BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035658
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 76/145 (52%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS 168
L L LQ N G IPP + N S+L L LS N SG IP +G LS L+ L L+ N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 169 GSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSN 228
G IP L + L TL + N L+G IPS IP+ +G L N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 229 LAILYIYNNSLSGLIPSEIGNLKSL 253
LAIL + NNS SG IP+E+G+ +SL
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSL 540
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISK--LKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ 166
L LDL N G I P + K L+ L L +N F+G IPP + + S L +LHL N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 167 LSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNL 226
LSG+IP SLG+L+ L L ++ N L G IP E IP L N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 227 SNLAILYIYNNSLSGLIPSEIGNLKSLS 254
+NL + + NN L+G IP IG L++L+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLA 517
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161
+F + + +LD+ N L G IP +IG++ L L L N SG+IP ++G L L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPS 197
L N+L G IP ++ LT L + + NN+LSG IP
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 96 GTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP-PQIGHL 154
G + DF + L LDL N +G +PP G+ S L+ L LSSN FSG +P + +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 155 SYLKTLHLFENQLSGSIPHSLGNLT---------------------------NLVTLYIY 187
LK L L N+ SG +P SL NL+ L LY+
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 188 NNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSNLAILYIYNNSLSGLIPSEI 247
NN +G IP IP SLG+LS L L ++ N L G IP E+
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 248 GNLKSLSNL 256
+K+L L
Sbjct: 463 MYVKTLETL 471
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS 168
L L L N L G IP + N + L ++ LS+N +G IP IG L L L L N S
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 169 GSIPHSLGNLTNLVTLYIYNNSLSGSIPS 197
G+IP LG+ +L+ L + N +G+IP+
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS 168
L +LD+ N+L G+ I ++LK L +SSN F G IPP L L+ L L EN+ +
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282
Query: 169 GSIPHSL-GNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIP-QSLGNL 226
G IP L G L L + N G++P +P +L +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 227 SNLAILYIYNNSLSGLIPSEIGNLKS 252
L +L + N SG +P + NL +
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSA 368
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
Q+ +S ++S ++ G P + + L + N LSG IP +G++ L L
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 186 IYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSNLAILYIYNNSLSGLIPS 245
+ +N +SGSIP E IPQ++ L+ L + + NN+LSG IP
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP- 721
Query: 246 EIGNLKSL 253
E+G ++
Sbjct: 722 EMGQFETF 729
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162
S+ +L ++ L N+L G IP IG + L L LS+N FSG IP ++G L L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 163 FENQLSGSIPHSL 175
N +G+IP ++
Sbjct: 546 NTNLFNGTIPAAM 558
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 69/195 (35%), Gaps = 46/195 (23%)
Query: 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPP------------------ 149
+LA L L N GNIP ++G+ L +L L++NLF+G IP
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 150 ----------------------------QIGHLSYLKTLHLFENQLSGSIPHSLGNLTNL 181
Q+ LS ++ G + N ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 182 VTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSNLAILYIYNNSLSG 241
+ L + N LSG IP E IP +G+L L IL + +N L G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 242 LIPSEIGNLKSLSNL 256
IP + L L+ +
Sbjct: 695 RIPQAMSALTMLTEI 709
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL 167
L +L + N++ G++ + L++L +SSN FS I P +G S L+ L + N+L
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKL 235
Query: 168 SGSIPHSLGNLTNLVTLYIYNNSLSGSIP 196
SG ++ T L L I +N G IP
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 51/197 (25%)
Query: 36 EETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCNYGERVNSMNLTS---- 91
E L+ +K L + N L W+ N C + G+ C ++V S++L+S
Sbjct: 12 REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCR-DDKVTSIDLSSKPLN 63
Query: 92 IG-----------------------LKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP--Q 126
+G + G++ F S+ L LDL RN L G +
Sbjct: 64 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTS 121
Query: 127 IGNISKLKYLGLSSNL--FSGAIPPQIGHLSYLKTLHLFENQLSGS------IPHSLGNL 178
+G+ S LK+L +SSN F G + + L+ L+ L L N +SG+ + G L
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 179 TNLVTLYIYNNSLSGSI 195
+L I N +SG +
Sbjct: 181 KHLA---ISGNKISGDV 194
