Query 035658
Match_columns 256
No_of_seqs 392 out of 2869
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.3E-31 7.2E-36 255.5 19.8 215 34-255 27-264 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.9E-23 8.3E-28 199.7 11.7 165 83-250 119-283 (968)
3 KOG0617 Ras suppressor protein 99.8 1.1E-22 2.3E-27 152.4 -5.6 163 82-251 33-196 (264)
4 KOG4194 Membrane glycoprotein 99.8 2E-19 4.3E-24 156.8 3.2 173 83-256 150-346 (873)
5 KOG4194 Membrane glycoprotein 99.8 1.2E-18 2.6E-23 151.9 6.8 172 83-256 79-250 (873)
6 KOG0617 Ras suppressor protein 99.7 3.6E-20 7.7E-25 138.9 -4.6 149 103-256 29-178 (264)
7 PLN03150 hypothetical protein; 99.7 3.8E-17 8.2E-22 150.3 13.9 159 32-196 368-532 (623)
8 KOG4237 Extracellular matrix p 99.7 2.2E-18 4.8E-23 143.9 -0.1 174 82-256 67-351 (498)
9 KOG0444 Cytoskeletal regulator 99.7 3.6E-18 7.8E-23 150.3 -3.4 166 84-254 128-319 (1255)
10 KOG0444 Cytoskeletal regulator 99.6 6.3E-17 1.4E-21 142.5 -2.0 153 83-240 33-186 (1255)
11 KOG0472 Leucine-rich repeat pr 99.5 1E-16 2.2E-21 134.5 -6.8 164 84-256 139-302 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 1.4E-15 3E-20 127.8 -2.5 152 83-240 389-541 (565)
13 cd00116 LRR_RI Leucine-rich re 99.5 3.6E-15 7.8E-20 126.7 -0.3 158 82-240 81-263 (319)
14 PLN03210 Resistant to P. syrin 99.5 5.1E-13 1.1E-17 131.1 13.6 103 83-189 612-714 (1153)
15 cd00116 LRR_RI Leucine-rich re 99.5 8.3E-15 1.8E-19 124.5 -0.1 159 82-241 51-235 (319)
16 PRK15387 E3 ubiquitin-protein 99.4 4.8E-13 1E-17 124.3 9.0 44 204-248 423-466 (788)
17 PLN03210 Resistant to P. syrin 99.4 1.9E-12 4.1E-17 127.2 13.3 82 82-166 634-715 (1153)
18 PLN03150 hypothetical protein; 99.4 6.9E-13 1.5E-17 122.3 9.0 107 133-239 420-527 (623)
19 KOG0618 Serine/threonine phosp 99.4 5.4E-15 1.2E-19 135.1 -4.9 168 83-256 220-435 (1081)
20 PRK15370 E3 ubiquitin-protein 99.4 8.4E-13 1.8E-17 122.9 9.1 56 82-144 199-254 (754)
21 PRK15370 E3 ubiquitin-protein 99.4 6.1E-13 1.3E-17 123.9 7.4 143 82-241 220-381 (754)
22 PRK15387 E3 ubiquitin-protein 99.4 2.7E-12 5.9E-17 119.3 11.1 47 204-255 403-449 (788)
23 KOG0618 Serine/threonine phosp 99.4 4.2E-14 9.2E-19 129.3 -2.5 131 106-239 358-488 (1081)
24 KOG0532 Leucine-rich repeat (L 99.3 1.2E-14 2.5E-19 126.9 -6.7 138 102-247 116-253 (722)
25 PF14580 LRR_9: Leucine-rich r 99.3 4.5E-13 9.7E-18 103.4 2.4 127 103-234 15-147 (175)
26 PF14580 LRR_9: Leucine-rich r 99.3 9.1E-13 2E-17 101.7 3.1 125 127-256 15-145 (175)
27 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.6E-18 115.9 -2.3 91 150-240 269-359 (498)
28 KOG0532 Leucine-rich repeat (L 99.3 9.2E-14 2E-18 121.3 -4.6 164 83-256 76-239 (722)
29 COG4886 Leucine-rich repeat (L 99.3 3.2E-12 7E-17 112.0 4.9 152 82-240 116-268 (394)
30 KOG1259 Nischarin, modulator o 99.2 6.2E-13 1.4E-17 108.4 -1.8 132 106-243 283-415 (490)
31 COG4886 Leucine-rich repeat (L 99.2 9.7E-12 2.1E-16 109.0 4.4 156 83-246 141-296 (394)
32 PF13855 LRR_8: Leucine rich r 99.1 6.7E-11 1.5E-15 75.5 3.1 57 133-189 3-59 (61)
33 PF13855 LRR_8: Leucine rich r 99.1 6.6E-11 1.4E-15 75.5 2.6 61 107-167 1-61 (61)
34 KOG1259 Nischarin, modulator o 99.0 4.7E-11 1E-15 97.6 -1.4 130 82-218 284-414 (490)
35 KOG3207 Beta-tubulin folding c 98.9 2.4E-10 5.1E-15 97.5 0.1 160 82-241 146-315 (505)
36 KOG3207 Beta-tubulin folding c 98.8 9.6E-10 2.1E-14 93.8 0.7 163 78-241 168-340 (505)
37 KOG1909 Ran GTPase-activating 98.7 2.5E-09 5.5E-14 88.9 0.8 159 82-240 92-283 (382)
38 KOG1859 Leucine-rich repeat pr 98.6 2.7E-10 5.9E-15 102.6 -8.1 126 108-240 165-292 (1096)
39 KOG1909 Ran GTPase-activating 98.6 9.3E-09 2E-13 85.6 0.9 141 102-242 87-256 (382)
40 KOG4658 Apoptotic ATPase [Sign 98.6 3E-08 6.4E-13 94.4 4.2 106 107-213 545-652 (889)
41 PF08263 LRRNT_2: Leucine rich 98.6 8.1E-08 1.7E-12 56.4 4.0 42 35-79 2-43 (43)
42 KOG0531 Protein phosphatase 1, 98.6 7.8E-09 1.7E-13 91.3 -0.8 104 82-192 95-199 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.6 5.7E-08 1.2E-12 92.5 4.5 127 83-210 546-675 (889)
44 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.8E-13 89.9 -0.4 130 103-240 91-221 (414)
45 KOG4579 Leucine-rich repeat (L 98.4 7.7E-09 1.7E-13 75.4 -3.9 103 110-216 30-136 (177)
46 KOG1859 Leucine-rich repeat pr 98.4 1.9E-08 4.1E-13 91.0 -2.4 104 132-241 165-268 (1096)
47 KOG4579 Leucine-rich repeat (L 98.4 3.3E-08 7.1E-13 72.1 -1.8 84 82-168 53-136 (177)
48 KOG2120 SCF ubiquitin ligase, 98.3 4.6E-09 1E-13 85.9 -7.3 155 83-238 186-349 (419)
49 KOG1644 U2-associated snRNP A' 98.3 1.6E-06 3.5E-11 67.3 5.9 105 107-213 42-150 (233)
50 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3.1E-11 51.3 3.4 35 133-168 3-37 (44)
51 KOG1644 U2-associated snRNP A' 98.2 4.1E-06 9E-11 65.1 5.9 103 83-188 43-149 (233)
52 KOG2982 Uncharacterized conser 98.2 9E-07 2E-11 72.7 2.1 159 82-241 71-263 (418)
53 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.5E-11 50.6 3.1 36 204-240 2-37 (44)
54 KOG3665 ZYG-1-like serine/thre 98.1 1.8E-06 3.8E-11 80.5 2.0 134 107-242 122-265 (699)
55 PF13306 LRR_5: Leucine rich r 98.0 1.8E-05 3.9E-10 57.9 7.0 99 150-253 30-128 (129)
56 PF13306 LRR_5: Leucine rich r 98.0 2.1E-05 4.5E-10 57.6 6.8 125 99-229 4-128 (129)
57 PRK15386 type III secretion pr 98.0 2.9E-05 6.4E-10 67.5 8.2 71 82-167 52-124 (426)
58 KOG3665 ZYG-1-like serine/thre 97.9 3.6E-06 7.8E-11 78.4 1.0 135 82-218 122-265 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.9 1.1E-05 2.4E-10 65.7 3.4 140 102-241 87-256 (388)
60 KOG2982 Uncharacterized conser 97.8 5.8E-06 1.3E-10 68.0 1.3 151 104-254 68-252 (418)
61 KOG2120 SCF ubiquitin ligase, 97.8 1.2E-07 2.7E-12 77.7 -8.4 148 108-255 186-342 (419)
62 PRK15386 type III secretion pr 97.8 0.00012 2.6E-09 63.8 8.2 119 103-237 48-187 (426)
63 KOG2739 Leucine-rich acidic nu 97.7 1.6E-05 3.5E-10 64.2 2.1 86 103-192 39-129 (260)
64 COG5238 RNA1 Ran GTPase-activa 97.7 1.7E-05 3.6E-10 64.6 1.8 41 127-167 88-132 (388)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00017 3.8E-09 58.3 2.8 101 83-188 44-152 (260)
66 KOG2123 Uncharacterized conser 97.2 1.4E-05 3E-10 65.3 -4.3 102 78-185 15-123 (388)
67 KOG2123 Uncharacterized conser 97.2 1.2E-05 2.5E-10 65.7 -5.1 101 105-209 17-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0016 3.6E-08 31.9 0.7 20 229-249 2-21 (22)
69 PF00560 LRR_1: Leucine Rich R 96.1 0.0023 4.9E-08 31.4 0.6 11 134-144 3-13 (22)
70 KOG4308 LRR-containing protein 95.3 0.0001 2.2E-09 66.0 -10.5 36 84-120 89-128 (478)
71 KOG0473 Leucine-rich repeat pr 94.2 0.00065 1.4E-08 54.4 -7.2 92 98-192 33-124 (326)
72 PF13504 LRR_7: Leucine rich r 93.9 0.035 7.6E-07 25.3 1.1 10 157-166 3-12 (17)
73 KOG0473 Leucine-rich repeat pr 93.7 0.00086 1.9E-08 53.7 -7.4 86 80-169 40-125 (326)
74 KOG1947 Leucine rich repeat pr 93.5 0.017 3.6E-07 51.7 -0.7 35 106-140 187-223 (482)
75 KOG4308 LRR-containing protein 93.3 0.00048 1E-08 61.8 -10.7 159 82-241 115-304 (478)
76 smart00369 LRR_TYP Leucine-ric 92.8 0.1 2.2E-06 26.5 1.9 21 227-247 2-22 (26)
77 smart00370 LRR Leucine-rich re 92.8 0.1 2.2E-06 26.5 1.9 21 227-247 2-22 (26)
78 smart00370 LRR Leucine-rich re 92.0 0.17 3.6E-06 25.6 2.2 13 132-144 3-15 (26)
79 smart00369 LRR_TYP Leucine-ric 92.0 0.17 3.6E-06 25.6 2.2 13 132-144 3-15 (26)
80 KOG3864 Uncharacterized conser 92.0 0.021 4.6E-07 44.8 -1.8 84 155-238 101-187 (221)
81 KOG1947 Leucine rich repeat pr 91.8 0.05 1.1E-06 48.6 0.1 108 102-209 209-327 (482)
82 PF13516 LRR_6: Leucine Rich r 90.5 0.05 1.1E-06 27.1 -0.7 16 227-242 2-17 (24)
83 KOG3864 Uncharacterized conser 90.0 0.025 5.5E-07 44.4 -3.0 83 130-212 100-185 (221)
84 KOG4341 F-box protein containi 88.0 0.23 5E-06 43.4 1.0 134 105-238 292-437 (483)
85 smart00365 LRR_SD22 Leucine-ri 82.3 1.2 2.7E-05 22.6 1.8 14 155-168 2-15 (26)
86 smart00368 LRR_RI Leucine rich 78.5 1.8 3.9E-05 22.3 1.7 14 155-168 2-15 (28)
87 smart00364 LRR_BAC Leucine-ric 75.6 2 4.2E-05 21.9 1.2 13 132-144 3-15 (26)
88 KOG4341 F-box protein containi 65.2 4 8.6E-05 36.0 1.7 111 104-214 317-437 (483)
89 KOG3763 mRNA export factor TAP 60.4 3.9 8.5E-05 37.2 0.8 36 130-165 217-254 (585)
90 KOG3763 mRNA export factor TAP 57.0 6.3 0.00014 36.0 1.5 64 104-169 215-284 (585)
91 smart00367 LRR_CC Leucine-rich 49.2 12 0.00027 18.5 1.3 11 131-141 2-12 (26)
92 TIGR00864 PCC polycystin catio 39.8 24 0.00052 38.7 2.7 32 113-144 1-32 (2740)
93 TIGR00864 PCC polycystin catio 37.7 23 0.0005 38.8 2.3 32 88-120 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.3e-31 Score=255.52 Aligned_cols=215 Identities=43% Similarity=0.671 Sum_probs=155.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEE
Q 035658 34 SMEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLD 113 (256)
Q Consensus 34 ~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~~~~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~ 113 (256)
.++|+.||++||+++.+ +...+.+|. ...++|.|.|+.|...++|+.|+++++++.|.++. .+..+++|+.|+
T Consensus 27 ~~~~~~~l~~~~~~~~~--~~~~~~~w~----~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSIND--PLKYLSNWN----SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCC--CcccCCCCC----CCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEE
Confidence 56899999999999975 456678997 45689999999998778999999999999988877 888888899999
Q ss_pred CCCCcCCCCCchhcc-CCccCcEeeccCCcCC----------------------CCChhhhcCCCCCCEEEcccCCCCcc
Q 035658 114 LQRNQLFGNIPPQIG-NISKLKYLGLSSNLFS----------------------GAIPPQIGHLSYLKTLHLFENQLSGS 170 (256)
Q Consensus 114 L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~----------------------~~~p~~~~~l~~L~~L~ls~n~l~~~ 170 (256)
+++|++.+.+|..+. .+++|++|++++|.++ +.+|..++++++|++|++++|.+.+.
