF 14 (29)
T ss_dssp TTCEEE
T ss_pred cCcCcc
Confidence 444444
No 284
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=31.45 E-value=10 Score=31.35 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=0.4
Q ss_pred cccCCCCCCCCeEEEEEec-cCcEEEEEcCc---ccceeEee
Q 035653 26 QFQCPFCGHGTSVECRIDK-KIQIGEAFCWN---CLERFCTQ 63 (87)
Q Consensus 26 ~F~CPfC~~~~sV~v~idk-~~~~g~~~C~~---C~~~~~~~ 63 (87)
+=.||.||++ + -+ ..+-+.+.|.+ |.....-.
T Consensus 415 P~~CP~Cgs~--l----~~~~~~~~~~rC~n~~~CpaQ~~~~ 450 (615)
T 3sgi_A 415 PTTCPECGSP--L----APEKEGDADIRCPNARGCPGQLRER 450 (615)
T ss_dssp C-----------------------------------------
T ss_pred CCCCCCCCCe--e----eecCCCCEEEEcCCCCCCHHHHHHH
Confidence 3369999985 2 12 34556789976 87654433
No 285
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.07 E-value=21 Score=23.16 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=15.7
Q ss_pred EEEEEcCcccceeEeecCCC
Q 035653 48 IGEAFCWNCLERFCTQIHAL 67 (87)
Q Consensus 48 ~g~~~C~~C~~~~~~~i~~L 67 (87)
-.++.|..||..++.....+
T Consensus 88 H~HliC~~Cg~v~~~~~~~~ 107 (145)
T 3eyy_A 88 HIHLVCRDCTNVIEADLSVA 107 (145)
T ss_dssp SEEEEESSSSCEEEECGGGG
T ss_pred ceEEEECCCCCEEEecCccH
Confidence 37899999999988765444
No 286
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=31.03 E-value=56 Score=23.48 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.0
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCccc
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCL 57 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~ 57 (87)
.||.||.. -..+++ .+.+.-.|..|+
T Consensus 236 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSI-IEKTTL---SSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCE-eEEEEE---CCCCeEECCCCC
Confidence 59999984 233333 578889999996
No 287
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.91 E-value=18 Score=17.75 Aligned_cols=9 Identities=0% Similarity=-0.525 Sum_probs=5.9
Q ss_pred CccccCCCC
Q 035653 24 DTQFQCPFC 32 (87)
Q Consensus 24 ~~~F~CPfC 32 (87)
++.|.|+.|
T Consensus 40 ~k~~~C~~C 48 (48)
T 2ent_A 40 VKPSGPSSG 48 (48)
T ss_dssp CCSCSSCCC
T ss_pred CCCCCCCCC
Confidence 456777766
No 288
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=30.67 E-value=57 Score=23.56 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=19.2
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCccc
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCL 57 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~ 57 (87)
.||.||.. -..+++ .+.+.-.|..|+
T Consensus 242 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTP-IVATKH---AQRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCE-eeEEEE---CCCceEECCCCC
Confidence 49999984 233333 678889999996
No 289
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=30.17 E-value=59 Score=23.48 Aligned_cols=27 Identities=26% Similarity=0.663 Sum_probs=19.7
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCcccc
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCLE 58 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~ 58 (87)
.||.||.. -..+++ .+.+.-.|..|+.
T Consensus 244 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAE-IQKIKV---AGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTSC
T ss_pred CCCCCCCE-eeEEEE---CCCceEECCCCCC
Confidence 49999984 233333 6788999999974
No 290
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.71 E-value=18 Score=21.14 Aligned_cols=10 Identities=40% Similarity=0.726 Sum_probs=4.8
Q ss_pred EEcCccccee
Q 035653 51 AFCWNCLERF 60 (87)
Q Consensus 51 ~~C~~C~~~~ 60 (87)
..|..|+..|
T Consensus 67 ~~C~~C~~~f 76 (124)
T 2dlq_A 67 FTCSVCQETF 76 (124)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCCCcc
Confidence 3455555444
No 291
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=29.12 E-value=63 Score=23.45 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=19.1
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCccc
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCL 57 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~ 57 (87)
.||.||.. -..+++ .+.+.-.|..|+
T Consensus 247 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTP-IEKTVV---AGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCe-EEEEEE---CCCCeEECCCCC
Confidence 69999984 233333 578889999996
No 292
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=29.09 E-value=14 Score=21.45 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 23 LDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 23 l~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
-+....|+.|+... .+...|-|-.|...|.+.
T Consensus 15 ~~~~~~C~~C~~~~---------~~~~mi~CD~C~~wfH~~ 46 (75)
T 2k16_A 15 GNQIWICPGCNKPD---------DGSPMIGCDDCDDWYHWP 46 (75)
T ss_dssp SCEEECBTTTTBCC---------SSCCEEECSSSSSEEEHH
T ss_pred CCCCcCCCCCCCCC---------CCCCEEEcCCCCcccccc
Confidence 34566799999742 244578999999999887
No 293
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.96 E-value=18 Score=21.06 Aligned_cols=10 Identities=20% Similarity=1.029 Sum_probs=5.8
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.|+.