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 76/145 (52%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS 168
L L LQ N G IPP + N S+L L LS N SG IP +G LS L+ L L+ N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 169 GSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSN 228
G IP L + L TL + N L+G IPS IP+ +G L N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 229 LAILYIYNNSLSGLIPSEIGNLKSL 253
LAIL + NNS SG IP+E+G+ +SL
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSL 537
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISK--LKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ 166
L LDL N G I P + K L+ L L +N F+G IPP + + S L +LHL N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 167 LSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNL 226
LSG+IP SLG+L+ L L ++ N L G IP E IP L N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 227 SNLAILYIYNNSLSGLIPSEIGNLKSLS 254
+NL + + NN L+G IP IG L++L+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLA 514
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161
+F + + +LD+ N L G IP +IG++ L L L N SG+IP ++G L L L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPS 197
L N+L G IP ++ LT L + + NN+LSG IP
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 96 GTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP-PQIGHL 154
G + DF + L LDL N +G +PP G+ S L+ L LSSN FSG +P + +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 155 SYLKTLHLFENQLSGSIPHSLGNLT---------------------------NLVTLYIY 187
LK L L N+ SG +P SL NL+ L LY+
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 188 NNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSNLAILYIYNNSLSGLIPSEI 247
NN +G IP IP SLG+LS L L ++ N L G IP E+
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 248 GNLKSLSNL 256
+K+L L
Sbjct: 460 MYVKTLETL 468
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS 168
L L L N L G IP + N + L ++ LS+N +G IP IG L L L L N S
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 169 GSIPHSLGNLTNLVTLYIYNNSLSGSIPS 197
G+IP LG+ +L+ L + N +G+IP+
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
Query: 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS 168
L +LD+ N+L G+ I ++LK L +SSN F G IPP L L+ L L EN+ +
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 279
Query: 169 GSIPHSL-GNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIP-QSLGNL 226
G IP L G L L + N G++P +P +L +
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 227 SNLAILYIYNNSLSGLIPSEIGNLKS 252
L +L + N SG +P + NL +
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSA 365
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
Q+ +S ++S ++ G P + + L + N LSG IP +G++ L L
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 186 IYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSNLAILYIYNNSLSGLIPS 245
+ +N +SGSIP E IPQ++ L+ L + + NN+LSG IP
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP- 718
Query: 246 EIGNLKSL 253
E+G ++
Sbjct: 719 EMGQFETF 726
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162
S+ +L ++ L N+L G IP IG + L L LS+N FSG IP ++G L L L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 163 FENQLSGSIPHSL 175
N +G+IP ++
Sbjct: 543 NTNLFNGTIPAAM 555
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 69/195 (35%), Gaps = 46/195 (23%)
Query: 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPP------------------ 149
+LA L L N GNIP ++G+ L +L L++NLF+G IP
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 150 ----------------------------QIGHLSYLKTLHLFENQLSGSIPHSLGNLTNL 181
Q+ LS ++ G + N ++
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 182 VTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSNLAILYIYNNSLSG 241
+ L + N LSG IP E IP +G+L L IL + +N L G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 242 LIPSEIGNLKSLSNL 256
IP + L L+ +
Sbjct: 692 RIPQAMSALTMLTEI 706
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL 167
L +L + N++ G++ + L++L +SSN FS I P +G S L+ L + N+L
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKL 232
Query: 168 SGSIPHSLGNLTNLVTLYIYNNSLSGSIP 196
SG ++ T L L I +N G IP
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 51/197 (25%)
Query: 36 EETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCNYGERVNSMNLTS---- 91
E L+ +K L + N L W+ N C + G+ C ++V S++L+S
Sbjct: 9 REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTCR-DDKVTSIDLSSKPLN 60
Query: 92 IG-----------------------LKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP--Q 126
+G + G++ F S+ L LDL RN L G +
Sbjct: 61 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTS 118
Query: 127 IGNISKLKYLGLSSNL--FSGAIPPQIGHLSYLKTLHLFENQLSGS------IPHSLGNL 178
+G+ S LK+L +SSN F G + + L+ L+ L L N +SG+ + G L
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGEL 177
Query: 179 TNLVTLYIYNNSLSGSI 195
+L I N +SG +
Sbjct: 178 KHLA---ISGNKISGDV 191