T Consensus 100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 988888877776543 5666666666666554 34455566666666666666666666
Q ss_pred CCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCC
Q 035658 171 IPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNL 250 (256)
Q Consensus 171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 250 (256)
+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCC
Q 035658 251 KSLSN 255 (256)
Q Consensus 251 ~~L~~ 255 (256)
++|++
T Consensus 260 ~~L~~ 264 (968)
T PLN00113 260 KNLQY 264 (968)
T ss_pred CCCCE
Confidence 66654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=3.9e-23 Score=199.70 Aligned_cols=165 Identities=45% Similarity=0.722 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.|++++|++.+.+|. ..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 566666666666554433 23444444444444444444444444444444444444444444444444444444444
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++++++|++|++++|.+++.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 44444444444444444444444444444444444444444444444444444333343344444444444444433333
Q ss_pred CChhccCC
Q 035658 243 IPSEIGNL 250 (256)
Q Consensus 243 ~p~~l~~l 250 (256)
+|..+.++
T Consensus 276 ~p~~l~~l 283 (968)
T PLN00113 276 IPPSIFSL 283 (968)
T ss_pred CchhHhhc
Confidence 33333333
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-22 Score=152.43 Aligned_cols=163 Identities=29% Similarity=0.537 Sum_probs=149.4
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
++++.+.+++|.++ .+|+ .++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 57899999999998 5666 7999999999999999998 68999999999999999999998 8999999999999999
Q ss_pred cccCCCC-ccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 162 LFENQLS-GSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 162 ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
+++|++. ..+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 9999987 458888999999999999999998 78889999999999999999987 78999999999999999999999
Q ss_pred ccCChhccCCC
Q 035658 241 GLIPSEIGNLK 251 (256)
Q Consensus 241 ~~~p~~l~~l~ 251 (256)
.+|++++++.
T Consensus 187 -vlppel~~l~ 196 (264)
T KOG0617|consen 187 -VLPPELANLD 196 (264)
T ss_pred -ecChhhhhhh
Confidence 6666777653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=2e-19 Score=156.76 Aligned_cols=173 Identities=21% Similarity=0.186 Sum_probs=128.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
.++.+||+.|.++ +++...|..-.++++|+|++|+|+....+.|..+.+|.+|.|+.|+++...+..|.++++|+.|+|
T Consensus 150 alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 150 ALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 4677888888877 555557777778888888888888777777888888888888888888666667777888888777
Q ss_pred ccCCCCcc------------------------CCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCccc
Q 035658 163 FENQLSGS------------------------IPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGS 218 (256)
Q Consensus 163 s~n~l~~~------------------------~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 218 (256)
..|+|.-. ....|..+.++++|+|..|++...-.+.+.+++.|++|++++|.+..+
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 77776522 123455566667777777777655556667778888888888888777
Q ss_pred CcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 219 IPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
.++.+...++|++|++++|+|+...+..|..+..|++|
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 77788888888888888888887777777766666543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.2e-18 Score=151.90 Aligned_cols=172 Identities=25% Similarity=0.311 Sum_probs=147.3
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
.++.|++++|.+...-+. .|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~-~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFE-FFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHH-HHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 578899999999865555 7899999999999999998 67876666677999999999999888888999999999999
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
|.|.|+..--..|..-.++++|+|++|+|+....+.|..+.+|.+|.|+.|+++...+..|+++++|+.|++..|+|.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999865555676667899999999999988888999999999999999999977778888899999999999998744
Q ss_pred CChhccCCCCCCCC
Q 035658 243 IPSEIGNLKSLSNL 256 (256)
Q Consensus 243 ~p~~l~~l~~L~~L 256 (256)
--..|.++++|+.|
T Consensus 237 e~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNL 250 (873)
T ss_pred hhhhhcCchhhhhh
Confidence 45567777777653
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=3.6e-20 Score=138.92 Aligned_cols=149 Identities=32% Similarity=0.551 Sum_probs=136.1
Q ss_pred cCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCc
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLV 182 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 182 (256)
+-.+.+++.|.+++|.++ .+|+.++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+++|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 556778899999999998 67888999999999999999999 88999999999999999999998 7899999999999
Q ss_pred eEEeecCcCcc-cCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 183 TLYIYNNSLSG-SIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 183 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
.||+..|.+.. .+|+.|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+- ..|.+++.++.|++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 99999999864 68899999999999999999997 88899999999999999999987 578889888887653
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=3.8e-17 Score=150.31 Aligned_cols=159 Identities=32% Similarity=0.538 Sum_probs=129.1
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccceeecCCC-----CCEEEEEcCCCCCccccCCcccCCC
Q 035658 32 SYSMEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCNYG-----ERVNSMNLTSIGLKGTLHDFSFSSF 106 (256)
Q Consensus 32 ~~~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~~~~c~~~gv~c~~~-----~~v~~l~L~~~~l~~~~~~~~~~~l 106 (256)
...++|..||+.+|+.+..+ . ..+|.+. ......|.|.|+.|... ..++.|+|+++++.|.+|. .+..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~--~--~~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLP--L--RFGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcCCc--c--cCCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhCC
Confidence 34567999999999998652 1 2478621 11111237999999632 2489999999999999988 89999
Q ss_pred CCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCC-CCCceEE
Q 035658 107 PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNL-TNLVTLY 185 (256)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~ 185 (256)
++|+.|+|++|.+.+.+|..++.+++|++|++++|.+++.+|+.++++++|++|++++|.+++.+|..+... .++..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999887654 4677888
Q ss_pred eecCcCcccCC
Q 035658 186 IYNNSLSGSIP 196 (256)
Q Consensus 186 L~~n~l~~~~~ 196 (256)
+.+|......|
T Consensus 522 ~~~N~~lc~~p 532 (623)
T PLN03150 522 FTDNAGLCGIP 532 (623)
T ss_pred ecCCccccCCC
Confidence 88887544333
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=2.2e-18 Score=143.93 Aligned_cols=174 Identities=24% Similarity=0.301 Sum_probs=136.4
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccC-CcCCCCChhhh---------
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSS-NLFSGAIPPQI--------- 151 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~--------- 151 (256)
...+.|+|..|+|+ .+|+.+|..+++|+.|+|++|+|+.+.|++|.++++|..|-+.+ |+|+......|
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 46889999999999 56666999999999999999999999999999999988877766 88874333333
Q ss_pred ---------------cCCCCCCEEEcccCCCCccCC--------------------------------------------
Q 035658 152 ---------------GHLSYLKTLHLFENQLSGSIP-------------------------------------------- 172 (256)
Q Consensus 152 ---------------~~l~~L~~L~ls~n~l~~~~p-------------------------------------------- 172 (256)
..++++..|.+.+|.+....-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 334455555554443321000
Q ss_pred ------------------------------------------ccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEc
Q 035658 173 ------------------------------------------HSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLAL 210 (256)
Q Consensus 173 ------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 210 (256)
..|..+++|+.|+|++|++++.-+..|.....++.|+|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 24567888999999999998888888888899999999
Q ss_pred cCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 211 SSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 211 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
..|++.......|.++..|+.|++.+|+|+...|..|..+.+|.+|
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 9998886667778889999999999999998888888887777653
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=3.6e-18 Score=150.28 Aligned_cols=166 Identities=34% Similarity=0.519 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCC------------------
Q 035658 84 VNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSG------------------ 145 (256)
Q Consensus 84 v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------------ 145 (256)
...|+|++|++. .+|...|.+++.|-.|+|++|++. .+|+.+..+..|++|+|++|.+..
T Consensus 128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 334444444443 333334444555555555555544 344444445555555555554321
Q ss_pred -------CChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCccc
Q 035658 146 -------AIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGS 218 (256)
Q Consensus 146 -------~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 218 (256)
.+|.++..+.+|..+|+|.|.+. .+|+.+.++++|+.|+|++|+|+ .+.-....+.+|++|+++.|+++ .
