Query 035658
Match_columns 256
No_of_seqs 392 out of 2869
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:06:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.2E-36 1.8E-40 253.4 14.8 216 32-256 2-226 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-32 6.2E-37 257.2 14.4 216 29-255 5-251 (768)
3 4eco_A Uncharacterized protein 100.0 1.4E-32 4.8E-37 252.9 9.3 213 35-256 29-358 (636)
4 4fcg_A Uncharacterized protein 100.0 3.2E-31 1.1E-35 225.4 8.5 218 32-255 23-281 (328)
5 4ecn_A Leucine-rich repeat pro 100.0 3.9E-31 1.3E-35 249.3 9.5 211 34-255 267-599 (876)
6 2o6q_A Variable lymphocyte rec 99.9 1.7E-26 5.7E-31 191.0 17.5 173 83-256 38-210 (270)
7 3m19_A Variable lymphocyte rec 99.9 1.8E-26 6E-31 188.9 16.4 159 83-242 36-194 (251)
8 2o6q_A Variable lymphocyte rec 99.9 1.3E-25 4.3E-30 185.7 19.5 184 69-256 3-186 (270)
9 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-25 7.7E-30 185.4 18.1 172 83-255 57-229 (285)
10 3rgz_A Protein brassinosteroid 99.9 4.4E-26 1.5E-30 213.9 14.8 173 83-256 467-709 (768)
11 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-26 7.7E-31 194.2 11.2 172 82-255 76-272 (313)
12 2o6s_A Variable lymphocyte rec 99.9 2.3E-25 8E-30 177.1 14.4 177 68-252 4-190 (208)
13 1ozn_A Reticulon 4 receptor; N 99.9 5.2E-25 1.8E-29 183.2 17.2 174 82-256 32-206 (285)
14 3zyi_A Leucine-rich repeat-con 99.9 1.2E-24 4.1E-29 192.4 17.9 171 82-255 75-270 (452)
15 4fcg_A Uncharacterized protein 99.9 2.4E-25 8.4E-30 189.1 12.8 170 82-255 127-305 (328)
16 2z66_A Variable lymphocyte rec 99.9 2.9E-25 9.8E-30 186.5 12.3 187 68-255 4-227 (306)
17 3m19_A Variable lymphocyte rec 99.9 5E-24 1.7E-28 174.3 18.8 182 69-256 3-184 (251)
18 2id5_A Lingo-1, leucine rich r 99.9 3.5E-24 1.2E-28 190.5 16.8 174 82-256 32-205 (477)
19 3zyj_A Leucine-rich repeat-con 99.9 6.7E-24 2.3E-28 187.0 18.0 171 82-255 64-259 (440)
20 3rfs_A Internalin B, repeat mo 99.9 1.1E-23 3.7E-28 174.3 17.9 160 82-244 63-222 (272)
21 1p9a_G Platelet glycoprotein I 99.9 2E-23 6.8E-28 174.4 17.2 169 82-255 31-199 (290)
22 2z80_A TOLL-like receptor 2, v 99.9 1.6E-24 5.3E-29 185.7 10.7 172 82-254 52-225 (353)
23 3e6j_A Variable lymphocyte rec 99.9 4.8E-23 1.6E-27 166.3 17.5 161 66-242 14-174 (229)
24 2z66_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 176.9 13.3 173 82-256 78-253 (306)
25 3rfs_A Internalin B, repeat mo 99.9 7.7E-23 2.6E-27 169.2 18.1 170 82-256 41-210 (272)
26 2z62_A TOLL-like receptor 4, v 99.9 1.9E-23 6.4E-28 173.0 13.6 172 83-256 29-229 (276)
27 2z81_A CD282 antigen, TOLL-lik 99.9 7.8E-24 2.7E-28 191.1 11.9 158 82-240 26-185 (549)
28 2ft3_A Biglycan; proteoglycan, 99.9 5.6E-23 1.9E-27 174.6 16.5 183 68-255 30-268 (332)
29 3o6n_A APL1; leucine-rich repe 99.9 4E-23 1.4E-27 179.2 14.2 110 83-193 70-179 (390)
30 3v47_A TOLL-like receptor 5B a 99.9 9.6E-23 3.3E-27 179.9 16.7 103 152-254 296-398 (455)
31 2v9t_B SLIT homolog 2 protein 99.9 1.4E-22 4.9E-27 162.5 15.9 158 68-240 8-165 (220)
32 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4E-27 169.7 15.8 168 82-256 10-177 (290)
33 3v47_A TOLL-like receptor 5B a 99.9 6.7E-23 2.3E-27 180.9 15.1 175 82-256 103-376 (455)
34 2xwt_C Thyrotropin receptor; s 99.9 2.6E-23 8.9E-28 168.7 11.4 170 82-255 31-209 (239)
35 3oja_B Anopheles plasmodium-re 99.9 5.3E-23 1.8E-27 187.9 14.7 109 84-193 77-185 (597)
36 3zyj_A Leucine-rich repeat-con 99.9 1.2E-22 4.2E-27 178.9 16.5 172 82-256 88-284 (440)
37 3zyi_A Leucine-rich repeat-con 99.9 1.3E-22 4.4E-27 179.4 16.6 172 82-256 99-295 (452)
38 1xku_A Decorin; proteoglycan, 99.9 2.5E-22 8.6E-27 170.4 17.3 184 68-256 28-245 (330)
39 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-23 1.4E-27 188.6 13.0 166 82-248 32-202 (606)
40 1ziw_A TOLL-like receptor 3; i 99.9 7.5E-23 2.6E-27 189.3 14.5 172 82-254 25-198 (680)
41 3t6q_A CD180 antigen; protein- 99.9 3.4E-22 1.2E-26 182.5 16.4 172 82-255 376-551 (606)
42 2v70_A SLIT-2, SLIT homolog 2 99.9 6.1E-22 2.1E-26 158.8 15.2 153 86-242 15-168 (220)
43 4g8a_A TOLL-like receptor 4; l 99.9 3.6E-22 1.2E-26 182.5 15.0 165 82-247 52-221 (635)
44 3o6n_A APL1; leucine-rich repe 99.9 1.2E-21 4.1E-26 169.9 16.6 133 83-216 46-178 (390)
45 2v70_A SLIT-2, SLIT homolog 2 99.9 9.9E-22 3.4E-26 157.6 14.9 153 67-219 7-169 (220)
46 3t6q_A CD180 antigen; protein- 99.9 6.3E-22 2.2E-26 180.7 15.6 167 82-249 33-201 (606)
47 1xku_A Decorin; proteoglycan, 99.9 2.3E-21 7.8E-26 164.4 17.8 170 82-256 76-268 (330)
48 3j0a_A TOLL-like receptor 5; m 99.9 2.7E-22 9.3E-27 190.0 13.4 181 70-252 13-199 (844)
49 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-22 1.1E-26 182.6 13.2 170 83-255 377-549 (606)
50 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.7E-26 179.2 16.5 173 83-256 52-283 (597)
51 2id5_A Lingo-1, leucine rich r 99.9 7.1E-22 2.4E-26 175.6 14.9 173 82-255 56-252 (477)
52 2o6s_A Variable lymphocyte rec 99.9 5E-21 1.7E-25 151.9 17.7 156 85-244 10-165 (208)
53 4g8a_A TOLL-like receptor 4; l 99.9 4.8E-22 1.6E-26 181.6 13.4 164 87-254 36-200 (635)
54 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-21 7.3E-26 179.5 17.3 173 82-254 405-587 (680)
55 2xot_A Amphoterin-induced prot 99.9 6.9E-22 2.4E-26 169.9 13.0 172 68-240 15-202 (361)
56 1wwl_A Monocyte differentiatio 99.9 7.6E-23 2.6E-27 172.5 6.5 166 83-255 122-300 (312)
57 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-21 7.9E-26 164.6 15.5 164 82-250 78-287 (332)
58 2z63_A TOLL-like receptor 4, v 99.9 5.5E-22 1.9E-26 179.6 12.2 168 82-250 28-200 (570)
59 4eco_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 188.7 6.1 174 70-248 192-397 (636)
60 2z62_A TOLL-like receptor 4, v 99.9 9.5E-22 3.2E-26 162.7 12.6 148 107-254 28-176 (276)
61 2z80_A TOLL-like receptor 2, v 99.9 2E-22 6.8E-27 172.6 8.5 161 82-243 76-238 (353)
62 2xwt_C Thyrotropin receptor; s 99.9 5E-22 1.7E-26 161.1 9.8 168 82-253 55-231 (239)
63 1wwl_A Monocyte differentiatio 99.9 1.2E-22 4.1E-27 171.2 6.2 164 82-248 95-273 (312)
64 2z63_A TOLL-like receptor 4, v 99.9 6.5E-22 2.2E-26 179.1 10.8 172 82-255 347-522 (570)
65 2xot_A Amphoterin-induced prot 99.9 3E-21 1E-25 165.9 13.7 164 85-252 21-188 (361)
66 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-21 9.3E-26 173.5 13.7 150 104-256 321-473 (520)
67 2v9t_B SLIT homolog 2 protein 99.9 6.6E-21 2.3E-25 152.8 14.4 144 110-256 14-157 (220)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-21 1.2E-25 174.6 13.7 56 200-255 350-407 (562)
69 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.7E-21 2.3E-25 172.7 15.5 150 104-256 350-502 (562)
70 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-21 6.4E-26 175.5 11.4 172 70-255 3-176 (549)
71 1h6u_A Internalin H; cell adhe 99.8 2E-20 6.7E-25 157.5 15.8 160 82-256 63-222 (308)
72 3j0a_A TOLL-like receptor 5; m 99.8 9.3E-21 3.2E-25 179.4 15.4 109 83-191 49-160 (844)
73 4ecn_A Leucine-rich repeat pro 99.8 1.1E-21 3.8E-26 185.1 8.7 175 71-251 435-642 (876)
74 3oja_A Leucine-rich immune mol 99.8 3.1E-21 1E-25 172.2 10.1 167 82-255 58-241 (487)
75 4glp_A Monocyte differentiatio 99.8 3.1E-21 1.1E-25 162.4 9.5 167 83-255 92-298 (310)
76 1h6t_A Internalin B; cell adhe 99.8 4.2E-20 1.4E-24 154.2 15.9 148 82-242 68-215 (291)
77 4ezg_A Putative uncharacterize 99.8 9.1E-21 3.1E-25 149.3 11.0 151 82-241 44-195 (197)
78 3e6j_A Variable lymphocyte rec 99.8 4.7E-20 1.6E-24 148.7 15.2 144 109-256 21-164 (229)
79 1h6u_A Internalin H; cell adhe 99.8 5.4E-20 1.8E-24 154.8 15.5 160 82-256 41-200 (308)
80 2z7x_B TOLL-like receptor 1, v 99.8 4.6E-20 1.6E-24 165.5 15.5 160 80-243 322-484 (520)
81 3o53_A Protein LRIM1, AGAP0063 99.8 3.5E-21 1.2E-25 162.6 7.1 167 82-255 58-241 (317)
82 4b8c_D Glucose-repressible alc 99.8 2.8E-21 9.7E-26 180.0 6.0 209 33-250 129-364 (727)
83 4glp_A Monocyte differentiatio 99.8 5.9E-21 2E-25 160.7 7.1 154 81-241 144-308 (310)
84 3o53_A Protein LRIM1, AGAP0063 99.8 6.8E-21 2.3E-25 160.9 6.8 165 82-254 99-265 (317)
85 4ezg_A Putative uncharacterize 99.8 5E-20 1.7E-24 145.1 11.0 147 102-256 39-186 (197)
86 1w8a_A SLIT protein; signaling 99.8 1.6E-19 5.5E-24 141.7 13.5 132 85-220 11-143 (192)
87 4fmz_A Internalin; leucine ric 99.8 1.3E-19 4.5E-24 154.4 13.9 161 83-256 178-338 (347)
88 3oja_A Leucine-rich immune mol 99.8 1.2E-20 4.2E-25 168.3 7.8 163 83-253 100-264 (487)
89 2ell_A Acidic leucine-rich nuc 99.8 6.9E-20 2.4E-24 140.5 10.8 136 105-242 22-162 (168)
90 1h6t_A Internalin B; cell adhe 99.8 2.6E-19 9E-24 149.4 14.2 160 82-256 46-205 (291)
91 2ast_B S-phase kinase-associat 99.8 4.2E-21 1.4E-25 162.9 3.1 174 82-256 93-277 (336)
92 4ay9_X Follicle-stimulating ho 99.8 6.3E-20 2.2E-24 157.0 9.9 185 69-255 7-230 (350)
93 1m9s_A Internalin B; cell inva 99.8 2.8E-19 9.6E-24 163.1 14.4 154 82-248 65-218 (605)
94 2ast_B S-phase kinase-associat 99.8 4.4E-21 1.5E-25 162.8 2.0 173 82-256 70-252 (336)
95 1w8a_A SLIT protein; signaling 99.8 4.7E-19 1.6E-23 139.0 13.4 126 69-194 6-141 (192)
96 1o6v_A Internalin A; bacterial 99.8 5.3E-19 1.8E-23 156.8 15.2 158 83-255 222-379 (466)
97 1xeu_A Internalin C; cellular 99.8 5.9E-19 2E-23 145.2 13.1 148 82-243 41-188 (263)
98 4fmz_A Internalin; leucine ric 99.8 8.4E-19 2.9E-23 149.4 14.4 144 103-256 173-316 (347)
99 2je0_A Acidic leucine-rich nuc 99.8 1.2E-19 4.3E-24 136.3 7.4 127 107-235 17-148 (149)
100 1m9s_A Internalin B; cell inva 99.8 1.3E-18 4.4E-23 158.8 15.5 160 82-256 43-202 (605)
101 1xeu_A Internalin C; cellular 99.8 6.8E-19 2.3E-23 144.8 11.7 158 83-256 20-177 (263)
102 2o6r_A Variable lymphocyte rec 99.8 2.8E-18 9.4E-23 132.7 14.5 138 68-220 4-141 (177)
103 2ell_A Acidic leucine-rich nuc 99.8 5.1E-19 1.8E-23 135.6 10.2 136 82-221 24-164 (168)
104 2wfh_A SLIT homolog 2 protein 99.8 2.5E-18 8.6E-23 135.0 14.3 127 86-217 14-140 (193)
105 1o6v_A Internalin A; bacterial 99.8 1.9E-18 6.5E-23 153.2 15.1 158 83-255 200-357 (466)
106 2o6r_A Variable lymphocyte rec 99.8 4.1E-18 1.4E-22 131.7 14.4 133 109-244 9-141 (177)
107 3cvr_A Invasion plasmid antige 99.8 1.1E-18 3.7E-23 157.9 12.2 160 72-255 49-234 (571)
108 3cvr_A Invasion plasmid antige 99.8 4.7E-18 1.6E-22 153.8 16.0 148 82-251 100-254 (571)
109 3bz5_A Internalin-J, INLJ; leu 99.8 1E-17 3.4E-22 148.3 17.7 65 177-247 189-253 (457)
110 3bz5_A Internalin-J, INLJ; leu 99.8 1.7E-17 5.9E-22 146.8 19.0 164 71-255 74-237 (457)
111 2je0_A Acidic leucine-rich nuc 99.8 9.6E-19 3.3E-23 131.4 8.5 128 82-212 17-149 (149)
112 2wfh_A SLIT homolog 2 protein 99.8 7.7E-18 2.6E-22 132.2 13.7 126 111-240 14-139 (193)
113 2ca6_A RAN GTPase-activating p 99.8 2.4E-20 8.2E-25 161.5 -1.5 173 82-255 94-307 (386)
114 4b8c_D Glucose-repressible alc 99.8 2.1E-19 7.3E-24 167.4 4.2 145 82-237 224-369 (727)
115 2ca6_A RAN GTPase-activating p 99.8 9.1E-20 3.1E-24 157.8 1.1 175 82-256 60-279 (386)
116 1dce_A Protein (RAB geranylger 99.7 2.2E-20 7.7E-25 169.3 -4.9 167 83-256 350-565 (567)
117 3goz_A Leucine-rich repeat-con 99.7 4.8E-19 1.6E-23 152.2 2.5 173 82-255 22-229 (362)
118 3goz_A Leucine-rich repeat-con 99.7 3.9E-19 1.3E-23 152.7 0.8 173 83-256 52-258 (362)
119 1a9n_A U2A', U2A'; complex (nu 99.7 8.4E-18 2.9E-22 129.9 7.6 133 102-240 14-153 (176)
120 1jl5_A Outer protein YOPM; leu 99.7 5.3E-18 1.8E-22 150.0 6.4 125 110-254 74-198 (454)
121 1jl5_A Outer protein YOPM; leu 99.7 5.9E-16 2E-20 136.8 16.6 141 82-241 111-251 (454)
122 1ds9_A Outer arm dynein; leuci 99.7 4.7E-20 1.6E-24 145.3 -9.2 151 83-240 19-185 (198)
123 1a9n_A U2A', U2A'; complex (nu 99.7 1.3E-16 4.4E-21 123.2 8.9 127 126-256 14-145 (176)
124 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-18 4.7E-23 153.4 -4.2 39 202-240 369-411 (461)
125 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-15 8.3E-20 137.5 17.0 68 179-255 221-288 (622)
126 3g06_A SSPH2 (leucine-rich rep 99.7 6.6E-16 2.3E-20 141.2 13.1 110 131-250 181-307 (622)
127 3g39_A Variable lymphocyte rec 99.7 1.1E-15 3.8E-20 117.4 11.9 109 108-219 10-118 (170)
128 1ds9_A Outer arm dynein; leuci 99.6 1.9E-19 6.6E-24 141.8 -9.7 149 103-256 14-179 (198)
129 3g39_A Variable lymphocyte rec 99.6 1.8E-15 6E-20 116.3 12.6 106 85-194 12-117 (170)
130 3sb4_A Hypothetical leucine ri 99.6 4E-16 1.4E-20 132.2 9.8 101 154-256 225-326 (329)
131 1dce_A Protein (RAB geranylger 99.6 6.9E-16 2.4E-20 139.8 11.7 122 108-234 442-567 (567)
132 1z7x_W Ribonuclease inhibitor; 99.6 9.4E-18 3.2E-22 148.1 -0.7 158 83-241 86-270 (461)
133 4ay9_X Follicle-stimulating ho 99.6 7.1E-16 2.4E-20 131.8 9.7 167 85-256 12-207 (350)
134 2r9u_A Variable lymphocyte rec 99.6 2.8E-15 9.4E-20 115.6 11.8 106 110-218 15-120 (174)
135 2r9u_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 114.2 12.6 106 85-194 15-120 (174)
136 3un9_A NLR family member X1; l 99.5 2.4E-16 8.1E-21 135.9 -4.8 168 82-249 72-261 (372)
137 2ifg_A High affinity nerve gro 99.5 1.5E-13 5.2E-18 116.9 10.7 106 110-218 11-118 (347)
138 2ifg_A High affinity nerve gro 99.5 2E-13 7E-18 116.1 11.2 109 70-193 7-117 (347)
139 3sb4_A Hypothetical leucine ri 99.4 8.7E-13 3E-17 111.6 11.3 103 130-234 225-328 (329)
140 3ogk_B Coronatine-insensitive 99.4 5.8E-14 2E-18 127.5 1.2 149 105-255 162-322 (592)
141 3ogk_B Coronatine-insensitive 99.4 7.2E-14 2.5E-18 126.9 1.5 81 82-164 164-252 (592)
142 3un9_A NLR family member X1; l 99.3 2E-14 6.8E-19 123.8 -4.6 150 106-255 71-243 (372)
143 4fdw_A Leucine rich hypothetic 99.2 9.9E-11 3.4E-15 101.7 13.7 166 83-255 158-349 (401)
144 4fdw_A Leucine rich hypothetic 99.2 1.2E-10 4.1E-15 101.2 14.2 164 82-251 180-369 (401)
145 2p1m_B Transport inhibitor res 99.2 6.4E-13 2.2E-17 120.6 -1.3 107 82-189 105-221 (594)
146 2p1m_B Transport inhibitor res 99.2 3.9E-13 1.3E-17 122.0 -5.5 172 82-255 289-510 (594)
147 3rw6_A Nuclear RNA export fact 99.0 9E-13 3.1E-17 107.9 -8.3 104 127-233 137-257 (267)
148 2ra8_A Uncharacterized protein 99.0 1.4E-10 4.9E-15 99.2 2.4 137 102-241 167-321 (362)
149 2ra8_A Uncharacterized protein 99.0 2.1E-10 7.3E-15 98.1 3.4 136 103-241 135-293 (362)
150 1io0_A Tropomodulin; LRR prote 98.9 2.2E-10 7.5E-15 88.9 1.2 89 152-240 62-164 (185)
151 1io0_A Tropomodulin; LRR prote 98.9 3.5E-10 1.2E-14 87.7 1.0 115 102-216 31-164 (185)
152 3rw6_A Nuclear RNA export fact 98.7 7.2E-10 2.5E-14 90.6 -2.1 80 128-209 167-257 (267)
153 3e4g_A ATP synthase subunit S, 98.4 8.1E-08 2.8E-12 73.3 2.5 34 108-141 62-95 (176)
154 4h09_A Hypothetical leucine ri 98.4 3.7E-06 1.3E-10 71.9 12.9 145 102-251 212-356 (379)
155 3e4g_A ATP synthase subunit S, 98.4 9.8E-08 3.4E-12 72.8 2.1 85 130-214 60-150 (176)
156 4fs7_A Uncharacterized protein 98.3 2.7E-06 9.3E-11 73.3 10.4 145 102-255 248-392 (394)
157 4gt6_A Cell surface protein; l 98.3 5.2E-06 1.8E-10 71.5 10.6 111 124-238 258-368 (394)
158 4fs7_A Uncharacterized protein 98.2 5.6E-06 1.9E-10 71.3 9.7 132 102-237 66-218 (394)
159 4h09_A Hypothetical leucine ri 98.2 2.7E-05 9.1E-10 66.6 13.9 127 126-256 212-338 (379)
160 4gt6_A Cell surface protein; l 98.2 8.7E-06 3E-10 70.1 10.4 130 102-238 260-389 (394)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 4.6E-06 1.6E-10 64.8 2.5 90 150-239 65-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 9.9E-06 3.4E-10 62.8 2.5 114 102-215 36-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00085 2.9E-08 48.4 6.6 37 108-144 32-68 (130)
164 3rfe_A Platelet glycoprotein I 97.2 0.00082 2.8E-08 48.4 6.0 56 135-192 12-68 (130)
165 2lz0_A Uncharacterized protein 75.0 10 0.00036 25.2 6.3 13 126-138 15-27 (100)
166 2lz0_A Uncharacterized protein 69.1 18 0.00062 24.0 6.4 45 143-188 8-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.2e-36 Score=253.39 Aligned_cols=216 Identities=33% Similarity=0.607 Sum_probs=194.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCc--cceeecCCC---CCEEEEEcCCCCCcc--ccCCcccC
Q 035658 32 SYSMEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCA--WVGIHCNYG---ERVNSMNLTSIGLKG--TLHDFSFS 104 (256)
Q Consensus 32 ~~~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~~~~c~--~~gv~c~~~---~~v~~l~L~~~~l~~--~~~~~~~~ 104 (256)
.|.++|+.||++||+++.++ . .+++|. .+.++|. |.||.|+.. ++|+.|+++++++.| .+|. .+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~--~-~l~~W~----~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP--T-TLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC--G-GGTTCC----TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGG
T ss_pred CCCHHHHHHHHHHHHhcCCc--c-cccCCC----CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHh
Confidence 47889999999999999763 3 688997 3567888 999999854 799999999999998 8888 999
Q ss_pred CCCCCcEEECCC-CcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCce
Q 035658 105 SFPHLAYLDLQR-NQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVT 183 (256)
Q Consensus 105 ~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 183 (256)
++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 999999999995 9999999999999999999999999999899999999999999999999999889999999999999
Q ss_pred EEeecCcCcccCCcccCCCC-CCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 184 LYIYNNSLSGSIPSELGNLK-SLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 184 L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..++++++|+.|
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 99999999989999999988 899999999999888888888876 8888888888888888888888887753
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=1.8e-32 Score=257.17 Aligned_cols=216 Identities=30% Similarity=0.403 Sum_probs=161.4
Q ss_pred hccCCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccceeecCCCCCEEEEEcCCCCCccc---cCC-----
Q 035658 29 IVSSYSMEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCNYGERVNSMNLTSIGLKGT---LHD----- 100 (256)
Q Consensus 29 ~~~~~~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~~~~c~~~gv~c~~~~~v~~l~L~~~~l~~~---~~~----- 100 (256)
+++++.++|+.||++||+++.+ +. .+++|. .+.+||.|.||.|+ .++|+.|+++++++.|. +++
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~--~~-~l~~W~----~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPD--KN-LLPDWS----SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSL 76 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSC--TT-SSTTCC----TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred ccccCCHHHHHHHHHHHhhCCC--cc-cccCCC----CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhcc
Confidence 3344467899999999999986 44 789997 46789999999998 68999999999999886 432
Q ss_pred -----------------cccCCCCCCcEEECCCCcCCCCCch--hccCCccCcEeeccCCcCCCCChhhh-cCCCCCCEE
Q 035658 101 -----------------FSFSSFPHLAYLDLQRNQLFGNIPP--QIGNISKLKYLGLSSNLFSGAIPPQI-GHLSYLKTL 160 (256)
Q Consensus 101 -----------------~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L 160 (256)
..+.++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 2677888888888888888887777 78888888888888888887777655 677888888
Q ss_pred EcccCCCCccCCcc---ccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccC
Q 035658 161 HLFENQLSGSIPHS---LGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNN 237 (256)
Q Consensus 161 ~ls~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 237 (256)
++++|++++..|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+++.+|. ++++++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 88888887666555 5666666666666666665443 25666677777777766665555 666677777777777
Q ss_pred cccccCChhccCCCCCCC
Q 035658 238 SLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 238 ~l~~~~p~~l~~l~~L~~ 255 (256)
.+++.+|..++++++|++
T Consensus 234 ~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKL 251 (768)
T ss_dssp CCCSCHHHHTTTCSSCCE
T ss_pred cCCCcccHHHhcCCCCCE
Confidence 776666666666666654
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.4e-32 Score=252.94 Aligned_cols=213 Identities=21% Similarity=0.340 Sum_probs=186.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCCC-------CCCCCCCCCCCCCCCcc---ceeecCCCCCEEEEEcCCCCCccccCCcccC
Q 035658 35 MEETRALLRWKTSLQNHNNGSP-------LSSWTLNNVTKIGSCAW---VGIHCNYGERVNSMNLTSIGLKGTLHDFSFS 104 (256)
Q Consensus 35 ~~~~~~l~~~k~~~~~~~~~~~-------~~~w~~~~~~~~~~c~~---~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~ 104 (256)
..|+.||.++|.++.++ +|.. ..+|. .+.++|.| .||.|+..++|+.|+|+++++.|.+|+ .+.