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 12/212 (5%)
Query: 36 EETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCNYGE---RVNSMNLTSI 92
++ +ALL+ K L N + LSSW T + W+G+ C+ RVN+++L+ +
Sbjct: 6 QDKQALLQIKKDL---GNPTTLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 93 GL-KGTLHDFSFSSFPHLAYLDLQR-NQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQ 150
L K S ++ P+L +L + N L G IPP I +++L YL ++ SGAIP
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 151 IGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIP-SEXXXXXXXXXXX 209
+ + L TL N LSG++P S+ +L NLV + N +SG+IP S
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 210 XXXXXXXXXIPQSLGNLSNLAILYIYNNSLSG 241
IP + NL NLA + + N L G
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 27/190 (14%)
Query: 89 LTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP 148
+T + G + DF S L LD N L G +PP I ++ L + N SGAIP
Sbjct: 108 ITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 149 PQIGHLSYLKT-LHLFENQLSGSIPHSLGNL-----------------------TNLVTL 184
G S L T + + N+L+G IP + NL N +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 185 YIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLSNLAILYIYNNSLSGLIP 244
++ NSL+ + + +PQ L L L L + N+L G IP
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 245 SEIGNLKSLS 254
+ GNL+
Sbjct: 286 -QGGNLQRFD 294
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 219 IPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256
IP ++ L+ L LYI + ++SG IP + +K+L L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 100 DFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKT 159
D F PHL L+L+RNQL G P S ++ L L N L LKT
Sbjct: 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106
Query: 160 LHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189
L+L++NQ+S +P S +L +L +L + +N
Sbjct: 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161
F +LA L L RNQL ++PP++ +++KL YL L N L+ LK L
Sbjct: 105 FDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLS 192
L+ NQL + LT L TL + NN L
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161
F S L YL L N+L ++P + ++ LK L L +N L+ LKTL
Sbjct: 129 FDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 162 LFENQLSGSIPHSLGNLTNLVTLYIYNN 189
L NQL + +L L L + N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 8/188 (4%)
Query: 71 CAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNI 130
C G C+ NS++ +S L + + LDLQ N+L +
Sbjct: 5 CKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADT----KKLDLQSNKLSSLPSKAFHRL 60
Query: 131 SKLKYLGLSSNLFSGAIPPQI-GHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189
+KL+ L L+ N +P I L L+TL + +N+L L NL L + N
Sbjct: 61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 190 SLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSL-GNLSNLAILYIYNNSLSGLIPSEIG 248
L S+P +P+ + L++L L +YNN L +
Sbjct: 120 QLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 249 NLKSLSNL 256
L L L
Sbjct: 179 KLTELKTL 186
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNL 142
R+++++L GL+ L F L YL LQ N L ++ L +L L N
Sbjct: 105 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 163
Query: 143 FSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSE 198
S L L L L +N+++ PH+ +L L+TLY++ N+LS ++P+E
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 218
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 102 SFSSFPHLAYLDLQRN-QLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160
+F+ L LDL N QL P + +L L L P L+ L+ L
Sbjct: 74 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 161 HLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXI- 219
+L +N L + +L NL L+++ N +S S+P +
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 220 PQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256
P + +L L LY++ N+LS L + L++L L
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 229
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNL 142
R+++++L GL+ L F L YL LQ N L ++ L +L L N
Sbjct: 106 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164
Query: 143 FSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSE 198
S L L L L +N+++ PH+ +L L+TLY++ N+LS ++P+E
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)
Query: 102 SFSSFPHLAYLDLQRN-QLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160
+F+ L LDL N QL P + +L L L P L+ L+ L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 161 HLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXI- 219
+L +N L + +L NL L+++ N +S S+P +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 220 PQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256
P + +L L LY++ N+LS L + L++L L
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 67 KIGSCAWVGIHCNYGE-RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP 125
+I +GI N E +N L IG + +S +L LDL NQ+ N+ P
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQI-SNLAP 255