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~ 282 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-V 282 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-c
Confidence 12333333334444444444443 33444444444444444444444 22222333344444444444444 4
Q ss_pred CcccccCCCCCCEEEcccCccc-ccCChhccCCCCCC
Q 035658 219 IPQSLGNLSNLAILYIYNNSLS-GLIPSEIGNLKSLS 254 (256)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~ 254 (256)
+|+++.+++.|+.|.+.+|+++ ..+|+.++++..|+
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 4555555555555555555443 12344555554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=6.3e-17 Score=142.55 Aligned_cols=153 Identities=27% Similarity=0.389 Sum_probs=90.8
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCC-CCChhhhcCCCCCCEEE
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFS-GAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~ 161 (256)
+++-|.|...++. .+|. .++.+.+|++|.+.+|++. .+...+..++.|+.+++.+|++. .-+|..+-.+..|..||
T Consensus 33 ~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred heeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 4444555444443 3444 5555555566666666554 23344555566666666666553 12455555666677777
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
+|+|+++ ..|..+..-+++..|+|++|+|.......+.+++.|-.|||++|++. .+|..+..+..|+.|++++|.+.
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence 7777766 55666666666667777777766333334556666677777777765 55556666667777777777655
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.52 E-value=1e-16 Score=134.48 Aligned_cols=164 Identities=30% Similarity=0.439 Sum_probs=124.1
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcc
Q 035658 84 VNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLF 163 (256)
Q Consensus 84 v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 163 (256)
+..++..+|++. .+|+ .+..+.++..+++.+|.+....|+.+ .++.|++||..+|-++ .+|+.++.+.+|+.|++.
T Consensus 139 l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 445555566665 4555 56677777777777777764444333 3778888888888777 778888888888888888
Q ss_pred cCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccC
Q 035658 164 ENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLI 243 (256)
Q Consensus 164 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 243 (256)
+|++. .+| .|.++..|.+++++.|.+.....+...+++++.+||+.+|+++ ..|+.+..+.+|++||+++|.|++ .
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-L 290 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-L 290 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-C
Confidence 88887 566 6788888888888888887333334558899999999999998 788888889999999999999995 5
Q ss_pred ChhccCCCCCCCC
Q 035658 244 PSEIGNLKSLSNL 256 (256)
Q Consensus 244 p~~l~~l~~L~~L 256 (256)
|.+++++ .|+.|
T Consensus 291 p~sLgnl-hL~~L 302 (565)
T KOG0472|consen 291 PYSLGNL-HLKFL 302 (565)
T ss_pred Ccccccc-eeeeh
Confidence 6678887 66543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=1.4e-15 Score=127.76 Aligned_cols=152 Identities=34% Similarity=0.504 Sum_probs=123.9
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCc-EEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLA-YLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
-|+.++++.|++. ++|. .+..+..+. .+.+++|.+. -+|..+..+++|..|++++|.+. .+|..++.+..|+.|+
T Consensus 389 ~Vt~VnfskNqL~-elPk-~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPK-RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLN 464 (565)
T ss_pred ceEEEecccchHh-hhhh-hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheec
Confidence 4788888888876 5555 343333333 3456666654 56777888999999999999888 7888888888899999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
++.|+|. .+|..+..+..++.+-.++|++....|..+.++.+|.+||+.+|.+. .+|..++++++|++|++.+|.|.
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999988 77888888778888888889998666667999999999999999998 78889999999999999999998
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=3.6e-15 Score=126.74 Aligned_cols=158 Identities=25% Similarity=0.297 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCC---CCCcEEECCCCcCCC----CCchhccCC-ccCcEeeccCCcCCCC----Chh
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSF---PHLAYLDLQRNQLFG----NIPPQIGNI-SKLKYLGLSSNLFSGA----IPP 149 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l---~~L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~p~ 149 (256)
.+++.++++++.+.+..+. .+..+ ++|++|++++|++.+ .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 3566666666665533222 22222 236666666665542 122233444 5566666666655522 222
Q ss_pred hhcCCCCCCEEEcccCCCCcc----CCccccCCCCCceEEeecCcCccc----CCcccCCCCCCCEEEccCCcCcccCcc
Q 035658 150 QIGHLSYLKTLHLFENQLSGS----IPHSLGNLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLALSSNKLSGSIPQ 221 (256)
Q Consensus 150 ~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~ 221 (256)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. +...+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 344455566666666555521 122233344555566655555432 122334455555555555555432111
Q ss_pred ccc-----CCCCCCEEEcccCccc
Q 035658 222 SLG-----NLSNLAILYIYNNSLS 240 (256)
Q Consensus 222 ~~~-----~l~~L~~L~l~~n~l~ 240 (256)
.+. ..+.|++|++++|.++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCC
Confidence 111 1245555555555554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=5.1e-13 Score=131.11 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=61.6
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.|+++++.+. .++. .+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 612 ~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 5566666666654 3444 456677777777776654445553 566677777777776555566666777777777777
Q ss_pred ccCCCCccCCccccCCCCCceEEeecC
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNN 189 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (256)
++|...+.+|..+ ++++|+.|++++|
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 7654333455433 3445555555444
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=8.3e-15 Score=124.50 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=121.1
Q ss_pred CCEEEEEcCCCCCcc------ccCCcccCCCCCCcEEECCCCcCCCCCchhccCCcc---CcEeeccCCcCCC----CCh
Q 035658 82 ERVNSMNLTSIGLKG------TLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISK---LKYLGLSSNLFSG----AIP 148 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~p 148 (256)
..++.++++++.+.+ .++. .+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+.
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 357888888887762 2233 5677899999999999998666666655555 9999999999873 233
Q ss_pred hhhcCC-CCCCEEEcccCCCCcc----CCccccCCCCCceEEeecCcCccc----CCcccCCCCCCCEEEccCCcCccc-
Q 035658 149 PQIGHL-SYLKTLHLFENQLSGS----IPHSLGNLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLALSSNKLSGS- 218 (256)
Q Consensus 149 ~~~~~l-~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~- 218 (256)
..+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+++.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 455667 8999999999999842 344566778999999999998852 333455668999999999998743
Q ss_pred ---CcccccCCCCCCEEEcccCcccc
Q 035658 219 ---IPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 219 ---~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+...+..+++|++|++++|.+++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCch
Confidence 34456678899999999999886
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=4.8e-13 Score=124.26 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhcc
Q 035658 204 SLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIG 248 (256)
Q Consensus 204 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 248 (256)
+|+.|++++|+++ .+|..+.++++|+.|++++|++++..+..+.
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 4555666666665 5666677777788888888888776666553
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=1.9e-12 Score=127.17 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.++++++...+.+|. +..+++|+.|++++|.....+|..+..+++|++|++++|..-..+|..+ ++++|++|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 4688888887765555554 6778888888888877666778888888888888888865444556544 556666666
Q ss_pred cccCC
Q 035658 162 LFENQ 166 (256)
Q Consensus 162 ls~n~ 166 (256)
+++|.
T Consensus 711 Lsgc~ 715 (1153)
T PLN03210 711 LSGCS 715 (1153)
T ss_pred CCCCC
Confidence 66553
No 18
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=6.9e-13 Score=122.30 Aligned_cols=107 Identities=39% Similarity=0.588 Sum_probs=72.4
Q ss_pred CcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccC
Q 035658 133 LKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSS 212 (256)
Q Consensus 133 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 212 (256)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+.++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667777777666676677777777777777777666666666677777777777777766666666777777777777
Q ss_pred CcCcccCcccccCC-CCCCEEEcccCcc
Q 035658 213 NKLSGSIPQSLGNL-SNLAILYIYNNSL 239 (256)
Q Consensus 213 n~l~~~~~~~~~~l-~~L~~L~l~~n~l 239 (256)
|.+++.+|..++.. .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 77766666665543 3455666666653
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=5.4e-15 Score=135.07 Aligned_cols=168 Identities=32% Similarity=0.420 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCC-----------------
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSG----------------- 145 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----------------- 145 (256)
+++.|+.+.|.+....+ -..-.+|+++++++|+++ .+|+.++.+.+|+.++..+|.++.
T Consensus 220 ~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred chheeeeccCcceeecc---ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 45555555555552111 112235666666666665 345666666666666666665541
Q ss_pred -----CChhhhcCCCCCCEEEcccCCCCccCCccc--------------------------cCCCCCceEEeecCcCccc
Q 035658 146 -----AIPPQIGHLSYLKTLHLFENQLSGSIPHSL--------------------------GNLTNLVTLYIYNNSLSGS 194 (256)
Q Consensus 146 -----~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~--------------------------~~l~~L~~L~L~~n~l~~~ 194 (256)
-+|.....++.|++|++..|.+. .+|+.+ ..++.|+.|++.+|.+++.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 33444455677777777777766 233211 1223466677777777766
Q ss_pred CCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 195 IPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 195 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
.-..+.+.++|++|+|++|++.......+.++..|++|+++||.++ .+|.++.+++.|++|
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 6566778888899999999887555566788888888899999888 456777777777653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=8.4e-13 Score=122.94 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCC
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFS 144 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 144 (256)
..++.|++++|+++ .+|. .+. ++|++|++++|+++ .+|..+. ++|+.|++++|.+.
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~-~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 199 EQITTLILDNNELK-SLPE-NLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCCcEEEecCCCCC-cCCh-hhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 35677777777776 3443 221 35666666666655 3343332 23444444444444
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=6.1e-13 Score=123.88 Aligned_cols=143 Identities=23% Similarity=0.408 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.++ .+|. .+. ++|+.|++++|++. .+|..+. .+|++|++++|+++ .+|..+. ++|++|+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~-~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPA-TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS 289 (754)
T ss_pred cCCCEEECCCCccc-cCCh-hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence 46788888888876 4444 222 35677777777766 4555443 35666777766666 4454443 3566666
Q ss_pred cccCCCCccCCcccc-------------------CCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCccc
Q 035658 162 LFENQLSGSIPHSLG-------------------NLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQS 222 (256)
Q Consensus 162 ls~n~l~~~~p~~~~-------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 222 (256)
+++|++++ +|..+. -.++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..
T Consensus 290 Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~ 364 (754)
T PRK15370 290 VYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPET 364 (754)
T ss_pred CCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChh
Confidence 66666653 232211 01345555555555552 343332 46666666666665 34443
Q ss_pred ccCCCCCCEEEcccCcccc
Q 035658 223 LGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~ 241 (256)
+. ++|+.|++++|.+++
T Consensus 365 lp--~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 365 LP--PTITTLDVSRNALTN 381 (754)
T ss_pred hc--CCcCEEECCCCcCCC
Confidence 32 456666666666663
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=2.7e-12 Score=119.30 Aligned_cols=47 Identities=32% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 204 SLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 204 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+.++++|+.