T Consensus 29 ~~d~~aL~~~~~~~~~~-~w~~~~~~~~~~~~W~----~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~ 102 (636)
T 4eco_A 29 IKDYLALKEIWDALNGK-NWSQQGFGTQPGANWN----FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIG 102 (636)
T ss_dssp HHHHHHHHHHHHHTTGG-GCCCCC------CCCC----CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGG
T ss_pred HHHHHHHHHHHHHcCCC-CcccCCcCCccCCCCC----CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHh
Confidence 47999999999998874 3332 33798 46789999 999998878999999999999999998 999
Q ss_pred CCCCCcEEECCCCcC-----------------------------------------------------------------
Q 035658 105 SFPHLAYLDLQRNQL----------------------------------------------------------------- 119 (256)
Q Consensus 105 ~l~~L~~L~L~~n~l----------------------------------------------------------------- 119 (256)
++++|++|++++|.+
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 999999999998843
Q ss_pred -------------CCCCchhccCCccCcEeeccCCcCCCC-----------------Chhhhc--CCCCCCEEEcccCCC
Q 035658 120 -------------FGNIPPQIGNISKLKYLGLSSNLFSGA-----------------IPPQIG--HLSYLKTLHLFENQL 167 (256)
Q Consensus 120 -------------~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~ls~n~l 167 (256)
++ +|+.++++++|++|++++|.+++. +|..++ ++++|++|++++|.+
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 34 788899999999999999999975 899988 999999999999999
Q ss_pred CccCCccccCCCCCceEEeecCc-Ccc-cCCcccCCC------CCCCEEEccCCcCcccCcc--cccCCCCCCEEEcccC
Q 035658 168 SGSIPHSLGNLTNLVTLYIYNNS-LSG-SIPSELGNL------KSLSNLALSSNKLSGSIPQ--SLGNLSNLAILYIYNN 237 (256)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n 237 (256)
.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .++++++|++|++++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 99999999999999999999998 988 788877765 89999999999998 7787 8889999999999999
Q ss_pred cccccCChhccCCCCCCCC
Q 035658 238 SLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 238 ~l~~~~p~~l~~l~~L~~L 256 (256)
.++|.+| .++.+++|++|
T Consensus 341 ~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp CCEEECC-CCEEEEEESEE
T ss_pred cCccchh-hhCCCCCCCEE
Confidence 9988888 77777776643
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.2e-31 Score=225.44 Aligned_cols=218 Identities=21% Similarity=0.291 Sum_probs=142.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccceeecC---------CCCCEEEEEcCCCCCccccCCcc
Q 035658 32 SYSMEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCN---------YGERVNSMNLTSIGLKGTLHDFS 102 (256)
Q Consensus 32 ~~~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~~~~c~~~gv~c~---------~~~~v~~l~L~~~~l~~~~~~~~ 102 (256)
++..+|+.||++||..+..+ +......|........++|.|.|+.|. ...+|+.|++++|++. .+|. .
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~-~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~-~ 99 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNAD-RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD-Q 99 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHC-CTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-C
T ss_pred ccCchHHHHHHHHHHhccCC-chhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-h
Confidence 34568999999999988543 334467783222246788999999995 2367888999988887 6666 6
Q ss_pred cCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccC-----
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGN----- 177 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~----- 177 (256)
+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 777888888888888887 67777788888888888888877 66777777777777777776665555554432
Q ss_pred ----CCCCceEEeecCcCcccCCcccC-----------------------CCCCCCEEEccCCcCcccCcccccCCCCCC
Q 035658 178 ----LTNLVTLYIYNNSLSGSIPSELG-----------------------NLKSLSNLALSSNKLSGSIPQSLGNLSNLA 230 (256)
Q Consensus 178 ----l~~L~~L~L~~n~l~~~~~~~l~-----------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 230 (256)
+++|++|++++|.++ .+|..+. .+++|++|++++|.+.+.+|..++.+++|+
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 555555555555554 4444444 445555555555554445555555555555
Q ss_pred EEEcccCcccccCChhccCCCCCCC
Q 035658 231 ILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 231 ~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+|++++|.+.+.+|..++++++|++
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred EEECCCCCchhhcchhhhcCCCCCE
Confidence 5555555555555555555555543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.9e-31 Score=249.31 Aligned_cols=211 Identities=20% Similarity=0.352 Sum_probs=174.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCCCCCCCC---CCCCCCCcc------------ceeecCCCCCEEEEEcCCCCCcccc
Q 035658 34 SMEETRALLRWKTSLQNHNNGSPLSSWTLNN---VTKIGSCAW------------VGIHCNYGERVNSMNLTSIGLKGTL 98 (256)
Q Consensus 34 ~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~---~~~~~~c~~------------~gv~c~~~~~v~~l~L~~~~l~~~~ 98 (256)
..+|+.||++||+++.++ +|.... ....++|.| .||.|+..++|+.|+|+++++.|.+
T Consensus 267 ~~~d~~ALl~~k~~l~~~-------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred chHHHHHHHHHHHHcCCC-------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 457999999999999762 665322 122334999 9999998889999999999999999
Q ss_pred CCcccCCCCCCcEEEC-CCCcCCCC-------------------------------------------------------
Q 035658 99 HDFSFSSFPHLAYLDL-QRNQLFGN------------------------------------------------------- 122 (256)
Q Consensus 99 ~~~~~~~l~~L~~L~L-~~n~l~~~------------------------------------------------------- 122 (256)
|+ .++++++|++|+| ++|.+.|.
T Consensus 340 p~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 340 PD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp CG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred ch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 98 9999999999999 77754332
Q ss_pred ---------------------CchhccCCccCcEeeccCCcCCC-----------------CChhhhc--CCCCCCEEEc
Q 035658 123 ---------------------IPPQIGNISKLKYLGLSSNLFSG-----------------AIPPQIG--HLSYLKTLHL 162 (256)
Q Consensus 123 ---------------------~~~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~l 162 (256)
+|..++++++|++|++++|.+++ .+|..++ ++++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78889999999999999999997 3888877 9999999999
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCc-Ccc-cCCcccCC-------CCCCCEEEccCCcCcccCcc--cccCCCCCCE
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNS-LSG-SIPSELGN-------LKSLSNLALSSNKLSGSIPQ--SLGNLSNLAI 231 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~-------l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~ 231 (256)
++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+.. +++|++|++++|.++ .+|. .++++++|++
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 9999999999999999999999999998 887 67765444 348888888888888 6777 7888888888
Q ss_pred EEcccCcccccCChhccCCCCCCC
Q 035658 232 LYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 232 L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
|++++|.++ .+| .|+++++|+.
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESE
T ss_pred EECCCCCcc-cch-hhcCCCcceE
Confidence 888888887 566 6777776664
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-26 Score=191.01 Aligned_cols=173 Identities=24% Similarity=0.258 Sum_probs=150.3
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
.++.|++++|++.+..+. .|.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 578888888888854444 7899999999999999998666667788999999999999999777778889999999999
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99999987777888999999999999999977666788999999999999999977777889999999999999999987
Q ss_pred CChhccCCCCCCCC
Q 035658 243 IPSEIGNLKSLSNL 256 (256)
Q Consensus 243 ~p~~l~~l~~L~~L 256 (256)
.+..+..+++|+.|
T Consensus 197 ~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 197 PEGAFDSLEKLKML 210 (270)
T ss_dssp CTTTTTTCTTCCEE
T ss_pred CHHHhccccCCCEE
Confidence 77778888888753
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=1.8e-26 Score=188.86 Aligned_cols=159 Identities=25% Similarity=0.341 Sum_probs=105.5
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
.++.|++++|++.+..+. .+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 466677777766654444 6666777777777777776666666666777777777777776555566666677777777
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77776655555566666777777777776655555566667777777777776655555666666777777777766644
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-25 Score=185.70 Aligned_cols=184 Identities=26% Similarity=0.315 Sum_probs=150.9
Q ss_pred CCCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCCh
Q 035658 69 GSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP 148 (256)
Q Consensus 69 ~~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 148 (256)
+.|.|.|+.|......+.+++++++++ .+|. .+. +++++|++++|++.+..+..|.++++|++|++++|.++...+
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCS-SCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCC-ccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 578898888876667778889888887 4554 332 578889999999887666788889999999999999886666
Q ss_pred hhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCC
Q 035658 149 PQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSN 228 (256)
Q Consensus 149 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 228 (256)
..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 66788899999999999988766677788889999999999988777777888899999999999888766677888889
Q ss_pred CCEEEcccCcccccCChhccCCCCCCCC
Q 035658 229 LAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 229 L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
|++|++++|.+++..+..|.++++|++|
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEE
Confidence 9999999999888777778888887753
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.3e-25 Score=185.41 Aligned_cols=172 Identities=26% Similarity=0.336 Sum_probs=104.9
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCc-CCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQ-LFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
+++.|++++|.+.+..+. .+..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 57 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 455566665555544344 55566666666666665 5444455566666666666666666655555566666666666
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 66666665444455666666666666666665444456666666666666666666656666666666666666666666
Q ss_pred cCChhccCCCCCCC
Q 035658 242 LIPSEIGNLKSLSN 255 (256)
Q Consensus 242 ~~p~~l~~l~~L~~ 255 (256)
..+..+..+++|++
T Consensus 216 ~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 216 LPTEALAPLRALQY 229 (285)
T ss_dssp CCHHHHTTCTTCCE
T ss_pred CCHHHcccCcccCE
Confidence 55555666666654
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=4.4e-26 Score=213.85 Aligned_cols=173 Identities=36% Similarity=0.579 Sum_probs=118.9
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
.++.+++++|.+.+.+|. .+.++++|++|++++|++.+.+|..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 467 ~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CceEEEecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 455666666666655555 5666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCCCCccCCccc-------------------------------------------------------------------
Q 035658 163 FENQLSGSIPHSL------------------------------------------------------------------- 175 (256)
Q Consensus 163 s~n~l~~~~p~~~------------------------------------------------------------------- 175 (256)
++|.+++.+|..+
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 6666655444322
Q ss_pred ---cCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCC
Q 035658 176 ---GNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKS 252 (256)
Q Consensus 176 ---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 252 (256)
..+++|++|++++|+++|.+|..++.+++|++|++++|.++|.+|..++++++|+.||+++|+++|.+|..++++++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 22455677777777777777777777777777777777777777777777777888888888887777777777777
Q ss_pred CCCC
Q 035658 253 LSNL 256 (256)
Q Consensus 253 L~~L 256 (256)
|++|
T Consensus 706 L~~L 709 (768)
T 3rgz_A 706 LTEI 709 (768)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 7653
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.3e-26 Score=194.24 Aligned_cols=172 Identities=28% Similarity=0.445 Sum_probs=108.0
Q ss_pred CCEEEEEcCC-CCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTS-IGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~-~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 160 (256)
.+++.|++++ |.+.+.+|. .+.++++|++|++++|++++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 3567777774 667666666 66667777777777777666666666666666666666666666666666666666666
Q ss_pred EcccCCCCccCCccccCCC-CCceEEeecCcCccc-----------------------CCcccCCCCCCCEEEccCCcCc
Q 035658 161 HLFENQLSGSIPHSLGNLT-NLVTLYIYNNSLSGS-----------------------IPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 161 ~ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~-----------------------~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
++++|++++.+|..+..++ +|++|++++|.+++. .|..+..+++|++|++++|.++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 6666666656666665555 556665555555544 4444445555555555555555
Q ss_pred ccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 217 GSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+.+|. +..+++|++|++++|.+++.+|..+.++++|++
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 43333 455566666666666666666666666666654
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.3e-25 Score=177.06 Aligned_cols=177 Identities=24% Similarity=0.303 Sum_probs=153.2
Q ss_pred CCCCccceeecCCC----------CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEee
Q 035658 68 IGSCAWVGIHCNYG----------ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLG 137 (256)
Q Consensus 68 ~~~c~~~gv~c~~~----------~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 137 (256)
.+.|.|.++.|... .+++.|++++|++++..+. .+..+++|++|++++|++++..+..|..+++|++|+
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 45689999999742 3689999999999854444 789999999999999999977677789999999999
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcc
Q 035658 138 LSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSG 217 (256)
Q Consensus 138 L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 217 (256)
+++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 99999997777778999999999999999997777778899999999999999997777678899999999999998763
Q ss_pred cCcccccCCCCCCEEEcccCcccccCChhccCCCC
Q 035658 218 SIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKS 252 (256)
Q Consensus 218 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 252 (256)
.+++|++|+++.|.++|.+|+.++.++.
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4567899999999999999988887764
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.2e-25 Score=183.24 Aligned_cols=174 Identities=24% Similarity=0.279 Sum_probs=156.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCc-CCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNL-FSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L 160 (256)
.+++.|++++|.+++..+. .|..+++|++|++++|.+++..|..+.++++|++|++++|. ++...|..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4789999999999865555 89999999999999999998778899999999999999997 886668889999999999
Q ss_pred EcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 161 HLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 161 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999877888999999999999999999777777889999999999999999777777999999999999999999
Q ss_pred ccCChhccCCCCCCCC
Q 035658 241 GLIPSEIGNLKSLSNL 256 (256)
Q Consensus 241 ~~~p~~l~~l~~L~~L 256 (256)
+..|..|.++++|+.|
T Consensus 191 ~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTL 206 (285)
T ss_dssp EECTTTTTTCTTCCEE
T ss_pred ccCHhHccCcccccEe
Confidence 9889999999888764
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.2e-24 Score=192.39 Aligned_cols=171 Identities=23% Similarity=0.285 Sum_probs=127.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|++.+..+. .|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4789999999999876666 899999999999999999887788899999999999999999877777788899999999
Q ss_pred cccCCCCccCCccccCCCC-------------------------CceEEeecCcCcccCCcccCCCCCCCEEEccCCcCc
Q 035658 162 LFENQLSGSIPHSLGNLTN-------------------------LVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~-------------------------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
+++|+++...+..|..+++ |++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 9999887554444444444 5555555555542 22 3555566666666666666
Q ss_pred ccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 217 GSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+..|..|.++++|++|++++|.+++..+..|.++++|+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 666666777777777777777777666666776666664
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.4e-25 Score=189.11 Aligned_cols=170 Identities=21% Similarity=0.281 Sum_probs=142.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccC---------CccCcEeeccCCcCCCCChhhhc
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGN---------ISKLKYLGLSSNLFSGAIPPQIG 152 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~ 152 (256)
.+++.|++++|.+. .+|. .+.++++|++|++++|++.+.+|..+.. +++|++|++++|.++ .+|..+.
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~ 203 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203 (328)
T ss_dssp TTCSEEEEESCCCC-CCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG
T ss_pred CCCCEEECCCCccc-cCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc
Confidence 35666666666666 5555 5666777777777776666666665543 777777777777777 6777888
Q ss_pred CCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q 035658 153 HLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAIL 232 (256)
Q Consensus 153 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 232 (256)
.+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 204 ~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp GCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 89999999999999984 66778899999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcccccCChhccCCCCCCC
Q 035658 233 YIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 233 ~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
++++|.+.+.+|+.++++++|+.
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCE
T ss_pred eCCCCCchhhccHHHhhccCceE
Confidence 99999999999999999999875
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=2.9e-25 Score=186.53 Aligned_cols=187 Identities=22% Similarity=0.247 Sum_probs=123.1
Q ss_pred CCCCccceeecCCC----------CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCC--Cchhc--------
Q 035658 68 IGSCAWVGIHCNYG----------ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGN--IPPQI-------- 127 (256)
Q Consensus 68 ~~~c~~~gv~c~~~----------~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l-------- 127 (256)
.+.|.|.++.|... .+++.|++++|++. .++...|.++++|++|++++|.++.. .+..+
T Consensus 4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 35688888888742 36889999999988 45553678888999999988887632 23334
Q ss_pred ---------------cCCccCcEeeccCCcCCCCCh-hhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcC
Q 035658 128 ---------------GNISKLKYLGLSSNLFSGAIP-PQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSL 191 (256)
Q Consensus 128 ---------------~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 191 (256)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 444445555555555543332 3455666666666666666655555666666666677666666
Q ss_pred cc-cCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 192 SG-SIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 192 ~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 64 45566666777777777777776666666777777777777777777666666666666654
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5e-24 Score=174.26 Aligned_cols=182 Identities=24% Similarity=0.299 Sum_probs=162.1
Q ss_pred CCCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCCh
Q 035658 69 GSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP 148 (256)
Q Consensus 69 ~~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 148 (256)
.|+.|.|..|. ...+.+++++++++ .+|. .+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~--~~~~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN--EGKKEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE--GGGTEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC--CCCeEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 46789999995 34567999999988 5555 333 689999999999998888899999999999999999998888
Q ss_pred hhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCC
Q 035658 149 PQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSN 228 (256)
Q Consensus 149 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 228 (256)
..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999877788899999999999999999777777899999999999999999777778999999
Q ss_pred CCEEEcccCcccccCChhccCCCCCCCC
Q 035658 229 LAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 229 L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
|++|++++|++++..+..+.++++|++|
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 9999999999998888889999988764
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.5e-24 Score=190.46 Aligned_cols=174 Identities=26% Similarity=0.303 Sum_probs=158.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..++.|++++|++++..+. .|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4789999999999976666 899999999999999999988899999999999999999999977667789999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999998888899999999999999999998888899999999999999999997777789999999999999999998
Q ss_pred cCChhccCCCCCCCC
Q 035658 242 LIPSEIGNLKSLSNL 256 (256)
Q Consensus 242 ~~p~~l~~l~~L~~L 256 (256)
..+..|..+++|+.|
T Consensus 191 ~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 191 IRDYSFKRLYRLKVL 205 (477)
T ss_dssp ECTTCSCSCTTCCEE
T ss_pred eChhhcccCccccee
Confidence 888888888888753
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=6.7e-24 Score=186.99 Aligned_cols=171 Identities=27% Similarity=0.302 Sum_probs=115.3
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..++.|++++|++.+..+. .|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 3577788888877755545 777777788888887777766667777777777777777777755555677777777777
Q ss_pred cccCCCCccCCccccC-------------------------CCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCc
Q 035658 162 LFENQLSGSIPHSLGN-------------------------LTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~-------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
+++|.++...+..|.. +++|++|++++|.++ .+| .+..+++|++|++++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 7777776544434444 455555555555554 233 3555666666666666666
Q ss_pred ccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 217 GSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+..|..|.++++|++|++++|.+++..+..|.++++|++
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 666666777777777777777777666666777776664
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.1e-23 Score=174.32 Aligned_cols=160 Identities=24% Similarity=0.276 Sum_probs=133.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+.+. + .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 63 ~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5788889988888752 2 678888899999999988877777788888899999999988877777788888899999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 99998887666677888889999999998887777677888889999999888887777778888889999999888886
Q ss_pred cCC
Q 035658 242 LIP 244 (256)
Q Consensus 242 ~~p 244 (256)
..|
T Consensus 220 ~~~ 222 (272)
T 3rfs_A 220 TCP 222 (272)
T ss_dssp CTT
T ss_pred cCc
Confidence 654
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2e-23 Score=174.40 Aligned_cols=169 Identities=26% Similarity=0.266 Sum_probs=147.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..++.|++++|.+.+..+. .|..+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 5789999999999876666 899999999999999999854 33 378999999999999998 7788889999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 9999999777788999999999999999999777777889999999999999999777777888999999999999998
Q ss_pred cCChhccCCCCCCC
Q 035658 242 LIPSEIGNLKSLSN 255 (256)
Q Consensus 242 ~~p~~l~~l~~L~~ 255 (256)
.+|..+...++|+.