T Consensus 64 ~~~~C~~C~~ 73 (110)
T 2csh_A 64 KPYECNICAK 73 (110)
T ss_dssp CCEECSSSCC
T ss_pred CCeeCCCCcc
Confidence 4566666654
No 294
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=28.96 E-value=24 Score=20.88 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=12.5
Q ss_pred CCCCccccCCCCCCC
Q 035653 21 EKLDTQFQCPFCGHG 35 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~ 35 (87)
..+|..|.||.|+.-
T Consensus 9 ~~~p~~~~CpI~~~~ 23 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTL 23 (85)
T ss_dssp TTCCTTTBCTTTCSB
T ss_pred hcCchheECcccCch
Confidence 467899999999863
No 295
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=28.50 E-value=25 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=10.8
Q ss_pred CCCccccCCCCCC
Q 035653 22 KLDTQFQCPFCGH 34 (87)
Q Consensus 22 kl~~~F~CPfC~~ 34 (87)
.-...|+||.|+.
T Consensus 66 ~~s~~~~C~nC~R 78 (99)
T 3mhs_C 66 ESSQYIHCENCGR 78 (99)
T ss_dssp TTSCEEECTTTCC
T ss_pred cCCCeEECCCCCC
Confidence 4567899999997
No 296
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=27.96 E-value=25 Score=21.53 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=12.6
Q ss_pred CCCCCccccCCCCCC
Q 035653 20 MEKLDTQFQCPFCGH 34 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~ 34 (87)
...+|..|.||.|..
T Consensus 16 ~~~~p~~~~CpI~~~ 30 (98)
T 1wgm_A 16 YADACDEFLDPIMST 30 (98)
T ss_dssp CCSCCTTTBCTTTCS
T ss_pred hhcCcHhcCCcCccc
Confidence 456889999999986
No 297
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=27.95 E-value=37 Score=24.59 Aligned_cols=27 Identities=33% Similarity=0.691 Sum_probs=19.3
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcCcccc
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCWNCLE 58 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~ 58 (87)
.||.||.. | ....-.+.+.-.|..|+.
T Consensus 237 pC~~CG~~--I--~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 237 PCPACGRP--V--ERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp BCTTTCCB--C--EEEESSSCEEEECTTTTT
T ss_pred CCCCCCCE--e--eEEEECCCceEECCCCCC
Confidence 59999984 2 222335788889999984
No 298
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.63 E-value=27 Score=24.25 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=17.1
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeEe
Q 035653 27 FQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 27 F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~~ 62 (87)
-.|+.|+..=++ ..-.-+|+.||..|..
T Consensus 162 ~~C~~C~~~F~~--------~~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 162 RVCHRCRVEFTF--------TNRKHHCRNCGQVFCG 189 (220)
T ss_dssp SBCTTTCCBCCS--------SSCCEECTTTCCEECS
T ss_pred CccCCCCCccCC--------cccccccCCcCCEECh
Confidence 589999975332 1123477777776543
No 299
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=26.99 E-value=28 Score=21.44 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=13.2
Q ss_pred CCCCCccccCCCCCCC
Q 035653 20 MEKLDTQFQCPFCGHG 35 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~~ 35 (87)
...+|..|.||.|+.-
T Consensus 23 ~~~~p~~~~CpI~~~~ 38 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTL 38 (100)
T ss_dssp CSSCSTTTBCTTTCSB
T ss_pred hccCcHhhCCcCccCc
Confidence 4568899999999864
No 300
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.98 E-value=23 Score=22.43 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=18.6
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEE-EcCcccce
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEA-FCWNCLER 59 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~-~C~~C~~~ 59 (87)
..|-.|.|+.||+.-.+ + .... .|..||..
T Consensus 69 ~~p~~~~C~~CG~~~e~----~----~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKP----N----ALDYGVCEKCHSK 99 (119)
T ss_dssp EECCEEECSSSSCEECS----C----CSTTCCCSSSSSC
T ss_pred eccceEEcCCCCCEEeC----C----CCCCCcCccccCC
Confidence 44667888888884222 1 1234 68888864
No 301
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=26.81 E-value=21 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=19.3
Q ss_pred CCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccc
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLE 58 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~ 58 (87)
..+..-.||.||.. ...+-.|..||.
T Consensus 26 ~~p~l~~c~~cG~~-----------~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK-----------KLSHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCE-----------ECTTBCCTTTCB
T ss_pred cCCCceECCCCCCE-----------eCCceEcCCCCc
Confidence 56788999999972 124557888884
No 302
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=26.61 E-value=6.8 Score=26.39 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=7.5
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
-|+||+|.+
T Consensus 23 D~~Cp~C~~ 31 (182)
T 3gn3_A 23 EPTCPFSVK 31 (182)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHhHHH
Confidence 589999985
No 303
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=26.54 E-value=24 Score=23.18 Aligned_cols=15 Identities=33% Similarity=0.904 Sum_probs=11.3
Q ss_pred CCCccccCCCCCCCC
Q 035653 22 KLDTQFQCPFCGHGT 36 (87)
Q Consensus 22 kl~~~F~CPfC~~~~ 36 (87)
++-..|.||.||+..