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETT 449 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCe
Confidence 34445555555442 3322 134556666666666 45666777776654
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=4.2e-14 Score=129.33 Aligned_cols=131 Identities=33% Similarity=0.356 Sum_probs=106.4
Q ss_pred CCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEE
Q 035658 106 FPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185 (256)
Q Consensus 106 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 185 (256)
++.|+.|++.+|.++...-+.+.++.+|+.|+|++|++.......+.++..|++|++|+|+++ .+|..+..++.|++|.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 445777888888888877777888999999999999998555566788999999999999998 6788888999999999
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcc
Q 035658 186 IYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSL 239 (256)
Q Consensus 186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 239 (256)
..+|++. ..| .+..++.|+.+|++.|+++...-..-...++|++||++||.-
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9999888 666 788899999999999998754322222338899999999973
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=1.2e-14 Score=126.87 Aligned_cols=138 Identities=34% Similarity=0.553 Sum_probs=83.7
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCC
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNL 181 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 181 (256)
.+.++..|++++|+.|+++ ..|..+..|+ |+.|-+++|+++ .+|+.++.+.+|..||.+.|.+. .+|..++.+.+|
T Consensus 116 ~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl 191 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL 191 (722)
T ss_pred hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH
Confidence 4555555555555555554 3444444333 555555555555 55555555566666666666665 455556666666
Q ss_pred ceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhc
Q 035658 182 VTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEI 247 (256)
Q Consensus 182 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 247 (256)
+.|++..|.+. .+|..+. .-.|..||+++|+++ .+|-.|.+|+.|++|-|.+|.++ .+|..+
T Consensus 192 r~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 192 RDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred HHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 66666666665 4455555 334677777777776 67777777777777777777776 344444
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=4.5e-13 Score=103.38 Aligned_cols=127 Identities=32% Similarity=0.395 Sum_probs=42.3
Q ss_pred cCCCCCCcEEECCCCcCCCCCchhcc-CCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccc-cCCCC
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPPQIG-NISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSL-GNLTN 180 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~ 180 (256)
+.+..++++|+|++|.|+. +. .++ .+.+|+.|++++|.++.. +.+..+++|++|++++|+|+. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 3444466777777777763 22 344 467777777777777743 346677777777777777774 33333 35677
Q ss_pred CceEEeecCcCccc-CCcccCCCCCCCEEEccCCcCcccC---cccccCCCCCCEEEc
Q 035658 181 LVTLYIYNNSLSGS-IPSELGNLKSLSNLALSSNKLSGSI---PQSLGNLSNLAILYI 234 (256)
Q Consensus 181 L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l 234 (256)
|++|++++|+|... .-..+..+++|++|++.+|+++... ...+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777777642 1234566777788888877776321 113456677777764
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=9.1e-13 Score=101.67 Aligned_cols=125 Identities=35% Similarity=0.387 Sum_probs=50.2
Q ss_pred ccCCccCcEeeccCCcCCCCChhhhc-CCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCccc-CCCCC
Q 035658 127 IGNISKLKYLGLSSNLFSGAIPPQIG-HLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEL-GNLKS 204 (256)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~ 204 (256)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.|+.. +.+..+++|++|++++|+++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 4556689999999999984 3 3455 578999999999999943 357889999999999999995 44344 46899
Q ss_pred CCEEEccCCcCcccC-cccccCCCCCCEEEcccCcccccC---ChhccCCCCCCCC
Q 035658 205 LSNLALSSNKLSGSI-PQSLGNLSNLAILYIYNNSLSGLI---PSEIGNLKSLSNL 256 (256)
Q Consensus 205 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---p~~l~~l~~L~~L 256 (256)
|++|++++|++.... -..++.+++|+.|++.+|+++... ...+..+|+|+.|
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 999999999997532 245678999999999999998542 2345677777643
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-13 Score=115.87 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=83.6
Q ss_pred hhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCC
Q 035658 150 QIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNL 229 (256)
Q Consensus 150 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 229 (256)
.|..+++|+.|++++|+++++-+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+++...|.+|..+.+|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 35678999999999999999889999999999999999999987777789999999999999999998899999999999
Q ss_pred CEEEcccCccc
Q 035658 230 AILYIYNNSLS 240 (256)
Q Consensus 230 ~~L~l~~n~l~ 240 (256)
.+|++-.|.+.
T Consensus 349 ~~l~l~~Np~~ 359 (498)
T KOG4237|consen 349 STLNLLSNPFN 359 (498)
T ss_pred eeeehccCccc
Confidence 99999888764
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=9.2e-14 Score=121.35 Aligned_cols=164 Identities=32% Similarity=0.484 Sum_probs=131.1
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
..+..+++.|++. ++|. .+..+..|+.+.+.+|.+. .+|.++..+..|.++|++.|+++ .+|..++.++ |+.|-+
T Consensus 76 dt~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 3456777778776 6666 7777788888888888886 67888888888888999888888 7777777765 888888
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|+++ .+|..++.++.|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++ .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 888888 67888888888888888888887 66778888888888888888887 566666644 4778888888888 6
Q ss_pred CChhccCCCCCCCC
Q 035658 243 IPSEIGNLKSLSNL 256 (256)
Q Consensus 243 ~p~~l~~l~~L~~L 256 (256)
+|-.|.+|+.|++|
T Consensus 226 iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVL 239 (722)
T ss_pred cchhhhhhhhheee
Confidence 77788888888764
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=3.2e-12 Score=112.05 Aligned_cols=152 Identities=37% Similarity=0.534 Sum_probs=92.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCC-CCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFP-HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 160 (256)
..++.+++.++.+. .+++ ....+. +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|......+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 35778888888877 4444 455553 8888888888887 45556778888888888888888 555555577788888
Q ss_pred EcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 161 HLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 161 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
++++|+++ .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.++++++|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 88888887 45554444445777777776422 22233344444444444444433 12333444444444444444444
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=6.2e-13 Score=108.36 Aligned_cols=132 Identities=32% Similarity=0.354 Sum_probs=108.0
Q ss_pred CCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEE
Q 035658 106 FPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185 (256)
Q Consensus 106 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 185 (256)
...|+.+++++|.|+ .+.++..-.|.++.|++++|++. .+. .+..+++|++||+|+|.++ .+..+-..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 456889999999997 56677777899999999999998 333 3888999999999999988 4455556788999999
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCcCccc-CcccccCCCCCCEEEcccCcccccC
Q 035658 186 IYNNSLSGSIPSELGNLKSLSNLALSSNKLSGS-IPQSLGNLSNLAILYIYNNSLSGLI 243 (256)
Q Consensus 186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 243 (256)
|+.|.+... ..+..+-+|..||+++|++... --..+++++.|+++.+.+|.+.+.+
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 999998743 3577888999999999998742 2356899999999999999998643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=9.7e-12 Score=109.04 Aligned_cols=156 Identities=37% Similarity=0.566 Sum_probs=131.1
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.+++++|.+. .++. .+..+++|+.|++++|++. .+|......++|+.|++++|.++ .+|........|+++.+
T Consensus 141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 7899999999987 4444 6889999999999999998 56666668999999999999999 77777667777999999
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++++++|++++|.++.. +. ++.+.+++.|++++|.+...
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCcccccc
Confidence 999654 45677888899999999999987 3366788899999999999999844 33 88899999999999998866
Q ss_pred CChh
Q 035658 243 IPSE 246 (256)
Q Consensus 243 ~p~~ 246 (256)
.|..
T Consensus 293 ~~~~ 296 (394)
T COG4886 293 LPLI 296 (394)
T ss_pred chhh
Confidence 5543
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.09 E-value=6.7e-11 Score=75.47 Aligned_cols=57 Identities=37% Similarity=0.477 Sum_probs=21.7
Q ss_pred CcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecC
Q 035658 133 LKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189 (256)
Q Consensus 133 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (256)
|++|++++|+++...+..|..+++|++|++++|+++...+..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333333333333333333333333444444433333333333333333444443333
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=6.6e-11 Score=75.51 Aligned_cols=61 Identities=34% Similarity=0.488 Sum_probs=46.9
Q ss_pred CCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCC
Q 035658 107 PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQL 167 (256)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l 167 (256)
|+|++|++++|++....++.|.++++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888887765556777888888888888888766667778888888888888764
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=4.7e-11 Score=97.56 Aligned_cols=130 Identities=27% Similarity=0.378 Sum_probs=105.7
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..++.+||++|.++ .+.. +..-.|.++.|++++|.+... +.+..+++|+.||+++|.++ .+...=..+.+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhh-hhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 35678999999987 4545 677789999999999999733 34889999999999999998 4444445788999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCccc-CCcccCCCCCCCEEEccCCcCccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGS-IPSELGNLKSLSNLALSSNKLSGS 218 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~ 218 (256)
+++|.+... +.+..+-+|..||+++|+|... -...++++|-|+++.+.+|++.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999998732 4577888999999999999742 234688999999999999999843
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.4e-10 Score=97.45 Aligned_cols=160 Identities=24% Similarity=0.201 Sum_probs=93.6
Q ss_pred CCEEEEEcCCCCCccccCC-cccCCCCCCcEEECCCCcCCCCCchh-ccCCccCcEeeccCCcCCCC-ChhhhcCCCCCC
Q 035658 82 ERVNSMNLTSIGLKGTLHD-FSFSSFPHLAYLDLQRNQLFGNIPPQ-IGNISKLKYLGLSSNLFSGA-IPPQIGHLSYLK 158 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~ 158 (256)
.+|+.|||+.|-+....+. .....+|+|+.|+++.|.+.-..... -..++.|+.|.++.|+++.. +......+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 3677777777766542111 13456777777777777764221111 12456677777777777622 122334567777
Q ss_pred EEEcccCCCCccCCccccCCCCCceEEeecCcCcccC-CcccCCCCCCCEEEccCCcCccc-Cccc-----ccCCCCCCE
Q 035658 159 TLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSI-PSELGNLKSLSNLALSSNKLSGS-IPQS-----LGNLSNLAI 231 (256)
Q Consensus 159 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~-----~~~l~~L~~ 231 (256)
.|++.+|...........-+..|++|+|++|++.... -.....++.|+.|.++.+.+... .|+. ...+++|++
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 7777777432222233344567778888887765321 12355677777777777776643 2322 244677888
Q ss_pred EEcccCcccc
Q 035658 232 LYIYNNSLSG 241 (256)
Q Consensus 232 L~l~~n~l~~ 241 (256)
|++..|++..