T Consensus 186 ~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 186 TIPKGFFGSHLLPF 199 (290)
T ss_dssp CCCTTTTTTCCCSE
T ss_pred ccChhhcccccCCe
Confidence 56666776666664
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=185.72 Aligned_cols=172 Identities=21% Similarity=0.206 Sum_probs=143.6
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|++++..+. .+.++++|++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4789999999999865444 799999999999999999987788899999999999999999976666689999999999
Q ss_pred cccCCCCccCC-ccccCCCCCceEEeecC-cCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcc
Q 035658 162 LFENQLSGSIP-HSLGNLTNLVTLYIYNN-SLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSL 239 (256)
Q Consensus 162 ls~n~l~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 239 (256)
+++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999985433 47889999999999998 47766677888999999999999999988888898888888888888887
Q ss_pred cccCChhccCCCCCC
Q 035658 240 SGLIPSEIGNLKSLS 254 (256)
Q Consensus 240 ~~~~p~~l~~l~~L~ 254 (256)
+...+..+..+++|+
T Consensus 211 ~~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 211 ILLLEIFVDVTSSVE 225 (353)
T ss_dssp TTHHHHHHHHTTTEE
T ss_pred ccchhhhhhhccccc
Confidence 654433344455554
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.91 E-value=4.8e-23 Score=166.28 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=121.8
Q ss_pred CCCCCCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCC
Q 035658 66 TKIGSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSG 145 (256)
Q Consensus 66 ~~~~~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 145 (256)
.+.+.|.|+++.|.. +++. .+|. .+ .++|++|++++|++++..|..|..+++|++|++++|.++.
T Consensus 14 ~~~~~Cs~~~v~c~~-----------~~l~-~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRS-----------KRHA-SVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp CTTCEEETTEEECTT-----------SCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEeCCEeEccC-----------CCcC-ccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 456889999999963 2222 3333 22 2678888888888887777778888888888888888876
Q ss_pred CChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccC
Q 035658 146 AIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGN 225 (256)
Q Consensus 146 ~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 225 (256)
..+..|..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 65566778888888888888888666666777888888888888887 66777778888888888888888666667777
Q ss_pred CCCCCEEEcccCccccc
Q 035658 226 LSNLAILYIYNNSLSGL 242 (256)
Q Consensus 226 l~~L~~L~l~~n~l~~~ 242 (256)
+++|+.|++++|.++..
T Consensus 158 l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTCCEEECTTSCBCTT
T ss_pred CCCCCEEEeeCCCccCC
Confidence 88888888888887654
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-23 Score=176.94 Aligned_cols=173 Identities=23% Similarity=0.257 Sum_probs=150.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCc-hhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIP-PQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 160 (256)
.+++.|++++|.+. .++. .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCCCEEECCSCSEE-EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cccCEEECCCCccc-cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 46778888888876 3555 58889999999999999986544 578899999999999999998888889999999999
Q ss_pred EcccCCCCc-cCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcc
Q 035658 161 HLFENQLSG-SIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSL 239 (256)
Q Consensus 161 ~ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 239 (256)
++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999999986 5788899999999999999999988888899999999999999999977777888999999999999999
Q ss_pred cccCChhccCCC-CCCCC
Q 035658 240 SGLIPSEIGNLK-SLSNL 256 (256)
Q Consensus 240 ~~~~p~~l~~l~-~L~~L 256 (256)
++..|..+..++ +|++|
T Consensus 236 ~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp CBCSSSSCCCCCTTCCEE
T ss_pred cccCHHHHHhhhccCCEE
Confidence 998888888874 77653
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7.7e-23 Score=169.18 Aligned_cols=170 Identities=26% Similarity=0.370 Sum_probs=130.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.++++++.+.. ++ .+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 467788888877663 22 46777888888888888775 2 3677888888888888888876666777888888888
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 88888886666667778888888888888886666667778888888888888887666677778888888888888887
Q ss_pred cCChhccCCCCCCCC
Q 035658 242 LIPSEIGNLKSLSNL 256 (256)
Q Consensus 242 ~~p~~l~~l~~L~~L 256 (256)
..+..++.+++|+.|
T Consensus 196 ~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYI 210 (272)
T ss_dssp CCTTTTTTCTTCCEE
T ss_pred cCHHHHhCCcCCCEE
Confidence 777777777777653
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.9e-23 Score=173.01 Aligned_cols=172 Identities=27% Similarity=0.308 Sum_probs=93.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
.++.|++++|++++..+. .+.++++|++|++++|++.+..+..+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 355555555555533333 4555555555555555555444444555555555555555555444445555555555555
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCccc-CCcccCCCCCCCEEEccCCcCcccC----------------------
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGS-IPSELGNLKSLSNLALSSNKLSGSI---------------------- 219 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~---------------------- 219 (256)
++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 55555544333445555555555555555432 3444555555555555555444332
Q ss_pred ------cccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 220 ------PQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 220 ------~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
+..+. ..+|++|++++|.+++..+..|+++++|++|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEE
Confidence 22222 2367888888888887766667778777653
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=7.8e-24 Score=191.12 Aligned_cols=158 Identities=25% Similarity=0.250 Sum_probs=135.6
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|++++..+. .|.++++|++|++++|++++..|++|.++++|++|++++|.+++..|..|+.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 4799999999999977666 899999999999999999988888999999999999999999988888899999999999
Q ss_pred cccCCCCc-cCCccccCCCCCceEEeecCcCcccCC-cccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcc
Q 035658 162 LFENQLSG-SIPHSLGNLTNLVTLYIYNNSLSGSIP-SELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSL 239 (256)
Q Consensus 162 ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 239 (256)
+++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|++|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999986 356789999999999999998544444 6789999999999999999988888877665555555555544
Q ss_pred c
Q 035658 240 S 240 (256)
Q Consensus 240 ~ 240 (256)
.
T Consensus 185 ~ 185 (549)
T 2z81_A 185 A 185 (549)
T ss_dssp T
T ss_pred c
Confidence 3
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=5.6e-23 Score=174.60 Aligned_cols=183 Identities=24% Similarity=0.280 Sum_probs=121.1
Q ss_pred CCCCccceeecCCC----------CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEee
Q 035658 68 IGSCAWVGIHCNYG----------ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLG 137 (256)
Q Consensus 68 ~~~c~~~gv~c~~~----------~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 137 (256)
.+.|.|..+.|... .+++.|++++|.+.+..+. .|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 34578888888632 3789999999999865555 899999999999999999988888999999999999
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcC--------------------------
Q 035658 138 LSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSL-------------------------- 191 (256)
Q Consensus 138 L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l-------------------------- 191 (256)
+++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC
Confidence 9999887 4444332 4556666666655544444455555555555555544
Q ss_pred --------------------cccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCC
Q 035658 192 --------------------SGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLK 251 (256)
Q Consensus 192 --------------------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 251 (256)
++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 3333344455555556666666555555555555666666666666665 4455555555
Q ss_pred CCCC
Q 035658 252 SLSN 255 (256)
Q Consensus 252 ~L~~ 255 (256)
+|++
T Consensus 265 ~L~~ 268 (332)
T 2ft3_A 265 LLQV 268 (332)
T ss_dssp TCCE
T ss_pred cCCE
Confidence 5553
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4e-23 Score=179.18 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=64.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.|++++|.+.+..+. .|..+++|++|++++|.+.+..|..+.++++|++|++++|.++...+..|..+++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 455555555555543333 5566666666666666666555555666666666666666666333333456666666666
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSG 193 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (256)
++|.+++..+..+..+++|++|++++|.+++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 6666665555556666666666666666553
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=9.6e-23 Score=179.92 Aligned_cols=103 Identities=28% Similarity=0.289 Sum_probs=49.0
Q ss_pred cCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCE
Q 035658 152 GHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAI 231 (256)
Q Consensus 152 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 231 (256)
..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 33444444444444444433444444444444444444444444444444455555555555554444444555555555
Q ss_pred EEcccCcccccCChhccCCCCCC
Q 035658 232 LYIYNNSLSGLIPSEIGNLKSLS 254 (256)
Q Consensus 232 L~l~~n~l~~~~p~~l~~l~~L~ 254 (256)
|++++|++++..+..++.+++|+
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCC
T ss_pred EECCCCccccCCHhHhccCCccc
Confidence 55555555544444444444444
No 31
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=1.4e-22 Score=162.51 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=107.3
Q ss_pred CCCCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCC
Q 035658 68 IGSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAI 147 (256)
Q Consensus 68 ~~~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 147 (256)
.+.|.|..+.|. +++++ .+|. .+. +++++|++++|++++..+..|..+++|++|++++|.+++..
T Consensus 8 ~C~C~~~~v~c~-----------~~~l~-~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 8 ACTCSNNIVDCR-----------GKGLT-EIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp TSEEETTEEECT-----------TSCCS-SCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred CCEECCCEEEcC-----------CCCcC-cCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC
Confidence 345666666554 44444 3333 222 46777777777777655556777777777777777777666
Q ss_pred hhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCC
Q 035658 148 PPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLS 227 (256)
Q Consensus 148 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 227 (256)
|..|..+++|++|++++|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..++
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 77777777777777777777755445566777777777777777766666777777777777777777766666677777
Q ss_pred CCCEEEcccCccc
Q 035658 228 NLAILYIYNNSLS 240 (256)
Q Consensus 228 ~L~~L~l~~n~l~ 240 (256)
+|++|++++|.+.
T Consensus 153 ~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 153 AIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEeCCCCcC
Confidence 7777777777664
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.2e-22 Score=169.74 Aligned_cols=168 Identities=26% Similarity=0.272 Sum_probs=149.4
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.+++++++++ .+|. .+. +++++|++++|.+++..+..|.++++|++|++++|.+++. +.. ..+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~-~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCS-SCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEE
T ss_pred CCccEEECCCCCCC-cCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEE
Confidence 57889999999998 4555 333 6899999999999988888999999999999999999854 333 7899999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 9999999 678889999999999999999998777889999999999999999998888888999999999999999998
Q ss_pred cCChhccCCCCCCCC
Q 035658 242 LIPSEIGNLKSLSNL 256 (256)
Q Consensus 242 ~~p~~l~~l~~L~~L 256 (256)
..+..|.++++|++|
T Consensus 163 l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 163 LPAGLLNGLENLDTL 177 (290)
T ss_dssp CCTTTTTTCTTCCEE
T ss_pred cCHHHhcCcCCCCEE
Confidence 777778889888754
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=6.7e-23 Score=180.92 Aligned_cols=175 Identities=22% Similarity=0.257 Sum_probs=136.1
Q ss_pred CCEEEEEcCCCCCccccCC-cccCCCCCCcEEECCCCcCCCCCchh-ccCCccCcEeeccCCcCCCCChhhhcCC-----
Q 035658 82 ERVNSMNLTSIGLKGTLHD-FSFSSFPHLAYLDLQRNQLFGNIPPQ-IGNISKLKYLGLSSNLFSGAIPPQIGHL----- 154 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l----- 154 (256)
.+++.|++++|.+.+.++. ..+..+++|++|++++|++.+..|.. +.++++|++|++++|.+++..+..+..+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 4677788888877764433 13777777777777777777666654 6677777777777777765544433221
Q ss_pred --------------------------------------------------------------------------------
Q 035658 155 -------------------------------------------------------------------------------- 154 (256)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (256)
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence
Q ss_pred ------------CCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCccc
Q 035658 155 ------------SYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQS 222 (256)
Q Consensus 155 ------------~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 222 (256)
++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 35677777777777777888889999999999999999888888999999999999999998888888
Q ss_pred ccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 223 LGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
++.+++|++|++++|.+++..|..|.++++|++|
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 8999999999999999998888889888888764
No 34
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.6e-23 Score=168.66 Aligned_cols=170 Identities=18% Similarity=0.246 Sum_probs=119.4
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCc-CCCCCchhccCCccCcEeeccC-CcCCCCChhhhcCCCCCCE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQ-LFGNIPPQIGNISKLKYLGLSS-NLFSGAIPPQIGHLSYLKT 159 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~ 159 (256)
..++.|++++|++++..+. .|..+++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4688888888888855444 78888888888888886 7765566788888888888887 8888666677888888888
Q ss_pred EEcccCCCCccCCccccCCCCCc---eEEeecC-cCcccCCcccCCCCCCC-EEEccCCcCcccCcccccCCCCCCEEEc
Q 035658 160 LHLFENQLSGSIPHSLGNLTNLV---TLYIYNN-SLSGSIPSELGNLKSLS-NLALSSNKLSGSIPQSLGNLSNLAILYI 234 (256)
Q Consensus 160 L~ls~n~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l 234 (256)
|++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|++|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 8888888774 554 66666666 7777777 66655555566677777 7777777666333333333 56666666
Q ss_pred ccCc-ccccCChhccCC-CCCCC
Q 035658 235 YNNS-LSGLIPSEIGNL-KSLSN 255 (256)
Q Consensus 235 ~~n~-l~~~~p~~l~~l-~~L~~ 255 (256)
++|+ +++..+..|.++ ++|+.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSE
T ss_pred CCCCCcccCCHHHhhccccCCcE
Confidence 6663 665555556655 55553
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.3e-23 Score=187.92 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=59.0
Q ss_pred EEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcc
Q 035658 84 VNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLF 163 (256)
Q Consensus 84 v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 163 (256)
++.|++++|.+.+..+. .|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 77 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 44455555555543333 55555555555555555555555555555555555555555554333344555555555555
Q ss_pred cCCCCccCCccccCCCCCceEEeecCcCcc
Q 035658 164 ENQLSGSIPHSLGNLTNLVTLYIYNNSLSG 193 (256)
Q Consensus 164 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (256)
+|.+++..|..+..+++|++|++++|.+++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 555555555555555555555555555543
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=178.90 Aligned_cols=172 Identities=24% Similarity=0.253 Sum_probs=139.3
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCCh-------------
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP------------- 148 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p------------- 148 (256)
.+++.|++++|.+.+..+. .|.++++|++|++++|+++...+..|..+++|++|++++|.++...+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChh-hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 4677888888887754444 77777788888888877776555567777777777777776654333
Q ss_pred ------------hhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCc
Q 035658 149 ------------PQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 149 ------------~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
..|..+++|++|++++|+++ .+| .+..+++|++|++++|.+++..|..|..+++|++|++++|.++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 24566777777777777777 344 4788999999999999999888999999999999999999999
Q ss_pred ccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 217 GSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
+..+..|.++++|++|++++|++++..+..|..+++|+.|
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 9889999999999999999999998888888999988754
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.3e-22 Score=179.39 Aligned_cols=172 Identities=23% Similarity=0.231 Sum_probs=143.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChh------------
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPP------------ 149 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~------------ 149 (256)
.+++.|++++|.+.+..+. .|.++++|++|++++|++++..+..|..+++|++|++++|.++...+.
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCCcChh-hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 4788888888888865555 788888888888888888866666788888888888888877644332
Q ss_pred -------------hhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCc
Q 035658 150 -------------QIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 150 -------------~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
.|..+++|++|++++|++++ +| .+..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 35566777777777777774 33 4778899999999999999988999999999999999999999
Q ss_pred ccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 217 GSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
+..+..|..+++|++|++++|++++..+..|..+++|+.|
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 8889999999999999999999998888888889888754
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.5e-22 Score=170.37 Aligned_cols=184 Identities=24% Similarity=0.299 Sum_probs=132.3
Q ss_pred CCCCccceeecCC----------CCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEee
Q 035658 68 IGSCAWVGIHCNY----------GERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLG 137 (256)
Q Consensus 68 ~~~c~~~gv~c~~----------~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 137 (256)
.+.|.++.+.|.. ...++.|++++|++++..+. .|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3467888888863 23688999999999865555 799999999999999999988888999999999999
Q ss_pred ccCCcCCCCChhh----------------------hcCCCCCCEEEcccCCCCc--cCCccccCCCCCceEEeecCcCcc
Q 035658 138 LSSNLFSGAIPPQ----------------------IGHLSYLKTLHLFENQLSG--SIPHSLGNLTNLVTLYIYNNSLSG 193 (256)
Q Consensus 138 L~~n~l~~~~p~~----------------------~~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~ 193 (256)
+++|.++ .+|.. +..+++|++|++++|.++. ..+..+.++++|++|++++|.++.
T Consensus 107 Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 107 LSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9998877 34433 4444555555555555432 334445555555555555555552
Q ss_pred cCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 194 SIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 194 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 333322 567777777777776677788888888888888888888777778888887753
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=4.1e-23 Score=188.59 Aligned_cols=166 Identities=23% Similarity=0.254 Sum_probs=146.3
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+++..+. .|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5799999999999876666 899999999999999999988888999999999999999999988899999999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcc-cCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCC----EEEccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSG-SIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLA----ILYIYN 236 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~ 236 (256)
+++|.+++..+..+.++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999997777889999999999999999986 5688999999999999999999988787776665544 788888
Q ss_pred CcccccCChhcc
Q 035658 237 NSLSGLIPSEIG 248 (256)
Q Consensus 237 n~l~~~~p~~l~ 248 (256)
|.+++..+..+.
T Consensus 191 n~l~~~~~~~~~ 202 (606)
T 3vq2_A 191 NPIDFIQDQAFQ 202 (606)
T ss_dssp CCCCEECTTTTT
T ss_pred CCcceeCccccc
Confidence 888866655444
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=7.5e-23 Score=189.28 Aligned_cols=172 Identities=24% Similarity=0.288 Sum_probs=155.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+++..+. .|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 5899999999999975555 899999999999999999998899999999999999999999966666899999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCccccc--CCCCCCEEEcccCcc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLG--NLSNLAILYIYNNSL 239 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l 239 (256)
+++|++++..|..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999977778899999999999999999988888899999999999999999987776654 568999999999999
Q ss_pred cccCChhccCCCCCC
Q 035658 240 SGLIPSEIGNLKSLS 254 (256)
Q Consensus 240 ~~~~p~~l~~l~~L~ 254 (256)
++..|..+..+++|+
T Consensus 184 ~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLF 198 (680)
T ss_dssp CCBCTTGGGGSSEEC
T ss_pred cccChhhhhhhhhhh
Confidence 999888888776654
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=3.4e-22 Score=182.47 Aligned_cols=172 Identities=26% Similarity=0.293 Sum_probs=136.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCch-hccCCccCcEeeccCCcCCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP-QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 160 (256)
.+++.+++++|.+.+..+. .+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 376 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp TTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 4678888888887766665 778888888888888888766544 37788888888888888887777788888888888
Q ss_pred EcccCCCCcc---CCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccC
Q 035658 161 HLFENQLSGS---IPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNN 237 (256)
Q Consensus 161 ~ls~n~l~~~---~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 237 (256)
++++|++++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+.++++| +|++++|
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 8888888752 23567778888888888888887777888888888888888888888888888888888 8888888
Q ss_pred cccccCChhccCCCCCCC
Q 035658 238 SLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 238 ~l~~~~p~~l~~l~~L~~ 255 (256)
.+++.+|..+..+++|++
T Consensus 534 ~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRT 551 (606)
T ss_dssp CCCCCCGGGHHHHHTSSE
T ss_pred cccccCHhhcccCCCCCE
Confidence 888877777777777664
No 42
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=158.85 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=113.9
Q ss_pred EEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCc-hhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEccc
Q 035658 86 SMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIP-PQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFE 164 (256)
Q Consensus 86 ~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 164 (256)
.++++++.++ .+|. .+ .+.+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4555666665 3444 23 2345788888888876544 3467788888888888888876666788888888888888
Q ss_pred CCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 165 NQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 165 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 888776666777888888888888888877777788888888888888888877777788888888888888877643
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=3.6e-22 Score=182.47 Aligned_cols=165 Identities=26% Similarity=0.280 Sum_probs=133.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..++.|+|++|.+++..+. .|.++++|++|+|++|+|++..+++|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3688999999998854444 889999999999999999877777888999999999999999877777888999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcc-cCCcccCCCCCCCEEEccCCcCcccCcccccCCCC----CCEEEccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSG-SIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSN----LAILYIYN 236 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----L~~L~l~~ 236 (256)
+++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.+ ...++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999987666678889999999999998875 45677788899999999999988777777655443 34677888
Q ss_pred CcccccCChhc
Q 035658 237 NSLSGLIPSEI 247 (256)
Q Consensus 237 n~l~~~~p~~l 247 (256)
|.++...+..+
T Consensus 211 n~l~~i~~~~~ 221 (635)
T 4g8a_A 211 NPMNFIQPGAF 221 (635)
T ss_dssp CCCCEECTTTT
T ss_pred CcccccCcccc
Confidence 88776554433
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-21 Score=169.86 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.++++++.+. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4455555555544 233323455555555555555555444445555555555555555555554555555555555555
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 555555332233455555555555555555444444555555555555555443
No 45
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=9.9e-22 Score=157.62 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=136.8
Q ss_pred CCCCCccceeecCCC----------CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEe
Q 035658 67 KIGSCAWVGIHCNYG----------ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYL 136 (256)
Q Consensus 67 ~~~~c~~~gv~c~~~----------~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 136 (256)
..+.|.|..+.|... ..++.|++++|.+++..+...|..+++|++|++++|++++..+..|.++++|++|
T Consensus 7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 345577888887632 3578999999999977565468999999999999999998878899999999999
Q ss_pred eccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCc
Q 035658 137 GLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 137 ~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999888888999999999999999999888999999999999999999999888999999999999999999987
Q ss_pred ccC
Q 035658 217 GSI 219 (256)
Q Consensus 217 ~~~ 219 (256)
...
T Consensus 167 c~c 169 (220)
T 2v70_A 167 CNC 169 (220)
T ss_dssp CSG
T ss_pred CCC
Confidence 543
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=6.3e-22 Score=180.71 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=152.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..++.|++++|.+++..+. .|.++++|++|++++|++.+..|.+|.++++|++|++++|.+++..|..|..+++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 4799999999999976666 899999999999999999988899999999999999999999988899999999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCC--EEEcccCcc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLA--ILYIYNNSL 239 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~l~~n~l 239 (256)
+++|++++..+..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999977678899999999999999999975444566699999999999999988888999999999 899999999
Q ss_pred cccCChhccC
Q 035658 240 SGLIPSEIGN 249 (256)
Q Consensus 240 ~~~~p~~l~~ 249 (256)
++..|..+..