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
G ++KL L L +N S P + L+ L L L ENQL P + NL NL L
Sbjct: 256 LSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 186 IYNNSLSGSIP 196
+Y N++S P
Sbjct: 311 LYFNNISDISP 321
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 67 KIGSCAWVGIHCNYGE-RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP 125
+I +GI N E +N L IG + +S +L LDL NQ+ N+ P
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQI-SNLAP 256
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
G ++KL L L +N S P + L+ L L L ENQL P + NL NL L
Sbjct: 257 LSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 311
Query: 186 IYNNSLSGSIP 196
+Y N++S P
Sbjct: 312 LYFNNISDISP 322
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 67 KIGSCAWVGIHCNYGE-RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP 125
+I +GI N E +N L IG + +S +L LDL NQ+ N+ P
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQI-SNLAP 256
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
G ++KL L L +N S P + L+ L L L ENQL P + NL NL L
Sbjct: 257 LSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 311
Query: 186 IYNNSLSGSIP 196
+Y N++S P
Sbjct: 312 LYFNNISDISP 322
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 97 TLHDFS-FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLS 155
T+ D S S L L+ NQ+ P + N++ L+ L +SSN S + L+
Sbjct: 140 TISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLT 195
Query: 156 YLKTLHLFENQLSGSIP--------------------HSLGNLTNLVTLYIYNNSLSGSI 195
L++L NQ+S P +L +LTNL L + NN +S
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 196 P 196
P
Sbjct: 256 P 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 67 KIGSCAWVGIHCNYGE-RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP 125
+I +GI N E +N L IG + +S +L LDL NQ+ N+ P
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQI-SNLAP 256
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
G ++KL L L +N S P + L+ L L L ENQL P + NL NL L
Sbjct: 257 LSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 311
Query: 186 IYNNSLSGSIP 196
+Y N++S P
Sbjct: 312 LYFNNISDISP 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 67 KIGSCAWVGIHCNYGE-RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP 125
+I +GI N E +N L IG + +S +L LDL NQ+ N+ P
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQI-SNLAP 255
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
G ++KL L L +N S P + L+ L L L ENQL P + NL NL L
Sbjct: 256 LSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 186 IYNNSLSGSIP 196
+Y N++S P
Sbjct: 311 LYFNNISDISP 321
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 67 KIGSCAWVGIHCNYGE-RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP 125
+I +GI N E +N L IG + +S +L LDL NQ+ N+ P
Sbjct: 210 QISDITPLGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQI-SNLAP 260
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
G ++KL L L +N S P + L+ L L L ENQL P + NL NL L
Sbjct: 261 LSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315
Query: 186 IYNNSLSGSIP 196
+Y N++S P
Sbjct: 316 LYFNNISDISP 326
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 67 KIGSCAWVGIHCNYGE-RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP 125
+I +GI N E +N L IG + +S +L LDL NQ+ N+ P
Sbjct: 209 QISDITPLGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQI-SNLAP 259
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185
G ++KL L L +N S P + L+ L L L ENQL P + NL NL L
Sbjct: 260 LSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 314
Query: 186 IYNNSLSGSIP 196
+Y N++S P
Sbjct: 315 LYFNNISDISP 325
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%)
Query: 97 TLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSY 156
TL+ F+SFPHL L+L N + P N+ L+ LGL SN LS
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
Query: 157 LKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSL 191
L L + EN++ + + +L NL +L + +N L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 78 CNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLG 137
C YG + S+++T L + + +L +L+L N + + + +L+ +
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 138 LSSNLFSGAIPPQIGHLSYLKTLHLFENQLS---GSIPHSLGNLTNLV 182
L + P L+YL+ L++ NQL+ S+ HS+GNL L+
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 97 TLHDFSFSSFPHLAYLDLQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQIGHLS 155
+L D F +L YL+L NQL ++P + ++ L L LS N L+
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 156 YLKTLHLFENQLSGSIPHSL-GNLTNLVTLYIYNNSLSGSIP 196
LK L L++NQL S+P + LT+L +++++N + P
Sbjct: 182 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 6/151 (3%)
Query: 106 FPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFEN 165
P++ YL L N+L + ++ L YL L+ N L+ LK L L EN
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 166 QLSGSIPHSL-GNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSL- 223