T Consensus 67 PvLR~Y~CpiCGATG 81 (106)
T 3alr_A 67 PYLRQYKCPLCGATG 81 (106)
T ss_dssp TTGGGCCCTTTCCCG
T ss_pred CCcccccCCCCCCcC
Confidence 444679999999853
No 304
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=26.28 E-value=32 Score=23.15 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=14.1
Q ss_pred cEEEEEcCccccee--EeecCCCC
Q 035653 47 QIGEAFCWNCLERF--CTQIHALT 68 (87)
Q Consensus 47 ~~g~~~C~~C~~~~--~~~i~~L~ 68 (87)
..|.|.|+ ||+.. ++....++
T Consensus 64 ~~g~I~C~-Cgq~WG~~m~yk~~~ 86 (133)
T 3ga3_A 64 INGEIICK-CGQAWGTMMVHKGLD 86 (133)
T ss_dssp EEEEEEET-TSCEEEEEEEETTEE
T ss_pred CCceEEEe-cCChhhhhEEecccc
Confidence 36899999 99874 44444433
No 305
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=26.15 E-value=22 Score=26.01 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCeEEEEEeccCcEEEEEcC-ccccee-EeecCCCCchhhhhhhhHHH
Q 035653 34 HGTSVECRIDKKIQIGEAFCW-NCLERF-CTQIHALTEPIDIYAEWIDE 80 (87)
Q Consensus 34 ~~~sV~v~idk~~~~g~~~C~-~C~~~~-~~~i~~L~epiDVYs~wiD~ 80 (87)
..+.+....+ +.|+....|. .||..+ .|++.-...+-+-|.+|+++
T Consensus 209 ~~n~~~~~~~-~~G~y~g~Cse~CG~~H~~M~~~v~vv~~~~f~~W~~~ 256 (262)
T 2gsm_B 209 RLAQLWFRAE-REGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQ 256 (262)
T ss_dssp CCEEEEEECC-SCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHH
T ss_pred ceeEEEEecC-CcEEEEEEChHhcccCcccCeEEEEEEcHHHHHHHHHH
Confidence 3344554443 3467889998 599886 44555555667899999975
No 306
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=25.88 E-value=15 Score=22.72 Aligned_cols=18 Identities=22% Similarity=0.598 Sum_probs=14.5
Q ss_pred CCCCCCccccCCCCCCCC
Q 035653 19 GMEKLDTQFQCPFCGHGT 36 (87)
Q Consensus 19 ~~~kl~~~F~CPfC~~~~ 36 (87)
-...++..|.||.|...-
T Consensus 11 ~~~~~~~~~~C~IC~~~~ 28 (118)
T 3hct_A 11 FDPPLESKYECPICLMAL 28 (118)
T ss_dssp BSSCCCGGGBCTTTCSBC
T ss_pred hccCCCCCCCCCcCChhh
Confidence 456889999999999643
No 307
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.77 E-value=19 Score=23.06 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=14.8
Q ss_pred ceeEeecCCCCchhhhh
Q 035653 58 ERFCTQIHALTEPIDIY 74 (87)
Q Consensus 58 ~~~~~~i~~L~epiDVY 74 (87)
..|+..+.+=..|||||
T Consensus 85 ~~yqi~LkS~~GPIdV~ 101 (106)
T 2aze_B 85 ENFQISLKSKQGPIDVF 101 (106)
T ss_dssp SCEEEEEECSSSCCEEE
T ss_pred cceEEEEECCCCCEEEE
Confidence 36899888989999998
No 308
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.44 E-value=24 Score=17.62 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=8.3
Q ss_pred CccccCC--CCCC
Q 035653 24 DTQFQCP--FCGH 34 (87)
Q Consensus 24 ~~~F~CP--fC~~ 34 (87)
++.|.|+ .|+.
T Consensus 16 ~k~~~C~~~~C~k 28 (47)
T 1ncs_A 16 DKTFECLFPGCTK 28 (47)
T ss_dssp TTEEECCCTTCCC
T ss_pred CCCeECCCCCCCC
Confidence 5679995 5985
No 309
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.22 E-value=25 Score=20.38 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=21.6
Q ss_pred CCCccccCCCCCCCCeEEEEEec--cCcEEEEEcCcccceeEe
Q 035653 22 KLDTQFQCPFCGHGTSVECRIDK--KIQIGEAFCWNCLERFCT 62 (87)
Q Consensus 22 kl~~~F~CPfC~~~~sV~v~idk--~~~~g~~~C~~C~~~~~~ 62 (87)
.-++.|.|+.|+..-.-.-.+.. ..-.....|..|+..|..