T Consensus 192 ~~~~~~~~~~ 201 (606)
T 3t6q_A 192 AGIEPGAFDS 201 (606)
T ss_dssp CEECTTTTTT
T ss_pred CccChhHhhh
Confidence 9888776543
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.3e-21 Score=164.45 Aligned_cols=170 Identities=21% Similarity=0.280 Sum_probs=141.6
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCC---------------------CCCchhccCCccCcEeeccC
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLF---------------------GNIPPQIGNISKLKYLGLSS 140 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~l~~l~~L~~L~L~~ 140 (256)
.+++.|++++|.+.+..+. .+..+++|++|++++|+++ +..+..+.++++|++|++++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 76 KNLHTLILINNKISKISPG-AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp TTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 4678888888887765555 6777777777777777654 23334577888899999999
Q ss_pred CcCCC--CChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCccc
Q 035658 141 NLFSG--AIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGS 218 (256)
Q Consensus 141 n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 218 (256)
|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 98863 677889999999999999999984 565543 7999999999999988888999999999999999999988
Q ss_pred CcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 219 IPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
.+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEE
Confidence 8888999999999999999999 677788899888764
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=189.95 Aligned_cols=181 Identities=22% Similarity=0.236 Sum_probs=152.6
Q ss_pred CCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCC-chhccCCccCcEeeccCCcCCCCCh
Q 035658 70 SCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNI-PPQIGNISKLKYLGLSSNLFSGAIP 148 (256)
Q Consensus 70 ~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p 148 (256)
.|.|+.|.+ -..+++.|+|++|.+++..+. .|.++++|++|++++|...+.+ |.+|.++++|++|++++|.+.+..|
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 456777777 557899999999999876666 8999999999999999766555 7789999999999999999998889
Q ss_pred hhhcCCCCCCEEEcccCCCCccCCcc--ccCCCCCceEEeecCcCcccCC-cccCCCCCCCEEEccCCcCcccCcccccC
Q 035658 149 PQIGHLSYLKTLHLFENQLSGSIPHS--LGNLTNLVTLYIYNNSLSGSIP-SELGNLKSLSNLALSSNKLSGSIPQSLGN 225 (256)
Q Consensus 149 ~~~~~l~~L~~L~ls~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 225 (256)
..|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998766654 8899999999999999987654 57899999999999999998888887776
Q ss_pred C--CCCCEEEcccCcccccCChhccCCCC
Q 035658 226 L--SNLAILYIYNNSLSGLIPSEIGNLKS 252 (256)
Q Consensus 226 l--~~L~~L~l~~n~l~~~~p~~l~~l~~ 252 (256)
+ ++|+.|++++|.+++..|..++.+++
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred ccCCccceEECCCCccccccccchhhcCC
Confidence 6 77888888888887776666555443
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.3e-22 Score=182.58 Aligned_cols=170 Identities=21% Similarity=0.182 Sum_probs=121.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCc-hhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIP-PQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
+++.+++++|.+.+ ++. .+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 377 ~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp CCCEEECCSCSEEE-ECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred cccEeECCCCcccc-chh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 45555555555543 333 56677777777777777776655 5677777777777777777777777777777777777
Q ss_pred cccCCCCc-cCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 162 LFENQLSG-SIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 162 ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
+++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 77777775 35677777777777887777777777777777777888888877777777777777777888888887777
Q ss_pred ccCChhccCCC-CCCC
Q 035658 241 GLIPSEIGNLK-SLSN 255 (256)
Q Consensus 241 ~~~p~~l~~l~-~L~~ 255 (256)
.+|..+..++ +|++
T Consensus 535 -~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 535 -TSKGILQHFPKSLAF 549 (606)
T ss_dssp -CEESCGGGSCTTCCE
T ss_pred -ccCHhHhhhcccCcE
Confidence 3444566665 3554
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-21 Score=179.23 Aligned_cols=173 Identities=22% Similarity=0.189 Sum_probs=137.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.++++++.+. .+|+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+.+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 5678888888776 445436788888999999999888777778888889999999999888877778888889999999
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCc----------------------
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIP---------------------- 220 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---------------------- 220 (256)
++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++...
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 9998886555557888889999999998888777778888888888888887764321
Q ss_pred -------------------------------------ccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 221 -------------------------------------QSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 221 -------------------------------------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
..+..+++|+.|++++|.+++.+|..|+++++|+.|
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 224556778888888888888878888888777653
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=7.1e-22 Score=175.57 Aligned_cols=173 Identities=20% Similarity=0.171 Sum_probs=135.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+.+..+. .|.++++|++|++++|+++...+..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 5789999999998876666 888999999999999998866666788899999999999999888888888889999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEE---------
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAIL--------- 232 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------- 232 (256)
+++|.+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 99998887777788888888888888888886655667777888888888777776666566655555554
Q ss_pred ---------------EcccCcccccCChhccCCCCCCC
Q 035658 233 ---------------YIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 233 ---------------~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
++++|.+++..+..+.++++|+.
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 55555565444456667777664
No 52
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=5e-21 Score=151.92 Aligned_cols=156 Identities=22% Similarity=0.253 Sum_probs=136.7
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEccc
Q 035658 85 NSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFE 164 (256)
Q Consensus 85 ~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 164 (256)
+.++.+++++. .+|. . ..+++++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPT-G--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCC-C--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 46788888876 3443 2 346899999999999977777789999999999999999977777789999999999999
Q ss_pred CCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCC
Q 035658 165 NQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIP 244 (256)
Q Consensus 165 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 244 (256)
|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99997766778999999999999999997777778999999999999999997777778999999999999999887654
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=4.8e-22 Score=181.64 Aligned_cols=164 Identities=21% Similarity=0.245 Sum_probs=142.2
Q ss_pred EEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCC
Q 035658 87 MNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ 166 (256)
Q Consensus 87 l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 166 (256)
.+-++.+++ .+|. .+. +++++|+|++|+|++..+.+|.++++|++|++++|.|++..+..|.++++|++|++++|+
T Consensus 36 ~~c~~~~l~-~vP~-~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 36 YQCMELNFY-KIPD-NLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EECTTSCCS-SCCS-SSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcC-ccCC-CCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 344455555 4554 332 479999999999998777899999999999999999998888899999999999999999
Q ss_pred CCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcc-cCcccccCCCCCCEEEcccCcccccCCh
Q 035658 167 LSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSG-SIPQSLGNLSNLAILYIYNNSLSGLIPS 245 (256)
Q Consensus 167 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 245 (256)
+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 997777789999999999999999998777789999999999999999976 4678889999999999999999998888
Q ss_pred hccCCCCCC
Q 035658 246 EIGNLKSLS 254 (256)
Q Consensus 246 ~l~~l~~L~ 254 (256)
.+..+++++
T Consensus 192 ~l~~L~~l~ 200 (635)
T 4g8a_A 192 DLRVLHQMP 200 (635)
T ss_dssp GGHHHHTCT
T ss_pred cccchhhhh
Confidence 887665544
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2.1e-21 Score=179.51 Aligned_cols=173 Identities=21% Similarity=0.193 Sum_probs=90.6
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCC--CCChhhhcCCCCCCE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFS--GAIPPQIGHLSYLKT 159 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~ 159 (256)
.+++.|++++|.+.+.++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. +..|..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 467777777777776666546677777777777777665444444444444444444444443 234444555555555
Q ss_pred EEcccCCCCccCCccccCCCCCceEEeecCcCcccCC--------cccCCCCCCCEEEccCCcCcccCcccccCCCCCCE
Q 035658 160 LHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIP--------SELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAI 231 (256)
Q Consensus 160 L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 231 (256)
|++++|++++..+..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.++...+..|.++++|++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 5555555554444445555555555555555543211 11344455555555555554333334445555555
Q ss_pred EEcccCcccccCChhccCCCCCC
Q 035658 232 LYIYNNSLSGLIPSEIGNLKSLS 254 (256)
Q Consensus 232 L~l~~n~l~~~~p~~l~~l~~L~ 254 (256)
|++++|++++..+..|.++++|+
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCC
Confidence 55555555544444444444444
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=6.9e-22 Score=169.92 Aligned_cols=172 Identities=25% Similarity=0.244 Sum_probs=105.0
Q ss_pred CCCCccceeecCCC----------CCEEEEEcCCCCCccccCCcccC-CCCCCcEEECCCCcCCCCCchhccCCccCcEe
Q 035658 68 IGSCAWVGIHCNYG----------ERVNSMNLTSIGLKGTLHDFSFS-SFPHLAYLDLQRNQLFGNIPPQIGNISKLKYL 136 (256)
Q Consensus 68 ~~~c~~~gv~c~~~----------~~v~~l~L~~~~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 136 (256)
.+.|.+..+.|... ..++.|+|++|++++..+. .+. .+++|++|++++|++++..+..|.++++|++|
T Consensus 15 ~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 15 NCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 34466666666421 2456666666666644433 555 66667777777766665555566666667777
Q ss_pred eccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCccc---CCCCCCCEEEccCC
Q 035658 137 GLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSEL---GNLKSLSNLALSSN 213 (256)
Q Consensus 137 ~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n 213 (256)
++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++..+..+ ..+++|++|++++|
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 777776665555566666667777777776665556666666667777777766664333333 34666667777766
Q ss_pred cCcccCcccccCCCC--CCEEEcccCccc
Q 035658 214 KLSGSIPQSLGNLSN--LAILYIYNNSLS 240 (256)
Q Consensus 214 ~l~~~~~~~~~~l~~--L~~L~l~~n~l~ 240 (256)
.++...+..+..++. ++.|++++|.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 666544455555554 356666666654
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=7.6e-23 Score=172.46 Aligned_cols=166 Identities=22% Similarity=0.250 Sum_probs=89.3
Q ss_pred CEEEEEcCCCCCccccCCcccCCC-----CCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCC--Chhhh--cC
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSF-----PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGA--IPPQI--GH 153 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~--~~ 153 (256)
+++.|++++|.+++. |. .+..+ ++|++|++++|++.+..|..+.++++|++|++++|.+.+. .+..+ ..
T Consensus 122 ~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 455555555555543 32 33333 5555555555555544445555555555555555555432 12222 45
Q ss_pred CCCCCEEEcccCCCCcc--CC-ccccCCCCCceEEeecCcCcccCC-cccCCCCCCCEEEccCCcCcccCcccccCCCCC
Q 035658 154 LSYLKTLHLFENQLSGS--IP-HSLGNLTNLVTLYIYNNSLSGSIP-SELGNLKSLSNLALSSNKLSGSIPQSLGNLSNL 229 (256)
Q Consensus 154 l~~L~~L~ls~n~l~~~--~p-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 229 (256)
+++|++|++++|++++. ++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 276 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence 55555555555555521 11 223455666666666666665443 33445566666777666666 4555444 566
Q ss_pred CEEEcccCcccccCChhccCCCCCCC
Q 035658 230 AILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 230 ~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
++|++++|++++. |. +..+++|++
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~ 300 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVGN 300 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEEE
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCCE
Confidence 7777777777655 43 566665543
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.3e-21 Score=164.61 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=120.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCC-----
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSY----- 156 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~----- 156 (256)
.+++.|++++|.+++..+. .+.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..|..+++
T Consensus 78 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred CCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 4688888888888765555 7788888888888877776 3333322 44444444444444333333444444
Q ss_pred -----------------------------------------CCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccC
Q 035658 157 -----------------------------------------LKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSI 195 (256)
Q Consensus 157 -----------------------------------------L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 195 (256)
|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 444444444444444566788899999999999999888
Q ss_pred CcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCC
Q 035658 196 PSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNL 250 (256)
Q Consensus 196 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 250 (256)
+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|...
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 888999999999999999998 788889999999999999999998877777654
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=179.58 Aligned_cols=168 Identities=26% Similarity=0.291 Sum_probs=151.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+++..+. .|.++++|++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 5799999999999876655 899999999999999999987788899999999999999999988888999999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcc-cCCcccCCCCCCCEEEccCCcCcccCcccccCCCCC----CEEEccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSG-SIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNL----AILYIYN 236 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~l~~ 236 (256)
+++|++++..+..+.++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+++| +.+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99999996655579999999999999999987 468899999999999999999998888888888888 8999999
Q ss_pred CcccccCChhccCC
Q 035658 237 NSLSGLIPSEIGNL 250 (256)
Q Consensus 237 n~l~~~~p~~l~~l 250 (256)
|.+++..|..+...
T Consensus 187 n~l~~~~~~~~~~~ 200 (570)
T 2z63_A 187 NPMNFIQPGAFKEI 200 (570)
T ss_dssp CCCCEECTTTTTTC
T ss_pred CCceecCHHHhccC
Confidence 99998877766543
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=6.4e-23 Score=188.66 Aligned_cols=174 Identities=17% Similarity=0.291 Sum_probs=131.5
Q ss_pred CCccceeecC--CCCCEEEEEcCCCCCccc-----------------cCCcccC--CCCCCcEEECCCCcCCCCCchhcc
Q 035658 70 SCAWVGIHCN--YGERVNSMNLTSIGLKGT-----------------LHDFSFS--SFPHLAYLDLQRNQLFGNIPPQIG 128 (256)
Q Consensus 70 ~c~~~gv~c~--~~~~v~~l~L~~~~l~~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~ 128 (256)
.+.+.|+.-. .-.+++.|++++|.++|. +|. .+. ++++|++|++++|++.+.+|+.++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 3455664321 235789999999999985 777 777 999999999999999999999999
Q ss_pred CCccCcEeeccCCc-CCC-CChhhhcCC------CCCCEEEcccCCCCccCCc--cccCCCCCceEEeecCcCcccCCcc
Q 035658 129 NISKLKYLGLSSNL-FSG-AIPPQIGHL------SYLKTLHLFENQLSGSIPH--SLGNLTNLVTLYIYNNSLSGSIPSE 198 (256)
Q Consensus 129 ~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (256)
++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|++|++++|.++|.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 99999999999998 887 788877766 88888888888888 6777 78888888888888888887777 6
Q ss_pred cCCCCCCCEEEccCCcCcccCcccccCCCC-CCEEEcccCcccccCChhcc
Q 035658 199 LGNLKSLSNLALSSNKLSGSIPQSLGNLSN-LAILYIYNNSLSGLIPSEIG 248 (256)
Q Consensus 199 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~l~ 248 (256)
+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 666666666666666665 55555655665 666666666655 4444443
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=9.5e-22 Score=162.73 Aligned_cols=148 Identities=23% Similarity=0.238 Sum_probs=135.1
Q ss_pred CCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEe
Q 035658 107 PHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYI 186 (256)
Q Consensus 107 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 186 (256)
+++++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999777778999999999999999999877888999999999999999999888888999999999999
Q ss_pred ecCcCcccCCcccCCCCCCCEEEccCCcCccc-CcccccCCCCCCEEEcccCcccccCChhccCCCCCC
Q 035658 187 YNNSLSGSIPSELGNLKSLSNLALSSNKLSGS-IPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLS 254 (256)
Q Consensus 187 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 254 (256)
++|.+.+..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|++++..+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 99999977776899999999999999999864 589999999999999999999988887777766665
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=172.60 Aligned_cols=161 Identities=24% Similarity=0.242 Sum_probs=141.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCCh-hhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP-PQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L 160 (256)
.+++.|++++|.+++..+. .|.++++|++|++++|++++..+..+.++++|++|++++|.+++..+ ..+..+++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 5899999999999976666 89999999999999999997666669999999999999999995444 478999999999
Q ss_pred EcccC-CCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcc
Q 035658 161 HLFEN-QLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSL 239 (256)
Q Consensus 161 ~ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 239 (256)
++++| .+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 99999 47766678899999999999999999988899999999999999999999754444556689999999999999
Q ss_pred cccC
Q 035658 240 SGLI 243 (256)
Q Consensus 240 ~~~~ 243 (256)
++..
T Consensus 235 ~~~~ 238 (353)
T 2z80_A 235 DTFH 238 (353)
T ss_dssp TTCC
T ss_pred cccc
Confidence 8753
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=5e-22 Score=161.08 Aligned_cols=168 Identities=21% Similarity=0.301 Sum_probs=143.4
Q ss_pred CCEEEEEcCCCC-CccccCCcccCCCCCCcEEECCC-CcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCC-
Q 035658 82 ERVNSMNLTSIG-LKGTLHDFSFSSFPHLAYLDLQR-NQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLK- 158 (256)
Q Consensus 82 ~~v~~l~L~~~~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~- 158 (256)
.+++.|++++|. +++ +++..|..+++|++|++++ |++++..+..|.++++|++|++++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp TTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred CCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 589999999997 764 4444899999999999999 99997777889999999999999999995 665 88899998
Q ss_pred --EEEcccC-CCCccCCccccCCCCCc-eEEeecCcCcccCCcccCCCCCCCEEEccCCc-CcccCcccccCC-CCCCEE
Q 035658 159 --TLHLFEN-QLSGSIPHSLGNLTNLV-TLYIYNNSLSGSIPSELGNLKSLSNLALSSNK-LSGSIPQSLGNL-SNLAIL 232 (256)
Q Consensus 159 --~L~ls~n-~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L 232 (256)
+|++++| .+++..+..|.++++|+ +|++++|+++ .+|......++|++|++++|+ +++..+..|..+ ++|++|
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 9999999 99977777799999999 9999999999 445443334899999999995 987778889999 999999
Q ss_pred EcccCcccccCChhccCCCCC
Q 035658 233 YIYNNSLSGLIPSEIGNLKSL 253 (256)
Q Consensus 233 ~l~~n~l~~~~p~~l~~l~~L 253 (256)
++++|++++..+..+.+++.|
T Consensus 211 ~l~~N~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 211 DVSQTSVTALPSKGLEHLKEL 231 (239)
T ss_dssp ECTTCCCCCCCCTTCTTCSEE
T ss_pred ECCCCccccCChhHhccCcee
Confidence 999999997766656555544
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.2e-22 Score=171.25 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=129.9
Q ss_pred CCEEEEEcCCCCCccccCCccc--CCCCCCcEEECCCCcCCCCCchhccCC-----ccCcEeeccCCcCCCCChhhhcCC
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSF--SSFPHLAYLDLQRNQLFGNIPPQIGNI-----SKLKYLGLSSNLFSGAIPPQIGHL 154 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~l 154 (256)
.+++.|++++|++++.+|. .+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+++..|..|..+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPP-PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCC-CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCcccchhHH-HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5788999999999888777 44 8889999999999999876 7777766 889999999999988777888899
Q ss_pred CCCCEEEcccCCCCcc--CCccc--cCCCCCceEEeecCcCcc--cCC-cccCCCCCCCEEEccCCcCcccCc-ccccCC
Q 035658 155 SYLKTLHLFENQLSGS--IPHSL--GNLTNLVTLYIYNNSLSG--SIP-SELGNLKSLSNLALSSNKLSGSIP-QSLGNL 226 (256)
Q Consensus 155 ~~L~~L~ls~n~l~~~--~p~~~--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l 226 (256)
++|++|++++|++.+. .+..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|.+++..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999987754 23334 788899999999998873 122 334577889999999999887664 456667
Q ss_pred CCCCEEEcccCcccccCChhcc
Q 035658 227 SNLAILYIYNNSLSGLIPSEIG 248 (256)
Q Consensus 227 ~~L~~L~l~~n~l~~~~p~~l~ 248 (256)
++|++|++++|.++ .+|..+.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC
T ss_pred CCCCEEECCCCccC-hhhhhcc
Confidence 88999999999988 5565544
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=6.5e-22 Score=179.11 Aligned_cols=172 Identities=22% Similarity=0.243 Sum_probs=128.5
Q ss_pred CCEEEEEcCCCCCcccc--CCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCCh-hhhcCCCCCC
Q 035658 82 ERVNSMNLTSIGLKGTL--HDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP-PQIGHLSYLK 158 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~ 158 (256)
.+++.+++++|.+.+.. +. .+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCEEeCcCCccCccccccc-cccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 45677777777776432 33 56677777777777777764433 37777888888888887776554 4577778888
Q ss_pred EEEcccCCCCccCCccccCCCCCceEEeecCcCc-ccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccC
Q 035658 159 TLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLS-GSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNN 237 (256)
Q Consensus 159 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 237 (256)
+|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8888888887777777778888888888888876 467777778888888888888888777777888888888888888
Q ss_pred cccccCChhccCCCCCCC
Q 035658 238 SLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 238 ~l~~~~p~~l~~l~~L~~ 255 (256)
++++.++..+.++++|+.
T Consensus 505 ~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp CCSCCCTTTTTTCTTCCE
T ss_pred cCCCCCHHHhhcccCCcE
Confidence 888777777777777765
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=3e-21 Score=165.94 Aligned_cols=164 Identities=23% Similarity=0.237 Sum_probs=142.6
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhcc-CCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcc
Q 035658 85 NSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIG-NISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLF 163 (256)
Q Consensus 85 ~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 163 (256)
+.+++++++++ .+|. .+ .+.++.|++++|++++..+..+. ++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 47899999988 4555 33 24689999999999987777787 99999999999999998888889999999999999
Q ss_pred cCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccc---cCCCCCCEEEcccCccc
Q 035658 164 ENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSL---GNLSNLAILYIYNNSLS 240 (256)
Q Consensus 164 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~ 240 (256)
+|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..| ..+++|+.|++++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999998777789999999999999999998888899999999999999999996655556 56899999999999999
Q ss_pred ccCChhccCCCC
Q 035658 241 GLIPSEIGNLKS 252 (256)
Q Consensus 241 ~~~p~~l~~l~~ 252 (256)
+..+..+..+++
T Consensus 177 ~l~~~~~~~l~~ 188 (361)
T 2xot_A 177 KLPLTDLQKLPA 188 (361)
T ss_dssp CCCHHHHHHSCH
T ss_pred ccCHHHhhhccH
Confidence 877777776654
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=173.49 Aligned_cols=150 Identities=25% Similarity=0.298 Sum_probs=124.6
Q ss_pred CCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCC--CChhhhcCCCCCCEEEcccCCCCccCCc-cccCCCC
Q 035658 104 SSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSG--AIPPQIGHLSYLKTLHLFENQLSGSIPH-SLGNLTN 180 (256)
Q Consensus 104 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~ 180 (256)
..+++|++|++++|.+++.+|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 678889999999999988888889999999999999999986 4567788999999999999999875555 4778889
Q ss_pred CceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 181 LVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 181 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
|++|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 99999999999877766654 78999999999998 677777788999999999999985444448888888753
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=6.6e-21 Score=152.80 Aligned_cols=144 Identities=24% Similarity=0.363 Sum_probs=130.6
Q ss_pred cEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecC
Q 035658 110 AYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189 (256)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (256)
+.++.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46889999987 5676554 78999999999999877889999999999999999999888999999999999999999
Q ss_pred cCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 190 SLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 9997666678899999999999999998889999999999999999999999888889999988753
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.5e-21 Score=174.58 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccC--ChhccCCCCCCC
Q 035658 200 GNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLI--PSEIGNLKSLSN 255 (256)
Q Consensus 200 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~ 255 (256)
..+++|++|++++|.+++..|..++++++|++|++++|++++.. |..++++++|++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 34455666666666666555666666666666666666666422 344555555554
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=6.7e-21 Score=172.72 Aligned_cols=150 Identities=22% Similarity=0.287 Sum_probs=123.6
Q ss_pred CCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCC--ChhhhcCCCCCCEEEcccCCCCccCCc-cccCCCC
Q 035658 104 SSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGA--IPPQIGHLSYLKTLHLFENQLSGSIPH-SLGNLTN 180 (256)
Q Consensus 104 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~ 180 (256)
..+++|++|++++|.+++.+|..+.++++|++|++++|.+++. .|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 6788999999999999988888899999999999999999863 346688999999999999999874554 4778899
Q ss_pred CceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 181 LVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 181 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
|++|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 99999999999877665544 68999999999988 666666688999999999999995444448888888753
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=1.9e-21 Score=175.50 Aligned_cols=172 Identities=22% Similarity=0.265 Sum_probs=148.7
Q ss_pred CCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChh
Q 035658 70 SCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPP 149 (256)
Q Consensus 70 ~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 149 (256)
.|.|.|+ |+ .++++++ .+|. .+. ++|++|++++|++++..|..|.++++|++|++++|.+++..|.