T Consensus 306 L~i~~N~I~~ 315 (505)
T KOG3207|consen 306 LNISENNIRD 315 (505)
T ss_pred eecccCcccc
Confidence 8888887753
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9.6e-10 Score=93.79 Aligned_cols=163 Identities=22% Similarity=0.185 Sum_probs=119.6
Q ss_pred cCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCC-CchhccCCccCcEeeccCCcCCCCChhhhcCCCC
Q 035658 78 CNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGN-IPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSY 156 (256)
Q Consensus 78 c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 156 (256)
|..-++++.|+++.|.+.-......-..+++|+.|.++.|.++.. +-.....+|+|+.|++..|............+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 334578999999999987544333345688999999999999743 3334567899999999999643344445567889
Q ss_pred CCEEEcccCCCCccCC--ccccCCCCCceEEeecCcCccc-CCcc-----cCCCCCCCEEEccCCcCccc-CcccccCCC
Q 035658 157 LKTLHLFENQLSGSIP--HSLGNLTNLVTLYIYNNSLSGS-IPSE-----LGNLKSLSNLALSSNKLSGS-IPQSLGNLS 227 (256)
Q Consensus 157 L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 227 (256)
|+.|||++|.+-. .+ ...+.++.|+.|+++.+.+... .|+. ...+++|++|++..|++... .-..+..++
T Consensus 248 L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 248 LQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE 326 (505)
T ss_pred HhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence 9999999999873 23 3467889999999999998753 2322 35678999999999998632 123345567
Q ss_pred CCCEEEcccCcccc
Q 035658 228 NLAILYIYNNSLSG 241 (256)
Q Consensus 228 ~L~~L~l~~n~l~~ 241 (256)
+|..|.+..|.++.
T Consensus 327 nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 327 NLKHLRITLNYLNK 340 (505)
T ss_pred hhhhhhcccccccc
Confidence 78888888887763
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-09 Score=88.86 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred CCEEEEEcCCCCCccccCC---cccCCCCCCcEEECCCCcCCCCCc-------------hhccCCccCcEeeccCCcCCC
Q 035658 82 ERVNSMNLTSIGLKGTLHD---FSFSSFPHLAYLDLQRNQLFGNIP-------------PQIGNISKLKYLGLSSNLFSG 145 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~-------------~~l~~l~~L~~L~L~~n~l~~ 145 (256)
++++.++||.|.+....+. ..+.++..|++|.|.+|.+...-- ...+.-++|+++....|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 3677777777776533221 034556777777777776642211 112344667777777777653
Q ss_pred C----ChhhhcCCCCCCEEEcccCCCCcc----CCccccCCCCCceEEeecCcCcc----cCCcccCCCCCCCEEEccCC
Q 035658 146 A----IPPQIGHLSYLKTLHLFENQLSGS----IPHSLGNLTNLVTLYIYNNSLSG----SIPSELGNLKSLSNLALSSN 213 (256)
Q Consensus 146 ~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n 213 (256)
. +...|...+.|+.+.+.+|.|... +...+..+++|+.|||.+|-++. .+...+..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2 223455566777777777766521 12345566777777777776653 23334556666777777777
Q ss_pred cCcccCcccc-----cCCCCCCEEEcccCccc
Q 035658 214 KLSGSIPQSL-----GNLSNLAILYIYNNSLS 240 (256)
Q Consensus 214 ~l~~~~~~~~-----~~l~~L~~L~l~~n~l~ 240 (256)
.+...-...| ...++|+.+.+.+|.|+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 6654322222 23456666666666665
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.64 E-value=2.7e-10 Score=102.61 Aligned_cols=126 Identities=33% Similarity=0.384 Sum_probs=92.6
Q ss_pred CCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCc-cccCCCCCceEEe
Q 035658 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPH-SLGNLTNLVTLYI 186 (256)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~L 186 (256)
.|...+.+.|.+. ....++.-++.|+.|+|++|+++.. ..+..+++|++||+++|.++. +|. ...++. |+.|++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence 3555566667665 4555677788899999999999854 378889999999999999884 443 233443 999999
Q ss_pred ecCcCcccCCcccCCCCCCCEEEccCCcCcccC-cccccCCCCCCEEEcccCccc
Q 035658 187 YNNSLSGSIPSELGNLKSLSNLALSSNKLSGSI-PQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 187 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 240 (256)
++|.++.. ..+.++.+|+.||+++|-+.+.- -..+..+..|..|++.||.+-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99988743 35778899999999999876421 123455677888899998874
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=9.3e-09 Score=85.57 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=102.2
Q ss_pred ccCCCCCCcEEECCCCcCCCCCch----hccCCccCcEeeccCCcCCCCCh-------------hhhcCCCCCCEEEccc
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPP----QIGNISKLKYLGLSSNLFSGAIP-------------PQIGHLSYLKTLHLFE 164 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~p-------------~~~~~l~~L~~L~ls~ 164 (256)
.+...++|++++|+.|.+....+. -+..+..|++|.|.+|++...-. ...+.-++|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 456677888999999888654443 34567888899998888762211 1234457889999999
Q ss_pred CCCCcc----CCccccCCCCCceEEeecCcCccc----CCcccCCCCCCCEEEccCCcCccc----CcccccCCCCCCEE
Q 035658 165 NQLSGS----IPHSLGNLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLALSSNKLSGS----IPQSLGNLSNLAIL 232 (256)
Q Consensus 165 n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L 232 (256)
|++... +...|...+.|+.+.+..|.|... +...+..+++|++||+.+|-++.. +...+..+++|+++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 988732 234566778899999999987532 223567899999999999988643 44556778899999
Q ss_pred EcccCccccc
Q 035658 233 YIYNNSLSGL 242 (256)
Q Consensus 233 ~l~~n~l~~~ 242 (256)
++++|.+...
T Consensus 247 ~l~dcll~~~ 256 (382)
T KOG1909|consen 247 NLGDCLLENE 256 (382)
T ss_pred cccccccccc
Confidence 9999988754
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=3e-08 Score=94.37 Aligned_cols=106 Identities=35% Similarity=0.433 Sum_probs=64.8
Q ss_pred CCCcEEECCCCc--CCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceE
Q 035658 107 PHLAYLDLQRNQ--LFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTL 184 (256)
Q Consensus 107 ~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 184 (256)
++|+.|-+..|. +.....+.|..++.|++||+++|.--+.+|..++.+-+|++|+++++.+. .+|..+.+++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666666664 33223334566666677777666555566666666666666666666666 566666666666666
Q ss_pred EeecCcCcccCCcccCCCCCCCEEEccCC
Q 035658 185 YIYNNSLSGSIPSELGNLKSLSNLALSSN 213 (256)
Q Consensus 185 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 213 (256)
++..+.....+|.....+++|++|.+..-
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66666554444555555666666666443
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.58 E-value=8.1e-08 Score=56.44 Aligned_cols=42 Identities=36% Similarity=0.794 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccceeecC
Q 035658 35 MEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCN 79 (256)
Q Consensus 35 ~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~~~~c~~~gv~c~ 79 (256)
++|++||++||+++..+ +...+.+|..+. ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~-~~~~l~~W~~~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNND-PSGVLSSWNPSS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-S-C-CCCTT--TT----S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccc-cCcccccCCCcC--CCCCeeeccEEeC
Confidence 67999999999999964 467899998321 3799999999995
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=7.8e-09 Score=91.32 Aligned_cols=104 Identities=27% Similarity=0.300 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..+..+++.+|.+.+.. . .+..+++|++|++++|.|+... .+..++.|+.|++++|.++.. ..+..++.|+.++
T Consensus 95 ~~l~~l~l~~n~i~~i~-~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIE-N-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchhhcc-c-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 35566666666665322 1 1455666666666666665332 244555566666666666532 2344466666666
Q ss_pred cccCCCCccCCcc-ccCCCCCceEEeecCcCc
Q 035658 162 LFENQLSGSIPHS-LGNLTNLVTLYIYNNSLS 192 (256)
Q Consensus 162 ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~ 192 (256)
+++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 66666653322 1 344555666666666554
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=5.7e-08 Score=92.46 Aligned_cols=127 Identities=31% Similarity=0.408 Sum_probs=80.5
Q ss_pred CEEEEEcCCCCC-ccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 83 RVNSMNLTSIGL-KGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 83 ~v~~l~L~~~~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++|-+.+|.. ...++...|..++.|++||+++|.-.+.+|..++++-+||+|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 455666666642 12333324677777888888777666677777777777888888877777 7777777777788887
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCc--ccCCcccCCCCCCCEEEc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLS--GSIPSELGNLKSLSNLAL 210 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L 210 (256)
+..+.....+|.....+++|++|.+...... ...-..+..+.+|+.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 7777655455565666777777777665421 222223344444444444
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=1.3e-08 Score=89.94 Aligned_cols=130 Identities=28% Similarity=0.341 Sum_probs=69.1
Q ss_pred cCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCc
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLV 182 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 182 (256)
+..+.+++.+++.+|.|.+. ...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.|... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 55566666666666666532 22245566666666666666543 2344555566666666666522 3344456666
Q ss_pred eEEeecCcCcccCCcc-cCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 183 TLYIYNNSLSGSIPSE-LGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 183 ~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++
T Consensus 166 ~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred cccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 66666666653322 1 34555666666666665421 22223333344455555554
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=7.7e-09 Score=75.36 Aligned_cols=103 Identities=27% Similarity=0.376 Sum_probs=55.5
Q ss_pred cEEECCCCcCCCCCchh---ccCCccCcEeeccCCcCCCCChhhh-cCCCCCCEEEcccCCCCccCCccccCCCCCceEE
Q 035658 110 AYLDLQRNQLFGNIPPQ---IGNISKLKYLGLSSNLFSGAIPPQI-GHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185 (256)
Q Consensus 110 ~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 185 (256)
..++|+.|++- -++++ +.....|..+++++|.+. .+|..| ...+.++.|++++|.+. .+|..+..++.|+.|+
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 33455555443 22332 233344555566666665 333333 23345666666666666 4555566666666666
Q ss_pred eecCcCcccCCcccCCCCCCCEEEccCCcCc
Q 035658 186 IYNNSLSGSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 186 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
++.|.+. ..|..+..+.++..|+..+|...