T Consensus 12 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~ 54 (107)
T 1wjp_A 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFS 54 (107)
T ss_dssp CCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSS
T ss_pred CCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCC
Confidence 34567999999963110000000 000123579999988754
No 310
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=25.15 E-value=25 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=6.3
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
++.|.|+.|+.
T Consensus 98 ~~~~~C~~C~k 108 (129)
T 2wbt_A 98 EHTKVCPVCKK 108 (129)
T ss_dssp CCCCBCTTTCC
T ss_pred CCCCCCCCCCc
Confidence 34466666664
No 311
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=25.14 E-value=49 Score=22.40 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=15.9
Q ss_pred EEEEEcCcccceeEee--cCCC
Q 035653 48 IGEAFCWNCLERFCTQ--IHAL 67 (87)
Q Consensus 48 ~g~~~C~~C~~~~~~~--i~~L 67 (87)
-|.+.|..||..|-.. |+-+
T Consensus 107 eg~L~C~~cg~~YPI~dGIP~m 128 (141)
T 2j6a_A 107 EGEMKCRNCGHIYYIKNGIPNL 128 (141)
T ss_dssp EEEEECTTTCCEEEEETTEESS
T ss_pred CCEEECCCCCCcccccCCccCc
Confidence 5889999999999775 5543
No 312
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.78 E-value=24 Score=20.95 Aligned_cols=12 Identities=25% Similarity=0.891 Sum_probs=10.0
Q ss_pred CCccccCCCCCC
Q 035653 23 LDTQFQCPFCGH 34 (87)
Q Consensus 23 l~~~F~CPfC~~ 34 (87)
-++.|.|+.|+.
T Consensus 22 ~~kpy~C~~C~k 33 (88)
T 1x6f_A 22 QNSTYQCKHCDS 33 (88)
T ss_dssp CCSCEECSSSCC
T ss_pred CCCCCcCCCCCC
Confidence 367899999986
No 313
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=24.60 E-value=33 Score=25.66 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCCCeEEEEEeccCcEEEEEcC-ccccee-EeecCCCCchhhhhhhhHHHHHHh
Q 035653 33 GHGTSVECRIDKKIQIGEAFCW-NCLERF-CTQIHALTEPIDIYAEWIDECERA 84 (87)
Q Consensus 33 ~~~~sV~v~idk~~~~g~~~C~-~C~~~~-~~~i~~L~epiDVYs~wiD~~e~~ 84 (87)
|..+.+....++ .|+....|. .||..+ .|++.-...+-+-|.+|+.+-.+.
T Consensus 226 G~~n~~~~~~~~-~G~y~g~CsE~CG~~Hs~M~~~v~vvs~~~F~~Wl~~~~~~ 278 (298)
T 3hb3_B 226 GRIAQLWFSVDQ-EGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGAKEE 278 (298)
T ss_dssp TCCEEEEEECSS-SEEEEECCCSCCSTTTTSCCEEEEEECHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCC-CEEEEEEcccccCcCccCCeeEEEEEcHHHHHHHHHHhHhh
Confidence 444555555543 578889998 599886 445555556678899999876554
No 314
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.89 E-value=25 Score=19.95 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCCCccccCCCCCCCCeEEEEEecc-----CcEEEEEcCcccceeE
Q 035653 21 EKLDTQFQCPFCGHGTSVECRIDKK-----IQIGEAFCWNCLERFC 61 (87)
Q Consensus 21 ~kl~~~F~CPfC~~~~sV~v~idk~-----~~~g~~~C~~C~~~~~ 61 (87)
.-..+.+.|++|+. ++. ..+.. -+...+.|..|+..|.
T Consensus 12 ~c~~r~~~C~~C~~--~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 12 ECPLRLAVCQHCDL--ELS-ILKLKEHEDYCGARTELCGNCGRNVL 54 (75)
T ss_dssp CCCCCCEECSSSCC--EEC-HHHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred cCCCcccCCcccCh--Hhh-HHHHHHHHhHcCCCceEcccCCCcCc
Confidence 34567899999986 342 11111 1345689999999754
No 315
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=23.87 E-value=16 Score=23.22 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=19.4
Q ss_pred CccccCCCCCCCCeEEEEEecc------CcEEEEEcCcccceeEe
Q 035653 24 DTQFQCPFCGHGTSVECRIDKK------IQIGEAFCWNCLERFCT 62 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~------~~~g~~~C~~C~~~~~~ 62 (87)
++.|.|+.||.. ..-.-... .+.-.-.|..||..|..