T Consensus 3 ~C~~~~~-c~---------~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD---------GRSRSFT-SIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE---------CTTSCCS-SCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE---------CCCCccc-cccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4888887 64 3456666 5555 332 7999999999999988888999999999999999999988889
Q ss_pred hhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcc-cCCcccCCCCCCCEEEccCCcCcccC-cccccCCC
Q 035658 150 QIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSG-SIPSELGNLKSLSNLALSSNKLSGSI-PQSLGNLS 227 (256)
Q Consensus 150 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~ 227 (256)
.|..+++|++|++++|++++..|..+.++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999998777779999999999999999986 45678999999999999999844444 46899999
Q ss_pred CCCEEEcccCcccccCChhccCCCCCCC
Q 035658 228 NLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 228 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+|++|++++|.+++..|..++++++|++
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred ccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999999999998888776654
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2e-20 Score=157.48 Aligned_cols=160 Identities=29% Similarity=0.408 Sum_probs=122.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+.+.. . +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 63 ~~L~~L~L~~n~i~~~~-~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLA-P--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCCCCG-G--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCCCh-h--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 57888888888887533 2 7888888888888888875 33 57888888888888888885 343 78888888888
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|.+++..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 88888885433 77888888888888888754 33 7788888888888888875443 6778888888888888886
Q ss_pred cCChhccCCCCCCCC
Q 035658 242 LIPSEIGNLKSLSNL 256 (256)
Q Consensus 242 ~~p~~l~~l~~L~~L 256 (256)
..+ +..+++|+.|
T Consensus 210 ~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 210 VSP--LANTSNLFIV 222 (308)
T ss_dssp CGG--GTTCTTCCEE
T ss_pred ccc--ccCCCCCCEE
Confidence 543 6777777653
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=179.44 Aligned_cols=109 Identities=24% Similarity=0.273 Sum_probs=49.8
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhh--hcCCCCCCEE
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQ--IGHLSYLKTL 160 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L 160 (256)
+++.|++++|...+.+++..|.++++|++|++++|.+.+..|+.|.++++|++|++++|.+++..|.. +.++++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 44455555554444443324455555555555555554444444445555555555555444433332 4444444444
Q ss_pred EcccCCCCccCC-ccccCCCCCceEEeecCcC
Q 035658 161 HLFENQLSGSIP-HSLGNLTNLVTLYIYNNSL 191 (256)
Q Consensus 161 ~ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l 191 (256)
++++|.+++..+ ..|.++++|++|++++|.+
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 444444443322 2344444444444444443
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.1e-21 Score=185.07 Aligned_cols=175 Identities=17% Similarity=0.240 Sum_probs=147.3
Q ss_pred CccceeecC--CCCCEEEEEcCCCCCcc-----------------ccCCcccC--CCCCCcEEECCCCcCCCCCchhccC
Q 035658 71 CAWVGIHCN--YGERVNSMNLTSIGLKG-----------------TLHDFSFS--SFPHLAYLDLQRNQLFGNIPPQIGN 129 (256)
Q Consensus 71 c~~~gv~c~--~~~~v~~l~L~~~~l~~-----------------~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~ 129 (256)
+.+.++... .-.+++.|+|++|.++| .+|. .+. ++++|++|++++|++.+.+|..+.+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 455554322 23589999999999998 3777 766 9999999999999999999999999
Q ss_pred CccCcEeeccCCc-CCC-CChhhhcCCC-------CCCEEEcccCCCCccCCc--cccCCCCCceEEeecCcCcccCCcc
Q 035658 130 ISKLKYLGLSSNL-FSG-AIPPQIGHLS-------YLKTLHLFENQLSGSIPH--SLGNLTNLVTLYIYNNSLSGSIPSE 198 (256)
Q Consensus 130 l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (256)
+++|++|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|. .+.++++|++|++++|.++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 9999999999998 887 7887666554 9999999999999 7888 8899999999999999998 777 8
Q ss_pred cCCCCCCCEEEccCCcCcccCcccccCCCC-CCEEEcccCcccccCChhccCCC
Q 035658 199 LGNLKSLSNLALSSNKLSGSIPQSLGNLSN-LAILYIYNNSLSGLIPSEIGNLK 251 (256)
Q Consensus 199 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~l~~l~ 251 (256)
+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 888999999999999988 78888888888 999999999888 5666665543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.1e-21 Score=172.19 Aligned_cols=167 Identities=23% Similarity=0.164 Sum_probs=111.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCch----------------hccCCccCcEeeccCCcCCC
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP----------------QIGNISKLKYLGLSSNLFSG 145 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------~l~~l~~L~~L~L~~n~l~~ 145 (256)
.+++.|++++|.+++..+ +..+++|++|++++|.+++..+. ....+++|++|++++|.+++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~ 134 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (487)
T ss_dssp TTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCS
T ss_pred CCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCC
Confidence 467788888888776543 66667777776666665432110 01234566666777777776
Q ss_pred CChhhhcCCCCCCEEEcccCCCCccCCcccc-CCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCccccc
Q 035658 146 AIPPQIGHLSYLKTLHLFENQLSGSIPHSLG-NLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLG 224 (256)
Q Consensus 146 ~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 224 (256)
..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++.. ....+++|++|++++|.+++..| .+.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~ 211 (487)
T 3oja_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQ 211 (487)
T ss_dssp GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGG
T ss_pred CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHc
Confidence 6666777777777777777777766666664 5777777777777777542 23357778888888888775444 477
Q ss_pred CCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 225 NLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
.+++|+.|++++|.+++ +|..+..+++|+.
T Consensus 212 ~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~ 241 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (487)
T ss_dssp GGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred CCCCccEEEecCCcCcc-cchhhccCCCCCE
Confidence 77888888888888875 4556777776654
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=162.38 Aligned_cols=167 Identities=21% Similarity=0.222 Sum_probs=98.6
Q ss_pred CEEEEEcCCCCCccccCCccc--CCCCCCcEEECCCCcCCCCCc----hhccCCccCcEeeccCCcCCCCChhhhcCCCC
Q 035658 83 RVNSMNLTSIGLKGTLHDFSF--SSFPHLAYLDLQRNQLFGNIP----PQIGNISKLKYLGLSSNLFSGAIPPQIGHLSY 156 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 156 (256)
+++.|++++|.+.+..+. .+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 477777777777776666 44 667777777777777765433 23345667777777777776666666666777
Q ss_pred CCEEEcccCCCCcc--C--Ccc---------------------------ccCCCCCceEEeecCcCcccCCcccCCC---
Q 035658 157 LKTLHLFENQLSGS--I--PHS---------------------------LGNLTNLVTLYIYNNSLSGSIPSELGNL--- 202 (256)
Q Consensus 157 L~~L~ls~n~l~~~--~--p~~---------------------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l--- 202 (256)
|++|++++|++.+. + +.. +..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 77777777765421 1 111 2344555555666665555545444444
Q ss_pred CCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 203 KSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 203 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 46666666666665 4444442 5666666666666653 21 344555543
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=4.2e-20 Score=154.23 Aligned_cols=148 Identities=29% Similarity=0.407 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+++.. + +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++. +.+..+++|++|+
T Consensus 68 ~~L~~L~L~~n~l~~~~-~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIK-P--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 140 (291)
T ss_dssp TTCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred CCCCEEEccCCccCCCc-c--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence 46777777777776432 2 6677777777777777764 23 367777777777777777643 3566777777777
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 777777643 456677777777777777775433 6677777777777777764 33 36677777777777777664
Q ss_pred c
Q 035658 242 L 242 (256)
Q Consensus 242 ~ 242 (256)
.
T Consensus 215 ~ 215 (291)
T 1h6t_A 215 K 215 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=9.1e-21 Score=149.32 Aligned_cols=151 Identities=17% Similarity=0.276 Sum_probs=129.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.+++++|++. .++ .+..+++|++|++++|.+. .++.+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 47889999999988 444 4888999999999999775 345789999999999999999987888899999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCc-CcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNS-LSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
+++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 99999998788889999999999999998 65 555 68899999999999999985 33 6788999999999999986
Q ss_pred c
Q 035658 241 G 241 (256)
Q Consensus 241 ~ 241 (256)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 78
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.7e-20 Score=148.71 Aligned_cols=144 Identities=25% Similarity=0.290 Sum_probs=128.6
Q ss_pred CcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeec
Q 035658 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYN 188 (256)
Q Consensus 109 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 188 (256)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456888888887 5676554 8999999999999988899999999999999999999866667789999999999999
Q ss_pred CcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 189 NSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 189 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|+.|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 9999777777899999999999999999 778888999999999999999998888889999988754
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.4e-20 Score=154.78 Aligned_cols=160 Identities=28% Similarity=0.461 Sum_probs=137.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|+++++++.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 478999999999874 43 588899999999999999864 44 9999999999999999985 34 689999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 999999964 4 38999999999999999986543 8899999999999999986444 8899999999999999997
Q ss_pred cCChhccCCCCCCCC
Q 035658 242 LIPSEIGNLKSLSNL 256 (256)
Q Consensus 242 ~~p~~l~~l~~L~~L 256 (256)
..+ +..+++|++|
T Consensus 188 ~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 188 ISP--LASLPNLIEV 200 (308)
T ss_dssp CGG--GGGCTTCCEE
T ss_pred Chh--hcCCCCCCEE
Confidence 544 7888888754
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=165.49 Aligned_cols=160 Identities=22% Similarity=0.246 Sum_probs=141.0
Q ss_pred CCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCC--CCchhccCCccCcEeeccCCcCCCCChh-hhcCCCC
Q 035658 80 YGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFG--NIPPQIGNISKLKYLGLSSNLFSGAIPP-QIGHLSY 156 (256)
Q Consensus 80 ~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~ 156 (256)
....++.|++++|.+.+.++. .+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 346899999999999988887 89999999999999999986 4667899999999999999999975665 4888999
Q ss_pred CCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccc
Q 035658 157 LKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYN 236 (256)
Q Consensus 157 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 236 (256)
|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 99999999999887777654 78999999999999 7888888999999999999999954444589999999999999
Q ss_pred CcccccC
Q 035658 237 NSLSGLI 243 (256)
Q Consensus 237 n~l~~~~ 243 (256)
|++++..
T Consensus 478 N~~~c~c 484 (520)
T 2z7x_B 478 NPWDCSC 484 (520)
T ss_dssp SCBCCCH
T ss_pred CCCcccC
Confidence 9998643
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=3.5e-21 Score=162.65 Aligned_cols=167 Identities=22% Similarity=0.157 Sum_probs=117.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCch----------------hccCCccCcEeeccCCcCCC
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP----------------QIGNISKLKYLGLSSNLFSG 145 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------~l~~l~~L~~L~L~~n~l~~ 145 (256)
.+++.|++++|.+.+..+ +..+++|++|++++|++++..+. ....+++|++|++++|.+++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (317)
T ss_dssp TTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS
T ss_pred CcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC
Confidence 578999999999886543 78888999999988877642110 01234566777777777776
Q ss_pred CChhhhcCCCCCCEEEcccCCCCccCCccc-cCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCccccc
Q 035658 146 AIPPQIGHLSYLKTLHLFENQLSGSIPHSL-GNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLG 224 (256)
Q Consensus 146 ~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 224 (256)
..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++. |..+.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~ 211 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQ 211 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGG
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhc
Confidence 656667777788888888888776655555 3567788888888877754 2 233477788888888887744 44477
Q ss_pred CCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 225 NLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
.+++|++|++++|.+++ +|..+..+++|+.
T Consensus 212 ~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~ 241 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241 (317)
T ss_dssp GGTTCSEEECTTSCCCE-ECTTCCCCTTCCE
T ss_pred ccCcccEEECcCCcccc-hhhHhhcCCCCCE
Confidence 77888888888888874 4556777777764
No 82
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.83 E-value=2.8e-21 Score=179.98 Aligned_cols=209 Identities=25% Similarity=0.280 Sum_probs=112.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccceeecCCCCCEEEEEcCCCCC------------------
Q 035658 33 YSMEETRALLRWKTSLQNHNNGSPLSSWTLNNVTKIGSCAWVGIHCNYGERVNSMNLTSIGL------------------ 94 (256)
Q Consensus 33 ~~~~~~~~l~~~k~~~~~~~~~~~~~~w~~~~~~~~~~c~~~gv~c~~~~~v~~l~L~~~~l------------------ 94 (256)
..+.++.++.++..+.... .+.....|. ......+.|.+..+.. ++++.+++.++++
T Consensus 129 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i 203 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDS-KTAKKQQPT---GDSTPSGTATNSAVST-PLTPKIELFANGKDEANQALLQHKKLSQYSI 203 (727)
T ss_dssp ---CCCHHHHHHHHHHHHH-HTTC--------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccc-cCcccCCCc---CCCCccccCCCceecC-CccceEEeeCCCCCcchhhHhhcCccCcccc
Confidence 4466788999998776542 233344564 2334455676655543 3444444443333
Q ss_pred ccc--------cCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCC
Q 035658 95 KGT--------LHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ 166 (256)
Q Consensus 95 ~~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 166 (256)
.+. +++..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 221 12225667777777777777776 56666667777777777777777 667777777777777777777
Q ss_pred CCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCC-CCCEEEcccCcccccCCh
Q 035658 167 LSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLS-NLAILYIYNNSLSGLIPS 245 (256)
Q Consensus 167 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~ 245 (256)
++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+.... ....+++++|.+++.+|.
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 77 56777777777777777777776 5666677777777777777777777666664432 122356777777777776
Q ss_pred hccCC
Q 035658 246 EIGNL 250 (256)
Q Consensus 246 ~l~~l 250 (256)
.+..+
T Consensus 360 ~l~~l 364 (727)
T 4b8c_D 360 ERRFI 364 (727)
T ss_dssp C----
T ss_pred cccee
Confidence 55443
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=5.9e-21 Score=160.67 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=128.6
Q ss_pred CCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCC--C--chhccCCccCcEeeccCCcCCCCChh----hhc
Q 035658 81 GERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGN--I--PPQIGNISKLKYLGLSSNLFSGAIPP----QIG 152 (256)
Q Consensus 81 ~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~ 152 (256)
..+++.|++++|.+.+..+. .+..+++|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 35889999999999866666 899999999999999997642 2 223468899999999999997 4443 357
Q ss_pred CCCCCCEEEcccCCCCccCCccccCC---CCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCC
Q 035658 153 HLSYLKTLHLFENQLSGSIPHSLGNL---TNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNL 229 (256)
Q Consensus 153 ~l~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 229 (256)
.+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 88999999999999998878777776 69999999999999 6677664 8999999999999964 33 6788999
Q ss_pred CEEEcccCcccc
Q 035658 230 AILYIYNNSLSG 241 (256)
Q Consensus 230 ~~L~l~~n~l~~ 241 (256)
+.|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999974
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=6.8e-21 Score=160.86 Aligned_cols=165 Identities=18% Similarity=0.144 Sum_probs=136.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhh-cCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQI-GHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L 160 (256)
..++.+++++|.+.+..+ ..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 99 ~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 355566666666654332 346789999999999998777789999999999999999998777776 478999999
Q ss_pred EcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 161 HLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 161 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
++++|.+++. +. ...+++|++|++++|++++. |..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 175 ~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 175 NLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999965 33 34589999999999999954 556889999999999999999 56778999999999999999998
Q ss_pred -ccCChhccCCCCCC
Q 035658 241 -GLIPSEIGNLKSLS 254 (256)
Q Consensus 241 -~~~p~~l~~l~~L~ 254 (256)
+.+|..+..+++|+
T Consensus 251 ~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQ 265 (317)
T ss_dssp HHHHHHHHHTCHHHH
T ss_pred CcCHHHHHhccccce
Confidence 66777777766554
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=5e-20 Score=145.07 Aligned_cols=147 Identities=22% Similarity=0.298 Sum_probs=129.3
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCC
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNL 181 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 181 (256)
....+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|++++..+..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3456789999999999998 556 6899999999999999876 33 478899999999999999998788899999999
Q ss_pred ceEEeecCcCcccCCcccCCCCCCCEEEccCCc-CcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 182 VTLYIYNNSLSGSIPSELGNLKSLSNLALSSNK-LSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 182 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++.. .+..+++|++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L 186 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQL 186 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEE
Confidence 999999999998888889999999999999998 65 555 6889999999999999999643 68888888764
No 86
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=1.6e-19 Score=141.67 Aligned_cols=132 Identities=27% Similarity=0.350 Sum_probs=115.2
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCch-hccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcc
Q 035658 85 NSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPP-QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLF 163 (256)
Q Consensus 85 ~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 163 (256)
+.+++++++++ .+|. .+. .++++|++++|++++..+. .+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 35666777775 5665 343 3899999999999876654 48999999999999999998889999999999999999
Q ss_pred cCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCc
Q 035658 164 ENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIP 220 (256)
Q Consensus 164 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 220 (256)
+|++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999998888889999999999999999999889999999999999999999986544
No 87
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.3e-19 Score=154.38 Aligned_cols=161 Identities=27% Similarity=0.427 Sum_probs=114.9
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.+++++|.+.+.. .+..+++|+++++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|++|++
T Consensus 178 ~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEI 250 (347)
T ss_dssp TCSEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred CCCEEEccCCcccccc---cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEEC
Confidence 4555555555554321 14555666666666666654322 66777888888888887744 33 778888888888
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|.+++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..++.+++|++|++++|++++.
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 88888753 4577788888888888888754 3577888888888888888877788888888888888888888876
Q ss_pred CChhccCCCCCCCC
Q 035658 243 IPSEIGNLKSLSNL 256 (256)
Q Consensus 243 ~p~~l~~l~~L~~L 256 (256)
.| ++.+++|++|
T Consensus 327 ~~--~~~l~~L~~L 338 (347)
T 4fmz_A 327 RP--LASLSKMDSA 338 (347)
T ss_dssp GG--GGGCTTCSEE
T ss_pred cC--hhhhhcccee
Confidence 55 6777777653
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-20 Score=168.26 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=135.0
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhc-CCCCCCEEE
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIG-HLSYLKTLH 161 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~ 161 (256)
.++.|++++|.+.+..+ ..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|+
T Consensus 100 ~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 100 SIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 45555555555554332 3468899999999999988888999999999999999999988888876 799999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc-
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS- 240 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 240 (256)
+++|.+++. | ....+++|++|++++|.+++.. ..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 176 Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 176 LQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCCCccccc-c-ccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 999999965 3 2446899999999999999654 458899999999999999994 6778899999999999999998
Q ss_pred ccCChhccCCCCC
Q 035658 241 GLIPSEIGNLKSL 253 (256)
Q Consensus 241 ~~~p~~l~~l~~L 253 (256)
+.+|..+..+++|
T Consensus 252 ~~~~~~~~~l~~L 264 (487)
T 3oja_A 252 GTLRDFFSKNQRV 264 (487)
T ss_dssp HHHHHHHTTCHHH
T ss_pred cchHHHHHhCCCC
Confidence 5666666666544
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.82 E-value=6.9e-20 Score=140.48 Aligned_cols=136 Identities=22% Similarity=0.226 Sum_probs=107.7
Q ss_pred CCCCCcEEECCCCcCC-CCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCce
Q 035658 105 SFPHLAYLDLQRNQLF-GNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVT 183 (256)
Q Consensus 105 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 183 (256)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888887 56777778888888888888888855 67788888888888888888767777777888888
Q ss_pred EEeecCcCcccC-CcccCCCCCCCEEEccCCcCcccCc---ccccCCCCCCEEEcccCccccc
Q 035658 184 LYIYNNSLSGSI-PSELGNLKSLSNLALSSNKLSGSIP---QSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 184 L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 888888887532 2677888888888888888885554 4778888888888888887743
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.6e-19 Score=149.40 Aligned_cols=160 Identities=29% Similarity=0.453 Sum_probs=138.9
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.+++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~-~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred CcccEEEccCCCcccC-h--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 4789999999998743 3 48889999999999999986544 8999999999999999985 33 489999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999999964 5688999999999999999865 578899999999999999996655 8899999999999999996
Q ss_pred cCChhccCCCCCCCC
Q 035658 242 LIPSEIGNLKSLSNL 256 (256)
Q Consensus 242 ~~p~~l~~l~~L~~L 256 (256)
. + .+..+++|+.|
T Consensus 193 l-~-~l~~l~~L~~L 205 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVL 205 (291)
T ss_dssp C-G-GGTTCTTCSEE
T ss_pred C-h-hhccCCCCCEE
Confidence 4 3 48888888754
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=4.2e-21 Score=162.88 Aligned_cols=174 Identities=22% Similarity=0.242 Sum_probs=114.2
Q ss_pred CCEEEEEcCCCCCccc-cCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCC-cCCCC-ChhhhcCCCCCC
Q 035658 82 ERVNSMNLTSIGLKGT-LHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSN-LFSGA-IPPQIGHLSYLK 158 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~ 158 (256)
.+++.|++++|.+.+. ++. .+..+++|++|++++|.+++..+..++++++|++|++++| .+++. ++..+..+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4566777777766654 444 5666777777777777776666666777777777777777 45542 455566677777
Q ss_pred EEEcccC-CCCcc-CCccccCCC-CCceEEeecC--cCc-ccCCcccCCCCCCCEEEccCCc-CcccCcccccCCCCCCE
Q 035658 159 TLHLFEN-QLSGS-IPHSLGNLT-NLVTLYIYNN--SLS-GSIPSELGNLKSLSNLALSSNK-LSGSIPQSLGNLSNLAI 231 (256)
Q Consensus 159 ~L~ls~n-~l~~~-~p~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 231 (256)
+|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 7777777 66643 455566677 7777777777 344 3445556667778888887777 66566667777778888
Q ss_pred EEcccCc-ccccCChhccCCCCCCCC
Q 035658 232 LYIYNNS-LSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 232 L~l~~n~-l~~~~p~~l~~l~~L~~L 256 (256)
|++++|. ++......++++++|++|
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 8888774 322222246667776653
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=6.3e-20 Score=156.99 Aligned_cols=185 Identities=21% Similarity=0.214 Sum_probs=139.3
Q ss_pred CCCccceeecCCC----------CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCc-hhccCCccCcE-e
Q 035658 69 GSCAWVGIHCNYG----------ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIP-PQIGNISKLKY-L 136 (256)
Q Consensus 69 ~~c~~~gv~c~~~----------~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L 136 (256)
+.|.+..|.|... .+++.|+|++|+++ .++...|.++++|++|+|++|++.+.+| .+|.+++++++ +
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 4577888888631 36899999999998 5555489999999999999999876555 46888888775 5
Q ss_pred eccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccc-------------------------cCC-CCCceEEeecCc
Q 035658 137 GLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSL-------------------------GNL-TNLVTLYIYNNS 190 (256)
Q Consensus 137 ~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~-------------------------~~l-~~L~~L~L~~n~ 190 (256)
.+++|+++...|..|..+++|++|++++|++++..+..+ ..+ ..++.|++++|+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 667789997778889999999999999998874433222 222 246677888888
Q ss_pred CcccCCcccCCCCCCCEEEccC-CcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 191 LSGSIPSELGNLKSLSNLALSS-NKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 191 l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
++. ++.......+|+++++.+ |.++...++.|.++++|++|++++|+|+...+..+.++++|+.