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 6666665 44555555666666666666554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=1.9e-08 Score=91.04 Aligned_cols=104 Identities=27% Similarity=0.250 Sum_probs=82.3
Q ss_pred cCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEcc
Q 035658 132 KLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALS 211 (256)
Q Consensus 132 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 211 (256)
.|.+.+.+.|.+. ....++.-++.+++|+|++|+++.. +.+..+++|++|||+.|.++ .+|..-..--+|..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 5777788888887 7777888889999999999999854 37888999999999999998 445322222349999999
Q ss_pred CCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 212 SNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 212 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+|.++.. ..+.++.+|+.||+++|-+.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhc
Confidence 9998733 356788999999999998875
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=3.3e-08 Score=72.12 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.++|++|.+. .+|+..-.+++.++.+++.+|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 35666777777766 344423345556777777777776 45666777777777777777776 5566666666777777
Q ss_pred cccCCCC
Q 035658 162 LFENQLS 168 (256)
Q Consensus 162 ls~n~l~ 168 (256)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 6666655
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.6e-09 Score=85.87 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=93.6
Q ss_pred CEEEEEcCCCCCccc-cCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCc-CCCC-ChhhhcCCCCCCE
Q 035658 83 RVNSMNLTSIGLKGT-LHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNL-FSGA-IPPQIGHLSYLKT 159 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~ 159 (256)
+++.+||+...++.. +.. .+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..--+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHH-HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 577888887777643 222 56677888888888888887777788888889998888763 4311 1123567888888
Q ss_pred EEcccCCCCccCCc-cccC-CCCCceEEeecCcCc---ccCCcccCCCCCCCEEEccCCc-CcccCcccccCCCCCCEEE
Q 035658 160 LHLFENQLSGSIPH-SLGN-LTNLVTLYIYNNSLS---GSIPSELGNLKSLSNLALSSNK-LSGSIPQSLGNLSNLAILY 233 (256)
Q Consensus 160 L~ls~n~l~~~~p~-~~~~-l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 233 (256)
|++++|.+....-. .+.+ -++|+.|+++++.-. ..+..-..++++|.+|||++|. ++......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 88888876532111 1111 134555666654321 1111123456667777776654 3333334455566666666
Q ss_pred cccCc
Q 035658 234 IYNNS 238 (256)
Q Consensus 234 l~~n~ 238 (256)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 66665
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=1.6e-06 Score=67.33 Aligned_cols=105 Identities=24% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccC-CccccCCCCCceEE
Q 035658 107 PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSI-PHSLGNLTNLVTLY 185 (256)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ 185 (256)
.+...++|++|.+.. -+.|..++.|.+|.+++|+|+.+-|.--..+++|..|.+.+|+|.... -.-+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 356678888888753 235778888889999999888666655566778888888888887321 12356778888888
Q ss_pred eecCcCcccC---CcccCCCCCCCEEEccCC
Q 035658 186 IYNNSLSGSI---PSELGNLKSLSNLALSSN 213 (256)
Q Consensus 186 L~~n~l~~~~---~~~l~~l~~L~~L~L~~n 213 (256)
+-+|+++..- --.+..+++|++||+..=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888876321 113556788888887653
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.4e-06 Score=51.27 Aligned_cols=35 Identities=40% Similarity=0.656 Sum_probs=13.7
Q ss_pred CcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCC
Q 035658 133 LKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLS 168 (256)
Q Consensus 133 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 168 (256)
|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=4.1e-06 Score=65.12 Aligned_cols=103 Identities=22% Similarity=0.204 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCC-hhhhcCCCCCCEEE
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAI-PPQIGHLSYLKTLH 161 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~ 161 (256)
....++|++|++... . .|..++.|..|.+.+|+|+.+.|.--.-+++|..|.+.+|.+.... -..+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l-~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-D--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc-c--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 445677777776521 1 4666777777777777777655554444667777777777765210 12345667777777
Q ss_pred cccCCCCccC---CccccCCCCCceEEeec
Q 035658 162 LFENQLSGSI---PHSLGNLTNLVTLYIYN 188 (256)
Q Consensus 162 ls~n~l~~~~---p~~~~~l~~L~~L~L~~ 188 (256)
+-+|.++..- .-.+..+|+|++||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777766321 12345677777777655
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=9e-07 Score=72.68 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=104.6
Q ss_pred CCEEEEEcCCCCCcc--ccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCC-ChhhhcCCCCCC
Q 035658 82 ERVNSMNLTSIGLKG--TLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGA-IPPQIGHLSYLK 158 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~ 158 (256)
.+|+.++|.+|.++. ++.. .+.++|.|+.|+++.|++...|...-..+.+|++|-+.+..+... ....+..+|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 478899999999885 3334 578899999999999998755443224678899999998887633 334567888889
Q ss_pred EEEcccCCCCcc-----CCccc------------------------cCCCCCceEEeecCcCccc-CCcccCCCCCCCEE
Q 035658 159 TLHLFENQLSGS-----IPHSL------------------------GNLTNLVTLYIYNNSLSGS-IPSELGNLKSLSNL 208 (256)
Q Consensus 159 ~L~ls~n~l~~~-----~p~~~------------------------~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L 208 (256)
.|.++.|.+... ..+.+ .-.|++..+.+..|.+... -.+.+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 998888844311 00000 1235555556666655432 11234455666677
Q ss_pred EccCCcCccc-CcccccCCCCCCEEEcccCcccc
Q 035658 209 ALSSNKLSGS-IPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 209 ~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+|+.|++... --+.+.++++|..|.+++|.+..
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 7777777532 22456778888888888887764
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=2.1e-06 Score=50.57 Aligned_cols=36 Identities=42% Similarity=0.682 Sum_probs=17.5
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 204 SLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 204 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33334555555555555555554
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=1.8e-06 Score=80.47 Aligned_cols=134 Identities=23% Similarity=0.282 Sum_probs=81.8
Q ss_pred CCCcEEECCCCcCCCC-Cchhc-cCCccCcEeeccCCcCCCC-ChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCce
Q 035658 107 PHLAYLDLQRNQLFGN-IPPQI-GNISKLKYLGLSSNLFSGA-IPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVT 183 (256)
Q Consensus 107 ~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 183 (256)
.+|++|++++...-.. -|..+ ..+|+|+.|.+++-.+... +.....++++|..||+|+++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3677777776543211 11222 3467788888777665422 233445677888888888877733 55677778887
Q ss_pred EEeecCcCcc-cCCcccCCCCCCCEEEccCCcCcccC------cccccCCCCCCEEEcccCccccc
Q 035658 184 LYIYNNSLSG-SIPSELGNLKSLSNLALSSNKLSGSI------PQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 184 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
|.+.+=.+.. ..-..+.++++|++||+|........ -+.-..+|.|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7777755543 22235667788888888776543211 11224477888888888777653
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.05 E-value=1.8e-05 Score=57.90 Aligned_cols=99 Identities=20% Similarity=0.262 Sum_probs=32.1
Q ss_pred hhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCC
Q 035658 150 QIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNL 229 (256)
Q Consensus 150 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 229 (256)
.|..+++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++++.+++..+ +.......|.+. .+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 3444444444444432 3322223344444455555433 222122233444555555555443 332333444444 55
Q ss_pred CEEEcccCcccccCChhccCCCCC
Q 035658 230 AILYIYNNSLSGLIPSEIGNLKSL 253 (256)
Q Consensus 230 ~~L~l~~n~l~~~~p~~l~~l~~L 253 (256)
+.+.+.. .++......|.++++|
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEE-TT-B-SS----GGG-----
T ss_pred eEEEECC-CccEECCccccccccC
Confidence 5555543 3333344445555544
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.02 E-value=2.1e-05 Score=57.57 Aligned_cols=125 Identities=16% Similarity=0.206 Sum_probs=61.3
Q ss_pred CCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCC
Q 035658 99 HDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNL 178 (256)
Q Consensus 99 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l 178 (256)
+...|.+.++|+.+.+.. .+......+|..+++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 334677777777777764 455445556777777888887765 5544455677777788888865 4443444566667
Q ss_pred CCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCC
Q 035658 179 TNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNL 229 (256)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 229 (256)
++++.+++..+ +.......|.+. +++.+.+.. .+.......|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 78888887665 443444456665 778877765 3333455566665554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.9e-05 Score=67.51 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCC-CCCcEEECCCCcCCCCCchhccCCccCcEeeccCC-cCCCCChhhhcCCCCCCE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSF-PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSN-LFSGAIPPQIGHLSYLKT 159 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~ 159 (256)
...+.|+++++.++ .+| .+ ++|+.|.++++.--..+|+.+ .++|++|++++| .+. .+|. +|+.
T Consensus 52 ~~l~~L~Is~c~L~-sLP-----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccce
Confidence 35667888877665 233 22 258888887754434556544 257888888877 444 4443 3556
Q ss_pred EEcccCCC
Q 035658 160 LHLFENQL 167 (256)
Q Consensus 160 L~ls~n~l 167 (256)
|++.++..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 66655543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=3.6e-06 Score=78.43 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=97.6
Q ss_pred CCEEEEEcCCCCCccc-cCCcccCCCCCCcEEECCCCcCCCC-CchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCE
Q 035658 82 ERVNSMNLTSIGLKGT-LHDFSFSSFPHLAYLDLQRNQLFGN-IPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKT 159 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 159 (256)
.++++|++++...... .+...-..+|.|+.|.+.+-.+... ......++|+|..||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4688888888665432 2221345589999999999877532 334557899999999999999854 77899999999
Q ss_pred EEcccCCCCc-cCCccccCCCCCceEEeecCcCcccC--C----cccCCCCCCCEEEccCCcCccc
Q 035658 160 LHLFENQLSG-SIPHSLGNLTNLVTLYIYNNSLSGSI--P----SELGNLKSLSNLALSSNKLSGS 218 (256)
Q Consensus 160 L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~ 218 (256)
|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9988877763 12235678999999999987654321 1 1223578999999998877654
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=1.1e-05 Score=65.65 Aligned_cols=140 Identities=21% Similarity=0.175 Sum_probs=82.5
Q ss_pred ccCCCCCCcEEECCCCcCCCCCch----hccCCccCcEeeccCCcCCCCChhh-------------hcCCCCCCEEEccc
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPP----QIGNISKLKYLGLSSNLFSGAIPPQ-------------IGHLSYLKTLHLFE 164 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~ls~ 164 (256)
.+.++|+|+.++|+.|.+....|+ .+++-..|.+|.+++|++...-... ..+-|.|+..+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 456677777777777777655443 3455667777777777665221111 12346677777777
Q ss_pred CCCCccCC----ccccCCCCCceEEeecCcCcccCC-----cccCCCCCCCEEEccCCcCccc----CcccccCCCCCCE
Q 035658 165 NQLSGSIP----HSLGNLTNLVTLYIYNNSLSGSIP-----SELGNLKSLSNLALSSNKLSGS----IPQSLGNLSNLAI 231 (256)
Q Consensus 165 n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 231 (256)
|++..... ..+..-..|+++.+..|.|.-..- -.+..+.+|++||+.+|.++.. ....+..++.|++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 77652111 122233567777777776652211 1234567788888888877632 2334455667788
Q ss_pred EEcccCcccc
Q 035658 232 LYIYNNSLSG 241 (256)
Q Consensus 232 L~l~~n~l~~ 241 (256)
|.+..|-++.