T Consensus 20 ek~y~C~~C~k~--F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 62 (133)
T 2lt7_A 20 RVYYICIVCKRS--YVCLTSLRRHFNIHSWEKKYPCRYCEKVFPL 62 (133)
T ss_dssp EEEEEETTTCCE--ESCHHHHHHHHHHHHCCSCEECSSSSCEESS
T ss_pred CcCeECCCCCCC--cCCHHHHHHHHHHcCCCCCeeCCccCeeccc
Confidence 467888888852 11100000 11223578888877754
No 316
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=23.75 E-value=57 Score=24.87 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=34.1
Q ss_pred CCCCCccccCCCCCCCCeEEEEEeccCcEEEEEcCcccceeE----eecCCCCchhhhhhhhHHHHHH
Q 035653 20 MEKLDTQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERFC----TQIHALTEPIDIYAEWIDECER 83 (87)
Q Consensus 20 ~~kl~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~~----~~i~~L~epiDVYs~wiD~~e~ 83 (87)
..++--++.|+-|++-. + .... ....-.|..||..+. +.+.+|.++ +|++.+.+
T Consensus 238 ~~~~g~v~~C~~C~~~~-~--~~~~--~~~~~~C~~cg~~~~~~GPlW~g~l~d~-----~fv~~~l~ 295 (392)
T 3axs_A 238 IEQFGYIQYCFNCMNRE-V--VTDL--YKFKEKCPHCGSKFHIGGPLWIGKLWDE-----EFTNFLYE 295 (392)
T ss_dssp HTTEEEEEECTTTCCEE-E--ECCG--GGCCSBCTTTCSBCEEEEEEECSCSCCH-----HHHHHHHH
T ss_pred HHhcceEEECCCCCCeE-e--ecCC--CCCCCcCCCCCCccceecccccCcCCCH-----HHHHHHHH
Confidence 35677899999999732 2 1111 112357999998875 458888776 45555433
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.66 E-value=37 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.5
Q ss_pred EEEEEcCcccceeEeecCCC
Q 035653 48 IGEAFCWNCLERFCTQIHAL 67 (87)
Q Consensus 48 ~g~~~C~~C~~~~~~~i~~L 67 (87)
-.++.|..||..++.....+
T Consensus 91 H~HliC~~Cg~v~~~~~~~~ 110 (145)
T 2fe3_A 91 HYHAICENCGKIVDFHYPGL 110 (145)
T ss_dssp EEEEEETTTCCEEECCCCCC
T ss_pred cceEEECCCCCEEEecCCCH
Confidence 36899999999888765444
No 318
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.60 E-value=26 Score=20.74 Aligned_cols=10 Identities=40% Similarity=1.162 Sum_probs=6.1
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
+.|.|+.|+.
T Consensus 61 k~~~C~~Cgk 70 (96)
T 2ctd_A 61 EMFTCHHCGK 70 (96)
T ss_dssp CCCCCSSSCC
T ss_pred CCeECCCCCC
Confidence 4566666664
No 319
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=23.55 E-value=66 Score=20.37 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=16.2
Q ss_pred EEEEEeccCcEEEEEcCcccceeEeec
Q 035653 38 VECRIDKKIQIGEAFCWNCLERFCTQI 64 (87)
Q Consensus 38 V~v~idk~~~~g~~~C~~C~~~~~~~i 64 (87)
+...+.+ +. .-.|..||..|...-
T Consensus 70 ~W~~l~~--g~-~~RC~eCG~~fkL~~ 93 (98)
T 1v54_F 70 IWFWLHK--GE-AQRCPSCGTHYKLVP 93 (98)
T ss_dssp EEEEEES--SS-CEECTTTCCEEEEEC
T ss_pred EEEEEeC--CC-ceECCCCCeEEEEee
Confidence 4444543 33 569999999998763
No 320
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.44 E-value=46 Score=20.58 Aligned_cols=31 Identities=23% Similarity=0.746 Sum_probs=20.7
Q ss_pred CCCccccCCC--CCCCCeEEEEEeccCcEEEEEcCcccceeEee
Q 035653 22 KLDTQFQCPF--CGHGTSVECRIDKKIQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 22 kl~~~F~CPf--C~~~~sV~v~idk~~~~g~~~C~~C~~~~~~~ 63 (87)
...+.+.|.+ |+.. + .+ -..|..|+..|-..
T Consensus 21 ~~~~~~~C~~~~Ck~~-------~---~l-~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDV-------E---LV-AVICPYCEKNFCLR 53 (86)
T ss_dssp SCSCCEECCSTTCCCE-------E---SS-CEECTTTCCEECGG
T ss_pred cCCCCCCCCCcCCCCC-------C---cc-ceECCCCCcccccc
Confidence 3455688999 9862 1 11 23899999988653
No 321
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=23.28 E-value=20 Score=25.69 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=29.5
Q ss_pred CCCeEEEEEeccCcEEEEEcC-cccceeE-eecCCCCchhhhhhhhHHH
Q 035653 34 HGTSVECRIDKKIQIGEAFCW-NCLERFC-TQIHALTEPIDIYAEWIDE 80 (87)
Q Consensus 34 ~~~sV~v~idk~~~~g~~~C~-~C~~~~~-~~i~~L~epiDVYs~wiD~ 80 (87)
..+.+....+ +.|+....|. .||..++ |++.-...+-+-|.+|+++
T Consensus 178 r~n~~~~~~~-~~G~y~g~Cse~CG~~Hs~M~~~v~vv~~~~f~~W~~~ 225 (227)
T 1v54_B 178 RLNQTTLMSS-RPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSAS 225 (227)
T ss_dssp CCEEEEECCS-SCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHH
T ss_pred ceEEEEEecC-CcEEEEEEehhhcccccccCeEEEEEEcHHHHHHHHHh
Confidence 3344444433 3467788997 4998863 4544444566789999975
No 322
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.23 E-value=46 Score=18.09 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=25.2
Q ss_pred cCCCCCCCCeEEEEEeccCcEEEEEcC-cccceeEeecCCCCchh
Q 035653 28 QCPFCGHGTSVECRIDKKIQIGEAFCW-NCLERFCTQIHALTEPI 71 (87)
Q Consensus 28 ~CPfC~~~~sV~v~idk~~~~g~~~C~-~C~~~~~~~i~~L~epi 71 (87)
+|+.|+.+. ..+.--|.|- .|..-|...--.|+++.