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence 774 444444566788888864 5666555567889999999999999999777666777666543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.8e-19 Score=163.11 Aligned_cols=154 Identities=28% Similarity=0.377 Sum_probs=130.3
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|++|++++|.+.+. +.+..+++|+.|+
T Consensus 65 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEE
Confidence 589999999999986442 7899999999999999985 33 688999999999999999853 4588999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+++
T Consensus 138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 999999864 678899999999999999987655 88999999999999999854 358889999999999999987
Q ss_pred cCChhcc
Q 035658 242 LIPSEIG 248 (256)
Q Consensus 242 ~~p~~l~ 248 (256)
.....+.
T Consensus 212 ~p~~~~~ 218 (605)
T 1m9s_A 212 KPINHQS 218 (605)
T ss_dssp CCCCCCS
T ss_pred Ccccccc
Confidence 5444333
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=4.4e-21 Score=162.79 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=133.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCC-CchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGN-IPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 160 (256)
.+++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4678888888888766544 55788888888888888755 67778888888888888888887777788888888888
Q ss_pred EcccC-CCCcc-CCccccCCCCCceEEeecC-cCccc-CCcccCCCC-CCCEEEccCC--cCc-ccCcccccCCCCCCEE
Q 035658 161 HLFEN-QLSGS-IPHSLGNLTNLVTLYIYNN-SLSGS-IPSELGNLK-SLSNLALSSN--KLS-GSIPQSLGNLSNLAIL 232 (256)
Q Consensus 161 ~ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L 232 (256)
++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 88888 57642 5666777888888888888 77753 455677788 8888888888 454 3456667778888888
Q ss_pred EcccCc-ccccCChhccCCCCCCCC
Q 035658 233 YIYNNS-LSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 233 ~l~~n~-l~~~~p~~l~~l~~L~~L 256 (256)
++++|. +++..+..+.++++|++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 888888 676667778888887754
No 95
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=4.7e-19 Score=138.98 Aligned_cols=126 Identities=29% Similarity=0.382 Sum_probs=85.1
Q ss_pred CCCccceeecCCC----------CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeec
Q 035658 69 GSCAWVGIHCNYG----------ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGL 138 (256)
Q Consensus 69 ~~c~~~gv~c~~~----------~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 138 (256)
+.|.|+.+.|... ..++.|++++|.+.+..+...+..+++|++|++++|++++..|..|.++++|++|++
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4455666665521 256677777777765443324667777777777777777666677777777777777
Q ss_pred cCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCccc
Q 035658 139 SSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGS 194 (256)
Q Consensus 139 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (256)
++|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777766666677777777777777777766667777777777777777777654
No 96
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=5.3e-19 Score=156.76 Aligned_cols=158 Identities=34% Similarity=0.501 Sum_probs=91.4
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.+++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 222 ~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 294 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294 (466)
T ss_dssp TCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCEEECCCCCcccc--h-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEc
Confidence 455555555554432 1 34555666666666666654332 5566666666666666664322 556666666666
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|++++..+ +..+++|++|++++|++++..| +..+++|++|++++|.+++. ..+..+++|++|++++|++++.
T Consensus 295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 6666664322 5566666666666666665433 45666666666666666543 3456666666666666666655
Q ss_pred CChhccCCCCCCC
Q 035658 243 IPSEIGNLKSLSN 255 (256)
Q Consensus 243 ~p~~l~~l~~L~~ 255 (256)
.| +..+++|+.
T Consensus 369 ~~--~~~l~~L~~ 379 (466)
T 1o6v_A 369 TP--LANLTRITQ 379 (466)
T ss_dssp GG--GTTCTTCCE
T ss_pred ch--hhcCCCCCE
Confidence 54 556665553
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=5.9e-19 Score=145.20 Aligned_cols=148 Identities=26% Similarity=0.315 Sum_probs=127.8
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|++.. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+++ +|.. .. ++|++|+
T Consensus 41 ~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred CcCcEEECcCCCccc-ch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 578999999999874 43 58889999999999999986544 9999999999999999995 4433 33 8999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++. +.+..+++|++|++++|++++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 113 L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 113 LDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 999999963 4588999999999999999864 3 688999999999999999866 678899999999999999986
Q ss_pred cC
Q 035658 242 LI 243 (256)
Q Consensus 242 ~~ 243 (256)
..
T Consensus 187 ~~ 188 (263)
T 1xeu_A 187 EP 188 (263)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=8.4e-19 Score=149.39 Aligned_cols=144 Identities=28% Similarity=0.415 Sum_probs=103.6
Q ss_pred cCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCc
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLV 182 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 182 (256)
+..+++|++|++++|.+.+. +. +..+++|+++++++|.+++..+ +..+++|++|++++|++++.. . +..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~ 246 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLT 246 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCC
T ss_pred hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCC
Confidence 44455555555555555432 22 5555666666666666553322 667788888888888887543 3 77888888
Q ss_pred eEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 183 TLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 183 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
+|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..++++++|++|
T Consensus 247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 888888888753 4678888999999999988854 457888999999999999998888888888888754
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.79 E-value=1.2e-19 Score=136.30 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=76.0
Q ss_pred CCCcEEECCCCcCC-CCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEE
Q 035658 107 PHLAYLDLQRNQLF-GNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLY 185 (256)
Q Consensus 107 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 185 (256)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555556666666666666666643 4556666666666666666654555555566666666
Q ss_pred eecCcCccc-CCcccCCCCCCCEEEccCCcCcccCc---ccccCCCCCCEEEcc
Q 035658 186 IYNNSLSGS-IPSELGNLKSLSNLALSSNKLSGSIP---QSLGNLSNLAILYIY 235 (256)
Q Consensus 186 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 235 (256)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 22455666666666666666664443 355666666666654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.3e-18 Score=158.78 Aligned_cols=160 Identities=29% Similarity=0.456 Sum_probs=138.5
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|+++++.+.. ++ .+..+++|+.|+|++|++.+..+ +..+++|++|+|++|.+++ +| .+..+++|++|+
T Consensus 43 ~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Ch--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 468889999999874 33 58889999999999999986544 8999999999999999985 34 788999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|++++|.+++
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999853 4588999999999999999865 578899999999999999997666 8899999999999999997
Q ss_pred cCChhccCCCCCCCC
Q 035658 242 LIPSEIGNLKSLSNL 256 (256)
Q Consensus 242 ~~p~~l~~l~~L~~L 256 (256)
. +.+..+++|+.|
T Consensus 190 l--~~l~~l~~L~~L 202 (605)
T 1m9s_A 190 L--RALAGLKNLDVL 202 (605)
T ss_dssp C--GGGTTCTTCSEE
T ss_pred C--hHHccCCCCCEE
Confidence 5 458888888754
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=6.8e-19 Score=144.81 Aligned_cols=158 Identities=24% Similarity=0.315 Sum_probs=131.9
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.++++++.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3455667777776433 46788999999999999984 55 68899999999999999995544 999999999999
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|++++ +|.. .. ++|++|++++|++++. + .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 9999995 4443 33 8999999999999964 3 689999999999999999864 3 688999999999999999977
Q ss_pred CChhccCCCCCCCC
Q 035658 243 IPSEIGNLKSLSNL 256 (256)
Q Consensus 243 ~p~~l~~l~~L~~L 256 (256)
..+..+++|+.|
T Consensus 166 --~~l~~l~~L~~L 177 (263)
T 1xeu_A 166 --GGLTRLKKVNWI 177 (263)
T ss_dssp --TTSTTCCCCCEE
T ss_pred --HHhccCCCCCEE
Confidence 668888888753
No 102
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.79 E-value=2.8e-18 Score=132.66 Aligned_cols=138 Identities=27% Similarity=0.295 Sum_probs=110.4
Q ss_pred CCCCccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCC
Q 035658 68 IGSCAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAI 147 (256)
Q Consensus 68 ~~~c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 147 (256)
.+.|.|.++.|. ++++. .+|. . ..++|++|++++|++.+..+..+..+++|++|++++|.+++..
T Consensus 4 ~C~C~~~~l~~~-----------~~~l~-~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 4 RCSCSGTEIRCN-----------SKGLT-SVPT-G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TCEEETTEEECC-----------SSCCS-SCCT-T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEeCCCEEEec-----------CCCCc-cCCC-C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 345777777665 34444 3333 2 2368999999999998776777889999999999999999777
Q ss_pred hhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCc
Q 035658 148 PPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIP 220 (256)
Q Consensus 148 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 220 (256)
+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7778899999999999999997766678889999999999999986666667889999999999999886544
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.79 E-value=5.1e-19 Score=135.59 Aligned_cols=136 Identities=24% Similarity=0.267 Sum_probs=120.6
Q ss_pred CCEEEEEcCCCCCc-cccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLK-GTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 160 (256)
.+++.|++++|.+. +.++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 57999999999998 77887 789999999999999999865 778999999999999999998788888889999999
Q ss_pred EcccCCCCccC-CccccCCCCCceEEeecCcCcccCC---cccCCCCCCCEEEccCCcCcccCcc
Q 035658 161 HLFENQLSGSI-PHSLGNLTNLVTLYIYNNSLSGSIP---SELGNLKSLSNLALSSNKLSGSIPQ 221 (256)
Q Consensus 161 ~ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~ 221 (256)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. ..|+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999999642 2788999999999999999996655 47899999999999999987 4443
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.5e-18 Score=135.00 Aligned_cols=127 Identities=27% Similarity=0.321 Sum_probs=110.7
Q ss_pred EEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccC
Q 035658 86 SMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFEN 165 (256)
Q Consensus 86 ~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 165 (256)
.+++++++++ .+|. .+ .+++++|++++|+++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4666677776 4555 33 358999999999998 67889999999999999999999888888999999999999999
Q ss_pred CCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcc
Q 035658 166 QLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSG 217 (256)
Q Consensus 166 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 217 (256)
++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998888889999999999999999997666678899999999999999864
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.9e-18 Score=153.20 Aligned_cols=158 Identities=31% Similarity=0.434 Sum_probs=93.9
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
+++.|++++|.+.+..+ +..+++|++|++++|++.+. +.+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 200 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 200 NLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 44445555444443221 34455555555555555432 245556666666666666664332 566666666666
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccccc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGL 242 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (256)
++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++..| +..+++|++|++++|.+++.
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 6666664322 5666677777777776664432 5666777777777777765544 56677777777777777754
Q ss_pred CChhccCCCCCCC
Q 035658 243 IPSEIGNLKSLSN 255 (256)
Q Consensus 243 ~p~~l~~l~~L~~ 255 (256)
+.++++++|+.
T Consensus 347 --~~l~~l~~L~~ 357 (466)
T 1o6v_A 347 --SSLANLTNINW 357 (466)
T ss_dssp --GGGTTCTTCCE
T ss_pred --hhhccCCCCCE
Confidence 35666776664
No 106
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.78 E-value=4.1e-18 Score=131.70 Aligned_cols=133 Identities=24% Similarity=0.285 Sum_probs=117.0
Q ss_pred CcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeec
Q 035658 109 LAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYN 188 (256)
Q Consensus 109 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 188 (256)
.+.++++++++. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467899999987 456544 37999999999999977777889999999999999999977677789999999999999
Q ss_pred CcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCC
Q 035658 189 NSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIP 244 (256)
Q Consensus 189 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 244 (256)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99997777778999999999999999997777778899999999999999987554
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.1e-18 Score=157.94 Aligned_cols=160 Identities=27% Similarity=0.409 Sum_probs=88.5
Q ss_pred cccee-ecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhh
Q 035658 72 AWVGI-HCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQ 150 (256)
Q Consensus 72 ~~~gv-~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 150 (256)
.|.++ .|.. .+++.|++++|++++ +|. .+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 56666 4532 356666666666654 443 22 245555555555554 333 224444455554444443 333
Q ss_pred hc------------------CCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccC
Q 035658 151 IG------------------HLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSS 212 (256)
Q Consensus 151 ~~------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 212 (256)
+. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|++++
T Consensus 118 l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 118 LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 22 34555555555555553 333 34566666666666664 444 43 6777777777
Q ss_pred CcCcccCcccccCCCCC-------CEEEcccCcccccCChhccCCCCCCC
Q 035658 213 NKLSGSIPQSLGNLSNL-------AILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 213 n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
|.++ .+|. +.. +| +.|++++|.|+ .+|..+.++++|+.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence 7776 4454 443 56 77888888887 45666666777764
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4.7e-18 Score=153.77 Aligned_cols=148 Identities=23% Similarity=0.333 Sum_probs=118.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 466777777777765 444 333 78888888888875 555 57889999999999985 555 578999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCC-------CEEEccCCcCcccCcccccCCCCCCEEEc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSL-------SNLALSSNKLSGSIPQSLGNLSNLAILYI 234 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 234 (256)
+++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| ++|++++|.++ .+|..+..+++|+.|++
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 99999996 676 65 89999999999999 6666 554 77 99999999999 57877888999999999
Q ss_pred ccCcccccCChhccCCC
Q 035658 235 YNNSLSGLIPSEIGNLK 251 (256)
Q Consensus 235 ~~n~l~~~~p~~l~~l~ 251 (256)
++|.+++.+|..+..++
T Consensus 238 ~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSSCCHHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHhh
Confidence 99999999888887654
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=1e-17 Score=148.30 Aligned_cols=65 Identities=28% Similarity=0.229 Sum_probs=31.7
Q ss_pred CCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhc
Q 035658 177 NLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEI 247 (256)
Q Consensus 177 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 247 (256)
.+++|+.|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++..+..+
T Consensus 189 ~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 333444444444444322 24445555555555555554 33 4555556666666666655443333
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=1.7e-17 Score=146.78 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=121.3
Q ss_pred CccceeecCCCCCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhh
Q 035658 71 CAWVGIHCNYGERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQ 150 (256)
Q Consensus 71 c~~~gv~c~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 150 (256)
|...++......+++.|++++|.+++. .+..+++|++|++++|++++ ++ ++.+++|++|++++|.+++. +
T Consensus 74 n~l~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-- 143 (457)
T 3bz5_A 74 NNITTLDLSQNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-- 143 (457)
T ss_dssp SCCSCCCCTTCTTCSEEECCSSCCSCC----CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--
T ss_pred CcCCeEccccCCCCCEEECcCCCCcee----ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--
Confidence 444444333345788999999988863 37788889999999998886 34 78888888888888888864 2
Q ss_pred hcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCC
Q 035658 151 IGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLA 230 (256)
Q Consensus 151 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 230 (256)
++.+++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|++|++++|.+++. .++.+++|+
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~ 215 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLT 215 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCS
T ss_pred cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCC
Confidence 677888888888888554444 36677888888888888875 34 67778888888888888754 367778888
Q ss_pred EEEcccCcccccCChhccCCCCCCC
Q 035658 231 ILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 231 ~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+|++++|++++ +| ++.+++|+.