QL S+P + LTNL L + +N L S+P +P+ +
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 224 GNLSNLAILYIYNNSLSGLIPSEIGNLKSLS 254
L+ L L +Y N L + L SL
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161
F +L L L NQL ++P + ++ L YL L+ N L+ L L
Sbjct: 105 FDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 162 LFENQLSGSIPHSL-GNLTNLVTLYIYNNSLSGSIPS 197
L NQL S+P + LT L L +Y N L S+P
Sbjct: 164 LSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 24/151 (15%)
Query: 55 SPLSSWT--------LNNVTKIGSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFS-FSS 105
SPL+S T +N +T I A R+NS+ IG + D S ++
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVA-------NXTRLNSL---KIG-NNKITDLSPLAN 241
Query: 106 FPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFEN 165
L +L++ NQ+ + +++KLK L + SN S + +LS L +L L N
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297
Query: 166 QLSGSIPHSLGNLTNLVTLYIYNNSLSGSIP 196
QL +G LTNL TL++ N ++ P
Sbjct: 298 QLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 62 LNNVTKIGSCAWVG-----IHCNYG-ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQ 115
L N+TKI G + G + + +++LTS + S+ + YLDL
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL-QVLYLDLN 139
Query: 116 RNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSL 175
+ NI P G ++ L+YL + + S P + +LS L TL +N++S P L
Sbjct: 140 Q---ITNISPLAG-LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--L 191
Query: 176 GNLTNLVTLYIYNNSLSGSIP 196
+L NL+ +++ NN +S P
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP 212
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 84 VNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLF 143
+++++L GL+ L F L YL LQ N L ++ L +L L N
Sbjct: 106 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 144 SGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSE 198
L L L L +N ++ PH+ +L L+TLY++ N+LS +P+E
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAE 218
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 4/148 (2%)
Query: 102 SFSSFPHLAYLDLQRN-QLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160
+F+ L LDL N QL P + L L L P L+ L+ L
Sbjct: 74 AFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 161 HLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXI- 219
+L +N L ++ +L NL L+++ N + S+P +
Sbjct: 134 YLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 220 PQSLGNLSNLAILYIYNNSLSGLIPSEI 247
P + +L L LY++ N+LS ++P+E+
Sbjct: 193 PHAFRDLGRLMTLYLFANNLS-MLPAEV 219
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162
F S L LDL NQL + LK L + N + +P I L++L L L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 163 FENQLSGSIPH-SLGNLTNLVTLYIYNN 189
+NQL SIPH + L++L Y++ N
Sbjct: 143 DQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 55 SPLSSWTLNNVTKIGSCAWVGIHCNYGERVNS---MNLTSIGLKG----TLHDFSFSSFP 107
+ LS T +TK+ W+ + N + +++ +LT +G G L F
Sbjct: 48 ATLSDATFRGLTKL---TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 108 HLAYLD---LQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLF 163
HL LD L NQL ++P + ++KLK L L++N L+ L+TL L
Sbjct: 105 HLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 164 ENQLSGSIPH-SLGNLTNLVTLYIYNNSLSGS 194
NQL S+PH + L L T+ ++ N S
Sbjct: 164 TNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 18/195 (9%)
Query: 68 IGSCAWV-GIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFP-HLAYLDLQRNQLFGNIPP 125
+ +C V G CN G++ + +G D S P LDLQ L
Sbjct: 1 MKTCETVTGCTCNEGKK-------EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDA 53
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSL-GNLTNLVTL 184
++KL +L L N L+ L TL L NQL+ S+P + +LT L L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKL 112
Query: 185 YIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQ-SLGNLSNLAILYIYNNSLSGLI 243
Y+ N L S+PS IP + L+NL L + N L +
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-V 170
Query: 244 P----SEIGNLKSLS 254
P +G L++++
Sbjct: 171 PHGAFDRLGKLQTIT 185
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 55 SPLSSWTLNNVTKIGSCAWVGIHCNYGERVNS---MNLTSIGLKG----TLHDFSFSSFP 107
+ LS T +TK+ W+ + N + +++ +LT +G G L F
Sbjct: 48 ATLSDATFRGLTKL---TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 108 HLAYLD---LQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLF 163
HL LD L NQL ++P + ++KLK L L++N L+ L+TL L
Sbjct: 105 HLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 164 ENQLSGSIPH-SLGNLTNLVTLYIYNNSLSGS 194
NQL S+PH + L L T+ ++ N S
Sbjct: 164 TNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 18/195 (9%)
Query: 68 IGSCAWV-GIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFP-HLAYLDLQRNQLFGNIPP 125
+ +C V G CN G++ + +G D S P LDLQ L
Sbjct: 1 MKTCETVTGCTCNEGKK-------EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDA 53
Query: 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSL-GNLTNLVTL 184