T Consensus 4 ~cc~C~~p~--------~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~ 40 (52)
T 2kgg_A 4 AAQNCQRPC--------KDKVDWVQCDGGCDEWFHQVCVGVSPEM 40 (52)
T ss_dssp SCTTCCCCC--------CTTCCEEECTTTTCCEEETTTTTCCHHH
T ss_pred cCCCCcCcc--------CCCCcEEEeCCCCCccCcccccCCCccc
Confidence 577887642 2334567899 89999999866666553
No 323
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.19 E-value=26 Score=21.53 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=22.4
Q ss_pred CccccCCCCCCCCeEEEEEec-----c---CcEEEEEcCcccceeEee
Q 035653 24 DTQFQCPFCGHGTSVECRIDK-----K---IQIGEAFCWNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk-----~---~~~g~~~C~~C~~~~~~~ 63 (87)
++.|.|+.|+..-+-.-.+.. - .+.-.-.|..||..|...
T Consensus 16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~ 63 (102)
T 2ghf_A 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63 (102)
T ss_dssp CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESST
T ss_pred CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCH
Confidence 467999999963110000100 0 111236899999998653
No 324
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.10 E-value=24 Score=20.53 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=26.6
Q ss_pred CccccCCCCCCCCeEEEEEeccCcEEEEEcC-cccceeEeecCCCCc
Q 035653 24 DTQFQCPFCGHGTSVECRIDKKIQIGEAFCW-NCLERFCTQIHALTE 69 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk~~~~g~~~C~-~C~~~~~~~i~~L~e 69 (87)
+..+.|+.|+.+. ......|.|- .|..-|-..--.|++
T Consensus 6 ~~~~~C~~C~~p~--------~~~~~mI~CD~~C~~WfH~~Cvglt~ 44 (65)
T 2vpb_A 6 DPVYPCGICTNEV--------NDDQDAILCEASCQKWFHRICTGMTE 44 (65)
T ss_dssp ---CBCTTTCSBC--------CTTSCEEEBTTTTCCEEEHHHHTCCH
T ss_pred CCcCcCccCCCcc--------CCCCCeEecccCccccCchhccCCCH
Confidence 3567899999852 2345678999 999999888556654
No 325
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.00 E-value=27 Score=18.77 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=6.4
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
..|.||.||.
T Consensus 8 ~~~~C~~C~~ 17 (39)
T 2i5o_A 8 DQVPCEKCGS 17 (39)
T ss_dssp CEEECTTTCC
T ss_pred CCcccccccC
Confidence 3566777764
No 326
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=22.82 E-value=27 Score=29.00 Aligned_cols=15 Identities=20% Similarity=0.842 Sum_probs=12.3
Q ss_pred ccccCCCCCCCCeEE
Q 035653 25 TQFQCPFCGHGTSVE 39 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~ 39 (87)
+.|.||||++.+.|-
T Consensus 76 ~~W~C~~C~~~N~~P 90 (768)
T 1m2o_A 76 SSWSCPICNSRNHLP 90 (768)
T ss_dssp TEECCTTTCCCCBCC
T ss_pred CEEEcccCCCCCCCC
Confidence 589999999987644
No 327
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=22.80 E-value=31 Score=18.45 Aligned_cols=9 Identities=33% Similarity=1.232 Sum_probs=4.5
Q ss_pred ccccCCC--CC
Q 035653 25 TQFQCPF--CG 33 (87)
Q Consensus 25 ~~F~CPf--C~ 33 (87)
+.|.|++ |+
T Consensus 46 ~~~~C~~~~C~ 56 (72)
T 2epa_A 46 KPFSCSWKGCE 56 (72)
T ss_dssp CSEECCCTTCC
T ss_pred CCccCCCCCCC
Confidence 3455544 55
No 328
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=22.73 E-value=39 Score=25.46 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCCCeEEEEEeccCcEEEEEcC-cccceeE-eecCCCCc-hhhhhhhhHHHHHHh
Q 035653 33 GHGTSVECRIDKKIQIGEAFCW-NCLERFC-TQIHALTE-PIDIYAEWIDECERA 84 (87)
Q Consensus 33 ~~~~sV~v~idk~~~~g~~~C~-~C~~~~~-~~i~~L~e-piDVYs~wiD~~e~~ 84 (87)
|..+.+....++ .|+....|. .||..++ |++.-... +-+-|.+|+++..+.