T Consensus 247 L~lnDClls~ 256 (388)
T COG5238 247 LRLNDCLLSN 256 (388)
T ss_pred ccccchhhcc
Confidence 8887777664
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=5.8e-06 Score=68.04 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=97.2
Q ss_pred CCCCCCcEEECCCCcCCC--CCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCc-cCCccccCCCC
Q 035658 104 SSFPHLAYLDLQRNQLFG--NIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSG-SIPHSLGNLTN 180 (256)
Q Consensus 104 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~ 180 (256)
...+.++.++|.+|.|+. .+...+.++|.|++|+++.|++...+...-..+.+|+.|-+.+..+.- .....+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 346789999999999974 355567889999999999999873322211356789999999887752 23445667888
Q ss_pred CceEEeecCcCccc----------CCc-------------------ccCCCCCCCEEEccCCcCccc-CcccccCCCCCC
Q 035658 181 LVTLYIYNNSLSGS----------IPS-------------------ELGNLKSLSNLALSSNKLSGS-IPQSLGNLSNLA 230 (256)
Q Consensus 181 L~~L~L~~n~l~~~----------~~~-------------------~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 230 (256)
+++|+++.|..... -|. ....++++..+.+..|++... ..+.+..++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 89999988844311 000 001235566666666655432 223445567777
Q ss_pred EEEcccCcccccC-ChhccCCCCCC
Q 035658 231 ILYIYNNSLSGLI-PSEIGNLKSLS 254 (256)
Q Consensus 231 ~L~l~~n~l~~~~-p~~l~~l~~L~ 254 (256)
-|+++.|+|...- -+.+.+++.|.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLV 252 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhh
Confidence 8888888886532 23455555544
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.2e-07 Score=77.69 Aligned_cols=148 Identities=20% Similarity=0.161 Sum_probs=104.5
Q ss_pred CCcEEECCCCcCCCC-CchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCC-CCcc-CCccccCCCCCceE
Q 035658 108 HLAYLDLQRNQLFGN-IPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ-LSGS-IPHSLGNLTNLVTL 184 (256)
Q Consensus 108 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~-~p~~~~~l~~L~~L 184 (256)
.|+++||+...|+.. ....+..+.+|+.|.+.++++.+.+...+..-.+|+.|+++.+. ++.. ..--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 589999999888642 33456788999999999999998888889999999999999874 4421 22345788999999
Q ss_pred EeecCcCcccCCcc-cC-CCCCCCEEEccCCcC---cccCcccccCCCCCCEEEcccCc-ccccCChhccCCCCCCC
Q 035658 185 YIYNNSLSGSIPSE-LG-NLKSLSNLALSSNKL---SGSIPQSLGNLSNLAILYIYNNS-LSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 185 ~L~~n~l~~~~~~~-l~-~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~ 255 (256)
+++.|.+....... +. --.+|+.|+++++.- ...+.....++++|.+||+++|. ++...-..|-+++.|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 99999876543222 12 235788889887642 11233344678999999999975 44333344555555554
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00012 Score=63.80 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=75.0
Q ss_pred cCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccC-CCCccCCccccCCCCC
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFEN-QLSGSIPHSLGNLTNL 181 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L 181 (256)
+..+.+++.|++++|.++ .+|. + .++|++|.++++.--..+|+.+. ++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 444688999999999887 4562 2 24699999998543336676553 58999999998 454 4554 35
Q ss_pred ceEEeecCcCc--ccCCcccCCC------------------CCCCEEEccCCcCcccCcccccCCCCCCEEEcccC
Q 035658 182 VTLYIYNNSLS--GSIPSELGNL------------------KSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNN 237 (256)
Q Consensus 182 ~~L~L~~n~l~--~~~~~~l~~l------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 237 (256)
+.|++..+... +.+|..+..+ ++|++|++++|... ..|+.+. .+|+.|+++.+
T Consensus 115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 55666554432 1333333221 36777888777654 3343332 46777777665
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.73 E-value=1.6e-05 Score=64.17 Aligned_cols=86 Identities=29% Similarity=0.344 Sum_probs=49.3
Q ss_pred cCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCC--cCCCCChhhhcCCCCCCEEEcccCCCCccCCcc---ccC
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSN--LFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHS---LGN 177 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~ 177 (256)
...+..|+.+++.+..++.. ..+..+++|++|.++.| ++.+.++.....+++|+++++++|++.. +.. +..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 34445555666666555421 23455667777777777 5554444444555777777777777662 222 234
Q ss_pred CCCCceEEeecCcCc
Q 035658 178 LTNLVTLYIYNNSLS 192 (256)
Q Consensus 178 l~~L~~L~L~~n~l~ 192 (256)
+++|..|++.+|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 455666666666554
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.70 E-value=1.7e-05 Score=64.64 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=18.5
Q ss_pred ccCCccCcEeeccCCcCCCCChhh----hcCCCCCCEEEcccCCC
Q 035658 127 IGNISKLKYLGLSSNLFSGAIPPQ----IGHLSYLKTLHLFENQL 167 (256)
Q Consensus 127 l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~ls~n~l 167 (256)
+.+||.|+..++|+|.+....|+. ++.-+.|++|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 344455555555555444333322 23344455555555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00017 Score=58.27 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=65.4
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCC--cCCCCCchhccCCccCcEeeccCCcCCCCChhh---hcCCCCC
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRN--QLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQ---IGHLSYL 157 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L 157 (256)
.++.+++.+.+++.. ..+..+++|++|.++.| ++.+.++.....+|+|+++++++|++.. ++. +..+.+|
T Consensus 44 ~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred chhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 444555555555421 14677888899999988 5555555555667899999999998863 222 3556777
Q ss_pred CEEEcccCCCCccCC---ccccCCCCCceEEeec
Q 035658 158 KTLHLFENQLSGSIP---HSLGNLTNLVTLYIYN 188 (256)
Q Consensus 158 ~~L~ls~n~l~~~~p---~~~~~l~~L~~L~L~~ 188 (256)
..|++.+|..+..-. ..|.-+++|++|+-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 888888887764211 2345567777776444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=1.4e-05 Score=65.30 Aligned_cols=102 Identities=28% Similarity=0.317 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCCh--hhhcCCC
Q 035658 78 CNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP--PQIGHLS 155 (256)
Q Consensus 78 c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~ 155 (256)
|..-..|+.|++-++++.+.- ...+|+.|++|.|+-|.|+..- .+..|++|++|+|..|.|.. +. ..+.+++
T Consensus 15 ~sdl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp 88 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLP 88 (388)
T ss_pred hhHHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCc
Confidence 333345666666666665321 3456777778888877776432 35677778888888777763 22 2356777
Q ss_pred CCCEEEcccCCCCccCCc-----cccCCCCCceEE
Q 035658 156 YLKTLHLFENQLSGSIPH-----SLGNLTNLVTLY 185 (256)
Q Consensus 156 ~L~~L~ls~n~l~~~~p~-----~~~~l~~L~~L~ 185 (256)
+|+.|.|..|...+..+. .+.-+|+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777777776654432 234456666654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=1.2e-05 Score=65.74 Aligned_cols=101 Identities=25% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccC-CccccCCCCCce
Q 035658 105 SFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSI-PHSLGNLTNLVT 183 (256)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~ 183 (256)
.+.+.+.|+.+++.++++ ....+++.|++|.|+-|+|+.. ..+..+++|++|+|..|.|.... -..+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 355677788888887643 2345678888888888888744 34567778888888887776321 123456777777
Q ss_pred EEeecCcCcccCCc-----ccCCCCCCCEEE
Q 035658 184 LYIYNNSLSGSIPS-----ELGNLKSLSNLA 209 (256)
Q Consensus 184 L~L~~n~l~~~~~~-----~l~~l~~L~~L~ 209 (256)
|.|..|.-.|.-+. .+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777765543332 234456666654
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.28 E-value=0.0016 Score=31.94 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=11.1
Q ss_pred CCEEEcccCcccccCChhccC
Q 035658 229 LAILYIYNNSLSGLIPSEIGN 249 (256)
Q Consensus 229 L~~L~l~~n~l~~~~p~~l~~ 249 (256)
|++||+++|+++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 44444443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0023 Score=31.45 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=4.1
Q ss_pred cEeeccCCcCC
Q 035658 134 KYLGLSSNLFS 144 (256)
Q Consensus 134 ~~L~L~~n~l~ 144 (256)
++||+++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.31 E-value=0.0001 Score=66.04 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCccc----cCCcccCCCCCCcEEECCCCcCC
Q 035658 84 VNSMNLTSIGLKGT----LHDFSFSSFPHLAYLDLQRNQLF 120 (256)
Q Consensus 84 v~~l~L~~~~l~~~----~~~~~~~~l~~L~~L~L~~n~l~ 120 (256)
+..+.|.+|.+... +.. .+...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~-~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ-ALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHH-HhcccccHhHhhcccCCCc
Confidence 44555555555432 111 3444555556666666554
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.21 E-value=0.00065 Score=54.37 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=64.6
Q ss_pred cCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccC
Q 035658 98 LHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGN 177 (256)
Q Consensus 98 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~ 177 (256)
+|...+..+...+.||++.|++. ..-..|..++.|..|+++.|.+. ..|..++.+..++++++..|... ..|.++..
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred cchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 33335666777778888887764 23345666677777788877776 67777777777777777777666 56777777
Q ss_pred CCCCceEEeecCcCc
Q 035658 178 LTNLVTLYIYNNSLS 192 (256)
Q Consensus 178 l~~L~~L~L~~n~l~ 192 (256)
.+.++++++..|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 777777777777655
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.86 E-value=0.035 Score=25.26 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=3.2
Q ss_pred CCEEEcccCC
Q 035658 157 LKTLHLFENQ 166 (256)
Q Consensus 157 L~~L~ls~n~ 166 (256)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3334444443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.70 E-value=0.00086 Score=53.68 Aligned_cols=86 Identities=22% Similarity=0.179 Sum_probs=71.8
Q ss_pred CCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCE
Q 035658 80 YGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKT 159 (256)
Q Consensus 80 ~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 159 (256)
...+++.||++.|++.. .-. .|+.++.+..|+++.|++. ..|..+.++..++.+++..|..+ ..|.+++..+++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHHh-hcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34689999999998762 223 5777888899999999987 57888888999999999999988 78999999999999
Q ss_pred EEcccCCCCc
Q 035658 160 LHLFENQLSG 169 (256)
Q Consensus 160 L~ls~n~l~~ 169 (256)
++.-+|.+..
T Consensus 116 ~e~k~~~~~~ 125 (326)
T KOG0473|consen 116 NEQKKTEFFR 125 (326)
T ss_pred hhhccCcchH
Confidence 9999998763
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.46 E-value=0.017 Score=51.72 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=14.9
Q ss_pred CCCCcEEECCCCcCCCC--CchhccCCccCcEeeccC
Q 035658 106 FPHLAYLDLQRNQLFGN--IPPQIGNISKLKYLGLSS 140 (256)
Q Consensus 106 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~ 140 (256)
.+.|+.+.+..+.-... .-.....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 44455555444422111 122334455555555554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.33 E-value=0.00048 Score=61.79 Aligned_cols=159 Identities=23% Similarity=0.259 Sum_probs=107.3
Q ss_pred CCEEEEEcCCCCCccc----cCCcccCCC-CCCcEEECCCCcCCCC----CchhccCCccCcEeeccCCcCCC----CCh
Q 035658 82 ERVNSMNLTSIGLKGT----LHDFSFSSF-PHLAYLDLQRNQLFGN----IPPQIGNISKLKYLGLSSNLFSG----AIP 148 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p 148 (256)
..+..+++++|.+.+. +-. .+... ..+++|++..|.++.. +.+.+.....++.++++.|.+.. .++
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~-~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCE-GLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHh-hcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 3677899999988753 111 23332 5677788888887654 55667778889999999998741 122
Q ss_pred hhh----cCCCCCCEEEcccCCCCcc----CCccccCCCC-CceEEeecCcCccc----CCcccCCC-CCCCEEEccCCc
Q 035658 149 PQI----GHLSYLKTLHLFENQLSGS----IPHSLGNLTN-LVTLYIYNNSLSGS----IPSELGNL-KSLSNLALSSNK 214 (256)
Q Consensus 149 ~~~----~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~-L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~ 214 (256)
..+ ....++++|.+++|.++.. ....+...+. +..+++..|.+.+. ....+..+ ..+++++++.|.