++KL +L L N L+ L TL L NQL+ S+P + +LT L L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKL 112
Query: 185 YIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQ-SLGNLSNLAILYIYNNSLSGLI 243
Y+ N L S+PS IP + L+NL L + N L +
Sbjct: 113 YLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-V 170
Query: 244 P----SEIGNLKSLS 254
P +G L++++
Sbjct: 171 PHGAFDRLGKLQTIT 185
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 111 YLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGS 170
YL+LQ N + ++ L+ L LS NL L L TL LF+N+L+
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 171 IPHSLGNLTNLVTLYIYNNSLSGSIPS 197
+ L+ L L++ NN + SIPS
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIE-SIPS 124
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 111 YLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGS 170
YL+LQ N + ++ L+ L LS NL L L TL LF+N+L+
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 171 IPHSLGNLTNLVTLYIYNNSLSGSIPS 197
+ L+ L L++ NN + SIPS
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIE-SIPS 124
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 117 NQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSL- 175
+ +F +PP+I K L L SN +IP Q+ L L+ L++ NQL S+P +
Sbjct: 413 DTIFRCLPPRI------KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464
Query: 176 GNLTNLVTLYIYNNSLSGSIP 196
LT+L ++++ N S P
Sbjct: 465 DRLTSLQKIWLHTNPWDCSCP 485
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 128 GNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS--GSIPHSLGNLTNLVTLY 185
IS +L S+NL + + GHL+ L+TL L NQL I + +L L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 186 IYNNSLS 192
I NS+S
Sbjct: 381 ISQNSVS 387
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 109 LAYLDLQRNQLFGNIP--PQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160
L +LDL N F +P + GN+S+LK+LGLS+ + I HL+ K L
Sbjct: 92 LKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 106 FPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFEN 165
P++ YL L N+L + ++ L YL L+ N L+ LK L L EN
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 166 QLSGSIPHSL-GNLTNLVTLYIYNNSLSGSIPS 197
QL S+P + LTNL LY+Y+N L S+P
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLYLYHNQLQ-SLPK 150
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 97 TLHDFSFSSFPHLAYLDLQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQIGHLS 155
+L D F +L YL L NQL ++P + ++ L L L +N L+
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 156 YLKTLHLFENQLSGSIPHSL-GNLTNLVTLYIYNN 189
LK L L +NQL S+P + LT+L +++ NN
Sbjct: 182 QLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 63 NNVTKIGSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGN 122
N + KI A+ G+ + + +NL S L G L+ +F P +AY+DLQ+N +
Sbjct: 300 NKINKIADEAFYGL-----DNLQVLNL-SYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 123 IPPQIGNISKLKYLGLSSN 141
+ KL+ L L N
Sbjct: 354 QDQTFKFLEKLQTLDLRDN 372
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 34/149 (22%)
Query: 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL 167
+L L+L+ NQ+ P + N++K+ L LS N I L +KTL L Q+
Sbjct: 70 NLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQI 125
Query: 168 SGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEXXXXXXXXXXXXXXXXXXXXIPQSLGNLS 227
+ P L L+NL LY+ N ++ P L L+
Sbjct: 126 TDVTP--LAGLSNLQVLYLDLNQITNISP--------------------------LAGLT 157
Query: 228 NLAILYIYNNSLSGLIPSEIGNLKSLSNL 256
NL L I NN ++ L P + NL L+ L
Sbjct: 158 NLQYLSIGNNQVNDLTP--LANLSKLTTL 184
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 28/119 (23%)
Query: 78 CNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLG 137
C + E + +NL+S L G++ F +PP K+K L
Sbjct: 424 CAWAESILVLNLSSNMLTGSV---------------------FRCLPP------KVKVLD 456
Query: 138 LSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIP 196
L +N +IP + HL L+ L++ NQL LT+L +++++N + P
Sbjct: 457 LHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQLFGNIP--PQIGNISKLKYLGLSSNLFSGAIPPQIGHL 154
L + S L +LDL N F +P + GN++KL +LGLS+ F + HL
Sbjct: 112 LQNISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 54/121 (44%), Gaps = 29/121 (23%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL-- 133
L +SF SFP L LDL R + L GN P Q +G S L
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSS 103
Query: 134 --KYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNS 190
K + L +NL S P IGHL LK L++ N + S +P NLTNL L + +N
Sbjct: 104 LQKLVALETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
Query: 191 L 191
+
Sbjct: 163 I 163
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 120 FGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160
+ N+PP++ + L YLGL S + P+ H YL TL
Sbjct: 187 YANVPPEVEEKA-LSYLGLKPEPVSTQVVPRDRHAFYLSTL 226
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 120 FGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160
+ N+PP++ + L YLGL S + P+ H YL TL