T Consensus 188 Gr~n~~~~~~~~-~G~y~g~CsE~CG~~Hs~M~~~v~vv~~~~~F~~Wl~~~~~~ 241 (315)
T 1fft_B 188 GMQTRLHLIANE-PGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQS 241 (315)
T ss_dssp TSCEEEEEECCS-CBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHHHHHHHC
T ss_pred CcceeeEEecCC-CeEEEEeccccchhhHHhccceEEEecCHHHHHHHHHHHHhc
Confidence 344455555443 467788997 5998863 45444444 558899999876553
No 329
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=22.25 E-value=9.4 Score=26.23 Aligned_cols=10 Identities=40% Similarity=1.404 Sum_probs=7.8
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
.-|+||+|..
T Consensus 23 ~D~~Cp~C~~ 32 (205)
T 3gmf_A 23 VSYTCPHCSH 32 (205)
T ss_dssp ECTTCHHHHH
T ss_pred ECCCCHHHHH
Confidence 4588999974
No 330
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.12 E-value=28 Score=24.73 Aligned_cols=11 Identities=36% Similarity=1.301 Sum_probs=9.5
Q ss_pred CccccCCCCCC
Q 035653 24 DTQFQCPFCGH 34 (87)
Q Consensus 24 ~~~F~CPfC~~ 34 (87)
+.+..||+||.
T Consensus 220 ~~Iv~Cp~CgR 230 (256)
T 3na7_A 220 GDMITCPYCGR 230 (256)
T ss_dssp SSCEECTTTCC
T ss_pred CCEEECCCCCe
Confidence 56899999997
No 331
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=21.99 E-value=30 Score=20.05 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=22.2
Q ss_pred CccccCCCCCCCCeEEEEEec------cCcEEEEEc--CcccceeEee
Q 035653 24 DTQFQCPFCGHGTSVECRIDK------KIQIGEAFC--WNCLERFCTQ 63 (87)
Q Consensus 24 ~~~F~CPfC~~~~sV~v~idk------~~~~g~~~C--~~C~~~~~~~ 63 (87)
++.|.|+.|+.. ..-.-.. -.+.....| ..||..|...
T Consensus 64 ~~~~~C~~C~~~--f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~ 109 (119)
T 2jp9_A 64 VKPFQCKTCQRK--FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARS 109 (119)
T ss_dssp CCCEECTTTCCE--ESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSH
T ss_pred CCCccCCccCch--hCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCH
Confidence 457999999962 1110000 112334789 7999988653
No 332
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=21.85 E-value=36 Score=24.51 Aligned_cols=28 Identities=29% Similarity=0.664 Sum_probs=16.6
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEcCccccee
Q 035653 27 FQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF 60 (87)
Q Consensus 27 F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~ 60 (87)
-=||.||+.. .. ..+--...|..||..+
T Consensus 108 ~fC~~CG~~~-~~-----~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 108 KYCGYCGHEM-YP-----SKTEWAMLCSHCRERY 135 (269)
T ss_dssp SBCTTTCCBE-EE-----CSSSSCEEESSSSCEE
T ss_pred CccccCCCcC-cc-----CCCceeeeCCCCCCEe
Confidence 3589999752 21 1222345788888754
No 333
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.76 E-value=31 Score=17.50 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=6.7
Q ss_pred cccCCCCCC
Q 035653 26 QFQCPFCGH 34 (87)
Q Consensus 26 ~F~CPfC~~ 34 (87)
.-+||.|+.
T Consensus 6 ~vqcpvcqq 14 (29)
T 3vhs_A 6 QVQCPVCQQ 14 (29)
T ss_dssp EEECTTTCC
T ss_pred eeeChHHHH
Confidence 457888875
No 334
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=21.64 E-value=9.8 Score=25.79 Aligned_cols=10 Identities=30% Similarity=1.036 Sum_probs=7.9
Q ss_pred ccccCCCCCC
Q 035653 25 TQFQCPFCGH 34 (87)
Q Consensus 25 ~~F~CPfC~~ 34 (87)
.-|.||+|.+
T Consensus 37 ~D~~CP~C~~ 46 (202)
T 3gha_A 37 GDYKCPSCKV 46 (202)
T ss_dssp ECTTCHHHHH
T ss_pred ECCCChhHHH
Confidence 4578999985
No 335
>2lkl_A Erythrocyte membrane protein 1 (pfemp1); helical protein, cell adhesion; NMR {Plasmodium falciparum}
Probab=21.48 E-value=43 Score=20.85 Aligned_cols=17 Identities=18% Similarity=0.679 Sum_probs=13.7
Q ss_pred cCCCCchhhhhhhhHHH
Q 035653 64 IHALTEPIDIYAEWIDE 80 (87)
Q Consensus 64 i~~L~epiDVYs~wiD~ 80 (87)
-.|+..-+|.|++|+|.