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC
Confidence 233 3577889999999987722 1123344455 67789999988753 22344445 677899999999
Q ss_pred Cccc----CcccccCCCCCCEEEcccCcccc
Q 035658 215 LSGS----IPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 215 l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
++.. ..+.+..++.++++.+++|.+..
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 8754 34455667789999999998874
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.78 E-value=0.1 Score=26.46 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=11.5
Q ss_pred CCCCEEEcccCcccccCChhc
Q 035658 227 SNLAILYIYNNSLSGLIPSEI 247 (256)
Q Consensus 227 ~~L~~L~l~~n~l~~~~p~~l 247 (256)
++|+.|++++|+|+...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666664444333
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.78 E-value=0.1 Score=26.46 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=11.5
Q ss_pred CCCCEEEcccCcccccCChhc
Q 035658 227 SNLAILYIYNNSLSGLIPSEI 247 (256)
Q Consensus 227 ~~L~~L~l~~n~l~~~~p~~l 247 (256)
++|+.|++++|+|+...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666664444333
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.98 E-value=0.17 Score=25.60 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=5.4
Q ss_pred cCcEeeccCCcCC
Q 035658 132 KLKYLGLSSNLFS 144 (256)
Q Consensus 132 ~L~~L~L~~n~l~ 144 (256)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.98 E-value=0.17 Score=25.60 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=5.4
Q ss_pred cCcEeeccCCcCC
Q 035658 132 KLKYLGLSSNLFS 144 (256)
Q Consensus 132 ~L~~L~L~~n~l~ 144 (256)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=0.021 Score=44.81 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=58.5
Q ss_pred CCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCccc-CCcccC-CCCCCCEEEccCCc-CcccCcccccCCCCCCE
Q 035658 155 SYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGS-IPSELG-NLKSLSNLALSSNK-LSGSIPQSLGNLSNLAI 231 (256)
Q Consensus 155 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 231 (256)
..++.+|-++..|..+--+.+..++.++.|.+.++.--+. --+-+. -.++|+.|++++|. |++.--..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4678899999888866566777888888888888753221 111111 34789999999776 66655667778888888
Q ss_pred EEcccCc
Q 035658 232 LYIYNNS 238 (256)
Q Consensus 232 L~l~~n~ 238 (256)
|.+.+=.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8776543
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.80 E-value=0.05 Score=48.64 Aligned_cols=108 Identities=21% Similarity=0.114 Sum_probs=57.7
Q ss_pred ccCCCCCCcEEECCCC-cCCCCC----chhccCCccCcEeeccCCc-CCCCChhhhc-CCCCCCEEEcccCC-CCcc-CC
Q 035658 102 SFSSFPHLAYLDLQRN-QLFGNI----PPQIGNISKLKYLGLSSNL-FSGAIPPQIG-HLSYLKTLHLFENQ-LSGS-IP 172 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~ls~n~-l~~~-~p 172 (256)
.....++|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+. .+++|++|.+.++. ++.. +-
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 4556677888887763 111111 1233446777788887777 5544333333 26778887766665 4422 12
Q ss_pred ccccCCCCCceEEeecCcCcc--cCCcccCCCCCCCEEE
Q 035658 173 HSLGNLTNLVTLYIYNNSLSG--SIPSELGNLKSLSNLA 209 (256)
Q Consensus 173 ~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~ 209 (256)
.....++.|++|+++.+.... .+.....++++++.|.
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 223456778888887765431 1222233455555544
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.50 E-value=0.05 Score=27.06 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=8.0
Q ss_pred CCCCEEEcccCccccc
Q 035658 227 SNLAILYIYNNSLSGL 242 (256)
Q Consensus 227 ~~L~~L~l~~n~l~~~ 242 (256)
++|++|++++|.|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4556666666665543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.02 E-value=0.025 Score=44.39 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=60.4
Q ss_pred CccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCcc-CCcccc-CCCCCceEEeecCc-CcccCCcccCCCCCCC
Q 035658 130 ISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGS-IPHSLG-NLTNLVTLYIYNNS-LSGSIPSELGNLKSLS 206 (256)
Q Consensus 130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~~~-~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 206 (256)
-..++.+|.++..|...--+.+.+++.++.|.+.+|.--+. .-+.++ -.++|+.|++++|. |+......+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34688999999999877667888899999999988864321 111111 34789999999874 7765555677888888
Q ss_pred EEEccC
Q 035658 207 NLALSS 212 (256)
Q Consensus 207 ~L~L~~ 212 (256)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 887764
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.95 E-value=0.23 Score=43.36 Aligned_cols=134 Identities=20% Similarity=0.122 Sum_probs=75.2
Q ss_pred CCCCCcEEECCCCcCCCC-C-chhccCCccCcEeeccCCc-CCCCChhhh-cCCCCCCEEEcccCCCC--ccCCccccCC
Q 035658 105 SFPHLAYLDLQRNQLFGN-I-PPQIGNISKLKYLGLSSNL-FSGAIPPQI-GHLSYLKTLHLFENQLS--GSIPHSLGNL 178 (256)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~-~-~~~l~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~ls~n~l~--~~~p~~~~~l 178 (256)
.+..|+++..+++.-.+. . -.-..+.++|+++.++.++ ++..-...+ .+.+.|+.+++..+... +.+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 356677777776643221 1 1122456778888887775 222111112 35667777777776543 1122223466
Q ss_pred CCCceEEeecCcCcccC-----CcccCCCCCCCEEEccCCcCc-ccCcccccCCCCCCEEEcccCc
Q 035658 179 TNLVTLYIYNNSLSGSI-----PSELGNLKSLSNLALSSNKLS-GSIPQSLGNLSNLAILYIYNNS 238 (256)
Q Consensus 179 ~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 238 (256)
+.|+.+.++++...... ...-..+..|+.+.+++++.. +..-+.+..+++|+.+++.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 77888888877543211 112234567788888877743 2233455667788887777764
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.33 E-value=1.2 Score=22.65 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=7.4
Q ss_pred CCCCEEEcccCCCC
Q 035658 155 SYLKTLHLFENQLS 168 (256)
Q Consensus 155 ~~L~~L~ls~n~l~ 168 (256)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.55 E-value=1.8 Score=22.29 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=8.4
Q ss_pred CCCCEEEcccCCCC
Q 035658 155 SYLKTLHLFENQLS 168 (256)
Q Consensus 155 ~~L~~L~ls~n~l~ 168 (256)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.64 E-value=2 Score=21.92 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=6.1
Q ss_pred cCcEeeccCCcCC
Q 035658 132 KLKYLGLSSNLFS 144 (256)
Q Consensus 132 ~L~~L~L~~n~l~ 144 (256)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444444
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=65.24 E-value=4 Score=35.99 Aligned_cols=111 Identities=19% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCCCCCcEEECCCCcC-CCCCchh-ccCCccCcEeeccCCcCCC--CChhhhcCCCCCCEEEcccCCCCcc-----CCcc
Q 035658 104 SSFPHLAYLDLQRNQL-FGNIPPQ-IGNISKLKYLGLSSNLFSG--AIPPQIGHLSYLKTLHLFENQLSGS-----IPHS 174 (256)
Q Consensus 104 ~~l~~L~~L~L~~n~l-~~~~~~~-l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~-----~p~~ 174 (256)
.+.++|+.+.+..++- +..--.. -.+.+.|+.+++..+.... .+...-.+++.|+.+.++++..... +...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 4567888888887762 2111111 1456788888888776531 1222334678888888887764311 1122
Q ss_pred ccCCCCCceEEeecCcCc-ccCCcccCCCCCCCEEEccCCc
Q 035658 175 LGNLTNLVTLYIYNNSLS-GSIPSELGNLKSLSNLALSSNK 214 (256)
Q Consensus 175 ~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~ 214 (256)
-.++..++.+.|++++.. ...-+.+..+++|+.+++-++.
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 245567888888887653 2333456677788887776654
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.39 E-value=3.9 Score=37.21 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=15.7
Q ss_pred CccCcEeeccCCcCCCC--ChhhhcCCCCCCEEEcccC
Q 035658 130 ISKLKYLGLSSNLFSGA--IPPQIGHLSYLKTLHLFEN 165 (256)
Q Consensus 130 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~ls~n 165 (256)
.+.+..+.+++|++... +..--...|+|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554421 0111122345555555555
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.03 E-value=6.3 Score=35.96 Aligned_cols=64 Identities=30% Similarity=0.331 Sum_probs=36.2
Q ss_pred CCCCCCcEEECCCCcCCCC--CchhccCCccCcEeeccCC--cCCCCChhhhc--CCCCCCEEEcccCCCCc
Q 035658 104 SSFPHLAYLDLQRNQLFGN--IPPQIGNISKLKYLGLSSN--LFSGAIPPQIG--HLSYLKTLHLFENQLSG 169 (256)
Q Consensus 104 ~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n--~l~~~~p~~~~--~l~~L~~L~ls~n~l~~ 169 (256)
.+.+.+..++|++|++... +...-...|+|..|+|++| .+.. ...+. ....|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3456777777887776532 1222234577888888887 3321 11222 22356777777777653
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.17 E-value=12 Score=18.53 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=5.1
Q ss_pred ccCcEeeccCC
Q 035658 131 SKLKYLGLSSN 141 (256)
Q Consensus 131 ~~L~~L~L~~n 141 (256)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.84 E-value=24 Score=38.71 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.1
Q ss_pred ECCCCcCCCCCchhccCCccCcEeeccCCcCC
Q 035658 113 DLQRNQLFGNIPPQIGNISKLKYLGLSSNLFS 144 (256)
Q Consensus 113 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 144 (256)
+|++|+|....+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998777778888999999999999876
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.75 E-value=23 Score=38.84 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred EcCCCCCccccCCcccCCCCCCcEEECCCCcCC
Q 035658 88 NLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLF 120 (256)
Q Consensus 88 ~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 120 (256)
||++|+|+ .++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57889988 555558999999999999999875
Done!