Sbjct: 186 YANVPPEVEEKA-LSYLGLKPEPVSTQVVPRDRHAFYLSTL 225
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 101 FSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL----K 134
+SF SFP L LDL R + L GN P Q +G S L K
Sbjct: 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQK 128
Query: 135 YLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNSLSG 193
+ + +NL S P IGHL LK L++ N + S +P NLTNL L + +N +
Sbjct: 129 LVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 76 IHCNYGE----RVNSMN-LTSIGLKGTLHDFSFSSFPHLAYLDLQRNQL-FGNIPPQ--I 127
++C +G+ ++ S+ LT KG + FS P L +LDL RN L F Q
Sbjct: 336 VNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394
Query: 128 GNISKLKYLGLSSNLFSGAIP--------PQIGHLSY 156
G IS LKYL LS F+G I Q+ HL +
Sbjct: 395 GTIS-LKYLDLS---FNGVITMSSNFLGLEQLEHLDF 427
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 101 FSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL----K 134
+SF SFP L LDL R + L GN P Q +G S L K
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQK 104
Query: 135 YLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNSLSG 193
+ + +NL S P IGHL LK L++ N + S +P NLTNL L + +N +
Sbjct: 105 LVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 29/121 (23%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL-- 133
L +SF SFP L LDL R + L GN P Q +G S L
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSS 101
Query: 134 --KYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNS 190
K + + +NL S P IGHL LK L++ N + S +P NLTNL L + +N
Sbjct: 102 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 191 L 191
+
Sbjct: 161 I 161
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162
F+ +L +LDL + QL P ++S L+ L ++SN L+ L+ + L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 163 FENQLSGSIPH 173
N S P
Sbjct: 526 HTNPWDCSCPR 536
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 29/121 (23%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL-- 133
L +SF SFP L LDL R + L GN P Q +G S L
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSS 102
Query: 134 --KYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNS 190
K + + +NL S P IGHL LK L++ N + S +P NLTNL L + +N
Sbjct: 103 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
Query: 191 L 191
+
Sbjct: 162 I 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 29/121 (23%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL-- 133
L +SF SFP L LDL R + L GN P Q +G S L
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSS 102
Query: 134 --KYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNS 190
K + + +NL S P IGHL LK L++ N + S +P NLTNL L + +N
Sbjct: 103 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
Query: 191 L 191
+
Sbjct: 162 I 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 29/121 (23%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL-- 133
L +SF SFP L LDL R + L GN P Q +G S L
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSS 103
Query: 134 --KYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNS 190
K + + +NL S P IGHL LK L++ N + S +P NLTNL L + +N
Sbjct: 104 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
Query: 191 L 191
+
Sbjct: 163 I 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 29/123 (23%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQ-------------------LFGNIPPQ---IGNISKL-- 133
L +SF SFP L LDL R + L GN P Q +G S L
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSS 101
Query: 134 --KYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL-SGSIPHSLGNLTNLVTLYIYNNS 190
K + + +NL S P IGHL LK L++ N + S +P NLTNL L + +N
Sbjct: 102 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 191 LSG 193
+
Sbjct: 161 IQS 163
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 107 PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ 166
P L L L N++ + ++ L LGLS N S + + +L+ LHL N+
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 167 LSGSIPHSLGNLTNLVTLYIYNNSLSG 193
L +P L + + +Y++NN++S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 77 HCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYL 136
C RV + + +GL+ D P A LDLQ N++ N+ L L
Sbjct: 28 RCQCHLRV--VQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 137 GLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLS 192
L +N S P L L+ L+L +NQL +P + L L ++ N ++
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 107 PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ 166
P L L L N++ + ++ L LGLS N S + + +L+ LHL N+
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 167 LSGSIPHSLGNLTNLVTLYIYNNSLSG 193
L +P L + + +Y++NN++S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA 277
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 77 HCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYL 136
C RV + + +GL+ D P A LDLQ N++ N+ L L