T Consensus 40 ~DPI~NQLnLfHkWLDR 56 (81)
T 2lkl_A 40 SDPIMNQLDLLHKWLDR 56 (81)
T ss_dssp SCSSCTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH
Confidence 34677778999999985
No 336
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.81 E-value=32 Score=22.64 Aligned_cols=8 Identities=50% Similarity=1.244 Sum_probs=7.0
Q ss_pred cCCCCCCC
Q 035653 28 QCPFCGHG 35 (87)
Q Consensus 28 ~CPfC~~~ 35 (87)
.||.||++
T Consensus 150 ~Cp~CG~~ 157 (165)
T 2lcq_A 150 VCPDCGSK 157 (165)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCc
Confidence 69999985
No 337
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=20.50 E-value=39 Score=20.99 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=9.8
Q ss_pred EEEcCcccceeEee
Q 035653 50 EAFCWNCLERFCTQ 63 (87)
Q Consensus 50 ~~~C~~C~~~~~~~ 63 (87)
.-+|+ ||.+|..+
T Consensus 98 ~~~Cg-CG~SF~~~ 110 (112)
T 1x0g_A 98 SQTCG-CGMAFRVS 110 (112)
T ss_dssp SEECS-SSSEEECC
T ss_pred CcCCC-CCCccccC
Confidence 45788 99999753
No 338
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.44 E-value=43 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.909 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHhh
Q 035653 72 DIYAEWIDECERAN 85 (87)
Q Consensus 72 DVYs~wiD~~e~~n 85 (87)
+-|.+|+.+|..|.
T Consensus 98 eqy~~WMaA~rlAs 111 (137)
T 2ys3_A 98 QQYARWMAGCRLAS 111 (137)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 67999999999886
No 339
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=20.39 E-value=26 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=8.6
Q ss_pred EEEEEcCcccceeE
Q 035653 48 IGEAFCWNCLERFC 61 (87)
Q Consensus 48 ~g~~~C~~C~~~~~ 61 (87)
...+.|..||+.+-
T Consensus 161 ~~~~~C~~CGE~~~ 174 (191)
T 3d00_A 161 GKIVLCPQCREAYP 174 (191)
T ss_dssp CCEEECTTTCCEEE
T ss_pred cCCEECCcCCCChh
Confidence 45666666666554
No 340
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=20.29 E-value=25 Score=29.26 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=11.2
Q ss_pred ccccCCCCCCCCeE
Q 035653 25 TQFQCPFCGHGTSV 38 (87)
Q Consensus 25 ~~F~CPfC~~~~sV 38 (87)
+.|.||||++.+.|
T Consensus 85 ~~W~C~~C~~~N~~ 98 (769)
T 2nut_A 85 KLWACNFCYQRNQF 98 (769)
T ss_dssp TEEECSSSCCEEEC
T ss_pred CEEEccCCCCCCCC
Confidence 47999999987654
No 341
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=20.09 E-value=33 Score=22.10 Aligned_cols=12 Identities=25% Similarity=0.550 Sum_probs=8.9
Q ss_pred ccccCCCCCCCC
Q 035653 25 TQFQCPFCGHGT 36 (87)
Q Consensus 25 ~~F~CPfC~~~~ 36 (87)
.-|.||+|-...
T Consensus 30 ~d~~Cp~C~~~~ 41 (195)
T 2znm_A 30 FGYFCVHCHHFD 41 (195)
T ss_dssp ECTTSCCTTSSC
T ss_pred ECCCChhHHHHh
Confidence 357899998754
No 342
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.09 E-value=22 Score=23.12 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=23.5
Q ss_pred ccccCCCCCCCCeEEEEEeccCcEEEEEcCccccee-------EeecCCCCchhhhh
Q 035653 25 TQFQCPFCGHGTSVECRIDKKIQIGEAFCWNCLERF-------CTQIHALTEPIDIY 74 (87)
Q Consensus 25 ~~F~CPfC~~~~sV~v~idk~~~~g~~~C~~C~~~~-------~~~i~~L~epiDVY 74 (87)
..-.|..|+..=++. .-.-+|+.||..| ...++....|+=|-
T Consensus 68 ~~~~C~~C~~~Fs~~--------~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC 116 (125)
T 1joc_A 68 EVQNCMACGKGFSVT--------VRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVC 116 (125)
T ss_dssp GCCBCTTTCCBCCSS--------SCCEECTTTCCEECGGGSCEEECCTTCSSCEEEC
T ss_pred CCCCCcCcCCccccc--------cccccCCCCCeEEChHHhCCccccCCCCCCCEeC
Confidence 456899999854321 1223566666544 34456566666543
Done!