T Consensus 216 ~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 216 FLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCSE
T ss_pred EEECcCCcccc-cC--ccccCCCCE
Confidence 88888888886 34 666666654
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.77 E-value=9.6e-19 Score=131.41 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=114.8
Q ss_pred CCEEEEEcCCCCCc-cccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEE
Q 035658 82 ERVNSMNLTSIGLK-GTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTL 160 (256)
Q Consensus 82 ~~v~~l~L~~~~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 160 (256)
.+++.+++++|++. +.++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 47899999999998 78887 889999999999999999865 778999999999999999998789988889999999
Q ss_pred EcccCCCCcc-CCccccCCCCCceEEeecCcCcccCC---cccCCCCCCCEEEccC
Q 035658 161 HLFENQLSGS-IPHSLGNLTNLVTLYIYNNSLSGSIP---SELGNLKSLSNLALSS 212 (256)
Q Consensus 161 ~ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~ 212 (256)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999963 34788999999999999999997655 4788999999999863
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=7.7e-18 Score=132.21 Aligned_cols=126 Identities=29% Similarity=0.344 Sum_probs=72.4
Q ss_pred EEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCc
Q 035658 111 YLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNS 190 (256)
Q Consensus 111 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 190 (256)
.+++++|+++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555555 3444332 45666666666665 445555666666666666666665555555666666666666666
Q ss_pred CcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCccc
Q 035658 191 LSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 191 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555555566666666666666665444445555666666666666553
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=2.4e-20 Score=161.48 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=104.9
Q ss_pred CCEEEEEcCCCCCcc----ccCCcccCCCCCCcEEECCCCcCCCCCchh----ccCC---------ccCcEeeccCCcCC
Q 035658 82 ERVNSMNLTSIGLKG----TLHDFSFSSFPHLAYLDLQRNQLFGNIPPQ----IGNI---------SKLKYLGLSSNLFS 144 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~L~~n~l~ 144 (256)
.+++.|++++|.+.+ .++. .+..+++|++|++++|.+++..+.. +..+ ++|++|++++|+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 466777777777665 2444 5566677777777777665332222 2223 67777777777765
Q ss_pred -CCCh---hhhcCCCCCCEEEcccCCCCc-----cCCccccCCCCCceEEeecCcCc----ccCCcccCCCCCCCEEEcc
Q 035658 145 -GAIP---PQIGHLSYLKTLHLFENQLSG-----SIPHSLGNLTNLVTLYIYNNSLS----GSIPSELGNLKSLSNLALS 211 (256)
Q Consensus 145 -~~~p---~~~~~l~~L~~L~ls~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~ 211 (256)
+.++ ..+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 2333 345566677777777776662 23335666677777777777764 3455566667777777777
Q ss_pred CCcCccc----Cccccc--CCCCCCEEEcccCcccc----cCChhc-cCCCCCCC
Q 035658 212 SNKLSGS----IPQSLG--NLSNLAILYIYNNSLSG----LIPSEI-GNLKSLSN 255 (256)
Q Consensus 212 ~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~p~~l-~~l~~L~~ 255 (256)
+|.+++. ++..+. .+++|++|++++|.+++ .+|..+ .++++|++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 7776654 344442 36677777777777765 355555 44566654
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.1e-19 Score=167.37 Aligned_cols=145 Identities=24% Similarity=0.380 Sum_probs=117.3
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
..++.|+|++|.+. .++. .+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 57889999999988 6776 5668999999999999998 78889999999999999999999 7799999999999999
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCC-CCEEEccCCcCcccCcccccCCCCCCEEEcccC
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKS-LSNLALSSNKLSGSIPQSLGNLSNLAILYIYNN 237 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 237 (256)
|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..... +..+++++|.+++.+|..+ +.|+++.|
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n 369 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTD 369 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecc
Confidence 9999998 67888999999999999999999888877654322 2347889999998877644 45566665
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=9.1e-20 Score=157.85 Aligned_cols=175 Identities=19% Similarity=0.216 Sum_probs=121.9
Q ss_pred CCEEEEEcCCCC---CccccCCc------ccCCCCCCcEEECCCCcCCC----CCchhccCCccCcEeeccCCcCCCCCh
Q 035658 82 ERVNSMNLTSIG---LKGTLHDF------SFSSFPHLAYLDLQRNQLFG----NIPPQIGNISKLKYLGLSSNLFSGAIP 148 (256)
Q Consensus 82 ~~v~~l~L~~~~---l~~~~~~~------~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p 148 (256)
.+++.|++++|. +.+.+|.. .+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 567788887753 34444431 23677888888888888876 356677778888888888888764333
Q ss_pred hhh----cCC---------CCCCEEEcccCCCC-ccCC---ccccCCCCCceEEeecCcCcc-----cCCcccCCCCCCC
Q 035658 149 PQI----GHL---------SYLKTLHLFENQLS-GSIP---HSLGNLTNLVTLYIYNNSLSG-----SIPSELGNLKSLS 206 (256)
Q Consensus 149 ~~~----~~l---------~~L~~L~ls~n~l~-~~~p---~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~ 206 (256)
..+ ..+ ++|++|++++|+++ +.++ ..+..+++|++|++++|.++. ..+..+..+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 333 333 78888888888886 3333 356677888888888888873 2333677788888
Q ss_pred EEEccCCcCc----ccCcccccCCCCCCEEEcccCccccc----CChhcc--CCCCCCCC
Q 035658 207 NLALSSNKLS----GSIPQSLGNLSNLAILYIYNNSLSGL----IPSEIG--NLKSLSNL 256 (256)
Q Consensus 207 ~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~--~l~~L~~L 256 (256)
+|++++|.++ ..+|..+..+++|++|++++|.+++. ++..+. .+++|++|
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 8888888885 45677788888888888888888765 455553 36777653
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.2e-20 Score=169.28 Aligned_cols=167 Identities=22% Similarity=0.242 Sum_probs=133.5
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCc-------------CCCCCchhccCC-------------------
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQ-------------LFGNIPPQIGNI------------------- 130 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l------------------- 130 (256)
+++.|++++|.+. .+|. .++.+++|+.|++++|. ..+.+|..++.+
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TSSSCCCCHHHHH-HHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 4456677777765 6666 77888888888886664 333333332211
Q ss_pred -------------ccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCc
Q 035658 131 -------------SKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPS 197 (256)
Q Consensus 131 -------------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 197 (256)
..|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|..+..+++|++|+|++|.+++ +|
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred hhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence 147789999999995 666 999999999999999999 789999999999999999999996 66
Q ss_pred ccCCCCCCCEEEccCCcCcccC-cccccCCCCCCEEEcccCcccccCCh---hccCCCCCCCC
Q 035658 198 ELGNLKSLSNLALSSNKLSGSI-PQSLGNLSNLAILYIYNNSLSGLIPS---EIGNLKSLSNL 256 (256)
Q Consensus 198 ~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L 256 (256)
.+..+++|++|++++|.+++.. |..++.+++|+.|++++|.+++.+|. .+..+++|+.|
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 8999999999999999999876 99999999999999999999987653 23457777654
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=4.8e-19 Score=152.17 Aligned_cols=173 Identities=19% Similarity=0.227 Sum_probs=134.6
Q ss_pred CCEEEEEcCCCCCccccC----CcccCCCC-CCcEEECCCCcCCCCCchhccCC-----ccCcEeeccCCcCCCCChhhh
Q 035658 82 ERVNSMNLTSIGLKGTLH----DFSFSSFP-HLAYLDLQRNQLFGNIPPQIGNI-----SKLKYLGLSSNLFSGAIPPQI 151 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~p~~~ 151 (256)
..++.|++++|.+.+..+ . .+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 459999999999986544 4 678888 99999999999998777777665 999999999999997777644
Q ss_pred ----cCC-CCCCEEEcccCCCCccCCccc----cC-CCCCceEEeecCcCcccCC----cccCCCC-CCCEEEccCCcCc
Q 035658 152 ----GHL-SYLKTLHLFENQLSGSIPHSL----GN-LTNLVTLYIYNNSLSGSIP----SELGNLK-SLSNLALSSNKLS 216 (256)
Q Consensus 152 ----~~l-~~L~~L~ls~n~l~~~~p~~~----~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~ 216 (256)
..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+ ..+...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 444 899999999999986655443 34 3699999999999986443 3344555 9999999999998
Q ss_pred ccCcccc----cCC-CCCCEEEcccCccccc----CChhccC-CCCCCC
Q 035658 217 GSIPQSL----GNL-SNLAILYIYNNSLSGL----IPSEIGN-LKSLSN 255 (256)
Q Consensus 217 ~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~p~~l~~-l~~L~~ 255 (256)
+..+..+ ... ++|++|++++|.+++. ++..+.. .++|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 7666443 445 5999999999999874 3444544 346664
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=3.9e-19 Score=152.73 Aligned_cols=173 Identities=23% Similarity=0.261 Sum_probs=133.3
Q ss_pred CEEEEEcCCCCCccccCCcccCCC-----CCCcEEECCCCcCCCCCchhc----cCC-ccCcEeeccCCcCCCCChhhhc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSF-----PHLAYLDLQRNQLFGNIPPQI----GNI-SKLKYLGLSSNLFSGAIPPQIG 152 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~p~~~~ 152 (256)
+++.|++++|.+.+..+. .+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 799999999999876544 45443 899999999999987766644 444 8999999999999977765543
Q ss_pred ----C-CCCCCEEEcccCCCCccC----CccccCCC-CCceEEeecCcCcccCCccc----CCC-CCCCEEEccCCcCcc
Q 035658 153 ----H-LSYLKTLHLFENQLSGSI----PHSLGNLT-NLVTLYIYNNSLSGSIPSEL----GNL-KSLSNLALSSNKLSG 217 (256)
Q Consensus 153 ----~-l~~L~~L~ls~n~l~~~~----p~~~~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~ 217 (256)
. .++|++|++++|.+++.. +..+...+ +|++|++++|++++..+..+ ... ++|++|++++|.+++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 3 369999999999998543 34445565 99999999999987665443 445 599999999999986
Q ss_pred c----CcccccC-CCCCCEEEcccCcccccCChh----ccCCCCCCCC
Q 035658 218 S----IPQSLGN-LSNLAILYIYNNSLSGLIPSE----IGNLKSLSNL 256 (256)
Q Consensus 218 ~----~~~~~~~-l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L 256 (256)
. ++..+.. .++|++|++++|.+++..+.. +..+++|++|
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 3 4445555 459999999999999766533 3556666643
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.72 E-value=8.4e-18 Score=129.89 Aligned_cols=133 Identities=22% Similarity=0.237 Sum_probs=100.5
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCC-ccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCC
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNI-SKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTN 180 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 180 (256)
.+.++++|++|++++|+++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 45667788888888888874 454 4444 4888888888888854 56788888888888888888554455578888
Q ss_pred CceEEeecCcCcccCCc--ccCCCCCCCEEEccCCcCcccCccc----ccCCCCCCEEEcccCccc
Q 035658 181 LVTLYIYNNSLSGSIPS--ELGNLKSLSNLALSSNKLSGSIPQS----LGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 181 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~ 240 (256)
|++|++++|.+. .+|. .+..+++|++|++++|.++ ..|.. +..+++|+.|++++|.+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888886 4454 6778888888888888887 44543 778888888888888765
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=5.3e-18 Score=149.97 Aligned_cols=125 Identities=29% Similarity=0.345 Sum_probs=61.5
Q ss_pred cEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecC
Q 035658 110 AYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189 (256)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (256)
++|++++|++++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++++ +|.. .++|++|++++|
T Consensus 74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNN 141 (454)
T ss_dssp SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSS
T ss_pred CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCC
Confidence 555555555443 2221 2456666666666664 3432 2344455554444442 1111 135666666666
Q ss_pred cCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCC
Q 035658 190 SLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLS 254 (256)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 254 (256)
.+++ +| .+.++++|++|++++|.+++ +|..+ ++|++|++++|.+++ +| .++++++|+
T Consensus 142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~ 198 (454)
T 1jl5_A 142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLT 198 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCC
Confidence 6653 44 35666666666666666553 33322 345555555555554 23 355555544
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=5.9e-16 Score=136.82 Aligned_cols=141 Identities=33% Similarity=0.455 Sum_probs=94.1
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEE
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLH 161 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 161 (256)
.+++.+++++|.+.+ ++. ..++|++|++++|++++ +| .++++++|++|++++|.+++ +|..+ ++|++|+
T Consensus 111 ~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEE
T ss_pred CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEE
Confidence 345555555555542 111 01567777777777764 55 47777777777777777774 44332 4777777
Q ss_pred cccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccc
Q 035658 162 LFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 162 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+++|++++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.++ .+|+ ++.+++|++|++++|++++
T Consensus 180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 77777775 45 47777778888888877774 3432 247788888888777 5553 7788888888888888875
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.69 E-value=4.7e-20 Score=145.31 Aligned_cols=151 Identities=24% Similarity=0.326 Sum_probs=98.7
Q ss_pred CEEEEEcCCCCCccccCC-----cccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCC
Q 035658 83 RVNSMNLTSIGLKGTLHD-----FSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYL 157 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 157 (256)
.++.++++.+.+.|.++. ..+..+++|++|++++|++++ +| .+.++++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 445555555555554332 146667777777777777765 55 6677777777777777777 566666666777
Q ss_pred CEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCC-cccCCCCCCCEEEccCCcCcccCcc----------cccCC
Q 035658 158 KTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIP-SELGNLKSLSNLALSSNKLSGSIPQ----------SLGNL 226 (256)
Q Consensus 158 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~~~~l 226 (256)
++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 777777777774 33 46667777777777777764322 3566777777777777777655443 25667
Q ss_pred CCCCEEEcccCccc
Q 035658 227 SNLAILYIYNNSLS 240 (256)
Q Consensus 227 ~~L~~L~l~~n~l~ 240 (256)
++|+.|| +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 7777765 55554
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.3e-16 Score=123.18 Aligned_cols=127 Identities=21% Similarity=0.222 Sum_probs=105.5
Q ss_pred hccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCC
Q 035658 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSL 205 (256)
Q Consensus 126 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 205 (256)
.+..+++|++|++++|.++ .+|......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4677899999999999999 4555433344999999999999965 678999999999999999996655556899999
Q ss_pred CEEEccCCcCcccCcc--cccCCCCCCEEEcccCcccccCCh---hccCCCCCCCC
Q 035658 206 SNLALSSNKLSGSIPQ--SLGNLSNLAILYIYNNSLSGLIPS---EIGNLKSLSNL 256 (256)
Q Consensus 206 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L 256 (256)
++|++++|.++ .+|. .+..+++|+.|++++|.++...+. .+..+++|+.|
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence 99999999997 4555 788999999999999999854332 48888888754
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.4e-18 Score=153.43 Aligned_cols=39 Identities=28% Similarity=0.204 Sum_probs=18.9
Q ss_pred CCCCCEEEccCCcCcc----cCcccccCCCCCCEEEcccCccc
Q 035658 202 LKSLSNLALSSNKLSG----SIPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 202 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
.++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 3445555555555443 33444444455555555555544
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=2.4e-15 Score=137.46 Aligned_cols=68 Identities=31% Similarity=0.450 Sum_probs=41.2
Q ss_pred CCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 179 TNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
++|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence 445566666665553 33 23456666666666666 3333 4566777777777777 45666777777664
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=6.6e-16 Score=141.21 Aligned_cols=110 Identities=28% Similarity=0.345 Sum_probs=84.8
Q ss_pred ccCcEeeccCCcCCCCChhhhc-----------------CCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcc
Q 035658 131 SKLKYLGLSSNLFSGAIPPQIG-----------------HLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSG 193 (256)
Q Consensus 131 ~~L~~L~L~~n~l~~~~p~~~~-----------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (256)
++|++|++++|.+++ +|..+. .+++|++|++++|.+++ +| ..+++|++|++++|.++
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~- 254 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT- 254 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-
T ss_pred CCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-
Confidence 566666666666663 222211 12668888888888874 45 45688999999999999
Q ss_pred cCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCC
Q 035658 194 SIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNL 250 (256)
Q Consensus 194 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 250 (256)
.+|. .+++|++|++++|.++ .+|..+.++++|+.|++++|.+++..|..+.++
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 5565 6789999999999999 778889999999999999999998877766544
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=1.1e-15 Score=117.36 Aligned_cols=109 Identities=26% Similarity=0.265 Sum_probs=92.5
Q ss_pred CCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEee
Q 035658 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIY 187 (256)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 187 (256)
..+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999987 4666553 789999999999998888889999999999999999997777778889999999999
Q ss_pred cCcCcccCCcccCCCCCCCEEEccCCcCcccC
Q 035658 188 NNSLSGSIPSELGNLKSLSNLALSSNKLSGSI 219 (256)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 219 (256)
+|++++..+..+..+++|++|++++|.++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999776667889999999999999887543
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.65 E-value=1.9e-19 Score=141.78 Aligned_cols=149 Identities=24% Similarity=0.328 Sum_probs=121.7
Q ss_pred cCCCCCCcEEECCCCcCCCCCch------hccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCcccc
Q 035658 103 FSSFPHLAYLDLQRNQLFGNIPP------QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLG 176 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 176 (256)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666777777777766665 88999999999999999985 66 8889999999999999998 6777777
Q ss_pred CCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCc-ccccCCCCCCEEEcccCcccccCChh---------
Q 035658 177 NLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIP-QSLGNLSNLAILYIYNNSLSGLIPSE--------- 246 (256)
Q Consensus 177 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~--------- 246 (256)
.+++|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 78899999999999986 44 67888999999999999985433 57888999999999999998776542
Q ss_pred -ccCCCCCCCC
Q 035658 247 -IGNLKSLSNL 256 (256)
Q Consensus 247 -l~~l~~L~~L 256 (256)
+..+++|+.|
T Consensus 169 ~~~~l~~L~~L 179 (198)
T 1ds9_A 169 VVKRLPNLKKL 179 (198)
T ss_dssp HHHHCSSCSEE
T ss_pred HHHhCCCcEEE
Confidence 7778887753
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.65 E-value=1.8e-15 Score=116.26 Aligned_cols=106 Identities=21% Similarity=0.258 Sum_probs=92.7
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEccc
Q 035658 85 NSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFE 164 (256)
Q Consensus 85 ~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 164 (256)
+.+++++++++ .+|. .+ .+++++|++++|++++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35677788877 4555 33 37899999999999988899999999999999999999987777889999999999999
Q ss_pred CCCCccCCccccCCCCCceEEeecCcCccc
Q 035658 165 NQLSGSIPHSLGNLTNLVTLYIYNNSLSGS 194 (256)
Q Consensus 165 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (256)
|++++..+..|..+++|++|++++|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999977777799999999999999999854
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=4e-16 Score=132.16 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=91.2
Q ss_pred CCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCC-EEEccCCcCcccCcccccCCCCCCEE
Q 035658 154 LSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLS-NLALSSNKLSGSIPQSLGNLSNLAIL 232 (256)
Q Consensus 154 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L 232 (256)
+++|+.+++++|+++...+..|.++++|+.+++.+| +....+..|.++++|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999777778999999999999998 7767777899999999 999988 7776778999999999999
Q ss_pred EcccCcccccCChhccCCCCCCCC
Q 035658 233 YIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 233 ~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
++++|.++.+.+..|.++++|+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 999999998888999999999864
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6.9e-16 Score=139.84 Aligned_cols=122 Identities=25% Similarity=0.296 Sum_probs=108.4
Q ss_pred CCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEee
Q 035658 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIY 187 (256)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 187 (256)
.|+.|++++|.+++ +|. ++.+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999986 676 999999999999999999 889999999999999999999996 66 89999999999999
Q ss_pred cCcCcccC-CcccCCCCCCCEEEccCCcCcccCcc---cccCCCCCCEEEc
Q 035658 188 NNSLSGSI-PSELGNLKSLSNLALSSNKLSGSIPQ---SLGNLSNLAILYI 234 (256)
Q Consensus 188 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l 234 (256)
+|.+++.. |..+..+++|++|++++|.+++..|. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999876 89999999999999999999866542 2344788998864
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=9.4e-18 Score=148.07 Aligned_cols=158 Identities=23% Similarity=0.265 Sum_probs=80.9
Q ss_pred CEEEEEcCCCCCcc----ccCCcccCCCCCCcEEECCCCcCCCCCchhc-----cCCccCcEeeccCCcCCCCC----hh
Q 035658 83 RVNSMNLTSIGLKG----TLHDFSFSSFPHLAYLDLQRNQLFGNIPPQI-----GNISKLKYLGLSSNLFSGAI----PP 149 (256)
Q Consensus 83 ~v~~l~L~~~~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~----p~ 149 (256)
+++.|++++|.+.+ .++. .+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++.. +.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 57777777777763 3344 66677777777777777653322222 22445666666666665432 34
Q ss_pred hhcCCCCCCEEEcccCCCCccCCcccc-----CCCCCceEEeecCcCccc----CCcccCCCCCCCEEEccCCcCcccC-
Q 035658 150 QIGHLSYLKTLHLFENQLSGSIPHSLG-----NLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLALSSNKLSGSI- 219 (256)
Q Consensus 150 ~~~~l~~L~~L~ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~- 219 (256)
.+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 444556666666666665532222221 133555555555555432 2333444455555555555544321
Q ss_pred ----cccccCCCCCCEEEcccCcccc
Q 035658 220 ----PQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 220 ----~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
+..+..+++|++|++++|.+++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCH
Confidence 1112234445555555554443
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=7.1e-16 Score=131.77 Aligned_cols=167 Identities=17% Similarity=0.060 Sum_probs=121.9
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCCh-hhhcCCCCCCE-EEc
Q 035658 85 NSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIP-PQIGHLSYLKT-LHL 162 (256)
Q Consensus 85 ~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~l 162 (256)
+.++.++++++ .+|. .+ .+++++|+|++|+|+...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 35778888888 5665 44 3689999999999996556689999999999999999876554 56889998876 566
Q ss_pred ccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCC--------------------------CCCCEEEccCCcCc
Q 035658 163 FENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNL--------------------------KSLSNLALSSNKLS 216 (256)
Q Consensus 163 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--------------------------~~L~~L~L~~n~l~ 216 (256)
.+|+++...|..|..+++|++|++++|++.+..+..+... ..+++|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 7899998888899999999999999999875433322222 24566777777776
Q ss_pred ccCcccccCCCCCCEEEccc-CcccccCChhccCCCCCCCC
Q 035658 217 GSIPQSLGNLSNLAILYIYN-NSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L 256 (256)
...+..| ...+|+++++.+ |.++...++.|.++++|++|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 4333333 345677777764 55665555567777777653
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=2.8e-15 Score=115.62 Aligned_cols=106 Identities=25% Similarity=0.310 Sum_probs=92.2
Q ss_pred cEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecC
Q 035658 110 AYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNN 189 (256)
Q Consensus 110 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n 189 (256)
+.+++++|++. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899999996 6776654 89999999999999888889999999999999999999766666789999999999999
Q ss_pred cCcccCCcccCCCCCCCEEEccCCcCccc
Q 035658 190 SLSGSIPSELGNLKSLSNLALSSNKLSGS 218 (256)
Q Consensus 190 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 218 (256)
++++..+..+..+++|++|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99976666688999999999999998743
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=4.9e-15 Score=114.22 Aligned_cols=106 Identities=24% Similarity=0.300 Sum_probs=93.5
Q ss_pred EEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEccc
Q 035658 85 NSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFE 164 (256)
Q Consensus 85 ~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 164 (256)
+.++++++++. .+|. .+. ++|++|++++|++.+..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 57899999986 5666 443 8999999999999988899999999999999999999977667789999999999999
Q ss_pred CCCCccCCccccCCCCCceEEeecCcCccc
Q 035658 165 NQLSGSIPHSLGNLTNLVTLYIYNNSLSGS 194 (256)
Q Consensus 165 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (256)
|++++..+..|..+++|++|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999976666699999999999999999843
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=2.4e-16 Score=135.88 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=122.7
Q ss_pred CCEEEEEcCCCCCccccCC---cccC-CCCCCcEEECCCCcCCCCCchhc-cCCccCcEeeccCCcCCCCChhhh-----
Q 035658 82 ERVNSMNLTSIGLKGTLHD---FSFS-SFPHLAYLDLQRNQLFGNIPPQI-GNISKLKYLGLSSNLFSGAIPPQI----- 151 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~---~~~~-~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~----- 151 (256)
..++.+++++|.++..... ..+. ..++|++|++++|.++......+ ..+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4788999999998753222 0222 33689999999999875433333 346789999999999975444443
Q ss_pred cCCCCCCEEEcccCCCCcc----CCccccCCCCCceEEeecCcCccc----CCcccCCCCCCCEEEccCCcCccc----C
Q 035658 152 GHLSYLKTLHLFENQLSGS----IPHSLGNLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLALSSNKLSGS----I 219 (256)
Q Consensus 152 ~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~ 219 (256)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3568899999999998742 344557788999999999998753 345567778999999999999753 3
Q ss_pred cccccCCCCCCEEEcccCcccccCChhccC
Q 035658 220 PQSLGNLSNLAILYIYNNSLSGLIPSEIGN 249 (256)
Q Consensus 220 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 249 (256)
+..+...++|++|++++|.|++.....+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 344556789999999999998655444443
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=1.5e-13 Score=116.93 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=92.1
Q ss_pred cEEECCCC-cCCCCCchhccCCccCcEeeccC-CcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEee
Q 035658 110 AYLDLQRN-QLFGNIPPQIGNISKLKYLGLSS-NLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIY 187 (256)
Q Consensus 110 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 187 (256)
..++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 887 5788 99999999999996 99998888899999999999999999998888899999999999999
Q ss_pred cCcCcccCCcccCCCCCCCEEEccCCcCccc
Q 035658 188 NNSLSGSIPSELGNLKSLSNLALSSNKLSGS 218 (256)
Q Consensus 188 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 218 (256)
+|++++..+..+..++ |++|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999966665666555 99999999998743
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=2e-13 Score=116.14 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=93.2
Q ss_pred CCccceeecCCCCCEEEEEcCCC-CCccccCCcccCCCCCCcEEECCC-CcCCCCCchhccCCccCcEeeccCCcCCCCC
Q 035658 70 SCAWVGIHCNYGERVNSMNLTSI-GLKGTLHDFSFSSFPHLAYLDLQR-NQLFGNIPPQIGNISKLKYLGLSSNLFSGAI 147 (256)
Q Consensus 70 ~c~~~gv~c~~~~~v~~l~L~~~-~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 147 (256)
.|.|..+.|. ++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..
T Consensus 7 ~C~~~~v~~~-----------~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRCT-----------RDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEECC-----------SSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEcC-----------CCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 4777666654 44 566 4666 88899999999996 9999888889999999999999999999999
Q ss_pred hhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcc
Q 035658 148 PPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSG 193 (256)
Q Consensus 148 p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (256)
|..|.++++|++|+|++|++++..+..+..++ |+.|++.+|.+..
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999999999999999999976666666665 9999999999874
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=8.7e-13 Score=111.59 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=93.0
Q ss_pred CccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCc-eEEeecCcCcccCCcccCCCCCCCEE
Q 035658 130 ISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLV-TLYIYNNSLSGSIPSELGNLKSLSNL 208 (256)
Q Consensus 130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L 208 (256)
+++|+++++++|+++...+..|.++++|+.+++.+| ++...+..|.++++|+ .+++.+ .++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 679999999999999777788999999999999998 8767778899999999 999998 7776777899999999999
Q ss_pred EccCCcCcccCcccccCCCCCCEEEc
Q 035658 209 ALSSNKLSGSIPQSLGNLSNLAILYI 234 (256)
Q Consensus 209 ~L~~n~l~~~~~~~~~~l~~L~~L~l 234 (256)
+++.|.++...+.+|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999888889999999999864
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=5.8e-14 Score=127.50 Aligned_cols=149 Identities=11% Similarity=0.020 Sum_probs=70.5
Q ss_pred CCCCCcEEECCCCcCCCC----CchhccCCccCcEeeccCCcCCCC----ChhhhcCCCCCCEEEcccCCCCccCCcccc
Q 035658 105 SFPHLAYLDLQRNQLFGN----IPPQIGNISKLKYLGLSSNLFSGA----IPPQIGHLSYLKTLHLFENQLSGSIPHSLG 176 (256)
Q Consensus 105 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~ 176 (256)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+.++++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 345555555555555433 222334455555555555555422 22233445556666666555543 344444
Q ss_pred CCCCCceEEeecCcCc---ccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCC-hhccCCCC
Q 035658 177 NLTNLVTLYIYNNSLS---GSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIP-SEIGNLKS 252 (256)
Q Consensus 177 ~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~ 252 (256)
.+++|++|++++.... +..+..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 5555555555432111 11222333444455554444322 2344555556666666666666543322 22445555
Q ss_pred CCC
Q 035658 253 LSN 255 (256)
Q Consensus 253 L~~ 255 (256)
|++
T Consensus 320 L~~ 322 (592)
T 3ogk_B 320 LEV 322 (592)
T ss_dssp CCE
T ss_pred CCE
Confidence 543
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=7.2e-14 Score=126.90 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCCCccc----cCCcccCCCCCCcEEECCCCcCCC----CCchhccCCccCcEeeccCCcCCCCChhhhcC
Q 035658 82 ERVNSMNLTSIGLKGT----LHDFSFSSFPHLAYLDLQRNQLFG----NIPPQIGNISKLKYLGLSSNLFSGAIPPQIGH 153 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 153 (256)
.+++.|++++|.+.+. ++. .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ ++..+..