Sbjct: 28 RCQCHLRV--VQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 137 GLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLS 192
L +N S P L L+ L+L +NQL +P + L L ++ N ++
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 113 DLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIP 172
DL ++++F + + + L+ L L+ N + L++LK L L NQL S+P
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVP 339
Query: 173 HSL-GNLTNLVTLYIYNNSLSGSIP 196
+ LT+L ++++ N S P
Sbjct: 340 DGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 21 FCVLNFP----LIVSSYSMEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGI 76
C L FP L + + ME + + + G LS +L + SC W
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS- 253
Query: 77 HCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIP----PQIGNIS 131
++NS+NL+ GLK L+ LDL N+L N PQ+GN+S
Sbjct: 254 ------QLNSLNLSFTGLKQVPKGLPA----KLSVLDLSYNRLDRNPSPDELPQVGNLS 302
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 88 NLTSIGLK-GTLHDF---SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLF 143
NLT + L LHD SFS P L YL L+ N + P +S L+YL L
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFT 308
Query: 144 SGAIP----PQIGHLSY--LKTLHLFENQLSGSIPHSLGN-LTNLVTL 184
++ P I S+ LK L + N +IP + N T LV+L
Sbjct: 309 KQSVSLASHPNIDDFSFQWLKYLE-YLNMDDNNIPSTKSNTFTGLVSL 355
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 72 AWVGIHCNYGERVNSMNLTSI--GLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGN 129
A+ G+ NY R++ LT I L TL++ HL + +Q +L +
Sbjct: 168 AFDGLKLNY-LRISEAKLTGIPKDLPETLNEL------HLDHNKIQAIEL-----EDLLR 215
Query: 130 ISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189
SKL LGL N + L L+ LHL N+LS +P L +L L +Y++ N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274
Query: 190 SLS 192
+++
Sbjct: 275 NIT 277
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 73 WVGIHCNYGERVNSMNLTSIGLKGTLHDF---SFSSFPHLAYLDLQRNQLFGNIPPQIGN 129
W GI N NL S+ ++ + + P L LDL+ N PP G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 130 ISKLKYLGLS--SNLFSGAIPPQIGHLSYLKTLHL 162
+ LK L L SNL + +P I L+ L+ L L
Sbjct: 252 RAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDL 284
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 98 LHDFSFSSFPHLAYLDLQR-----NQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQI- 151
+ +S P D QR NQ+ P ++ L+ L +SN + AIP +
Sbjct: 19 CQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVF 77
Query: 152 GHLSYLKTLHLFENQLSGSIPH-SLGNLTNLVTLYIYNN 189
L+ L L L +N L SIP + NL +L +Y+YNN
Sbjct: 78 DKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 129 NISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSL-GNLTNLVTLYIY 187
++ L YL LS+N L+ LK L L NQL S+P + LT L L +Y
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132
Query: 188 NNSLSGSIPS 197
N L S+P
Sbjct: 133 QNQLK-SVPD 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162
F+ + L LD+ N + P + LK L L N S + L LHL
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGS 194
N + + NL+TL + +N LS +
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162
F+ + L LD+ N + P + LK L L N S + L LHL
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGS 194
N + + NL+TL + +N LS +
Sbjct: 110 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%)
Query: 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162
F+ + L LD+ N + P + LK L L N S + L LHL
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGS 194
N + + NL+TL + +N LS +
Sbjct: 115 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 112 LDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQI-GHLSYLKTLHLFENQLSGS 170
L L NQ+ P ++++L YL L+ N + A+P + L+ L L L NQL S
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGVFDKLTKLTHLALHINQLK-S 102
Query: 171 IPHSL-GNLTNLVTLYIYNN 189
IP + NL +L +Y++NN
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYL 157
L +SFS+F L +LDL R ++ + L L L+ N P L+ L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 158 KTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189
+ L E +L+ +G L L L + +N
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%)
Query: 98 LHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYL 157
L +SFS+F L +LDL R ++ + L L L+ N P L+ L
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Query: 158 KTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189
+ L E +L+ +G L L L + +N
Sbjct: 102 ENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLK--YLGLSSNLFSGAIPPQIGHLSYLKT 159
+F+S + ++DL N+L + I +S LK YL L+SN S +P + LS +T
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSS---SIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551
Query: 160 LHLFENQLSGS 170
++L +N L +
Sbjct: 552 INLRQNPLDCT 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,715,417
Number of Sequences: 62578
Number of extensions: 248760
Number of successful extensions: 830
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 216
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)