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 4677888888876543 222 44567889999999998873 244455678899999999988874 6677777
Q ss_pred CCCCCEEEccc
Q 035658 154 LSYLKTLHLFE 164 (256)
Q Consensus 154 l~~L~~L~ls~ 164 (256)
+++|++|++++
T Consensus 242 ~~~L~~L~l~~ 252 (592)
T 3ogk_B 242 AANLEEFCGGS 252 (592)
T ss_dssp CTTCCEEEECB
T ss_pred hhHHHhhcccc
Confidence 78888888764
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=2e-14 Score=123.82 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=110.9
Q ss_pred CCCCcEEECCCCcCCCCCchhc----c-CCccCcEeeccCCcCCCCChhhh-cCCCCCCEEEcccCCCCccCCccc----
Q 035658 106 FPHLAYLDLQRNQLFGNIPPQI----G-NISKLKYLGLSSNLFSGAIPPQI-GHLSYLKTLHLFENQLSGSIPHSL---- 175 (256)
Q Consensus 106 l~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~~~---- 175 (256)
++.|++|++++|.++......+ . ..++|++|++++|.++......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999975433333 2 23799999999999875333332 345689999999999985433333
Q ss_pred -cCCCCCceEEeecCcCccc----CCcccCCCCCCCEEEccCCcCccc----CcccccCCCCCCEEEcccCccccc----
Q 035658 176 -GNLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLALSSNKLSGS----IPQSLGNLSNLAILYIYNNSLSGL---- 242 (256)
Q Consensus 176 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---- 242 (256)
...++|++|+|++|.+++. ++..+...++|++|++++|.+++. ++..+...++|++|++++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467899999999999753 344457789999999999998753 355677788999999999999863
Q ss_pred CChhccCCCCCCC
Q 035658 243 IPSEIGNLKSLSN 255 (256)
Q Consensus 243 ~p~~l~~l~~L~~ 255 (256)
++..+...++|++
T Consensus 231 l~~~L~~~~~L~~ 243 (372)
T 3un9_A 231 LARAAREHPSLEL 243 (372)
T ss_dssp HHHHHHHCSSCCE
T ss_pred HHHHHHhCCCCCE
Confidence 3344445566664
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=9.9e-11 Score=101.68 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=91.2
Q ss_pred CEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEc
Q 035658 83 RVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHL 162 (256)
Q Consensus 83 ~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 162 (256)
.++.+.+.. .+. .+....|..+++|+.+++.+|.++.....+|. +.+|+.+.+..+ ++......|.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 355566554 333 34444677777777777776665533333333 355555555432 33333344455555555554
Q ss_pred ccC---------------------CCCccCCccccCCCCCceEEeecCcCc-----ccCCcccCCCCCCCEEEccCCcCc
Q 035658 163 FEN---------------------QLSGSIPHSLGNLTNLVTLYIYNNSLS-----GSIPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 163 s~n---------------------~l~~~~p~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
..+ .++......|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++
T Consensus 234 ~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 234 PENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred CCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 432 233333455666666777776666543 23344566667777777663 355
Q ss_pred ccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 217 GSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
.....+|.++++|+.+.+..| ++.+....|.++ +|+.
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 455566666777777777443 555555666666 5553
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=1.2e-10 Score=101.16 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=115.2
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccC---------------------
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSS--------------------- 140 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~--------------------- 140 (256)
.+++.++++++++. .++...|. ..+|+.+.+..+ +......+|.++++|+.+++..
T Consensus 180 ~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp 256 (401)
T 4fdw_A 180 YNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP 256 (401)
T ss_dssp TTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred ccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC
Confidence 35677777766655 23332443 345555555422 3333333444444444444433
Q ss_pred CcCCCCChhhhcCCCCCCEEEcccCCCC-----ccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcC
Q 035658 141 NLFSGAIPPQIGHLSYLKTLHLFENQLS-----GSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKL 215 (256)
Q Consensus 141 n~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 215 (256)
+.++......|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++......|.++++|+.+.+..| +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 3344445678899999999999988765 35567899999999999994 477666778999999999999765 6
Q ss_pred cccCcccccCCCCCCEEEcccCcccccCChhccCCC
Q 035658 216 SGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLK 251 (256)
Q Consensus 216 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 251 (256)
+.....+|.++ +|+.+++.+|.+....+..|.+++
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 66778889999 999999999998877777777774
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=6.4e-13 Score=120.62 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCCccccCCcccC-CCCCCcEEECCCC-cCCCC-CchhccCCccCcEeeccCCcCCCCChhhhc----CC
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFS-SFPHLAYLDLQRN-QLFGN-IPPQIGNISKLKYLGLSSNLFSGAIPPQIG----HL 154 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~----~l 154 (256)
.+++.|+++++.+++.... .+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+. .+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4788888888877765444 333 5778888888877 44322 334444677888888888877654444333 55
Q ss_pred CCCCEEEcccCC--CCc-cCCccccCCCCCceEEeecC
Q 035658 155 SYLKTLHLFENQ--LSG-SIPHSLGNLTNLVTLYIYNN 189 (256)
Q Consensus 155 ~~L~~L~ls~n~--l~~-~~p~~~~~l~~L~~L~L~~n 189 (256)
++|++|++++|. ++. .++..+..+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 677788777775 221 11112234567777777766
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=3.9e-13 Score=121.99 Aligned_cols=172 Identities=14% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCEEEEEcCCCCCccccCCcccCCCCCCcEEECCCCcCCCC-CchhccCCccCcEeec----------------------
Q 035658 82 ERVNSMNLTSIGLKGTLHDFSFSSFPHLAYLDLQRNQLFGN-IPPQIGNISKLKYLGL---------------------- 138 (256)
Q Consensus 82 ~~v~~l~L~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L---------------------- 138 (256)
.+++.|++++|.+.+......+..+++|++|++++| +... ++.....+++|++|++
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 478889998888765433323566777777777766 3211 1112223555666655
Q ss_pred ------------cCCcCCCCChhhhc-CCCCCCEEEcc--c----CCCCcc-----CCccccCCCCCceEEeecCcCccc
Q 035658 139 ------------SSNLFSGAIPPQIG-HLSYLKTLHLF--E----NQLSGS-----IPHSLGNLTNLVTLYIYNNSLSGS 194 (256)
Q Consensus 139 ------------~~n~l~~~~p~~~~-~l~~L~~L~ls--~----n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~ 194 (256)
..|.+++.....+. .+++|++|+++ + +.+++. ++..+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 33333322222222 24555555555 2 223311 111133445555555544 34333
Q ss_pred CCcccCC-CCCCCEEEccCCcCcccCcccc-cCCCCCCEEEcccCcccccCCh-hccCCCCCCC
Q 035658 195 IPSELGN-LKSLSNLALSSNKLSGSIPQSL-GNLSNLAILYIYNNSLSGLIPS-EIGNLKSLSN 255 (256)
Q Consensus 195 ~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~ 255 (256)
.+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 3333333 6778888888888765544444 5678888888888888654333 2334566654
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.03 E-value=9e-13 Score=107.88 Aligned_cols=104 Identities=22% Similarity=0.238 Sum_probs=68.0
Q ss_pred ccCCccCcE--eeccCCcCCCCChh----hhcCCCCCCEEEcccCCCCc--cCCccccCCCCCceEEeecCcCcccCCcc
Q 035658 127 IGNISKLKY--LGLSSNLFSGAIPP----QIGHLSYLKTLHLFENQLSG--SIPHSLGNLTNLVTLYIYNNSLSGSIPSE 198 (256)
Q Consensus 127 l~~l~~L~~--L~L~~n~l~~~~p~----~~~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (256)
+...+.|.. ++++.|... .++. ...++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+++. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 444455555 566666433 2222 22467888888888888886 3456666788888888888888754 22
Q ss_pred cCCCC--CCCEEEccCCcCcccCc-------ccccCCCCCCEEE
Q 035658 199 LGNLK--SLSNLALSSNKLSGSIP-------QSLGNLSNLAILY 233 (256)
Q Consensus 199 l~~l~--~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~ 233 (256)
+..+. +|++|++++|.+.+..| ..+..+++|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33333 78888888888876554 2356677887766
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.4e-10 Score=99.23 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=78.2
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhc--CCCCCCEEEccc--CCCCcc-----CC
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIG--HLSYLKTLHLFE--NQLSGS-----IP 172 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~ls~--n~l~~~-----~p 172 (256)
.+..+|+|+.|++++|.-. .++. +. +++|++|++..|.++......+. .+++|++|+|+. |...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3455677777777766311 2232 32 67777777777766533223333 577777777753 111111 11
Q ss_pred ccc--cCCCCCceEEeecCcCcccCCccc---CCCCCCCEEEccCCcCccc----CcccccCCCCCCEEEcccCcccc
Q 035658 173 HSL--GNLTNLVTLYIYNNSLSGSIPSEL---GNLKSLSNLALSSNKLSGS----IPQSLGNLSNLAILYIYNNSLSG 241 (256)
Q Consensus 173 ~~~--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 241 (256)
..+ ..+++|++|++++|.+.+..+..+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 112 246778888887777764322222 2466788888887777653 22333456778888888777764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=2.1e-10 Score=98.14 Aligned_cols=136 Identities=17% Similarity=0.198 Sum_probs=65.7
Q ss_pred cCCCCCCcEEECCCCcCC---------CCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCc
Q 035658 103 FSSFPHLAYLDLQRNQLF---------GNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPH 173 (256)
Q Consensus 103 ~~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~ 173 (256)
..++++|+.|.+...... +.+...+..+|+|+.|++++|.-. .++. + .+++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445556666666443221 123344455666666666665211 1222 2 256666666666665532222
Q ss_pred ccc--CCCCCceEEeec--CcCccc-----CCccc--CCCCCCCEEEccCCcCcccCcccc---cCCCCCCEEEcccCcc
Q 035658 174 SLG--NLTNLVTLYIYN--NSLSGS-----IPSEL--GNLKSLSNLALSSNKLSGSIPQSL---GNLSNLAILYIYNNSL 239 (256)
Q Consensus 174 ~~~--~l~~L~~L~L~~--n~l~~~-----~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l 239 (256)
.+. .+|+|+.|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 222 456666666642 111110 11112 235666666666666553322222 2355666666666666
Q ss_pred cc
Q 035658 240 SG 241 (256)
Q Consensus 240 ~~ 241 (256)
++
T Consensus 292 ~d 293 (362)
T 2ra8_A 292 TD 293 (362)
T ss_dssp BH
T ss_pred Ch
Confidence 54
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=2.2e-10 Score=88.88 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=44.3
Q ss_pred cCCCCCCEEEcccCCCCcc----CCccccCCCCCceEEeecCcCccc----CCcccCCCCCCCEEEc--cCCcCccc---
Q 035658 152 GHLSYLKTLHLFENQLSGS----IPHSLGNLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLAL--SSNKLSGS--- 218 (256)
Q Consensus 152 ~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~--- 218 (256)
...++|++|++++|.++.. +...+...++|++|+|++|.+.+. +...+...++|++|++ ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344455555555544421 122233334555555555555432 2334445556666666 55666543
Q ss_pred -CcccccCCCCCCEEEcccCccc
Q 035658 219 -IPQSLGNLSNLAILYIYNNSLS 240 (256)
Q Consensus 219 -~~~~~~~l~~L~~L~l~~n~l~ 240 (256)
+...+...++|++|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 2233444566777777777664
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=3.5e-10 Score=87.68 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=80.0
Q ss_pred ccCCCCCCcEEECCCC-cCCCC----CchhccCCccCcEeeccCCcCCCC----ChhhhcCCCCCCEEEcccCCCCcc--
Q 035658 102 SFSSFPHLAYLDLQRN-QLFGN----IPPQIGNISKLKYLGLSSNLFSGA----IPPQIGHLSYLKTLHLFENQLSGS-- 170 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~-- 170 (256)
.+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...++|++|++++|.|+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 5566777888888887 77532 344566677888888888887642 334455667888888888888743
Q ss_pred --CCccccCCCCCceEEe--ecCcCccc----CCcccCCCCCCCEEEccCCcCc
Q 035658 171 --IPHSLGNLTNLVTLYI--YNNSLSGS----IPSELGNLKSLSNLALSSNKLS 216 (256)
Q Consensus 171 --~p~~~~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 216 (256)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666778888888 77888753 2334555678888888888764
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.70 E-value=7.2e-10 Score=90.63 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=64.7
Q ss_pred cCCccCcEeeccCCcCCC--CChhhhcCCCCCCEEEcccCCCCccCCccccCCC--CCceEEeecCcCcccCCc------
Q 035658 128 GNISKLKYLGLSSNLFSG--AIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLT--NLVTLYIYNNSLSGSIPS------ 197 (256)
Q Consensus 128 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~~~------ 197 (256)
.++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568899999999999997 3456777899999999999999964 3344444 899999999999876652
Q ss_pred -ccCCCCCCCEEE
Q 035658 198 -ELGNLKSLSNLA 209 (256)
Q Consensus 198 -~l~~l~~L~~L~ 209 (256)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356789999886
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=8.1e-08 Score=73.31 Aligned_cols=34 Identities=6% Similarity=0.079 Sum_probs=16.6
Q ss_pred CCcEEECCCCcCCCCCchhccCCccCcEeeccCC
Q 035658 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSN 141 (256)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 141 (256)
+|++|+++++.++..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555554332333444555555555554
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.40 E-value=3.7e-06 Score=71.95 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=100.4
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCC
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNL 181 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 181 (256)
.+....+++.+.+..+ +......++.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++......|.++++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 4555667777776544 33334556777888888888765 54455567778888888888654 554445677888888
Q ss_pred ceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCC
Q 035658 182 VTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLK 251 (256)
Q Consensus 182 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 251 (256)
+.+.+.++.++......|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+....|.+++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 88888888777666677888888888888754 55456677888888888887654 4544455565554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=9.8e-08 Score=72.84 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=55.9
Q ss_pred CccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCC-CCccCCccccCC----CCCceEEeecCc-CcccCCcccCCCC
Q 035658 130 ISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ-LSGSIPHSLGNL----TNLVTLYIYNNS-LSGSIPSELGNLK 203 (256)
Q Consensus 130 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~ 203 (256)
-.+|++||++++.++..--..+..+++|++|++++|. ++...-..+..+ ++|++|++++|. +++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3468888888888776555566777888888888874 654333334443 357777777764 6654444556677
Q ss_pred CCCEEEccCCc
Q 035658 204 SLSNLALSSNK 214 (256)
Q Consensus 204 ~L~~L~L~~n~ 214 (256)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777764
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=2.7e-06 Score=73.32 Aligned_cols=145 Identities=16% Similarity=0.082 Sum_probs=100.6
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCC
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNL 181 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 181 (256)
.|..+..++.+.+..+... ....+|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++..-...|.++.+|
T Consensus 248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence 5556666666666555332 33445666667776666555432 245777888888888765 554556678888999
Q ss_pred ceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCC
Q 035658 182 VTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSN 255 (256)
Q Consensus 182 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 255 (256)
+.+++..+ ++.....+|.++++|+.+.+..+ ++.....+|.++++|+.+++..+- + .+...|.++++|+.
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 99998754 66555678889999999999876 665667788999999999987653 3 23456888887764
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=5.2e-06 Score=71.54 Aligned_cols=111 Identities=9% Similarity=0.123 Sum_probs=63.1
Q ss_pred chhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCC
Q 035658 124 PPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLK 203 (256)
Q Consensus 124 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 203 (256)
..+|.++.+|+.+.+.++-.. .....|.+++.|+.+.+. +.++......|.++.+|+.+++..+ ++......|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345666666666666554332 344556666666666664 2344344455666666666666543 4434444566666
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEEcccCc
Q 035658 204 SLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNS 238 (256)
Q Consensus 204 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 238 (256)
+|+.+.+..+ ++.+...+|.++++|+.+++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 6666666543 443445566666666666666654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=5.6e-06 Score=71.33 Aligned_cols=132 Identities=11% Similarity=0.014 Sum_probs=67.3
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCC---------------
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQ--------------- 166 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~--------------- 166 (256)
+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++......|.++++|+.+.+..+-
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 5556666666666432 44333445666666666666543 332333445555555544443221
Q ss_pred ------CCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccC
Q 035658 167 ------LSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNN 237 (256)
Q Consensus 167 ------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 237 (256)
........|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++......|.++..|+.+.+..+
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 111122345566666666665443 2233445666666666666554 33344455666666666655544
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=2.7e-05 Score=66.56 Aligned_cols=127 Identities=16% Similarity=0.139 Sum_probs=97.4
Q ss_pred hccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCcccCCcccCCCCCC
Q 035658 126 QIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLSGSIPSELGNLKSL 205 (256)
Q Consensus 126 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 205 (256)
++..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|.++++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 4555667777777554 33344567778889999998766 55455667888899999998765 554555678899999
Q ss_pred CEEEccCCcCcccCcccccCCCCCCEEEcccCcccccCChhccCCCCCCCC
Q 035658 206 SNLALSSNKLSGSIPQSLGNLSNLAILYIYNNSLSGLIPSEIGNLKSLSNL 256 (256)
Q Consensus 206 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 256 (256)
+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+....|.++++|+.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 99999998888777889999999999999754 666667789999888764
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.19 E-value=8.7e-06 Score=70.12 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=66.9
Q ss_pred ccCCCCCCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCC
Q 035658 102 SFSSFPHLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNL 181 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 181 (256)
.|..+..|+.+.+..+... ....+|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++..-...|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 5556666666666544322 334456666666666664 3344344455666666666666543 443444556666666
Q ss_pred ceEEeecCcCcccCCcccCCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcccCc
Q 035658 182 VTLYIYNNSLSGSIPSELGNLKSLSNLALSSNKLSGSIPQSLGNLSNLAILYIYNNS 238 (256)
Q Consensus 182 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 238 (256)
+.+.+..+ ++.....+|.++++|+.+++.++... ...+....+|+.+.+..+.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 66666543 44344455666666666666655432 1234455566666555443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.89 E-value=4.6e-06 Score=64.75 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=43.2
Q ss_pred hhcCCCCCCEEEcccCCCCcc----CCccccCCCCCceEEeecCcCccc----CCcccCCCCCCCEEEccCCc---Ccc-
Q 035658 150 QIGHLSYLKTLHLFENQLSGS----IPHSLGNLTNLVTLYIYNNSLSGS----IPSELGNLKSLSNLALSSNK---LSG- 217 (256)
Q Consensus 150 ~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~- 217 (256)
.+..-++|+.|+|++|.+... +...+..-+.|++|+|++|.|.+. +.+.+..-+.|++|+|++|. +..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 344445555555555555422 122223334555555555555432 22334444556666665442 221
Q ss_pred ---cCcccccCCCCCCEEEcccCcc
Q 035658 218 ---SIPQSLGNLSNLAILYIYNNSL 239 (256)
Q Consensus 218 ---~~~~~~~~l~~L~~L~l~~n~l 239 (256)
.+.+.+..-+.|+.|+++.|.+
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1223344456667777766554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.76 E-value=9.9e-06 Score=62.85 Aligned_cols=114 Identities=14% Similarity=0.127 Sum_probs=70.6
Q ss_pred ccCCCCCCcEEECCCC-cCCCC----CchhccCCccCcEeeccCCcCCCC----ChhhhcCCCCCCEEEcccCCCCcc--
Q 035658 102 SFSSFPHLAYLDLQRN-QLFGN----IPPQIGNISKLKYLGLSSNLFSGA----IPPQIGHLSYLKTLHLFENQLSGS-- 170 (256)
Q Consensus 102 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~-- 170 (256)
.+.+-+.|++|+|++| +|... +.+++..-..|++|+|++|.+.+. +.+.+..-+.|++|+|++|.|+..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3444567777777764 65422 344556667788888888877632 334455567788888888887732
Q ss_pred --CCccccCCCCCceEEeecCc---Ccc----cCCcccCCCCCCCEEEccCCcC
Q 035658 171 --IPHSLGNLTNLVTLYIYNNS---LSG----SIPSELGNLKSLSNLALSSNKL 215 (256)
Q Consensus 171 --~p~~~~~l~~L~~L~L~~n~---l~~----~~~~~l~~l~~L~~L~L~~n~l 215 (256)
+...+..-+.|++|+|++|. +.. .+...+..-+.|+.|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 22344555668888887653 332 1333455567788888876654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00085 Score=48.36 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=21.1
Q ss_pred CCcEEECCCCcCCCCCchhccCCccCcEeeccCCcCC
Q 035658 108 HLAYLDLQRNQLFGNIPPQIGNISKLKYLGLSSNLFS 144 (256)
Q Consensus 108 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 144 (256)
++++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666666665444445555556666666655543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.15 E-value=0.00082 Score=48.44 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=31.7
Q ss_pred EeeccCCcCC-CCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeecCcCc
Q 035658 135 YLGLSSNLFS-GAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYNNSLS 192 (256)
Q Consensus 135 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 192 (256)
.++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666654 23343322 34666666666666544555566666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.03 E-value=10 Score=25.21 Aligned_cols=13 Identities=0% Similarity=0.095 Sum_probs=5.2
Q ss_pred hccCCccCcEeec
Q 035658 126 QIGNISKLKYLGL 138 (256)
Q Consensus 126 ~l~~l~~L~~L~L 138 (256)
+|.++.+|+.+.+
T Consensus 15 aF~~c~~L~~i~i 27 (100)
T 2lz0_A 15 LFAGNTVIREITV 27 (100)
T ss_dssp TTTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEc
Confidence 3344444444433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.08 E-value=18 Score=23.99 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=22.7
Q ss_pred CCCCChhhhcCCCCCCEEEcccCCCCccCCccccCCCCCceEEeec
Q 035658 143 FSGAIPPQIGHLSYLKTLHLFENQLSGSIPHSLGNLTNLVTLYIYN 188 (256)
Q Consensus 143 l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 188 (256)
++..-...|.++++|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445555666666655543 3323344555555555555544
Done!